Multiple sequence alignment - TraesCS5B01G155700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G155700 chr5B 100.000 5152 0 0 1 5152 287795394 287790243 0.000000e+00 9515.0
1 TraesCS5B01G155700 chr5B 84.848 99 12 2 1817 1915 357134345 357134440 4.250000e-16 97.1
2 TraesCS5B01G155700 chr5A 86.165 1966 193 48 1507 3434 338233929 338235853 0.000000e+00 2050.0
3 TraesCS5B01G155700 chr5A 92.488 1411 63 25 1 1394 338231472 338232856 0.000000e+00 1978.0
4 TraesCS5B01G155700 chr5A 87.382 951 57 27 3500 4419 338235852 338236770 0.000000e+00 1033.0
5 TraesCS5B01G155700 chr5A 82.471 696 56 25 4463 5152 338236764 338237399 2.710000e-152 549.0
6 TraesCS5B01G155700 chr5A 83.582 67 9 2 4750 4815 620553471 620553406 1.550000e-05 62.1
7 TraesCS5B01G155700 chr5D 85.533 1970 186 65 1506 3434 254834197 254836108 0.000000e+00 1967.0
8 TraesCS5B01G155700 chr5D 93.718 971 46 7 1 966 254831917 254832877 0.000000e+00 1441.0
9 TraesCS5B01G155700 chr5D 85.594 951 67 25 3500 4419 254836107 254837018 0.000000e+00 933.0
10 TraesCS5B01G155700 chr5D 94.096 271 11 3 4886 5152 254837382 254837651 1.730000e-109 407.0
11 TraesCS5B01G155700 chr5D 89.124 331 19 6 1064 1387 254833256 254833576 3.740000e-106 396.0
12 TraesCS5B01G155700 chr5D 90.583 223 11 3 4463 4675 254837012 254837234 2.350000e-73 287.0
13 TraesCS5B01G155700 chr5D 81.197 117 9 5 1395 1499 254833613 254833728 1.190000e-11 82.4
14 TraesCS5B01G155700 chr6A 81.250 224 23 11 1574 1785 140569030 140568814 4.130000e-36 163.0
15 TraesCS5B01G155700 chr6A 87.719 57 6 1 4750 4806 26966452 26966507 1.200000e-06 65.8
16 TraesCS5B01G155700 chr3A 79.253 241 19 17 1569 1786 121652346 121652114 6.960000e-29 139.0
17 TraesCS5B01G155700 chr3A 77.922 154 21 8 1817 1967 121652193 121652050 3.310000e-12 84.2
18 TraesCS5B01G155700 chr3A 84.375 64 7 2 4751 4813 670751143 670751082 5.570000e-05 60.2
19 TraesCS5B01G155700 chr2B 80.000 210 25 9 1773 1976 85327535 85327733 6.960000e-29 139.0
20 TraesCS5B01G155700 chr2B 76.211 227 37 10 1569 1784 109789018 109789238 2.540000e-18 104.0
21 TraesCS5B01G155700 chr2B 92.857 42 2 1 1591 1631 166462775 166462816 5.570000e-05 60.2
22 TraesCS5B01G155700 chr2A 78.571 210 28 7 1773 1976 55179615 55179813 7.010000e-24 122.0
23 TraesCS5B01G155700 chr3D 89.474 57 5 1 4750 4806 580313620 580313565 2.570000e-08 71.3
24 TraesCS5B01G155700 chr7A 86.885 61 7 1 1570 1629 548357783 548357843 3.330000e-07 67.6
25 TraesCS5B01G155700 chr7A 94.444 36 2 0 1655 1690 228539092 228539127 7.210000e-04 56.5
26 TraesCS5B01G155700 chr4B 84.375 64 9 1 4750 4813 508539085 508539023 1.550000e-05 62.1
27 TraesCS5B01G155700 chr6D 100.000 28 0 0 4777 4804 100204418 100204391 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G155700 chr5B 287790243 287795394 5151 True 9515.000000 9515 100.000000 1 5152 1 chr5B.!!$R1 5151
1 TraesCS5B01G155700 chr5A 338231472 338237399 5927 False 1402.500000 2050 87.126500 1 5152 4 chr5A.!!$F1 5151
2 TraesCS5B01G155700 chr5D 254831917 254837651 5734 False 787.628571 1967 88.549286 1 5152 7 chr5D.!!$F1 5151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
978 993 0.670546 AACACCAGCAATCGACTCCG 60.671 55.0 0.0 0.0 37.07 4.63 F
2594 3893 0.110486 GCCCTGTCCCTGAAGAAACA 59.890 55.0 0.0 0.0 0.00 2.83 F
2930 4245 0.383949 TGCTTGTGCGAGGGTTTTTC 59.616 50.0 0.0 0.0 43.34 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2934 4249 0.178068 GCTACCAGAAATCTCGGCCA 59.822 55.0 2.24 0.00 0.00 5.36 R
3453 4773 0.166814 GCTGATTGAAGCGACCACAC 59.833 55.0 0.00 0.00 32.56 3.82 R
4880 6243 0.038744 AAATCCAGTGTCCCCTGCAG 59.961 55.0 6.78 6.78 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.969001 AGCTAAATAATTGGTAACCTTGTCTAA 57.031 29.630 0.00 0.00 0.00 2.10
50 51 7.166167 GGTAACCTTGTCTAATCCTTCTTCAA 58.834 38.462 0.00 0.00 0.00 2.69
371 373 1.369692 CCCCGGAAAACAAAAGGCC 59.630 57.895 0.73 0.00 0.00 5.19
420 422 5.823570 TCTCTGAATTAGGAGGAGTAGTTCG 59.176 44.000 7.13 0.00 0.00 3.95
749 754 7.642669 CGATAATTAATTGGCACACAAGAGAT 58.357 34.615 11.05 0.00 43.48 2.75
752 757 6.949352 ATTAATTGGCACACAAGAGATAGG 57.051 37.500 0.00 0.00 43.48 2.57
805 810 2.595238 CGGGCCAATCTACTACTACCT 58.405 52.381 4.39 0.00 0.00 3.08
806 811 2.557490 CGGGCCAATCTACTACTACCTC 59.443 54.545 4.39 0.00 0.00 3.85
808 813 4.224762 GGGCCAATCTACTACTACCTCTT 58.775 47.826 4.39 0.00 0.00 2.85
809 814 4.654724 GGGCCAATCTACTACTACCTCTTT 59.345 45.833 4.39 0.00 0.00 2.52
810 815 5.221481 GGGCCAATCTACTACTACCTCTTTC 60.221 48.000 4.39 0.00 0.00 2.62
836 843 1.524482 GGCTGGACTGGGCTTCTAG 59.476 63.158 0.00 0.00 0.00 2.43
837 844 1.153269 GCTGGACTGGGCTTCTAGC 60.153 63.158 4.51 4.51 39.96 3.42
838 845 1.142748 CTGGACTGGGCTTCTAGCG 59.857 63.158 0.00 0.00 43.62 4.26
839 846 1.304962 TGGACTGGGCTTCTAGCGA 60.305 57.895 0.00 0.00 43.62 4.93
936 943 4.188462 TGACAACAATCTATCCGCGATTT 58.812 39.130 8.23 0.00 0.00 2.17
937 944 4.634004 TGACAACAATCTATCCGCGATTTT 59.366 37.500 8.23 0.00 0.00 1.82
942 949 6.377327 ACAATCTATCCGCGATTTTCAAAT 57.623 33.333 8.23 0.00 0.00 2.32
973 988 1.855213 GCAGCAACACCAGCAATCGA 61.855 55.000 0.00 0.00 0.00 3.59
978 993 0.670546 AACACCAGCAATCGACTCCG 60.671 55.000 0.00 0.00 37.07 4.63
988 1003 1.592400 ATCGACTCCGCGAGAACCAA 61.592 55.000 8.23 0.00 44.26 3.67
990 1005 1.006571 GACTCCGCGAGAACCAACA 60.007 57.895 8.23 0.00 33.32 3.33
994 1009 2.325082 CCGCGAGAACCAACAAGGG 61.325 63.158 8.23 0.00 43.89 3.95
1005 1020 1.077005 CCAACAAGGGGGAGGATGAAA 59.923 52.381 0.00 0.00 0.00 2.69
1034 1049 3.265489 AGAAGGAATTCACCCTGGGTAA 58.735 45.455 20.09 13.45 32.11 2.85
1181 1478 1.276622 GGCAGGATCCCCGTATGTAT 58.723 55.000 8.55 0.00 37.58 2.29
1198 1495 7.030165 CGTATGTATCTCTCTCTCTCTCTCTC 58.970 46.154 0.00 0.00 0.00 3.20
1229 1526 5.924825 GCCGAACCGAAACTTGATATACTAT 59.075 40.000 0.00 0.00 0.00 2.12
1230 1527 7.086376 GCCGAACCGAAACTTGATATACTATA 58.914 38.462 0.00 0.00 0.00 1.31
1257 1560 8.030106 CCTGCTACAGTACTAATTAGGAATAGC 58.970 40.741 20.40 20.40 33.53 2.97
1296 1600 2.484770 GGGCATACTAGATTCGCAACCA 60.485 50.000 0.00 0.00 0.00 3.67
1297 1601 2.802816 GGCATACTAGATTCGCAACCAG 59.197 50.000 0.00 0.00 0.00 4.00
1302 1606 0.178068 TAGATTCGCAACCAGCCTCC 59.822 55.000 0.00 0.00 41.38 4.30
1345 1654 2.851195 ACTGTACTTTGTTGCCTCCTG 58.149 47.619 0.00 0.00 0.00 3.86
1348 1657 3.735591 TGTACTTTGTTGCCTCCTGTAC 58.264 45.455 0.00 0.00 0.00 2.90
1368 1677 1.732259 CATAGTGTGGTTCGGCTCAAC 59.268 52.381 0.00 0.00 0.00 3.18
1381 1692 2.483877 CGGCTCAACATAAGCTTGACAA 59.516 45.455 9.86 0.00 39.75 3.18
1422 1766 4.082300 TCAAGTTTTTCAGCTGTGCTCAAA 60.082 37.500 14.67 3.36 36.40 2.69
1427 1771 3.909776 TTCAGCTGTGCTCAAATTCAG 57.090 42.857 14.67 0.00 36.40 3.02
1433 1777 1.144708 TGTGCTCAAATTCAGTGGGGA 59.855 47.619 0.00 0.00 0.00 4.81
1438 1782 3.875369 GCTCAAATTCAGTGGGGAGTCAT 60.875 47.826 0.00 0.00 0.00 3.06
1450 1794 3.117701 TGGGGAGTCATGAAGTTTGTTGA 60.118 43.478 0.00 0.00 0.00 3.18
1451 1795 3.503748 GGGGAGTCATGAAGTTTGTTGAG 59.496 47.826 0.00 0.00 0.00 3.02
1452 1796 3.057946 GGGAGTCATGAAGTTTGTTGAGC 60.058 47.826 0.00 0.00 0.00 4.26
1454 1798 3.817647 GAGTCATGAAGTTTGTTGAGCCT 59.182 43.478 0.00 0.00 0.00 4.58
1455 1799 3.567164 AGTCATGAAGTTTGTTGAGCCTG 59.433 43.478 0.00 0.00 0.00 4.85
1456 1800 3.316308 GTCATGAAGTTTGTTGAGCCTGT 59.684 43.478 0.00 0.00 0.00 4.00
1458 1802 2.297701 TGAAGTTTGTTGAGCCTGTCC 58.702 47.619 0.00 0.00 0.00 4.02
1466 1822 2.438021 TGTTGAGCCTGTCCTTAAGTGT 59.562 45.455 0.97 0.00 0.00 3.55
1493 1849 3.350219 TGAAATCTAGAACCAGGGTGC 57.650 47.619 0.00 0.00 0.00 5.01
1499 1855 1.561542 CTAGAACCAGGGTGCTTGGAT 59.438 52.381 3.82 0.00 39.08 3.41
1500 1856 0.779997 AGAACCAGGGTGCTTGGATT 59.220 50.000 0.00 0.00 39.08 3.01
1501 1857 1.147817 AGAACCAGGGTGCTTGGATTT 59.852 47.619 0.00 0.00 39.08 2.17
1502 1858 1.970640 GAACCAGGGTGCTTGGATTTT 59.029 47.619 0.00 0.00 39.08 1.82
1503 1859 2.101640 ACCAGGGTGCTTGGATTTTT 57.898 45.000 0.00 0.00 39.08 1.94
1504 1860 1.970640 ACCAGGGTGCTTGGATTTTTC 59.029 47.619 0.00 0.00 39.08 2.29
1523 2799 6.601741 TTTTCATGAAGCACCAAATTTGAC 57.398 33.333 19.86 8.52 0.00 3.18
1525 2801 4.873817 TCATGAAGCACCAAATTTGACAG 58.126 39.130 19.86 9.51 0.00 3.51
1535 2811 4.202284 ACCAAATTTGACAGCTGCAAATCT 60.202 37.500 31.14 22.96 43.13 2.40
1540 2816 5.963176 TTTGACAGCTGCAAATCTATGAA 57.037 34.783 23.52 7.50 30.87 2.57
1541 2817 5.556355 TTGACAGCTGCAAATCTATGAAG 57.444 39.130 15.27 0.00 0.00 3.02
1549 2825 6.630444 CTGCAAATCTATGAAGCACCTAAT 57.370 37.500 0.00 0.00 0.00 1.73
1551 2827 6.798482 TGCAAATCTATGAAGCACCTAATTG 58.202 36.000 0.00 0.00 0.00 2.32
1552 2828 5.689068 GCAAATCTATGAAGCACCTAATTGC 59.311 40.000 0.00 0.00 43.34 3.56
1553 2829 6.211515 CAAATCTATGAAGCACCTAATTGCC 58.788 40.000 0.00 0.00 44.14 4.52
1589 2873 9.477484 GGTAACATACATATTCTAGTGGTTCAG 57.523 37.037 0.00 0.00 0.00 3.02
1629 2914 8.052621 ACATATACCTTACACCCACCATATTT 57.947 34.615 0.00 0.00 0.00 1.40
1643 2928 7.092489 ACCCACCATATTTTAATGCAGGATTTT 60.092 33.333 0.00 0.00 0.00 1.82
1644 2929 8.428063 CCCACCATATTTTAATGCAGGATTTTA 58.572 33.333 0.00 0.00 0.00 1.52
1659 2944 8.452534 TGCAGGATTTTATTTGATTTCATTTGC 58.547 29.630 0.00 0.00 0.00 3.68
1687 2972 9.761504 TGAGTTAATGCAAAAGATTTGATTTGA 57.238 25.926 6.99 0.00 38.50 2.69
1693 2978 7.804843 TGCAAAAGATTTGATTTGATTTGGT 57.195 28.000 6.99 0.00 38.50 3.67
1694 2979 8.223177 TGCAAAAGATTTGATTTGATTTGGTT 57.777 26.923 6.99 0.00 38.50 3.67
1695 2980 8.129840 TGCAAAAGATTTGATTTGATTTGGTTG 58.870 29.630 6.99 0.00 38.50 3.77
1696 2981 7.113825 GCAAAAGATTTGATTTGATTTGGTTGC 59.886 33.333 6.99 0.00 38.50 4.17
1697 2982 6.806388 AAGATTTGATTTGATTTGGTTGCC 57.194 33.333 0.00 0.00 0.00 4.52
1698 2983 6.117975 AGATTTGATTTGATTTGGTTGCCT 57.882 33.333 0.00 0.00 0.00 4.75
1716 3011 4.885413 TGCCTCTGGAACAATTTGATTTG 58.115 39.130 2.79 0.00 38.70 2.32
1722 3017 7.330208 CCTCTGGAACAATTTGATTTGATTGAC 59.670 37.037 2.79 0.00 38.70 3.18
1725 3020 9.695526 CTGGAACAATTTGATTTGATTGACTTA 57.304 29.630 2.79 0.00 38.70 2.24
1750 3045 3.767131 GCAATTACCTTACACCCACCAAT 59.233 43.478 0.00 0.00 0.00 3.16
1752 3047 2.500392 TACCTTACACCCACCAATGC 57.500 50.000 0.00 0.00 0.00 3.56
1753 3048 0.480690 ACCTTACACCCACCAATGCA 59.519 50.000 0.00 0.00 0.00 3.96
1756 3051 0.897863 TTACACCCACCAATGCAGGC 60.898 55.000 0.00 0.00 0.00 4.85
1760 3055 4.124351 CCACCAATGCAGGCGCTG 62.124 66.667 7.64 4.78 39.64 5.18
1770 3065 3.502237 CAGGCGCTGCAAAAGATTT 57.498 47.368 7.64 0.00 0.00 2.17
1771 3066 1.065358 CAGGCGCTGCAAAAGATTTG 58.935 50.000 7.64 0.00 0.00 2.32
1793 3088 7.903995 TTGATTTGATTTGATTTAGTTGCCC 57.096 32.000 0.00 0.00 0.00 5.36
1801 3096 0.322322 ATTTAGTTGCCCGTGTCCGA 59.678 50.000 0.00 0.00 35.63 4.55
1814 3109 2.034179 CGTGTCCGACATATAGCTGGAA 59.966 50.000 4.13 0.00 35.63 3.53
1815 3110 3.381949 GTGTCCGACATATAGCTGGAAC 58.618 50.000 4.13 0.00 0.00 3.62
1821 3116 4.150627 CCGACATATAGCTGGAACGATTTG 59.849 45.833 0.00 0.00 0.00 2.32
1827 3122 7.498900 ACATATAGCTGGAACGATTTGATTTGA 59.501 33.333 0.00 0.00 0.00 2.69
1856 3151 6.377146 AGTTAATGCAATTACCTTACACCCAG 59.623 38.462 0.00 0.00 38.79 4.45
1860 3155 3.447229 GCAATTACCTTACACCCAGCAAT 59.553 43.478 0.00 0.00 0.00 3.56
1861 3156 4.677779 GCAATTACCTTACACCCAGCAATG 60.678 45.833 0.00 0.00 0.00 2.82
1862 3157 3.799432 TTACCTTACACCCAGCAATGT 57.201 42.857 0.00 0.00 0.00 2.71
1889 3184 3.365820 GCACTGCGAAAGATTTGATTTGG 59.634 43.478 0.00 0.00 0.00 3.28
1917 3212 3.355378 TGAGTTAATGCAGAACATGGGG 58.645 45.455 14.72 0.00 39.60 4.96
1925 3220 1.165782 AGAACATGGGGGAGGGGAA 59.834 57.895 0.00 0.00 0.00 3.97
1929 3224 2.368878 ATGGGGGAGGGGAAGCTC 60.369 66.667 0.00 0.00 0.00 4.09
1957 3252 1.405121 GGACGTATGACCACCAACTCC 60.405 57.143 0.00 0.00 0.00 3.85
1967 3262 4.542525 TGACCACCAACTCCCCTTTAATAT 59.457 41.667 0.00 0.00 0.00 1.28
1969 3264 5.910931 ACCACCAACTCCCCTTTAATATTT 58.089 37.500 0.00 0.00 0.00 1.40
2071 3366 1.275010 TCTGCTTCGTTGGTAGCATCA 59.725 47.619 0.00 0.00 44.18 3.07
2102 3397 7.656948 TGTTTTGCCTTTTGATTTCCTCATTAG 59.343 33.333 0.00 0.00 32.72 1.73
2127 3422 1.536180 TGGTTCTGCCAAAGCTGGA 59.464 52.632 0.00 0.00 46.92 3.86
2132 3427 0.535780 TCTGCCAAAGCTGGACACAG 60.536 55.000 0.00 0.00 46.92 3.66
2146 3441 5.810074 GCTGGACACAGTTTAACAATTTGTT 59.190 36.000 18.13 18.13 46.62 2.83
2148 3443 7.489757 GCTGGACACAGTTTAACAATTTGTTTA 59.510 33.333 19.15 8.39 46.62 2.01
2163 3458 8.043710 ACAATTTGTTTATCAGTTTGTTTCCCA 58.956 29.630 0.00 0.00 32.79 4.37
2164 3459 9.054922 CAATTTGTTTATCAGTTTGTTTCCCAT 57.945 29.630 0.00 0.00 0.00 4.00
2165 3460 8.831715 ATTTGTTTATCAGTTTGTTTCCCATC 57.168 30.769 0.00 0.00 0.00 3.51
2166 3461 6.968263 TGTTTATCAGTTTGTTTCCCATCA 57.032 33.333 0.00 0.00 0.00 3.07
2328 3625 7.581213 TTCTTGGATTGAACAAGTTATGTGT 57.419 32.000 5.24 0.00 42.99 3.72
2348 3645 4.016444 TGTGCTCAAACTAAATCATCCCC 58.984 43.478 0.00 0.00 0.00 4.81
2349 3646 3.065371 GTGCTCAAACTAAATCATCCCCG 59.935 47.826 0.00 0.00 0.00 5.73
2350 3647 2.618709 GCTCAAACTAAATCATCCCCGG 59.381 50.000 0.00 0.00 0.00 5.73
2382 3679 9.675464 AATGCATAATTCCACAATTCAGAAATT 57.325 25.926 0.00 0.00 35.43 1.82
2403 3700 1.615392 GCCATGCAAAGAACAACTCCT 59.385 47.619 0.00 0.00 0.00 3.69
2411 3708 4.380531 CAAAGAACAACTCCTGAGCTACA 58.619 43.478 0.00 0.00 0.00 2.74
2460 3757 5.598005 ACCACACCTCAAAATTGATGAGAAA 59.402 36.000 18.44 0.00 45.74 2.52
2483 3780 0.249868 AGCTAGCAACGTGAGCAACA 60.250 50.000 18.83 0.36 38.73 3.33
2488 3785 1.201181 AGCAACGTGAGCAACAAAACA 59.799 42.857 14.66 0.00 0.00 2.83
2497 3794 3.253230 GAGCAACAAAACAAGCAACTGT 58.747 40.909 0.00 0.00 0.00 3.55
2506 3804 2.546494 AAGCAACTGTGAGCGTGGC 61.546 57.895 0.00 0.00 35.48 5.01
2507 3805 4.374702 GCAACTGTGAGCGTGGCG 62.375 66.667 0.00 0.00 0.00 5.69
2534 3832 2.610727 CCAAGGACAGGAGAACTCGTTC 60.611 54.545 1.62 1.62 39.78 3.95
2536 3834 0.966920 GGACAGGAGAACTCGTTCCA 59.033 55.000 6.20 0.00 40.33 3.53
2594 3893 0.110486 GCCCTGTCCCTGAAGAAACA 59.890 55.000 0.00 0.00 0.00 2.83
2601 3900 4.136796 TGTCCCTGAAGAAACACATGAAG 58.863 43.478 0.00 0.00 0.00 3.02
2617 3916 4.702131 ACATGAAGTGACTATCTTTTGCCC 59.298 41.667 0.00 0.00 0.00 5.36
2636 3939 1.424493 CGAGCAAAGCGGACTCCATC 61.424 60.000 0.00 0.00 0.00 3.51
2657 3960 2.464157 GCCCATGTCTGGCTAGATAC 57.536 55.000 2.00 0.00 45.70 2.24
2667 3971 2.623416 CTGGCTAGATACGTCATCACCA 59.377 50.000 0.00 3.34 35.96 4.17
2682 3986 1.071299 ACCACTCGATGCAGCACAA 59.929 52.632 1.53 0.00 0.00 3.33
2686 3990 1.134075 CTCGATGCAGCACAACAGC 59.866 57.895 1.53 0.00 0.00 4.40
2714 4018 0.966875 GCAGCAATCACCCATGGTCA 60.967 55.000 11.73 0.00 31.02 4.02
2750 4054 3.070878 CCACCCCTGCTTTATTTGTTGTT 59.929 43.478 0.00 0.00 0.00 2.83
2757 4061 5.584251 CCTGCTTTATTTGTTGTTGGTTGTT 59.416 36.000 0.00 0.00 0.00 2.83
2779 4085 1.142870 CCAGACTTTGTGGTTGGGAGA 59.857 52.381 0.00 0.00 0.00 3.71
2780 4086 2.422803 CCAGACTTTGTGGTTGGGAGAA 60.423 50.000 0.00 0.00 0.00 2.87
2781 4087 2.880890 CAGACTTTGTGGTTGGGAGAAG 59.119 50.000 0.00 0.00 0.00 2.85
2782 4088 2.777692 AGACTTTGTGGTTGGGAGAAGA 59.222 45.455 0.00 0.00 0.00 2.87
2783 4089 3.202151 AGACTTTGTGGTTGGGAGAAGAA 59.798 43.478 0.00 0.00 0.00 2.52
2784 4090 3.288092 ACTTTGTGGTTGGGAGAAGAAC 58.712 45.455 0.00 0.00 0.00 3.01
2785 4091 3.287222 CTTTGTGGTTGGGAGAAGAACA 58.713 45.455 0.00 0.00 0.00 3.18
2786 4092 3.593442 TTGTGGTTGGGAGAAGAACAT 57.407 42.857 0.00 0.00 0.00 2.71
2787 4093 4.715534 TTGTGGTTGGGAGAAGAACATA 57.284 40.909 0.00 0.00 0.00 2.29
2788 4094 4.015872 TGTGGTTGGGAGAAGAACATAC 57.984 45.455 0.00 0.00 0.00 2.39
2798 4104 4.757149 GGAGAAGAACATACAAGTGCAGTT 59.243 41.667 0.00 0.00 0.00 3.16
2830 4144 9.227777 GTTCCATTTACAGTAAAGATACCACTT 57.772 33.333 11.41 0.00 32.08 3.16
2831 4145 8.786826 TCCATTTACAGTAAAGATACCACTTG 57.213 34.615 11.41 2.09 32.08 3.16
2832 4146 8.380099 TCCATTTACAGTAAAGATACCACTTGT 58.620 33.333 11.41 0.00 32.08 3.16
2834 4148 7.429636 TTTACAGTAAAGATACCACTTGTGC 57.570 36.000 1.26 0.00 32.08 4.57
2835 4149 5.228945 ACAGTAAAGATACCACTTGTGCT 57.771 39.130 0.00 0.00 32.08 4.40
2836 4150 6.354794 ACAGTAAAGATACCACTTGTGCTA 57.645 37.500 0.00 0.00 32.08 3.49
2837 4151 6.164176 ACAGTAAAGATACCACTTGTGCTAC 58.836 40.000 0.00 0.00 32.08 3.58
2838 4152 6.163476 CAGTAAAGATACCACTTGTGCTACA 58.837 40.000 0.00 0.00 32.08 2.74
2839 4153 6.311445 CAGTAAAGATACCACTTGTGCTACAG 59.689 42.308 0.00 0.00 32.08 2.74
2840 4154 5.483685 AAAGATACCACTTGTGCTACAGA 57.516 39.130 0.00 0.00 0.00 3.41
2841 4155 5.483685 AAGATACCACTTGTGCTACAGAA 57.516 39.130 0.00 0.00 0.00 3.02
2842 4156 5.483685 AGATACCACTTGTGCTACAGAAA 57.516 39.130 0.00 0.00 0.00 2.52
2844 4158 5.701290 AGATACCACTTGTGCTACAGAAAAC 59.299 40.000 0.00 0.00 0.00 2.43
2845 4159 3.616219 ACCACTTGTGCTACAGAAAACA 58.384 40.909 0.00 0.00 0.00 2.83
2847 4161 5.373222 ACCACTTGTGCTACAGAAAACATA 58.627 37.500 0.00 0.00 0.00 2.29
2849 4163 6.320164 ACCACTTGTGCTACAGAAAACATAAA 59.680 34.615 0.00 0.00 0.00 1.40
2850 4164 6.636850 CCACTTGTGCTACAGAAAACATAAAC 59.363 38.462 0.00 0.00 0.00 2.01
2851 4165 7.417612 CACTTGTGCTACAGAAAACATAAACT 58.582 34.615 0.00 0.00 0.00 2.66
2852 4166 7.915397 CACTTGTGCTACAGAAAACATAAACTT 59.085 33.333 0.00 0.00 0.00 2.66
2853 4167 9.116067 ACTTGTGCTACAGAAAACATAAACTTA 57.884 29.630 0.00 0.00 0.00 2.24
2854 4168 9.599322 CTTGTGCTACAGAAAACATAAACTTAG 57.401 33.333 0.00 0.00 0.00 2.18
2855 4169 8.896320 TGTGCTACAGAAAACATAAACTTAGA 57.104 30.769 0.00 0.00 0.00 2.10
2856 4170 9.332502 TGTGCTACAGAAAACATAAACTTAGAA 57.667 29.630 0.00 0.00 0.00 2.10
2882 4196 4.812626 TGCAGTGATAGCTGAACACATATG 59.187 41.667 17.31 0.00 38.70 1.78
2906 4220 5.010282 CAGCCCCATAAACTTAGAAACTGT 58.990 41.667 0.00 0.00 0.00 3.55
2907 4221 5.010282 AGCCCCATAAACTTAGAAACTGTG 58.990 41.667 0.00 0.00 0.00 3.66
2930 4245 0.383949 TGCTTGTGCGAGGGTTTTTC 59.616 50.000 0.00 0.00 43.34 2.29
2932 4247 1.335051 GCTTGTGCGAGGGTTTTTCTC 60.335 52.381 0.00 0.00 0.00 2.87
2934 4249 2.341846 TGTGCGAGGGTTTTTCTCTT 57.658 45.000 0.00 0.00 0.00 2.85
2941 4256 0.881796 GGGTTTTTCTCTTGGCCGAG 59.118 55.000 14.59 14.59 0.00 4.63
2986 4301 2.447429 TCCCCCACCACAAGAAACATTA 59.553 45.455 0.00 0.00 0.00 1.90
3088 4403 0.915364 AGCTTCCACTGGGAGGATTC 59.085 55.000 5.44 0.00 46.01 2.52
3122 4437 1.843851 AGGCGATAGGGACAATTCCAA 59.156 47.619 0.00 0.00 44.98 3.53
3123 4438 2.443255 AGGCGATAGGGACAATTCCAAT 59.557 45.455 0.00 0.00 44.98 3.16
3125 4440 3.636764 GGCGATAGGGACAATTCCAATTT 59.363 43.478 0.00 0.00 44.98 1.82
3145 4460 7.445402 CCAATTTACCATTGAATCGTCCTCTAT 59.555 37.037 0.00 0.00 0.00 1.98
3148 4463 8.801882 TTTACCATTGAATCGTCCTCTATTTT 57.198 30.769 0.00 0.00 0.00 1.82
3164 4479 4.766891 TCTATTTTGCCTGCAATATAGGGC 59.233 41.667 27.16 5.48 42.63 5.19
3177 4494 6.486657 TGCAATATAGGGCAGAATTACTTGTC 59.513 38.462 0.00 0.00 34.58 3.18
3191 4508 9.067986 AGAATTACTTGTCCTGTCCTTAAAAAG 57.932 33.333 0.00 0.00 0.00 2.27
3252 4569 3.447950 ACCTAGATTCCCTGTAACCGTT 58.552 45.455 0.00 0.00 0.00 4.44
3257 4574 3.197116 AGATTCCCTGTAACCGTTGGTAG 59.803 47.826 0.00 0.00 33.12 3.18
3260 4577 0.738412 CCTGTAACCGTTGGTAGCCG 60.738 60.000 0.00 0.00 33.12 5.52
3337 4657 7.268586 TGGTTTGTGCTGTTTTTATATGTGTT 58.731 30.769 0.00 0.00 0.00 3.32
3338 4658 7.436673 TGGTTTGTGCTGTTTTTATATGTGTTC 59.563 33.333 0.00 0.00 0.00 3.18
3348 4668 8.629158 TGTTTTTATATGTGTTCTCTTGCTGTT 58.371 29.630 0.00 0.00 0.00 3.16
3356 4676 5.163405 TGTGTTCTCTTGCTGTTAGAAGAGT 60.163 40.000 0.00 0.00 43.83 3.24
3361 4681 7.328277 TCTCTTGCTGTTAGAAGAGTCTATC 57.672 40.000 0.00 0.00 43.83 2.08
3362 4682 6.320164 TCTCTTGCTGTTAGAAGAGTCTATCC 59.680 42.308 0.00 0.00 43.83 2.59
3364 4684 4.270834 TGCTGTTAGAAGAGTCTATCCGT 58.729 43.478 0.00 0.00 36.23 4.69
3367 4687 5.562506 TGTTAGAAGAGTCTATCCGTGTG 57.437 43.478 0.00 0.00 36.23 3.82
3371 4691 2.509166 AGAGTCTATCCGTGTGTGGA 57.491 50.000 0.00 0.00 43.58 4.02
3381 4701 3.218453 TCCGTGTGTGGAAATTTGATGT 58.782 40.909 0.00 0.00 34.30 3.06
3390 4710 4.023193 GTGGAAATTTGATGTCAGGACGTT 60.023 41.667 0.00 0.00 0.00 3.99
3400 4720 5.124776 TGATGTCAGGACGTTTTCTTTGTTT 59.875 36.000 0.00 0.00 0.00 2.83
3401 4721 6.316640 TGATGTCAGGACGTTTTCTTTGTTTA 59.683 34.615 0.00 0.00 0.00 2.01
3402 4722 6.687081 TGTCAGGACGTTTTCTTTGTTTAT 57.313 33.333 0.00 0.00 0.00 1.40
3412 4732 9.413048 ACGTTTTCTTTGTTTATTTGTCAAGAA 57.587 25.926 0.00 0.00 0.00 2.52
3441 4761 7.377766 GTCATGTTAGGTGACATTGTATGTT 57.622 36.000 1.69 0.00 45.03 2.71
3442 4762 7.816640 GTCATGTTAGGTGACATTGTATGTTT 58.183 34.615 1.69 0.00 45.03 2.83
3443 4763 7.750458 GTCATGTTAGGTGACATTGTATGTTTG 59.250 37.037 1.69 0.00 45.03 2.93
3444 4764 6.007936 TGTTAGGTGACATTGTATGTTTGC 57.992 37.500 0.00 0.00 45.03 3.68
3445 4765 5.767665 TGTTAGGTGACATTGTATGTTTGCT 59.232 36.000 0.00 0.00 45.03 3.91
3446 4766 6.264292 TGTTAGGTGACATTGTATGTTTGCTT 59.736 34.615 0.00 0.00 45.03 3.91
3447 4767 5.789643 AGGTGACATTGTATGTTTGCTTT 57.210 34.783 0.00 0.00 45.03 3.51
3448 4768 6.160576 AGGTGACATTGTATGTTTGCTTTT 57.839 33.333 0.00 0.00 45.03 2.27
3449 4769 5.984926 AGGTGACATTGTATGTTTGCTTTTG 59.015 36.000 0.00 0.00 45.03 2.44
3450 4770 5.752955 GGTGACATTGTATGTTTGCTTTTGT 59.247 36.000 0.00 0.00 45.03 2.83
3451 4771 6.257630 GGTGACATTGTATGTTTGCTTTTGTT 59.742 34.615 0.00 0.00 45.03 2.83
3452 4772 7.201600 GGTGACATTGTATGTTTGCTTTTGTTT 60.202 33.333 0.00 0.00 45.03 2.83
3453 4773 7.635587 GTGACATTGTATGTTTGCTTTTGTTTG 59.364 33.333 0.00 0.00 45.03 2.93
3454 4774 7.332926 TGACATTGTATGTTTGCTTTTGTTTGT 59.667 29.630 0.00 0.00 45.03 2.83
3455 4775 7.462731 ACATTGTATGTTTGCTTTTGTTTGTG 58.537 30.769 0.00 0.00 41.63 3.33
3456 4776 7.118971 ACATTGTATGTTTGCTTTTGTTTGTGT 59.881 29.630 0.00 0.00 41.63 3.72
3457 4777 6.400579 TGTATGTTTGCTTTTGTTTGTGTG 57.599 33.333 0.00 0.00 0.00 3.82
3458 4778 4.943142 ATGTTTGCTTTTGTTTGTGTGG 57.057 36.364 0.00 0.00 0.00 4.17
3459 4779 3.733337 TGTTTGCTTTTGTTTGTGTGGT 58.267 36.364 0.00 0.00 0.00 4.16
3460 4780 3.743396 TGTTTGCTTTTGTTTGTGTGGTC 59.257 39.130 0.00 0.00 0.00 4.02
3461 4781 2.270275 TGCTTTTGTTTGTGTGGTCG 57.730 45.000 0.00 0.00 0.00 4.79
3462 4782 0.920664 GCTTTTGTTTGTGTGGTCGC 59.079 50.000 0.00 0.00 0.00 5.19
3463 4783 1.469079 GCTTTTGTTTGTGTGGTCGCT 60.469 47.619 0.00 0.00 0.00 4.93
3464 4784 2.874849 CTTTTGTTTGTGTGGTCGCTT 58.125 42.857 0.00 0.00 0.00 4.68
3465 4785 2.553079 TTTGTTTGTGTGGTCGCTTC 57.447 45.000 0.00 0.00 0.00 3.86
3466 4786 1.454201 TTGTTTGTGTGGTCGCTTCA 58.546 45.000 0.00 0.00 0.00 3.02
3467 4787 1.454201 TGTTTGTGTGGTCGCTTCAA 58.546 45.000 0.00 0.00 0.00 2.69
3468 4788 2.020720 TGTTTGTGTGGTCGCTTCAAT 58.979 42.857 0.00 0.00 0.00 2.57
3469 4789 2.032799 TGTTTGTGTGGTCGCTTCAATC 59.967 45.455 0.00 0.00 0.00 2.67
3470 4790 1.960417 TTGTGTGGTCGCTTCAATCA 58.040 45.000 0.00 0.00 0.00 2.57
3471 4791 1.511850 TGTGTGGTCGCTTCAATCAG 58.488 50.000 0.00 0.00 0.00 2.90
3472 4792 0.166814 GTGTGGTCGCTTCAATCAGC 59.833 55.000 0.00 0.00 36.33 4.26
3473 4793 0.955428 TGTGGTCGCTTCAATCAGCC 60.955 55.000 0.00 0.00 36.31 4.85
3474 4794 0.674895 GTGGTCGCTTCAATCAGCCT 60.675 55.000 0.00 0.00 36.31 4.58
3475 4795 0.674581 TGGTCGCTTCAATCAGCCTG 60.675 55.000 0.00 0.00 36.31 4.85
3476 4796 0.674895 GGTCGCTTCAATCAGCCTGT 60.675 55.000 0.00 0.00 36.31 4.00
3477 4797 1.160137 GTCGCTTCAATCAGCCTGTT 58.840 50.000 0.00 0.00 36.31 3.16
3478 4798 1.537202 GTCGCTTCAATCAGCCTGTTT 59.463 47.619 0.00 0.00 36.31 2.83
3479 4799 1.536766 TCGCTTCAATCAGCCTGTTTG 59.463 47.619 8.86 8.86 36.31 2.93
3480 4800 1.267806 CGCTTCAATCAGCCTGTTTGT 59.732 47.619 13.64 0.00 36.31 2.83
3481 4801 2.669364 GCTTCAATCAGCCTGTTTGTG 58.331 47.619 13.64 9.81 33.21 3.33
3482 4802 2.669364 CTTCAATCAGCCTGTTTGTGC 58.331 47.619 13.64 0.00 31.09 4.57
3483 4803 1.689984 TCAATCAGCCTGTTTGTGCA 58.310 45.000 13.64 0.00 31.09 4.57
3484 4804 2.030371 TCAATCAGCCTGTTTGTGCAA 58.970 42.857 13.64 0.00 31.09 4.08
3485 4805 2.429971 TCAATCAGCCTGTTTGTGCAAA 59.570 40.909 13.64 0.00 31.09 3.68
3486 4806 3.069872 TCAATCAGCCTGTTTGTGCAAAT 59.930 39.130 13.64 0.00 31.09 2.32
3487 4807 2.512485 TCAGCCTGTTTGTGCAAATG 57.488 45.000 0.46 0.00 32.36 2.32
3488 4808 1.755959 TCAGCCTGTTTGTGCAAATGT 59.244 42.857 0.46 0.00 32.36 2.71
3489 4809 2.954989 TCAGCCTGTTTGTGCAAATGTA 59.045 40.909 0.46 0.00 32.36 2.29
3490 4810 3.573538 TCAGCCTGTTTGTGCAAATGTAT 59.426 39.130 0.46 0.00 32.36 2.29
3491 4811 4.039004 TCAGCCTGTTTGTGCAAATGTATT 59.961 37.500 0.46 0.00 32.36 1.89
3492 4812 4.751098 CAGCCTGTTTGTGCAAATGTATTT 59.249 37.500 0.46 0.00 32.36 1.40
3493 4813 5.236911 CAGCCTGTTTGTGCAAATGTATTTT 59.763 36.000 0.46 0.00 32.36 1.82
3494 4814 5.821995 AGCCTGTTTGTGCAAATGTATTTTT 59.178 32.000 0.46 0.00 32.36 1.94
3495 4815 6.989169 AGCCTGTTTGTGCAAATGTATTTTTA 59.011 30.769 0.46 0.00 32.36 1.52
3496 4816 7.661027 AGCCTGTTTGTGCAAATGTATTTTTAT 59.339 29.630 0.46 0.00 32.36 1.40
3497 4817 8.288913 GCCTGTTTGTGCAAATGTATTTTTATT 58.711 29.630 0.46 0.00 32.36 1.40
3547 4867 7.758495 TGAAACTGGAGAAGTAAAACAAAGTC 58.242 34.615 0.00 0.00 38.56 3.01
3555 4875 7.534239 GGAGAAGTAAAACAAAGTCGCTATTTG 59.466 37.037 5.59 5.59 42.17 2.32
3566 4886 1.072489 TCGCTATTTGTCACCCAACCA 59.928 47.619 0.00 0.00 31.20 3.67
3568 4888 2.351350 CGCTATTTGTCACCCAACCAAC 60.351 50.000 0.00 0.00 31.20 3.77
3581 4901 3.370527 CCCAACCAACCGAGTCATTCTAT 60.371 47.826 0.00 0.00 0.00 1.98
3623 4943 6.927294 AACTGACGAGATTTGAGAAACTTT 57.073 33.333 0.00 0.00 0.00 2.66
3629 4949 7.170998 TGACGAGATTTGAGAAACTTTTAGACC 59.829 37.037 0.00 0.00 0.00 3.85
3659 4980 0.674895 ACGTGCATTTCCCTCTCTGC 60.675 55.000 0.00 0.00 35.21 4.26
3665 4986 2.094854 GCATTTCCCTCTCTGCTGTTTG 60.095 50.000 0.00 0.00 0.00 2.93
3678 5002 8.169977 TCTCTGCTGTTTGTCTTAATCAAATT 57.830 30.769 8.48 0.00 37.18 1.82
3714 5040 1.105457 TGCTGCTCCAACATTATGCC 58.895 50.000 0.00 0.00 0.00 4.40
3761 5087 5.295045 TGTTGAAAGGTTTTCGAGGAGTAAC 59.705 40.000 0.00 0.00 0.00 2.50
3776 5102 4.918588 GGAGTAACCTTCCAGAAATGGAA 58.081 43.478 9.26 9.26 44.90 3.53
3799 5125 7.770897 GGAAAAGAGGAAGTAAGCATATCTCAA 59.229 37.037 0.00 0.00 0.00 3.02
3800 5126 8.729805 AAAAGAGGAAGTAAGCATATCTCAAG 57.270 34.615 0.00 0.00 0.00 3.02
3801 5127 7.667575 AAGAGGAAGTAAGCATATCTCAAGA 57.332 36.000 0.00 0.00 0.00 3.02
3802 5128 7.049799 AGAGGAAGTAAGCATATCTCAAGAC 57.950 40.000 0.00 0.00 0.00 3.01
3804 5130 5.663106 AGGAAGTAAGCATATCTCAAGACCA 59.337 40.000 0.00 0.00 0.00 4.02
3805 5131 5.988561 GGAAGTAAGCATATCTCAAGACCAG 59.011 44.000 0.00 0.00 0.00 4.00
3806 5132 6.183360 GGAAGTAAGCATATCTCAAGACCAGA 60.183 42.308 0.00 0.00 0.00 3.86
3807 5133 6.155475 AGTAAGCATATCTCAAGACCAGAC 57.845 41.667 0.00 0.00 0.00 3.51
3808 5134 5.658634 AGTAAGCATATCTCAAGACCAGACA 59.341 40.000 0.00 0.00 0.00 3.41
3809 5135 5.627182 AAGCATATCTCAAGACCAGACAT 57.373 39.130 0.00 0.00 0.00 3.06
3810 5136 4.958509 AGCATATCTCAAGACCAGACATG 58.041 43.478 0.00 0.00 0.00 3.21
3814 5140 6.522946 CATATCTCAAGACCAGACATGATGT 58.477 40.000 0.00 0.00 0.00 3.06
3815 5141 4.897509 TCTCAAGACCAGACATGATGTT 57.102 40.909 0.00 0.00 0.00 2.71
3818 5144 4.717877 TCAAGACCAGACATGATGTTTGT 58.282 39.130 14.02 5.50 31.30 2.83
3820 5146 5.239306 TCAAGACCAGACATGATGTTTGTTC 59.761 40.000 14.02 9.93 31.30 3.18
3821 5147 4.074970 AGACCAGACATGATGTTTGTTCC 58.925 43.478 14.02 4.10 31.30 3.62
3822 5148 4.074970 GACCAGACATGATGTTTGTTCCT 58.925 43.478 14.02 0.00 31.30 3.36
3826 5152 6.721208 ACCAGACATGATGTTTGTTCCTTTAT 59.279 34.615 14.02 0.00 31.30 1.40
3828 5154 8.906867 CCAGACATGATGTTTGTTCCTTTATAT 58.093 33.333 14.02 0.00 31.30 0.86
3832 5158 9.859427 ACATGATGTTTGTTCCTTTATATTGTG 57.141 29.630 0.00 0.00 0.00 3.33
3833 5159 8.810427 CATGATGTTTGTTCCTTTATATTGTGC 58.190 33.333 0.00 0.00 0.00 4.57
3834 5160 7.890515 TGATGTTTGTTCCTTTATATTGTGCA 58.109 30.769 0.00 0.00 0.00 4.57
3835 5161 8.363390 TGATGTTTGTTCCTTTATATTGTGCAA 58.637 29.630 0.00 0.00 0.00 4.08
3836 5162 7.938563 TGTTTGTTCCTTTATATTGTGCAAC 57.061 32.000 0.00 0.00 37.35 4.17
3837 5163 6.926272 TGTTTGTTCCTTTATATTGTGCAACC 59.074 34.615 0.00 0.00 34.36 3.77
3844 5174 7.490840 TCCTTTATATTGTGCAACCATTGATG 58.509 34.615 0.00 0.00 34.36 3.07
3856 5186 5.049267 GCAACCATTGATGATTGCTTGTTTT 60.049 36.000 14.39 0.00 43.26 2.43
3878 5208 1.004277 GATTGCAGGTACCTGGTTCCA 59.996 52.381 36.91 25.36 43.77 3.53
3889 5219 1.615116 CCTGGTTCCATGTGACATGCT 60.615 52.381 19.69 0.00 0.00 3.79
3941 5271 3.099905 CAGGTTACATCTGTCTCCAGGA 58.900 50.000 0.00 0.00 39.31 3.86
3963 5293 0.248296 GGCGCTTTTCGTGTTTGTGA 60.248 50.000 7.64 0.00 41.07 3.58
3964 5294 1.540407 GCGCTTTTCGTGTTTGTGAA 58.460 45.000 0.00 0.00 41.07 3.18
3965 5295 1.914700 GCGCTTTTCGTGTTTGTGAAA 59.085 42.857 0.00 0.00 41.07 2.69
3980 5310 1.208293 GTGAAAAACACCTTGCCCCAA 59.792 47.619 0.00 0.00 43.05 4.12
3983 5313 1.280457 AAAACACCTTGCCCCAAACA 58.720 45.000 0.00 0.00 0.00 2.83
3990 5320 1.809567 CTTGCCCCAAACAGGTGAGC 61.810 60.000 0.00 0.00 34.66 4.26
3994 5324 1.413118 CCCCAAACAGGTGAGCTTTT 58.587 50.000 0.00 0.00 34.66 2.27
3996 5326 2.962421 CCCCAAACAGGTGAGCTTTTAA 59.038 45.455 0.00 0.00 34.66 1.52
3999 5329 4.321974 CCCAAACAGGTGAGCTTTTAATCC 60.322 45.833 0.00 0.00 34.66 3.01
4000 5330 4.280677 CCAAACAGGTGAGCTTTTAATCCA 59.719 41.667 0.00 0.00 0.00 3.41
4001 5331 5.047092 CCAAACAGGTGAGCTTTTAATCCAT 60.047 40.000 0.00 0.00 0.00 3.41
4002 5332 5.649782 AACAGGTGAGCTTTTAATCCATG 57.350 39.130 0.00 0.00 0.00 3.66
4003 5333 4.666512 ACAGGTGAGCTTTTAATCCATGT 58.333 39.130 0.00 0.00 0.00 3.21
4004 5334 4.702131 ACAGGTGAGCTTTTAATCCATGTC 59.298 41.667 0.00 0.00 0.00 3.06
4005 5335 4.701651 CAGGTGAGCTTTTAATCCATGTCA 59.298 41.667 0.00 0.00 0.00 3.58
4006 5336 4.702131 AGGTGAGCTTTTAATCCATGTCAC 59.298 41.667 0.00 0.00 33.77 3.67
4007 5337 4.142381 GGTGAGCTTTTAATCCATGTCACC 60.142 45.833 8.50 8.50 44.29 4.02
4008 5338 3.689161 TGAGCTTTTAATCCATGTCACCG 59.311 43.478 0.00 0.00 0.00 4.94
4009 5339 3.016736 AGCTTTTAATCCATGTCACCGG 58.983 45.455 0.00 0.00 0.00 5.28
4010 5340 2.099098 GCTTTTAATCCATGTCACCGGG 59.901 50.000 6.32 0.00 0.00 5.73
4011 5341 2.428544 TTTAATCCATGTCACCGGGG 57.571 50.000 6.32 0.00 0.00 5.73
4025 5355 4.054825 GGGGTGGTGTTGCGCATG 62.055 66.667 12.75 0.00 0.00 4.06
4026 5356 3.294493 GGGTGGTGTTGCGCATGT 61.294 61.111 12.75 0.00 0.00 3.21
4027 5357 2.255252 GGTGGTGTTGCGCATGTC 59.745 61.111 12.75 5.82 0.00 3.06
4028 5358 2.255252 GTGGTGTTGCGCATGTCC 59.745 61.111 12.75 14.38 0.00 4.02
4029 5359 2.203266 TGGTGTTGCGCATGTCCA 60.203 55.556 12.75 16.96 0.00 4.02
4030 5360 1.603171 TGGTGTTGCGCATGTCCAT 60.603 52.632 12.75 0.00 0.00 3.41
4031 5361 1.153978 GGTGTTGCGCATGTCCATG 60.154 57.895 12.75 2.86 41.60 3.66
4037 5367 1.882623 TTGCGCATGTCCATGTGTAAA 59.117 42.857 12.75 12.10 45.86 2.01
4039 5369 3.056962 TTGCGCATGTCCATGTGTAAATT 60.057 39.130 12.75 0.00 45.86 1.82
4041 5371 6.579857 TTGCGCATGTCCATGTGTAAATTTG 61.580 40.000 12.75 0.00 45.86 2.32
4042 5372 4.484236 CGCATGTCCATGTGTAAATTTGT 58.516 39.130 11.70 0.00 42.61 2.83
4043 5373 4.558470 CGCATGTCCATGTGTAAATTTGTC 59.442 41.667 11.70 0.00 42.61 3.18
4044 5374 4.558470 GCATGTCCATGTGTAAATTTGTCG 59.442 41.667 8.91 0.00 40.80 4.35
4045 5375 5.618863 GCATGTCCATGTGTAAATTTGTCGA 60.619 40.000 8.91 0.00 40.80 4.20
4047 5377 5.753744 TGTCCATGTGTAAATTTGTCGAAC 58.246 37.500 0.00 0.00 0.00 3.95
4048 5378 5.297029 TGTCCATGTGTAAATTTGTCGAACA 59.703 36.000 0.00 0.00 0.00 3.18
4050 5380 6.861055 GTCCATGTGTAAATTTGTCGAACAAT 59.139 34.615 0.00 0.00 38.00 2.71
4132 5476 4.882842 TCCTCTACATGTGTTACAGCAA 57.117 40.909 9.11 0.00 0.00 3.91
4175 5519 0.537828 TGCCTGACTGCAATTCAGCA 60.538 50.000 16.40 14.75 46.76 4.41
4176 5520 0.109412 GCCTGACTGCAATTCAGCAC 60.109 55.000 16.40 9.04 46.76 4.40
4177 5521 1.241165 CCTGACTGCAATTCAGCACA 58.759 50.000 16.40 5.56 46.76 4.57
4178 5522 1.068748 CCTGACTGCAATTCAGCACAC 60.069 52.381 16.40 0.00 46.76 3.82
4179 5523 0.953727 TGACTGCAATTCAGCACACC 59.046 50.000 0.00 0.00 46.76 4.16
4180 5524 1.242076 GACTGCAATTCAGCACACCT 58.758 50.000 0.00 0.00 46.76 4.00
4181 5525 2.224499 TGACTGCAATTCAGCACACCTA 60.224 45.455 0.00 0.00 46.76 3.08
4182 5526 2.813754 GACTGCAATTCAGCACACCTAA 59.186 45.455 0.00 0.00 46.76 2.69
4183 5527 3.221771 ACTGCAATTCAGCACACCTAAA 58.778 40.909 0.00 0.00 46.76 1.85
4184 5528 3.636300 ACTGCAATTCAGCACACCTAAAA 59.364 39.130 0.00 0.00 46.76 1.52
4185 5529 4.281688 ACTGCAATTCAGCACACCTAAAAT 59.718 37.500 0.00 0.00 46.76 1.82
4186 5530 5.476599 ACTGCAATTCAGCACACCTAAAATA 59.523 36.000 0.00 0.00 46.76 1.40
4187 5531 5.708948 TGCAATTCAGCACACCTAAAATAC 58.291 37.500 0.00 0.00 40.11 1.89
4188 5532 5.476599 TGCAATTCAGCACACCTAAAATACT 59.523 36.000 0.00 0.00 40.11 2.12
4189 5533 6.657117 TGCAATTCAGCACACCTAAAATACTA 59.343 34.615 0.00 0.00 40.11 1.82
4190 5534 7.175816 TGCAATTCAGCACACCTAAAATACTAA 59.824 33.333 0.00 0.00 40.11 2.24
4191 5535 7.698130 GCAATTCAGCACACCTAAAATACTAAG 59.302 37.037 0.00 0.00 0.00 2.18
4192 5536 8.730680 CAATTCAGCACACCTAAAATACTAAGT 58.269 33.333 0.00 0.00 0.00 2.24
4267 5611 3.710209 AAGTTGATCAGTAGCAGCCTT 57.290 42.857 0.00 0.00 0.00 4.35
4299 5645 8.236084 TCTCTAGTTTATTTTACTTGCACGTC 57.764 34.615 0.00 0.00 0.00 4.34
4387 5737 0.808755 CTGTGCATGATGCTGCTTGA 59.191 50.000 19.19 0.00 45.31 3.02
4412 5762 1.978617 CTTTGGCAAGGATGGGCGT 60.979 57.895 2.75 0.00 37.44 5.68
4413 5763 0.679640 CTTTGGCAAGGATGGGCGTA 60.680 55.000 2.75 0.00 37.44 4.42
4414 5764 0.033601 TTTGGCAAGGATGGGCGTAT 60.034 50.000 0.00 0.00 37.44 3.06
4415 5765 0.840617 TTGGCAAGGATGGGCGTATA 59.159 50.000 0.00 0.00 37.44 1.47
4416 5766 1.064003 TGGCAAGGATGGGCGTATAT 58.936 50.000 0.00 0.00 37.44 0.86
4417 5767 2.261729 TGGCAAGGATGGGCGTATATA 58.738 47.619 0.00 0.00 37.44 0.86
4418 5768 2.843730 TGGCAAGGATGGGCGTATATAT 59.156 45.455 0.00 0.00 37.44 0.86
4419 5769 4.034410 TGGCAAGGATGGGCGTATATATA 58.966 43.478 0.00 0.00 37.44 0.86
4420 5770 4.658435 TGGCAAGGATGGGCGTATATATAT 59.342 41.667 0.00 0.00 37.44 0.86
4421 5771 5.841783 TGGCAAGGATGGGCGTATATATATA 59.158 40.000 0.00 0.00 37.44 0.86
4422 5772 6.500400 TGGCAAGGATGGGCGTATATATATAT 59.500 38.462 10.10 10.10 37.44 0.86
4423 5773 7.676468 TGGCAAGGATGGGCGTATATATATATA 59.324 37.037 8.16 8.16 37.44 0.86
4424 5774 8.705594 GGCAAGGATGGGCGTATATATATATAT 58.294 37.037 17.37 17.37 33.68 0.86
4511 5861 0.605589 ACAAGTAAACGCCTCCTGCC 60.606 55.000 0.00 0.00 36.24 4.85
4512 5862 0.321653 CAAGTAAACGCCTCCTGCCT 60.322 55.000 0.00 0.00 36.24 4.75
4513 5863 0.036294 AAGTAAACGCCTCCTGCCTC 60.036 55.000 0.00 0.00 36.24 4.70
4521 5871 2.435586 CTCCTGCCTCGCTGTTGG 60.436 66.667 0.00 0.00 0.00 3.77
4636 5996 2.380084 TGCTTGGAGTAGCGGTTTAG 57.620 50.000 0.00 0.00 44.18 1.85
4648 6008 6.803642 AGTAGCGGTTTAGTATAAGAGTTGG 58.196 40.000 0.00 0.00 0.00 3.77
4703 6063 1.153901 CGTGGTAGGACGCGAATGT 60.154 57.895 15.93 0.00 46.47 2.71
4704 6064 1.410737 CGTGGTAGGACGCGAATGTG 61.411 60.000 15.93 0.00 46.47 3.21
4705 6065 1.447140 TGGTAGGACGCGAATGTGC 60.447 57.895 15.93 0.00 0.00 4.57
4706 6066 1.447140 GGTAGGACGCGAATGTGCA 60.447 57.895 15.93 0.00 31.86 4.57
4707 6067 1.017177 GGTAGGACGCGAATGTGCAA 61.017 55.000 15.93 0.00 31.86 4.08
4708 6068 1.006832 GTAGGACGCGAATGTGCAAT 58.993 50.000 15.93 0.00 31.86 3.56
4709 6069 1.396996 GTAGGACGCGAATGTGCAATT 59.603 47.619 15.93 0.00 31.86 2.32
4710 6070 0.881118 AGGACGCGAATGTGCAATTT 59.119 45.000 15.93 0.00 31.86 1.82
4711 6071 1.269448 AGGACGCGAATGTGCAATTTT 59.731 42.857 15.93 0.00 31.86 1.82
4712 6072 2.058057 GGACGCGAATGTGCAATTTTT 58.942 42.857 15.93 0.00 34.15 1.94
4713 6073 3.057876 AGGACGCGAATGTGCAATTTTTA 60.058 39.130 15.93 0.00 31.86 1.52
4714 6074 3.300590 GGACGCGAATGTGCAATTTTTAG 59.699 43.478 15.93 0.00 34.15 1.85
4715 6075 2.661195 ACGCGAATGTGCAATTTTTAGC 59.339 40.909 15.93 0.00 34.15 3.09
4716 6076 2.660715 CGCGAATGTGCAATTTTTAGCA 59.339 40.909 0.00 0.00 38.65 3.49
4725 6085 4.565022 TGCAATTTTTAGCACTTAAGCCC 58.435 39.130 1.29 0.00 35.51 5.19
4726 6086 4.039730 TGCAATTTTTAGCACTTAAGCCCA 59.960 37.500 1.29 0.00 35.51 5.36
4727 6087 5.178061 GCAATTTTTAGCACTTAAGCCCAT 58.822 37.500 1.29 0.00 34.23 4.00
4728 6088 5.063817 GCAATTTTTAGCACTTAAGCCCATG 59.936 40.000 1.29 0.00 34.23 3.66
4765 6125 3.684788 ACGAGTAAGAAATGTGATGGCAC 59.315 43.478 0.00 0.00 45.35 5.01
4770 6130 4.778534 AAGAAATGTGATGGCACTTCTG 57.221 40.909 0.00 0.00 45.36 3.02
4836 6199 0.037734 CCGGAGTTGGTAGCCCTTTT 59.962 55.000 0.00 0.00 0.00 2.27
4857 6220 5.856126 TTGATGTCTGATTTTGTCGGTAC 57.144 39.130 0.00 0.00 34.65 3.34
4858 6221 4.888917 TGATGTCTGATTTTGTCGGTACA 58.111 39.130 0.00 0.00 34.65 2.90
4862 6225 5.224888 TGTCTGATTTTGTCGGTACAGTAC 58.775 41.667 1.59 1.59 36.83 2.73
4865 6228 3.005684 TGATTTTGTCGGTACAGTACGGT 59.994 43.478 15.78 3.62 36.83 4.83
4866 6229 4.217334 TGATTTTGTCGGTACAGTACGGTA 59.783 41.667 15.78 1.38 36.83 4.02
4867 6230 4.576216 TTTTGTCGGTACAGTACGGTAA 57.424 40.909 15.78 10.71 36.83 2.85
4872 6235 2.747446 TCGGTACAGTACGGTAAGAACC 59.253 50.000 15.78 6.60 42.95 3.62
4882 6245 2.693267 GGTAAGAACCAGTAGGGCTG 57.307 55.000 0.00 0.00 45.98 4.85
4883 6246 1.407025 GGTAAGAACCAGTAGGGCTGC 60.407 57.143 0.00 0.00 45.98 5.25
4884 6247 1.278127 GTAAGAACCAGTAGGGCTGCA 59.722 52.381 0.50 0.00 43.71 4.41
5004 6371 1.210155 GGCGTGTGCACTTCAATCC 59.790 57.895 19.41 6.87 45.35 3.01
5027 6394 2.202797 CTCTGGGCATCACGTCGG 60.203 66.667 0.00 0.00 0.00 4.79
5063 6430 2.278854 GAAGCTGAGCTGATGTTCTCC 58.721 52.381 8.16 0.00 39.62 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.688073 TCTTGAAGAAGGATTAGACAAGGT 57.312 37.500 0.00 0.00 34.52 3.50
50 51 4.141846 ACATCGTAATCCACAGCTTCATCT 60.142 41.667 0.00 0.00 0.00 2.90
203 204 1.682854 TCCAACCTCGACTACAACGTT 59.317 47.619 0.00 0.00 0.00 3.99
365 367 4.985538 TCACTCAATCTAAACTGGCCTTT 58.014 39.130 3.32 0.00 0.00 3.11
371 373 4.825422 TGGAGCTCACTCAATCTAAACTG 58.175 43.478 17.19 0.00 45.42 3.16
749 754 3.108376 GGGCTTCTTCTTCTTCTCCCTA 58.892 50.000 0.00 0.00 0.00 3.53
751 756 1.406205 CGGGCTTCTTCTTCTTCTCCC 60.406 57.143 0.00 0.00 0.00 4.30
752 757 1.406205 CCGGGCTTCTTCTTCTTCTCC 60.406 57.143 0.00 0.00 0.00 3.71
791 796 6.767423 GTCTCGGAAAGAGGTAGTAGTAGATT 59.233 42.308 0.00 0.00 46.82 2.40
824 831 2.896443 GCTCGCTAGAAGCCCAGT 59.104 61.111 6.33 0.00 38.18 4.00
836 843 1.043224 GACACGATACATACGCTCGC 58.957 55.000 0.00 0.00 35.89 5.03
837 844 2.378507 TGACACGATACATACGCTCG 57.621 50.000 0.00 0.00 38.34 5.03
838 845 4.148563 AGATGACACGATACATACGCTC 57.851 45.455 0.00 0.00 0.00 5.03
839 846 4.276183 AGAAGATGACACGATACATACGCT 59.724 41.667 0.00 0.00 0.00 5.07
936 943 4.037803 TGCTGCTGCTGTTTCTTATTTGAA 59.962 37.500 17.00 0.00 40.48 2.69
937 944 3.569277 TGCTGCTGCTGTTTCTTATTTGA 59.431 39.130 17.00 0.00 40.48 2.69
942 949 2.033299 GTGTTGCTGCTGCTGTTTCTTA 59.967 45.455 17.00 0.00 40.48 2.10
973 988 0.600255 CTTGTTGGTTCTCGCGGAGT 60.600 55.000 6.13 0.00 0.00 3.85
978 993 1.971695 CCCCCTTGTTGGTTCTCGC 60.972 63.158 0.00 0.00 0.00 5.03
988 1003 1.570979 GGATTTCATCCTCCCCCTTGT 59.429 52.381 0.00 0.00 46.19 3.16
1034 1049 1.589414 AAAGGAGGAGGTAGCATGCT 58.411 50.000 25.99 25.99 0.00 3.79
1072 1368 2.572284 CCCGAACGAGACCAGACC 59.428 66.667 0.00 0.00 0.00 3.85
1181 1478 5.141182 GAGGTAGAGAGAGAGAGAGAGAGA 58.859 50.000 0.00 0.00 0.00 3.10
1198 1495 1.074872 GTTTCGGTTCGGCGAGGTAG 61.075 60.000 10.46 3.52 0.00 3.18
1230 1527 7.916077 ATTCCTAATTAGTACTGTAGCAGGT 57.084 36.000 11.50 0.00 35.51 4.00
1257 1560 2.496291 CGGGCCTCGGTAACCCTAG 61.496 68.421 0.84 0.00 41.86 3.02
1296 1600 5.266788 TCAATTCAATCAATCAAGGAGGCT 58.733 37.500 0.00 0.00 0.00 4.58
1297 1601 5.587388 TCAATTCAATCAATCAAGGAGGC 57.413 39.130 0.00 0.00 0.00 4.70
1345 1654 2.094390 TGAGCCGAACCACACTATGTAC 60.094 50.000 0.00 0.00 0.00 2.90
1348 1657 1.732259 GTTGAGCCGAACCACACTATG 59.268 52.381 0.00 0.00 0.00 2.23
1368 1677 3.012518 CCCCTCACTTGTCAAGCTTATG 58.987 50.000 12.66 3.72 0.00 1.90
1381 1692 3.662759 TGACAAGTTTTTCCCCTCACT 57.337 42.857 0.00 0.00 0.00 3.41
1422 1766 2.915604 ACTTCATGACTCCCCACTGAAT 59.084 45.455 0.00 0.00 0.00 2.57
1427 1771 2.863809 ACAAACTTCATGACTCCCCAC 58.136 47.619 0.00 0.00 0.00 4.61
1433 1777 3.567164 CAGGCTCAACAAACTTCATGACT 59.433 43.478 0.00 0.00 0.00 3.41
1438 1782 2.092429 AGGACAGGCTCAACAAACTTCA 60.092 45.455 0.00 0.00 0.00 3.02
1450 1794 5.306114 AGTTAAACACTTAAGGACAGGCT 57.694 39.130 7.53 0.00 27.32 4.58
1451 1795 5.529800 TCAAGTTAAACACTTAAGGACAGGC 59.470 40.000 7.53 0.00 44.60 4.85
1452 1796 7.562454 TTCAAGTTAAACACTTAAGGACAGG 57.438 36.000 7.53 0.00 44.60 4.00
1454 1798 9.403583 AGATTTCAAGTTAAACACTTAAGGACA 57.596 29.630 7.53 0.00 44.60 4.02
1466 1822 7.447238 CACCCTGGTTCTAGATTTCAAGTTAAA 59.553 37.037 0.00 0.00 0.00 1.52
1480 1836 1.668826 ATCCAAGCACCCTGGTTCTA 58.331 50.000 0.00 0.00 35.69 2.10
1482 1838 1.632589 AAATCCAAGCACCCTGGTTC 58.367 50.000 0.00 0.00 35.69 3.62
1493 1849 4.885413 TGGTGCTTCATGAAAAATCCAAG 58.115 39.130 9.88 0.00 0.00 3.61
1499 1855 6.596888 TGTCAAATTTGGTGCTTCATGAAAAA 59.403 30.769 17.90 7.12 0.00 1.94
1500 1856 6.111382 TGTCAAATTTGGTGCTTCATGAAAA 58.889 32.000 17.90 0.00 0.00 2.29
1501 1857 5.668471 TGTCAAATTTGGTGCTTCATGAAA 58.332 33.333 17.90 0.00 0.00 2.69
1502 1858 5.273674 TGTCAAATTTGGTGCTTCATGAA 57.726 34.783 17.90 8.12 0.00 2.57
1503 1859 4.796946 GCTGTCAAATTTGGTGCTTCATGA 60.797 41.667 17.90 0.00 0.00 3.07
1504 1860 3.430895 GCTGTCAAATTTGGTGCTTCATG 59.569 43.478 17.90 0.00 0.00 3.07
1523 2799 3.488721 GGTGCTTCATAGATTTGCAGCTG 60.489 47.826 10.11 10.11 45.14 4.24
1525 2801 3.075866 GGTGCTTCATAGATTTGCAGC 57.924 47.619 0.00 0.00 43.12 5.25
1535 2811 2.092646 ACGGGCAATTAGGTGCTTCATA 60.093 45.455 0.00 0.00 44.31 2.15
1540 2816 1.595093 GCAACGGGCAATTAGGTGCT 61.595 55.000 0.00 0.00 44.46 4.40
1541 2817 1.153842 GCAACGGGCAATTAGGTGC 60.154 57.895 0.00 0.00 43.97 5.01
1566 2850 7.495934 GTGCTGAACCACTAGAATATGTATGTT 59.504 37.037 0.00 0.00 33.02 2.71
1589 2873 2.309528 TATGTCGACAGGATTGGTGC 57.690 50.000 24.41 0.00 0.00 5.01
1598 2882 4.340097 TGGGTGTAAGGTATATGTCGACAG 59.660 45.833 24.41 0.00 0.00 3.51
1645 2930 8.497554 GCATTAACTCAAGCAAATGAAATCAAA 58.502 29.630 8.38 0.00 32.29 2.69
1646 2931 7.656542 TGCATTAACTCAAGCAAATGAAATCAA 59.343 29.630 8.38 0.00 33.48 2.57
1647 2932 7.153315 TGCATTAACTCAAGCAAATGAAATCA 58.847 30.769 8.38 0.00 33.48 2.57
1648 2933 7.585286 TGCATTAACTCAAGCAAATGAAATC 57.415 32.000 8.38 0.00 33.48 2.17
1649 2934 7.966246 TTGCATTAACTCAAGCAAATGAAAT 57.034 28.000 0.00 0.00 43.24 2.17
1687 2972 2.380064 TGTTCCAGAGGCAACCAAAT 57.620 45.000 0.00 0.00 37.17 2.32
1690 2975 2.364970 CAAATTGTTCCAGAGGCAACCA 59.635 45.455 0.00 0.00 37.17 3.67
1692 2977 4.525912 ATCAAATTGTTCCAGAGGCAAC 57.474 40.909 0.00 0.00 0.00 4.17
1693 2978 5.070180 TCAAATCAAATTGTTCCAGAGGCAA 59.930 36.000 0.00 0.00 0.00 4.52
1694 2979 4.588106 TCAAATCAAATTGTTCCAGAGGCA 59.412 37.500 0.00 0.00 0.00 4.75
1695 2980 5.138125 TCAAATCAAATTGTTCCAGAGGC 57.862 39.130 0.00 0.00 0.00 4.70
1696 2981 7.330208 GTCAATCAAATCAAATTGTTCCAGAGG 59.670 37.037 0.00 0.00 35.02 3.69
1697 2982 8.086522 AGTCAATCAAATCAAATTGTTCCAGAG 58.913 33.333 0.00 0.00 35.02 3.35
1698 2983 7.954835 AGTCAATCAAATCAAATTGTTCCAGA 58.045 30.769 0.00 0.00 35.02 3.86
1716 3011 9.503427 GTGTAAGGTAATTGCATTAAGTCAATC 57.497 33.333 2.17 0.00 35.84 2.67
1722 3017 6.405397 GGTGGGTGTAAGGTAATTGCATTAAG 60.405 42.308 2.17 0.00 35.84 1.85
1725 3020 3.767131 GGTGGGTGTAAGGTAATTGCATT 59.233 43.478 0.00 0.00 35.84 3.56
1752 3047 1.065358 CAAATCTTTTGCAGCGCCTG 58.935 50.000 2.29 2.69 34.12 4.85
1753 3048 0.961019 TCAAATCTTTTGCAGCGCCT 59.039 45.000 2.29 0.00 0.00 5.52
1756 3051 5.773239 ATCAAATCAAATCTTTTGCAGCG 57.227 34.783 0.00 0.00 33.77 5.18
1767 3062 8.949177 GGGCAACTAAATCAAATCAAATCAAAT 58.051 29.630 0.00 0.00 0.00 2.32
1768 3063 7.117523 CGGGCAACTAAATCAAATCAAATCAAA 59.882 33.333 0.00 0.00 0.00 2.69
1769 3064 6.589523 CGGGCAACTAAATCAAATCAAATCAA 59.410 34.615 0.00 0.00 0.00 2.57
1770 3065 6.098679 CGGGCAACTAAATCAAATCAAATCA 58.901 36.000 0.00 0.00 0.00 2.57
1771 3066 6.034898 CACGGGCAACTAAATCAAATCAAATC 59.965 38.462 0.00 0.00 0.00 2.17
1786 3081 1.537814 TATGTCGGACACGGGCAACT 61.538 55.000 13.92 0.00 41.39 3.16
1787 3082 0.461339 ATATGTCGGACACGGGCAAC 60.461 55.000 13.92 0.00 41.39 4.17
1793 3088 1.607148 TCCAGCTATATGTCGGACACG 59.393 52.381 13.92 3.80 42.74 4.49
1801 3096 7.498900 TCAAATCAAATCGTTCCAGCTATATGT 59.501 33.333 0.00 0.00 0.00 2.29
1814 3109 8.028354 TGCATTAACTCAATCAAATCAAATCGT 58.972 29.630 0.00 0.00 0.00 3.73
1815 3110 8.397215 TGCATTAACTCAATCAAATCAAATCG 57.603 30.769 0.00 0.00 0.00 3.34
1821 3116 9.807649 AGGTAATTGCATTAACTCAATCAAATC 57.192 29.630 0.00 0.00 38.34 2.17
1827 3122 8.466798 GGTGTAAGGTAATTGCATTAACTCAAT 58.533 33.333 2.17 0.00 41.72 2.57
1869 3164 4.853924 ACCAAATCAAATCTTTCGCAGT 57.146 36.364 0.00 0.00 0.00 4.40
1889 3184 8.863049 CCATGTTCTGCATTAACTCAATTAAAC 58.137 33.333 11.92 0.00 36.35 2.01
1906 3201 1.214305 TTCCCCTCCCCCATGTTCTG 61.214 60.000 0.00 0.00 0.00 3.02
1933 3228 3.516300 AGTTGGTGGTCATACGTCCATTA 59.484 43.478 0.00 0.00 36.09 1.90
1936 3231 1.274167 GAGTTGGTGGTCATACGTCCA 59.726 52.381 0.00 0.00 0.00 4.02
1981 3276 9.890629 TCATGTATAAGCACTCTTTAATGAACT 57.109 29.630 0.00 0.00 33.85 3.01
1985 3280 8.882736 TGTGTCATGTATAAGCACTCTTTAATG 58.117 33.333 0.00 0.00 33.85 1.90
1986 3281 9.618890 ATGTGTCATGTATAAGCACTCTTTAAT 57.381 29.630 0.00 0.00 33.85 1.40
2029 3324 7.228308 GCAGAGTCCTCTTGCTTTTATTATCAT 59.772 37.037 0.00 0.00 37.98 2.45
2042 3337 2.064762 CAACGAAGCAGAGTCCTCTTG 58.935 52.381 0.00 0.00 37.98 3.02
2071 3366 6.043127 AGGAAATCAAAAGGCAAAACACCTAT 59.957 34.615 0.00 0.00 36.14 2.57
2146 3441 6.267471 AGCTTTGATGGGAAACAAACTGATAA 59.733 34.615 0.00 0.00 33.42 1.75
2148 3443 4.590222 AGCTTTGATGGGAAACAAACTGAT 59.410 37.500 0.00 0.00 33.42 2.90
2160 3455 3.504863 CGAACAAATCAGCTTTGATGGG 58.495 45.455 3.71 0.00 45.96 4.00
2163 3458 2.557924 TGCCGAACAAATCAGCTTTGAT 59.442 40.909 3.71 0.00 45.96 2.57
2164 3459 1.952990 TGCCGAACAAATCAGCTTTGA 59.047 42.857 3.71 0.00 45.96 2.69
2166 3461 3.319755 CAATGCCGAACAAATCAGCTTT 58.680 40.909 0.00 0.00 32.40 3.51
2202 3499 6.723977 ACACCACCTTAATATTTGTTCCACAT 59.276 34.615 0.00 0.00 0.00 3.21
2212 3509 4.776349 TCGATGCACACCACCTTAATATT 58.224 39.130 0.00 0.00 0.00 1.28
2294 3591 9.865321 CTTGTTCAATCCAAGAATTACAATCAT 57.135 29.630 0.00 0.00 41.44 2.45
2310 3607 6.000891 TGAGCACACATAACTTGTTCAATC 57.999 37.500 0.00 0.00 36.00 2.67
2314 3611 5.821204 AGTTTGAGCACACATAACTTGTTC 58.179 37.500 0.00 0.00 36.00 3.18
2324 3621 4.458989 GGGATGATTTAGTTTGAGCACACA 59.541 41.667 0.00 0.00 0.00 3.72
2325 3622 4.142381 GGGGATGATTTAGTTTGAGCACAC 60.142 45.833 0.00 0.00 0.00 3.82
2328 3625 3.278574 CGGGGATGATTTAGTTTGAGCA 58.721 45.455 0.00 0.00 0.00 4.26
2348 3645 1.270252 GGAATTATGCATTTGGCCCCG 60.270 52.381 3.54 0.00 43.89 5.73
2349 3646 1.767681 TGGAATTATGCATTTGGCCCC 59.232 47.619 3.54 0.00 43.89 5.80
2350 3647 2.170187 TGTGGAATTATGCATTTGGCCC 59.830 45.455 3.54 1.12 43.89 5.80
2382 3679 1.340889 GGAGTTGTTCTTTGCATGGCA 59.659 47.619 0.00 0.00 36.47 4.92
2395 3692 3.388024 TGACTTTGTAGCTCAGGAGTTGT 59.612 43.478 0.00 0.00 0.00 3.32
2400 3697 5.012046 TGAGATTTGACTTTGTAGCTCAGGA 59.988 40.000 0.00 0.00 0.00 3.86
2403 3700 8.260114 TGATATGAGATTTGACTTTGTAGCTCA 58.740 33.333 0.00 0.00 35.84 4.26
2411 3708 9.593134 GTGACTAGTGATATGAGATTTGACTTT 57.407 33.333 0.00 0.00 0.00 2.66
2483 3780 1.472480 ACGCTCACAGTTGCTTGTTTT 59.528 42.857 0.00 0.00 0.00 2.43
2488 3785 2.546494 GCCACGCTCACAGTTGCTT 61.546 57.895 0.00 0.00 0.00 3.91
2506 3804 3.717294 CCTGTCCTTGGGTCCCCG 61.717 72.222 5.13 0.00 39.42 5.73
2507 3805 2.204090 TCCTGTCCTTGGGTCCCC 60.204 66.667 5.13 0.00 0.00 4.81
2534 3832 2.358737 GGCCACAAGTCCGACTGG 60.359 66.667 0.65 0.80 0.00 4.00
2536 3834 1.071471 CAAGGCCACAAGTCCGACT 59.929 57.895 5.01 0.00 0.00 4.18
2594 3893 4.702131 GGGCAAAAGATAGTCACTTCATGT 59.298 41.667 0.00 0.00 0.00 3.21
2601 3900 1.666189 GCTCGGGCAAAAGATAGTCAC 59.334 52.381 0.00 0.00 38.54 3.67
2617 3916 1.424493 GATGGAGTCCGCTTTGCTCG 61.424 60.000 4.30 0.00 0.00 5.03
2632 3931 2.203252 CCAGACATGGGCCGATGG 60.203 66.667 28.73 11.49 43.54 3.51
2639 3942 7.566593 GATGACGTATCTAGCCAGACATGGG 62.567 52.000 0.00 0.00 38.69 4.00
2657 3960 0.458370 TGCATCGAGTGGTGATGACG 60.458 55.000 7.12 0.00 44.76 4.35
2667 3971 1.572085 GCTGTTGTGCTGCATCGAGT 61.572 55.000 5.27 0.00 41.05 4.18
2686 3990 3.207669 GATTGCTGCCCAGGCTCG 61.208 66.667 10.58 2.27 42.51 5.03
2699 4003 2.148446 ATGGTGACCATGGGTGATTG 57.852 50.000 17.79 0.00 43.39 2.67
2714 4018 1.604593 GGTGGAGCAAGCACATGGT 60.605 57.895 0.00 0.00 0.00 3.55
2757 4061 0.754957 CCCAACCACAAAGTCTGGCA 60.755 55.000 0.00 0.00 31.13 4.92
2779 4085 6.425114 CAGTAGAACTGCACTTGTATGTTCTT 59.575 38.462 17.19 2.04 42.93 2.52
2780 4086 5.928839 CAGTAGAACTGCACTTGTATGTTCT 59.071 40.000 16.47 16.47 45.90 3.01
2781 4087 6.158175 CAGTAGAACTGCACTTGTATGTTC 57.842 41.667 4.96 4.96 39.62 3.18
2813 4119 5.228945 AGCACAAGTGGTATCTTTACTGT 57.771 39.130 2.65 0.00 39.83 3.55
2830 4144 8.896320 TCTAAGTTTATGTTTTCTGTAGCACA 57.104 30.769 0.00 0.00 0.00 4.57
2836 4150 8.682710 TGCACTTTCTAAGTTTATGTTTTCTGT 58.317 29.630 0.00 0.00 40.46 3.41
2837 4151 9.173939 CTGCACTTTCTAAGTTTATGTTTTCTG 57.826 33.333 0.00 0.00 40.46 3.02
2838 4152 8.903820 ACTGCACTTTCTAAGTTTATGTTTTCT 58.096 29.630 0.00 0.00 40.46 2.52
2839 4153 8.958043 CACTGCACTTTCTAAGTTTATGTTTTC 58.042 33.333 0.00 0.00 40.46 2.29
2840 4154 8.682710 TCACTGCACTTTCTAAGTTTATGTTTT 58.317 29.630 0.00 0.00 40.46 2.43
2841 4155 8.220755 TCACTGCACTTTCTAAGTTTATGTTT 57.779 30.769 0.00 0.00 40.46 2.83
2842 4156 7.801716 TCACTGCACTTTCTAAGTTTATGTT 57.198 32.000 0.00 0.00 40.46 2.71
2844 4158 8.119226 GCTATCACTGCACTTTCTAAGTTTATG 58.881 37.037 0.00 0.00 40.46 1.90
2845 4159 8.043710 AGCTATCACTGCACTTTCTAAGTTTAT 58.956 33.333 0.00 0.00 40.46 1.40
2847 4161 6.148480 CAGCTATCACTGCACTTTCTAAGTTT 59.852 38.462 0.00 0.00 40.46 2.66
2849 4163 5.047021 TCAGCTATCACTGCACTTTCTAAGT 60.047 40.000 0.00 0.00 38.16 2.24
2850 4164 5.414360 TCAGCTATCACTGCACTTTCTAAG 58.586 41.667 0.00 0.00 37.59 2.18
2851 4165 5.405935 TCAGCTATCACTGCACTTTCTAA 57.594 39.130 0.00 0.00 37.59 2.10
2852 4166 5.171476 GTTCAGCTATCACTGCACTTTCTA 58.829 41.667 0.00 0.00 37.59 2.10
2853 4167 3.969287 TCAGCTATCACTGCACTTTCT 57.031 42.857 0.00 0.00 37.59 2.52
2854 4168 3.748048 TGTTCAGCTATCACTGCACTTTC 59.252 43.478 0.00 0.00 35.23 2.62
2855 4169 3.499918 GTGTTCAGCTATCACTGCACTTT 59.500 43.478 7.54 0.00 35.23 2.66
2856 4170 3.070018 GTGTTCAGCTATCACTGCACTT 58.930 45.455 7.54 0.00 35.23 3.16
2860 4174 4.319333 GCATATGTGTTCAGCTATCACTGC 60.319 45.833 4.29 11.59 37.59 4.40
2861 4175 4.812626 TGCATATGTGTTCAGCTATCACTG 59.187 41.667 4.29 7.24 39.12 3.66
2882 4196 4.017126 AGTTTCTAAGTTTATGGGGCTGC 58.983 43.478 0.00 0.00 0.00 5.25
2906 4220 2.591429 CCTCGCACAAGCACACCA 60.591 61.111 0.00 0.00 42.27 4.17
2907 4221 3.357079 CCCTCGCACAAGCACACC 61.357 66.667 0.00 0.00 42.27 4.16
2930 4245 1.065854 ACCAGAAATCTCGGCCAAGAG 60.066 52.381 2.24 1.73 39.52 2.85
2932 4247 2.555199 CTACCAGAAATCTCGGCCAAG 58.445 52.381 2.24 0.00 0.00 3.61
2934 4249 0.178068 GCTACCAGAAATCTCGGCCA 59.822 55.000 2.24 0.00 0.00 5.36
2941 4256 1.664873 GGTTCCGGCTACCAGAAATC 58.335 55.000 17.70 0.00 35.67 2.17
2971 4286 5.318630 ACCGGTAATAATGTTTCTTGTGGT 58.681 37.500 4.49 0.00 0.00 4.16
3073 4388 0.902531 GTTCGAATCCTCCCAGTGGA 59.097 55.000 11.95 0.00 38.75 4.02
3088 4403 1.227263 CGCCTAGGTCATGGGTTCG 60.227 63.158 11.31 0.00 0.00 3.95
3115 4430 7.124147 AGGACGATTCAATGGTAAATTGGAATT 59.876 33.333 0.00 0.00 0.00 2.17
3122 4437 8.980481 AAATAGAGGACGATTCAATGGTAAAT 57.020 30.769 0.00 0.00 0.00 1.40
3123 4438 8.673711 CAAAATAGAGGACGATTCAATGGTAAA 58.326 33.333 0.00 0.00 0.00 2.01
3125 4440 6.260050 GCAAAATAGAGGACGATTCAATGGTA 59.740 38.462 0.00 0.00 0.00 3.25
3164 4479 7.979444 TTTAAGGACAGGACAAGTAATTCTG 57.021 36.000 0.00 0.00 0.00 3.02
3169 4484 8.846211 CAATCTTTTTAAGGACAGGACAAGTAA 58.154 33.333 0.00 0.00 0.00 2.24
3177 4494 9.762933 TTTGAATTCAATCTTTTTAAGGACAGG 57.237 29.630 21.10 0.00 35.55 4.00
3232 4549 3.431766 CCAACGGTTACAGGGAATCTAGG 60.432 52.174 0.00 0.00 0.00 3.02
3260 4577 1.524002 GAGGGTTAACGGTAGGCCC 59.476 63.158 12.72 12.72 39.60 5.80
3308 4626 2.689553 AAAACAGCACAAACCAAGGG 57.310 45.000 0.00 0.00 0.00 3.95
3310 4628 7.437862 ACACATATAAAAACAGCACAAACCAAG 59.562 33.333 0.00 0.00 0.00 3.61
3311 4629 7.268586 ACACATATAAAAACAGCACAAACCAA 58.731 30.769 0.00 0.00 0.00 3.67
3312 4630 6.810911 ACACATATAAAAACAGCACAAACCA 58.189 32.000 0.00 0.00 0.00 3.67
3313 4631 7.651704 AGAACACATATAAAAACAGCACAAACC 59.348 33.333 0.00 0.00 0.00 3.27
3337 4657 6.320164 GGATAGACTCTTCTAACAGCAAGAGA 59.680 42.308 14.25 0.00 45.93 3.10
3348 4668 3.945921 CCACACACGGATAGACTCTTCTA 59.054 47.826 0.00 0.00 38.76 2.10
3356 4676 4.900684 TCAAATTTCCACACACGGATAGA 58.099 39.130 0.00 0.00 34.19 1.98
3361 4681 3.004210 TGACATCAAATTTCCACACACGG 59.996 43.478 0.00 0.00 0.00 4.94
3362 4682 4.221342 CTGACATCAAATTTCCACACACG 58.779 43.478 0.00 0.00 0.00 4.49
3364 4684 4.278170 GTCCTGACATCAAATTTCCACACA 59.722 41.667 0.00 0.00 0.00 3.72
3367 4687 3.502211 ACGTCCTGACATCAAATTTCCAC 59.498 43.478 0.00 0.00 0.00 4.02
3371 4691 6.391227 AGAAAACGTCCTGACATCAAATTT 57.609 33.333 0.00 0.00 0.00 1.82
3381 4701 7.540299 ACAAATAAACAAAGAAAACGTCCTGA 58.460 30.769 0.00 0.00 0.00 3.86
3401 4721 9.480053 CCTAACATGACAAAATTCTTGACAAAT 57.520 29.630 0.00 2.81 0.00 2.32
3402 4722 8.474025 ACCTAACATGACAAAATTCTTGACAAA 58.526 29.630 0.00 0.00 0.00 2.83
3417 4737 6.985188 ACATACAATGTCACCTAACATGAC 57.015 37.500 0.00 0.00 45.58 3.06
3423 4743 6.892658 AAGCAAACATACAATGTCACCTAA 57.107 33.333 0.00 0.00 44.07 2.69
3425 4745 5.789643 AAAGCAAACATACAATGTCACCT 57.210 34.783 0.00 0.00 44.07 4.00
3434 4754 5.349817 CCACACAAACAAAAGCAAACATACA 59.650 36.000 0.00 0.00 0.00 2.29
3435 4755 5.350091 ACCACACAAACAAAAGCAAACATAC 59.650 36.000 0.00 0.00 0.00 2.39
3436 4756 5.482908 ACCACACAAACAAAAGCAAACATA 58.517 33.333 0.00 0.00 0.00 2.29
3437 4757 4.322567 ACCACACAAACAAAAGCAAACAT 58.677 34.783 0.00 0.00 0.00 2.71
3438 4758 3.733337 ACCACACAAACAAAAGCAAACA 58.267 36.364 0.00 0.00 0.00 2.83
3439 4759 3.181535 CGACCACACAAACAAAAGCAAAC 60.182 43.478 0.00 0.00 0.00 2.93
3440 4760 2.989840 CGACCACACAAACAAAAGCAAA 59.010 40.909 0.00 0.00 0.00 3.68
3441 4761 2.600731 CGACCACACAAACAAAAGCAA 58.399 42.857 0.00 0.00 0.00 3.91
3442 4762 1.734047 GCGACCACACAAACAAAAGCA 60.734 47.619 0.00 0.00 0.00 3.91
3443 4763 0.920664 GCGACCACACAAACAAAAGC 59.079 50.000 0.00 0.00 0.00 3.51
3444 4764 2.559998 AGCGACCACACAAACAAAAG 57.440 45.000 0.00 0.00 0.00 2.27
3445 4765 2.229062 TGAAGCGACCACACAAACAAAA 59.771 40.909 0.00 0.00 0.00 2.44
3446 4766 1.813178 TGAAGCGACCACACAAACAAA 59.187 42.857 0.00 0.00 0.00 2.83
3447 4767 1.454201 TGAAGCGACCACACAAACAA 58.546 45.000 0.00 0.00 0.00 2.83
3448 4768 1.454201 TTGAAGCGACCACACAAACA 58.546 45.000 0.00 0.00 0.00 2.83
3449 4769 2.032799 TGATTGAAGCGACCACACAAAC 59.967 45.455 0.00 0.00 0.00 2.93
3450 4770 2.290367 CTGATTGAAGCGACCACACAAA 59.710 45.455 0.00 0.00 0.00 2.83
3451 4771 1.872952 CTGATTGAAGCGACCACACAA 59.127 47.619 0.00 0.00 0.00 3.33
3452 4772 1.511850 CTGATTGAAGCGACCACACA 58.488 50.000 0.00 0.00 0.00 3.72
3453 4773 0.166814 GCTGATTGAAGCGACCACAC 59.833 55.000 0.00 0.00 32.56 3.82
3454 4774 0.955428 GGCTGATTGAAGCGACCACA 60.955 55.000 0.00 0.00 44.52 4.17
3455 4775 0.674895 AGGCTGATTGAAGCGACCAC 60.675 55.000 0.00 0.00 44.52 4.16
3456 4776 0.674581 CAGGCTGATTGAAGCGACCA 60.675 55.000 9.42 0.00 44.52 4.02
3457 4777 0.674895 ACAGGCTGATTGAAGCGACC 60.675 55.000 23.66 0.00 44.52 4.79
3458 4778 1.160137 AACAGGCTGATTGAAGCGAC 58.840 50.000 23.66 0.00 44.52 5.19
3459 4779 1.536766 CAAACAGGCTGATTGAAGCGA 59.463 47.619 27.58 0.00 44.52 4.93
3460 4780 1.267806 ACAAACAGGCTGATTGAAGCG 59.732 47.619 34.90 15.27 44.52 4.68
3461 4781 2.669364 CACAAACAGGCTGATTGAAGC 58.331 47.619 34.90 0.00 42.75 3.86
3462 4782 2.034939 TGCACAAACAGGCTGATTGAAG 59.965 45.455 34.90 27.14 34.33 3.02
3463 4783 2.030371 TGCACAAACAGGCTGATTGAA 58.970 42.857 34.90 20.70 34.33 2.69
3464 4784 1.689984 TGCACAAACAGGCTGATTGA 58.310 45.000 34.90 16.54 34.33 2.57
3465 4785 2.512485 TTGCACAAACAGGCTGATTG 57.488 45.000 29.07 29.07 36.40 2.67
3466 4786 3.181463 ACATTTGCACAAACAGGCTGATT 60.181 39.130 23.66 13.62 32.51 2.57
3467 4787 2.366266 ACATTTGCACAAACAGGCTGAT 59.634 40.909 23.66 6.45 32.51 2.90
3468 4788 1.755959 ACATTTGCACAAACAGGCTGA 59.244 42.857 23.66 0.00 32.51 4.26
3469 4789 2.228138 ACATTTGCACAAACAGGCTG 57.772 45.000 14.16 14.16 32.51 4.85
3470 4790 4.605640 AATACATTTGCACAAACAGGCT 57.394 36.364 0.00 0.00 32.51 4.58
3471 4791 5.671742 AAAATACATTTGCACAAACAGGC 57.328 34.783 0.00 0.00 32.51 4.85
3515 4835 9.436957 GTTTTACTTCTCCAGTTTCATCATCTA 57.563 33.333 0.00 0.00 36.88 1.98
3526 4846 4.272748 GCGACTTTGTTTTACTTCTCCAGT 59.727 41.667 0.00 0.00 39.87 4.00
3527 4847 4.511826 AGCGACTTTGTTTTACTTCTCCAG 59.488 41.667 0.00 0.00 0.00 3.86
3547 4867 1.529226 TGGTTGGGTGACAAATAGCG 58.471 50.000 0.00 0.00 41.58 4.26
3555 4875 0.883370 GACTCGGTTGGTTGGGTGAC 60.883 60.000 0.00 0.00 0.00 3.67
3566 4886 4.956700 TCTGGAGAATAGAATGACTCGGTT 59.043 41.667 0.00 0.00 0.00 4.44
3568 4888 4.824537 TCTCTGGAGAATAGAATGACTCGG 59.175 45.833 0.00 0.00 33.91 4.63
3581 4901 7.155328 GTCAGTTTGAGTAAATCTCTGGAGAA 58.845 38.462 4.34 0.00 43.13 2.87
3608 4928 7.445707 GTCAGGGTCTAAAAGTTTCTCAAATCT 59.554 37.037 0.00 0.00 0.00 2.40
3641 4961 0.392193 AGCAGAGAGGGAAATGCACG 60.392 55.000 0.00 0.00 41.14 5.34
3642 4962 1.093159 CAGCAGAGAGGGAAATGCAC 58.907 55.000 0.00 0.00 41.14 4.57
3678 5002 6.483307 GGAGCAGCATACATACAAACAGATAA 59.517 38.462 0.00 0.00 0.00 1.75
3689 5015 5.181811 GCATAATGTTGGAGCAGCATACATA 59.818 40.000 0.00 0.00 34.38 2.29
3692 5018 3.304928 GGCATAATGTTGGAGCAGCATAC 60.305 47.826 0.00 0.00 34.38 2.39
3776 5102 7.984617 GTCTTGAGATATGCTTACTTCCTCTTT 59.015 37.037 0.00 0.00 0.00 2.52
3799 5125 4.074970 GGAACAAACATCATGTCTGGTCT 58.925 43.478 9.06 0.00 35.47 3.85
3800 5126 4.074970 AGGAACAAACATCATGTCTGGTC 58.925 43.478 0.00 0.00 34.42 4.02
3801 5127 4.104383 AGGAACAAACATCATGTCTGGT 57.896 40.909 0.00 0.00 0.00 4.00
3802 5128 5.458041 AAAGGAACAAACATCATGTCTGG 57.542 39.130 0.00 0.00 0.00 3.86
3806 5132 9.859427 CACAATATAAAGGAACAAACATCATGT 57.141 29.630 0.00 0.00 0.00 3.21
3807 5133 8.810427 GCACAATATAAAGGAACAAACATCATG 58.190 33.333 0.00 0.00 0.00 3.07
3808 5134 8.530311 TGCACAATATAAAGGAACAAACATCAT 58.470 29.630 0.00 0.00 0.00 2.45
3809 5135 7.890515 TGCACAATATAAAGGAACAAACATCA 58.109 30.769 0.00 0.00 0.00 3.07
3810 5136 8.647226 GTTGCACAATATAAAGGAACAAACATC 58.353 33.333 0.00 0.00 33.32 3.06
3814 5140 7.055667 TGGTTGCACAATATAAAGGAACAAA 57.944 32.000 0.00 0.00 34.54 2.83
3815 5141 6.656632 TGGTTGCACAATATAAAGGAACAA 57.343 33.333 0.00 0.00 34.54 2.83
3818 5144 7.473735 TCAATGGTTGCACAATATAAAGGAA 57.526 32.000 0.00 0.00 0.00 3.36
3820 5146 7.490840 TCATCAATGGTTGCACAATATAAAGG 58.509 34.615 0.00 0.00 0.00 3.11
3821 5147 9.537192 AATCATCAATGGTTGCACAATATAAAG 57.463 29.630 0.00 0.00 28.16 1.85
3822 5148 9.315525 CAATCATCAATGGTTGCACAATATAAA 57.684 29.630 3.20 0.00 41.42 1.40
3834 5160 6.766944 TCAAAAACAAGCAATCATCAATGGTT 59.233 30.769 0.00 0.00 37.73 3.67
3835 5161 6.289834 TCAAAAACAAGCAATCATCAATGGT 58.710 32.000 0.00 0.00 0.00 3.55
3836 5162 6.788684 TCAAAAACAAGCAATCATCAATGG 57.211 33.333 0.00 0.00 0.00 3.16
3837 5163 7.270365 GCAATCAAAAACAAGCAATCATCAATG 59.730 33.333 0.00 0.00 0.00 2.82
3844 5174 4.512571 ACCTGCAATCAAAAACAAGCAATC 59.487 37.500 0.00 0.00 0.00 2.67
3856 5186 2.554344 GGAACCAGGTACCTGCAATCAA 60.554 50.000 32.98 0.00 42.35 2.57
3878 5208 1.004628 TGCCCAACTAGCATGTCACAT 59.995 47.619 0.00 0.00 34.69 3.21
3889 5219 4.462483 GGATGAAAATGAACTGCCCAACTA 59.538 41.667 0.00 0.00 0.00 2.24
3941 5271 0.863957 CAAACACGAAAAGCGCCGTT 60.864 50.000 2.29 0.00 46.04 4.44
3963 5293 1.630878 TGTTTGGGGCAAGGTGTTTTT 59.369 42.857 0.00 0.00 0.00 1.94
3964 5294 1.209261 CTGTTTGGGGCAAGGTGTTTT 59.791 47.619 0.00 0.00 0.00 2.43
3965 5295 0.829990 CTGTTTGGGGCAAGGTGTTT 59.170 50.000 0.00 0.00 0.00 2.83
3980 5310 5.079643 ACATGGATTAAAAGCTCACCTGTT 58.920 37.500 0.00 0.00 0.00 3.16
3983 5313 4.702131 GTGACATGGATTAAAAGCTCACCT 59.298 41.667 0.00 0.00 0.00 4.00
3990 5320 2.687935 CCCCGGTGACATGGATTAAAAG 59.312 50.000 0.00 0.00 0.00 2.27
3994 5324 3.015212 ACCCCGGTGACATGGATTA 57.985 52.632 0.00 0.00 0.00 1.75
4008 5338 4.054825 CATGCGCAACACCACCCC 62.055 66.667 17.11 0.00 0.00 4.95
4009 5339 3.267597 GACATGCGCAACACCACCC 62.268 63.158 17.11 0.00 0.00 4.61
4010 5340 2.255252 GACATGCGCAACACCACC 59.745 61.111 17.11 0.00 0.00 4.61
4011 5341 1.865788 ATGGACATGCGCAACACCAC 61.866 55.000 26.37 12.42 0.00 4.16
4021 5351 4.558470 CGACAAATTTACACATGGACATGC 59.442 41.667 11.96 0.00 42.39 4.06
4025 5355 5.753744 TGTTCGACAAATTTACACATGGAC 58.246 37.500 0.00 0.00 0.00 4.02
4026 5356 6.378710 TTGTTCGACAAATTTACACATGGA 57.621 33.333 0.00 0.00 34.76 3.41
4027 5357 7.636259 AATTGTTCGACAAATTTACACATGG 57.364 32.000 0.00 0.00 41.96 3.66
4028 5358 9.913451 AAAAATTGTTCGACAAATTTACACATG 57.087 25.926 14.44 0.00 39.48 3.21
4132 5476 2.104111 TGTCACCCAAATGTCTTCTCGT 59.896 45.455 0.00 0.00 0.00 4.18
4175 5519 7.601508 GTGCACTACACTTAGTATTTTAGGTGT 59.398 37.037 10.32 6.26 46.41 4.16
4176 5520 7.960793 GTGCACTACACTTAGTATTTTAGGTG 58.039 38.462 10.32 0.00 46.41 4.00
4192 5536 0.327924 CTGGGATTGGGTGCACTACA 59.672 55.000 17.98 13.50 0.00 2.74
4267 5611 8.879759 CAAGTAAAATAAACTAGAGATCGGCAA 58.120 33.333 0.00 0.00 0.00 4.52
4299 5645 2.477825 CGGGAGCAATACAGATGTGAG 58.522 52.381 0.00 0.00 0.00 3.51
4474 5824 6.455360 ACTTGTCATCACAATCAACACTTT 57.545 33.333 0.00 0.00 41.82 2.66
4521 5871 0.524816 CGCACATGAGCTTGGAATGC 60.525 55.000 13.36 1.48 37.24 3.56
4526 5876 1.372582 ATGTACGCACATGAGCTTGG 58.627 50.000 13.36 0.46 43.89 3.61
4636 5996 4.443621 GGTCTCCAAGCCAACTCTTATAC 58.556 47.826 0.00 0.00 0.00 1.47
4648 6008 1.672356 ATGTGCACGGTCTCCAAGC 60.672 57.895 13.13 0.00 0.00 4.01
4703 6063 4.039730 TGGGCTTAAGTGCTAAAAATTGCA 59.960 37.500 4.02 0.00 36.79 4.08
4704 6064 4.565022 TGGGCTTAAGTGCTAAAAATTGC 58.435 39.130 4.02 0.00 0.00 3.56
4705 6065 5.581874 CCATGGGCTTAAGTGCTAAAAATTG 59.418 40.000 2.85 0.00 0.00 2.32
4706 6066 5.338300 CCCATGGGCTTAAGTGCTAAAAATT 60.338 40.000 20.41 0.00 0.00 1.82
4707 6067 4.162131 CCCATGGGCTTAAGTGCTAAAAAT 59.838 41.667 20.41 0.00 0.00 1.82
4708 6068 3.513515 CCCATGGGCTTAAGTGCTAAAAA 59.486 43.478 20.41 0.00 0.00 1.94
4709 6069 3.096092 CCCATGGGCTTAAGTGCTAAAA 58.904 45.455 20.41 0.00 0.00 1.52
4710 6070 2.622977 CCCCATGGGCTTAAGTGCTAAA 60.623 50.000 26.87 0.00 35.35 1.85
4711 6071 1.064017 CCCCATGGGCTTAAGTGCTAA 60.064 52.381 26.87 0.00 35.35 3.09
4712 6072 0.550914 CCCCATGGGCTTAAGTGCTA 59.449 55.000 26.87 0.00 35.35 3.49
4713 6073 1.214305 TCCCCATGGGCTTAAGTGCT 61.214 55.000 26.87 0.00 43.94 4.40
4714 6074 0.106015 ATCCCCATGGGCTTAAGTGC 60.106 55.000 26.87 0.00 43.94 4.40
4715 6075 2.431782 CAAATCCCCATGGGCTTAAGTG 59.568 50.000 26.87 13.41 43.94 3.16
4716 6076 2.044353 ACAAATCCCCATGGGCTTAAGT 59.956 45.455 26.87 16.94 43.94 2.24
4717 6077 2.750814 ACAAATCCCCATGGGCTTAAG 58.249 47.619 26.87 16.28 43.94 1.85
4718 6078 2.938428 ACAAATCCCCATGGGCTTAA 57.062 45.000 26.87 10.50 43.94 1.85
4719 6079 2.424234 GCTACAAATCCCCATGGGCTTA 60.424 50.000 26.87 13.20 43.94 3.09
4720 6080 1.689258 GCTACAAATCCCCATGGGCTT 60.689 52.381 26.87 17.51 43.94 4.35
4721 6081 0.106015 GCTACAAATCCCCATGGGCT 60.106 55.000 26.87 11.98 43.94 5.19
4722 6082 1.115326 GGCTACAAATCCCCATGGGC 61.115 60.000 26.87 10.31 43.94 5.36
4723 6083 0.469892 GGGCTACAAATCCCCATGGG 60.470 60.000 25.30 25.30 46.11 4.00
4724 6084 0.261402 TGGGCTACAAATCCCCATGG 59.739 55.000 4.14 4.14 43.67 3.66
4725 6085 3.922426 TGGGCTACAAATCCCCATG 57.078 52.632 0.00 0.00 43.67 3.66
4727 6087 1.202099 TCGTGGGCTACAAATCCCCA 61.202 55.000 0.88 0.00 46.24 4.96
4728 6088 0.463833 CTCGTGGGCTACAAATCCCC 60.464 60.000 0.88 0.00 41.92 4.81
4765 6125 6.694411 CACATTTGAAGTTCAGTTTCCAGAAG 59.306 38.462 5.56 0.00 0.00 2.85
4770 6130 5.043248 CACCACATTTGAAGTTCAGTTTCC 58.957 41.667 5.56 0.00 0.00 3.13
4836 6199 4.888917 TGTACCGACAAAATCAGACATCA 58.111 39.130 0.00 0.00 30.68 3.07
4873 6236 2.689034 GTCCCCTGCAGCCCTACT 60.689 66.667 8.66 0.00 0.00 2.57
4874 6237 3.009115 TGTCCCCTGCAGCCCTAC 61.009 66.667 8.66 4.03 0.00 3.18
4875 6238 3.009115 GTGTCCCCTGCAGCCCTA 61.009 66.667 8.66 0.00 0.00 3.53
4876 6239 4.990910 AGTGTCCCCTGCAGCCCT 62.991 66.667 8.66 0.00 0.00 5.19
4877 6240 4.729918 CAGTGTCCCCTGCAGCCC 62.730 72.222 8.66 0.00 0.00 5.19
4878 6241 4.729918 CCAGTGTCCCCTGCAGCC 62.730 72.222 8.66 0.00 0.00 4.85
4879 6242 2.490270 AATCCAGTGTCCCCTGCAGC 62.490 60.000 8.66 0.00 0.00 5.25
4880 6243 0.038744 AAATCCAGTGTCCCCTGCAG 59.961 55.000 6.78 6.78 0.00 4.41
4881 6244 1.004277 GTAAATCCAGTGTCCCCTGCA 59.996 52.381 0.00 0.00 0.00 4.41
4882 6245 1.004277 TGTAAATCCAGTGTCCCCTGC 59.996 52.381 0.00 0.00 0.00 4.85
4883 6246 3.433306 TTGTAAATCCAGTGTCCCCTG 57.567 47.619 0.00 0.00 0.00 4.45
4884 6247 3.655777 TCTTTGTAAATCCAGTGTCCCCT 59.344 43.478 0.00 0.00 0.00 4.79
5004 6371 0.742281 CGTGATGCCCAGAGAAGTGG 60.742 60.000 0.00 0.00 37.34 4.00
5027 6394 0.868406 CTTCACTGTTCTTCGTGGGC 59.132 55.000 0.00 0.00 0.00 5.36
5030 6397 2.937994 CAGCTTCACTGTTCTTCGTG 57.062 50.000 0.00 0.00 41.86 4.35
5042 6409 2.354503 GGAGAACATCAGCTCAGCTTCA 60.355 50.000 0.00 0.00 36.40 3.02
5051 6418 3.484407 AGCATAATGGGAGAACATCAGC 58.516 45.455 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.