Multiple sequence alignment - TraesCS5B01G154800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G154800 chr5B 100.000 2780 0 0 1 2780 285498160 285500939 0.000000e+00 5134.0
1 TraesCS5B01G154800 chr5B 95.798 119 5 0 1 119 404014237 404014355 2.830000e-45 193.0
2 TraesCS5B01G154800 chr5A 96.571 1633 46 5 832 2461 335672024 335673649 0.000000e+00 2697.0
3 TraesCS5B01G154800 chr5A 95.963 322 13 0 2459 2780 335673689 335674010 8.820000e-145 523.0
4 TraesCS5B01G154800 chr5A 82.686 618 76 16 124 718 335671413 335672022 1.140000e-143 520.0
5 TraesCS5B01G154800 chr5A 79.009 343 61 10 126 465 449246355 449246689 1.000000e-54 224.0
6 TraesCS5B01G154800 chr5A 83.784 111 18 0 127 237 35167123 35167233 3.790000e-19 106.0
7 TraesCS5B01G154800 chr5D 96.363 1622 52 4 843 2461 253177783 253179400 0.000000e+00 2662.0
8 TraesCS5B01G154800 chr5D 95.963 322 13 0 2459 2780 253179440 253179761 8.820000e-145 523.0
9 TraesCS5B01G154800 chr5D 86.623 456 52 8 124 575 253175418 253175868 1.920000e-136 496.0
10 TraesCS5B01G154800 chr5D 92.308 91 7 0 601 691 26253082 26252992 2.250000e-26 130.0
11 TraesCS5B01G154800 chr6B 96.667 120 4 0 1 120 589187120 589187239 1.690000e-47 200.0
12 TraesCS5B01G154800 chr3B 95.041 121 6 0 1 121 644757574 644757694 1.020000e-44 191.0
13 TraesCS5B01G154800 chr1B 95.041 121 6 0 1 121 149754653 149754533 1.020000e-44 191.0
14 TraesCS5B01G154800 chr1B 95.000 120 6 0 1 120 355621353 355621234 3.660000e-44 189.0
15 TraesCS5B01G154800 chr1B 95.000 120 6 0 1 120 452561089 452561208 3.660000e-44 189.0
16 TraesCS5B01G154800 chr1B 94.167 120 7 0 1 120 623087556 623087437 1.700000e-42 183.0
17 TraesCS5B01G154800 chr1B 84.971 173 24 2 582 753 317317609 317317438 1.020000e-39 174.0
18 TraesCS5B01G154800 chr4B 95.614 114 5 0 7 120 464574234 464574121 1.700000e-42 183.0
19 TraesCS5B01G154800 chr4B 94.167 120 7 0 1 120 597067055 597066936 1.700000e-42 183.0
20 TraesCS5B01G154800 chr2D 79.570 186 27 5 582 766 373438080 373438255 3.760000e-24 122.0
21 TraesCS5B01G154800 chr2D 85.507 69 10 0 653 721 643188240 643188172 3.840000e-09 73.1
22 TraesCS5B01G154800 chr4D 84.404 109 15 2 625 731 480294409 480294517 3.790000e-19 106.0
23 TraesCS5B01G154800 chr4D 86.765 68 9 0 625 692 57218825 57218892 2.970000e-10 76.8
24 TraesCS5B01G154800 chr1A 88.889 81 9 0 602 682 252823991 252824071 1.760000e-17 100.0
25 TraesCS5B01G154800 chr7D 83.333 102 8 1 591 692 613929778 613929686 4.930000e-13 86.1
26 TraesCS5B01G154800 chr1D 77.660 94 18 2 600 692 379510400 379510309 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G154800 chr5B 285498160 285500939 2779 False 5134.000000 5134 100.000 1 2780 1 chr5B.!!$F1 2779
1 TraesCS5B01G154800 chr5A 335671413 335674010 2597 False 1246.666667 2697 91.740 124 2780 3 chr5A.!!$F3 2656
2 TraesCS5B01G154800 chr5D 253175418 253179761 4343 False 1227.000000 2662 92.983 124 2780 3 chr5D.!!$F1 2656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.038310 GTTGCCTGTTCCTTAGGGCT 59.962 55.0 0.00 0.0 44.36 5.19 F
171 172 0.106719 CAAACCCACGGGCCTATCAT 60.107 55.0 0.84 0.0 39.32 2.45 F
762 811 0.321653 GTTCGGTGCTGTTCAGGGAT 60.322 55.0 1.97 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1647 3299 1.185618 CGTCCACCTCCTTCCTCACA 61.186 60.000 0.00 0.00 0.00 3.58 R
1697 3349 2.186384 GAGCGATCAGGTGCAGCT 59.814 61.111 13.85 13.85 41.29 4.24 R
2354 4006 1.808411 ATTAGACTGCCACACCAACG 58.192 50.000 0.00 0.00 0.00 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.036577 TTCGTCGTCGTCAAGGCT 58.963 55.556 1.33 0.00 38.33 4.58
18 19 1.081641 TTCGTCGTCGTCAAGGCTC 60.082 57.895 1.33 0.00 38.33 4.70
19 20 1.788067 TTCGTCGTCGTCAAGGCTCA 61.788 55.000 1.33 0.00 38.33 4.26
20 21 2.081212 CGTCGTCGTCAAGGCTCAC 61.081 63.158 0.00 0.00 0.00 3.51
21 22 1.286260 GTCGTCGTCAAGGCTCACT 59.714 57.895 0.00 0.00 0.00 3.41
22 23 0.318784 GTCGTCGTCAAGGCTCACTT 60.319 55.000 0.00 0.00 41.00 3.16
23 24 0.039437 TCGTCGTCAAGGCTCACTTC 60.039 55.000 0.00 0.00 37.29 3.01
24 25 1.337817 CGTCGTCAAGGCTCACTTCG 61.338 60.000 0.00 0.00 37.29 3.79
25 26 0.318784 GTCGTCAAGGCTCACTTCGT 60.319 55.000 0.00 0.00 37.29 3.85
26 27 0.039437 TCGTCAAGGCTCACTTCGTC 60.039 55.000 0.00 0.00 37.29 4.20
27 28 0.039074 CGTCAAGGCTCACTTCGTCT 60.039 55.000 0.00 0.00 37.29 4.18
28 29 1.603172 CGTCAAGGCTCACTTCGTCTT 60.603 52.381 0.00 0.00 37.29 3.01
29 30 2.484889 GTCAAGGCTCACTTCGTCTTT 58.515 47.619 0.00 0.00 37.29 2.52
30 31 2.221981 GTCAAGGCTCACTTCGTCTTTG 59.778 50.000 0.00 0.00 37.29 2.77
31 32 1.532868 CAAGGCTCACTTCGTCTTTGG 59.467 52.381 0.00 0.00 37.29 3.28
32 33 1.048601 AGGCTCACTTCGTCTTTGGA 58.951 50.000 0.00 0.00 0.00 3.53
33 34 1.001406 AGGCTCACTTCGTCTTTGGAG 59.999 52.381 0.00 0.00 0.00 3.86
34 35 1.000955 GGCTCACTTCGTCTTTGGAGA 59.999 52.381 0.00 0.00 0.00 3.71
35 36 2.333014 GCTCACTTCGTCTTTGGAGAG 58.667 52.381 0.00 0.00 31.07 3.20
36 37 2.029828 GCTCACTTCGTCTTTGGAGAGA 60.030 50.000 0.00 0.00 31.07 3.10
37 38 3.832276 CTCACTTCGTCTTTGGAGAGAG 58.168 50.000 0.00 0.00 31.07 3.20
38 39 2.558795 TCACTTCGTCTTTGGAGAGAGG 59.441 50.000 0.00 0.00 33.88 3.69
39 40 1.273886 ACTTCGTCTTTGGAGAGAGGC 59.726 52.381 0.00 0.00 32.91 4.70
40 41 1.273606 CTTCGTCTTTGGAGAGAGGCA 59.726 52.381 0.00 0.00 32.91 4.75
41 42 1.561643 TCGTCTTTGGAGAGAGGCAT 58.438 50.000 0.00 0.00 32.91 4.40
42 43 1.205655 TCGTCTTTGGAGAGAGGCATG 59.794 52.381 0.00 0.00 32.91 4.06
43 44 1.741732 CGTCTTTGGAGAGAGGCATGG 60.742 57.143 0.00 0.00 31.07 3.66
44 45 1.556911 GTCTTTGGAGAGAGGCATGGA 59.443 52.381 0.00 0.00 31.07 3.41
45 46 2.026822 GTCTTTGGAGAGAGGCATGGAA 60.027 50.000 0.00 0.00 31.07 3.53
46 47 2.848694 TCTTTGGAGAGAGGCATGGAAT 59.151 45.455 0.00 0.00 0.00 3.01
47 48 3.267812 TCTTTGGAGAGAGGCATGGAATT 59.732 43.478 0.00 0.00 0.00 2.17
48 49 4.474651 TCTTTGGAGAGAGGCATGGAATTA 59.525 41.667 0.00 0.00 0.00 1.40
49 50 5.133322 TCTTTGGAGAGAGGCATGGAATTAT 59.867 40.000 0.00 0.00 0.00 1.28
50 51 4.630644 TGGAGAGAGGCATGGAATTATC 57.369 45.455 0.00 0.00 0.00 1.75
51 52 3.975982 TGGAGAGAGGCATGGAATTATCA 59.024 43.478 0.00 0.00 0.00 2.15
52 53 4.600547 TGGAGAGAGGCATGGAATTATCAT 59.399 41.667 0.00 0.00 0.00 2.45
53 54 5.184711 GGAGAGAGGCATGGAATTATCATC 58.815 45.833 0.00 0.00 0.00 2.92
54 55 5.176741 AGAGAGGCATGGAATTATCATCC 57.823 43.478 0.00 0.00 37.48 3.51
55 56 4.850963 AGAGAGGCATGGAATTATCATCCT 59.149 41.667 0.00 9.71 37.85 3.24
56 57 5.045724 AGAGAGGCATGGAATTATCATCCTC 60.046 44.000 18.81 18.81 38.16 3.71
57 58 4.850963 AGAGGCATGGAATTATCATCCTCT 59.149 41.667 20.87 20.87 40.37 3.69
58 59 4.919793 AGGCATGGAATTATCATCCTCTG 58.080 43.478 0.00 0.00 37.85 3.35
59 60 4.600547 AGGCATGGAATTATCATCCTCTGA 59.399 41.667 0.00 0.00 37.85 3.27
60 61 5.253330 AGGCATGGAATTATCATCCTCTGAT 59.747 40.000 0.00 0.00 46.49 2.90
61 62 5.950549 GGCATGGAATTATCATCCTCTGATT 59.049 40.000 0.00 0.00 42.07 2.57
62 63 6.095160 GGCATGGAATTATCATCCTCTGATTC 59.905 42.308 0.00 0.00 42.07 2.52
63 64 6.885376 GCATGGAATTATCATCCTCTGATTCT 59.115 38.462 0.00 0.00 42.07 2.40
64 65 7.066043 GCATGGAATTATCATCCTCTGATTCTC 59.934 40.741 0.00 0.00 42.07 2.87
65 66 7.013823 TGGAATTATCATCCTCTGATTCTCC 57.986 40.000 0.00 0.00 42.07 3.71
66 67 6.559921 TGGAATTATCATCCTCTGATTCTCCA 59.440 38.462 7.79 7.79 42.07 3.86
67 68 7.239143 TGGAATTATCATCCTCTGATTCTCCAT 59.761 37.037 7.79 0.00 42.07 3.41
68 69 7.769970 GGAATTATCATCCTCTGATTCTCCATC 59.230 40.741 0.00 0.00 42.07 3.51
69 70 8.452138 AATTATCATCCTCTGATTCTCCATCT 57.548 34.615 0.00 0.00 42.07 2.90
70 71 5.748670 ATCATCCTCTGATTCTCCATCTG 57.251 43.478 0.00 0.00 42.07 2.90
71 72 4.554683 TCATCCTCTGATTCTCCATCTGT 58.445 43.478 0.00 0.00 33.52 3.41
72 73 4.967442 TCATCCTCTGATTCTCCATCTGTT 59.033 41.667 0.00 0.00 33.52 3.16
73 74 4.750021 TCCTCTGATTCTCCATCTGTTG 57.250 45.455 0.00 0.00 33.52 3.33
74 75 3.118482 TCCTCTGATTCTCCATCTGTTGC 60.118 47.826 0.00 0.00 33.52 4.17
75 76 3.204526 CTCTGATTCTCCATCTGTTGCC 58.795 50.000 0.00 0.00 33.52 4.52
76 77 2.842496 TCTGATTCTCCATCTGTTGCCT 59.158 45.455 0.00 0.00 33.52 4.75
77 78 2.943690 CTGATTCTCCATCTGTTGCCTG 59.056 50.000 0.00 0.00 32.34 4.85
78 79 2.306805 TGATTCTCCATCTGTTGCCTGT 59.693 45.455 0.00 0.00 32.34 4.00
79 80 2.957402 TTCTCCATCTGTTGCCTGTT 57.043 45.000 0.00 0.00 0.00 3.16
80 81 2.479566 TCTCCATCTGTTGCCTGTTC 57.520 50.000 0.00 0.00 0.00 3.18
81 82 1.003580 TCTCCATCTGTTGCCTGTTCC 59.996 52.381 0.00 0.00 0.00 3.62
82 83 1.004044 CTCCATCTGTTGCCTGTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
83 84 1.425066 TCCATCTGTTGCCTGTTCCTT 59.575 47.619 0.00 0.00 0.00 3.36
84 85 2.642311 TCCATCTGTTGCCTGTTCCTTA 59.358 45.455 0.00 0.00 0.00 2.69
85 86 3.012518 CCATCTGTTGCCTGTTCCTTAG 58.987 50.000 0.00 0.00 0.00 2.18
86 87 2.859165 TCTGTTGCCTGTTCCTTAGG 57.141 50.000 0.00 0.00 38.39 2.69
87 88 1.351017 TCTGTTGCCTGTTCCTTAGGG 59.649 52.381 0.00 0.00 35.80 3.53
88 89 0.251165 TGTTGCCTGTTCCTTAGGGC 60.251 55.000 0.00 0.00 44.31 5.19
89 90 0.038310 GTTGCCTGTTCCTTAGGGCT 59.962 55.000 0.00 0.00 44.36 5.19
90 91 1.280998 GTTGCCTGTTCCTTAGGGCTA 59.719 52.381 0.00 0.00 44.36 3.93
91 92 1.893315 TGCCTGTTCCTTAGGGCTAT 58.107 50.000 0.00 0.00 44.36 2.97
92 93 1.768870 TGCCTGTTCCTTAGGGCTATC 59.231 52.381 0.00 0.00 44.36 2.08
93 94 2.050918 GCCTGTTCCTTAGGGCTATCT 58.949 52.381 0.00 0.00 41.20 1.98
94 95 2.439880 GCCTGTTCCTTAGGGCTATCTT 59.560 50.000 0.00 0.00 41.20 2.40
95 96 3.745797 GCCTGTTCCTTAGGGCTATCTTG 60.746 52.174 0.00 0.00 41.20 3.02
96 97 3.471680 CTGTTCCTTAGGGCTATCTTGC 58.528 50.000 0.00 0.00 0.00 4.01
105 106 2.947127 GGCTATCTTGCCCATCTTCT 57.053 50.000 0.00 0.00 46.82 2.85
106 107 3.220674 GGCTATCTTGCCCATCTTCTT 57.779 47.619 0.00 0.00 46.82 2.52
107 108 2.883386 GGCTATCTTGCCCATCTTCTTG 59.117 50.000 0.00 0.00 46.82 3.02
108 109 2.292845 GCTATCTTGCCCATCTTCTTGC 59.707 50.000 0.00 0.00 0.00 4.01
109 110 2.822707 ATCTTGCCCATCTTCTTGCT 57.177 45.000 0.00 0.00 0.00 3.91
110 111 2.119801 TCTTGCCCATCTTCTTGCTC 57.880 50.000 0.00 0.00 0.00 4.26
111 112 0.731417 CTTGCCCATCTTCTTGCTCG 59.269 55.000 0.00 0.00 0.00 5.03
112 113 0.677731 TTGCCCATCTTCTTGCTCGG 60.678 55.000 0.00 0.00 0.00 4.63
113 114 2.476320 GCCCATCTTCTTGCTCGGC 61.476 63.158 0.00 0.00 0.00 5.54
114 115 1.821332 CCCATCTTCTTGCTCGGCC 60.821 63.158 0.00 0.00 0.00 6.13
115 116 1.222936 CCATCTTCTTGCTCGGCCT 59.777 57.895 0.00 0.00 0.00 5.19
116 117 1.094073 CCATCTTCTTGCTCGGCCTG 61.094 60.000 0.00 0.00 0.00 4.85
117 118 1.451028 ATCTTCTTGCTCGGCCTGC 60.451 57.895 0.00 5.84 0.00 4.85
118 119 1.908340 ATCTTCTTGCTCGGCCTGCT 61.908 55.000 16.66 0.00 0.00 4.24
119 120 2.046892 TTCTTGCTCGGCCTGCTC 60.047 61.111 16.66 0.00 0.00 4.26
120 121 2.793160 CTTCTTGCTCGGCCTGCTCA 62.793 60.000 16.66 4.98 0.00 4.26
121 122 3.123620 CTTGCTCGGCCTGCTCAC 61.124 66.667 16.66 0.00 0.00 3.51
166 167 4.280019 GGTCAAACCCACGGGCCT 62.280 66.667 0.84 0.00 39.32 5.19
171 172 0.106719 CAAACCCACGGGCCTATCAT 60.107 55.000 0.84 0.00 39.32 2.45
174 175 2.146724 CCCACGGGCCTATCATGGA 61.147 63.158 0.84 0.00 31.69 3.41
180 181 0.687354 GGGCCTATCATGGATGACGT 59.313 55.000 0.84 0.00 40.03 4.34
212 213 3.057596 CGCCAAAAAGATCTTAGGCAACA 60.058 43.478 30.14 0.00 42.10 3.33
214 215 4.619160 GCCAAAAAGATCTTAGGCAACAGG 60.619 45.833 28.11 15.56 41.63 4.00
219 220 2.912956 AGATCTTAGGCAACAGGTTGGA 59.087 45.455 13.52 2.96 40.74 3.53
244 245 4.600692 TCATAGGTGACATTATGGGTCG 57.399 45.455 0.00 0.00 38.10 4.79
245 246 4.219919 TCATAGGTGACATTATGGGTCGA 58.780 43.478 0.00 0.00 38.10 4.20
246 247 4.838423 TCATAGGTGACATTATGGGTCGAT 59.162 41.667 0.00 0.00 38.10 3.59
248 249 6.495526 TCATAGGTGACATTATGGGTCGATAA 59.504 38.462 0.00 0.00 38.10 1.75
251 252 3.739300 GTGACATTATGGGTCGATAACGG 59.261 47.826 0.00 0.00 38.10 4.44
255 256 4.812626 ACATTATGGGTCGATAACGGAAAC 59.187 41.667 0.00 0.00 40.21 2.78
280 281 4.321675 GCCACCGATGACATTTTTAGGTTT 60.322 41.667 0.00 0.00 0.00 3.27
281 282 5.399013 CCACCGATGACATTTTTAGGTTTC 58.601 41.667 0.00 0.00 0.00 2.78
282 283 5.048364 CCACCGATGACATTTTTAGGTTTCA 60.048 40.000 0.00 0.00 0.00 2.69
308 309 1.992667 TGAAATGCGATCTCGTGTGAC 59.007 47.619 1.14 0.00 42.22 3.67
360 361 6.662414 TTTCTATGATGATGTTTCGGTGAC 57.338 37.500 0.00 0.00 0.00 3.67
373 374 1.153329 GGTGACGGTGTGGTTGACA 60.153 57.895 0.00 0.00 0.00 3.58
385 386 1.021968 GGTTGACAGCCAGAAAACGT 58.978 50.000 3.02 0.00 0.00 3.99
411 413 5.174216 GCCAACGTATTTTTGTGACGAAAAT 59.826 36.000 22.83 22.83 39.81 1.82
424 426 5.180271 GTGACGAAAATGGGTTATACAGGA 58.820 41.667 0.00 0.00 0.00 3.86
433 435 3.008594 TGGGTTATACAGGACACAAGTGG 59.991 47.826 5.08 0.00 34.19 4.00
434 436 3.606687 GGTTATACAGGACACAAGTGGG 58.393 50.000 5.08 0.00 34.19 4.61
448 452 2.172851 AGTGGGACGTCGCAAAATAA 57.827 45.000 33.39 10.30 40.56 1.40
480 484 3.758023 TGTAGTGGATGAACATGCAAAGG 59.242 43.478 10.27 0.00 40.81 3.11
491 495 1.870055 ATGCAAAGGAGTGGCTTGCG 61.870 55.000 0.00 0.00 46.70 4.85
502 506 0.396435 TGGCTTGCGGAGAAGAAGAA 59.604 50.000 0.00 0.00 0.00 2.52
503 507 1.082690 GGCTTGCGGAGAAGAAGAAG 58.917 55.000 0.00 0.00 0.00 2.85
513 517 3.264450 GGAGAAGAAGAAGGGGATCAACA 59.736 47.826 0.00 0.00 0.00 3.33
566 570 2.044555 GGCAGCAGCTGAGAATGCA 61.045 57.895 27.39 0.00 45.01 3.96
593 642 6.698008 ATGATGCTTTTCATGTTCGGATTA 57.302 33.333 0.00 0.00 35.05 1.75
596 645 8.219546 TGATGCTTTTCATGTTCGGATTATTA 57.780 30.769 0.00 0.00 35.05 0.98
646 695 7.944120 CGTATTTGTTTCGAATTGTTGAATTGG 59.056 33.333 0.00 0.00 31.58 3.16
659 708 8.687824 ATTGTTGAATTGGAACGATTTGTATC 57.312 30.769 0.00 0.00 0.00 2.24
660 709 7.208225 TGTTGAATTGGAACGATTTGTATCA 57.792 32.000 0.00 0.00 0.00 2.15
675 724 7.883229 ATTTGTATCATATAATCGACGTGCA 57.117 32.000 0.00 0.00 0.00 4.57
699 748 6.541934 TGGATTGCATGGATTTAATGTTCA 57.458 33.333 0.00 0.00 0.00 3.18
706 755 9.716531 TTGCATGGATTTAATGTTCAACATTTA 57.283 25.926 20.74 9.47 45.80 1.40
731 780 1.136961 TGTGGATGTACCCAGCCCAA 61.137 55.000 0.00 0.00 46.95 4.12
733 782 0.780637 TGGATGTACCCAGCCCAAAA 59.219 50.000 0.00 0.00 46.95 2.44
734 783 1.360852 TGGATGTACCCAGCCCAAAAT 59.639 47.619 0.00 0.00 46.95 1.82
735 784 1.756538 GGATGTACCCAGCCCAAAATG 59.243 52.381 0.00 0.00 41.46 2.32
736 785 2.622977 GGATGTACCCAGCCCAAAATGA 60.623 50.000 0.00 0.00 41.46 2.57
740 789 1.686800 CCCAGCCCAAAATGAGGGG 60.687 63.158 0.00 0.00 46.86 4.79
746 795 1.604147 CCCAAAATGAGGGGCCGTTC 61.604 60.000 0.00 0.00 42.90 3.95
747 796 1.506262 CAAAATGAGGGGCCGTTCG 59.494 57.895 0.00 0.00 0.00 3.95
748 797 1.677633 AAAATGAGGGGCCGTTCGG 60.678 57.895 6.90 6.90 0.00 4.30
749 798 2.420466 AAAATGAGGGGCCGTTCGGT 62.420 55.000 12.81 0.00 0.00 4.69
758 807 2.954753 GCCGTTCGGTGCTGTTCAG 61.955 63.158 12.81 0.00 0.00 3.02
760 809 2.317609 CGTTCGGTGCTGTTCAGGG 61.318 63.158 1.97 0.00 0.00 4.45
762 811 0.321653 GTTCGGTGCTGTTCAGGGAT 60.322 55.000 1.97 0.00 0.00 3.85
784 833 1.838073 GCCCACGGGAGTATATGGGG 61.838 65.000 6.21 0.00 44.67 4.96
785 834 0.473117 CCCACGGGAGTATATGGGGT 60.473 60.000 0.00 0.00 44.67 4.95
788 837 2.043992 CACGGGAGTATATGGGGTGAA 58.956 52.381 0.00 0.00 44.67 3.18
791 840 3.720002 ACGGGAGTATATGGGGTGAATTT 59.280 43.478 0.00 0.00 44.60 1.82
792 841 4.072131 CGGGAGTATATGGGGTGAATTTG 58.928 47.826 0.00 0.00 0.00 2.32
794 843 4.447762 GGGAGTATATGGGGTGAATTTGCT 60.448 45.833 0.00 0.00 0.00 3.91
795 844 4.520492 GGAGTATATGGGGTGAATTTGCTG 59.480 45.833 0.00 0.00 0.00 4.41
796 845 5.129368 AGTATATGGGGTGAATTTGCTGT 57.871 39.130 0.00 0.00 0.00 4.40
813 872 8.915057 ATTTGCTGTAGATGCTCTAATTACAT 57.085 30.769 0.00 0.00 29.58 2.29
822 881 7.971201 AGATGCTCTAATTACATGATGGAAGA 58.029 34.615 0.00 0.00 0.00 2.87
864 2516 7.816995 AGATTTAGCAAAACCGCAATTCATTAA 59.183 29.630 0.00 0.00 0.00 1.40
953 2605 0.380378 CAGAAAACCACACCACCACG 59.620 55.000 0.00 0.00 0.00 4.94
954 2606 0.750182 AGAAAACCACACCACCACGG 60.750 55.000 0.00 0.00 42.50 4.94
956 2608 3.646942 AAACCACACCACCACGGCA 62.647 57.895 0.00 0.00 39.03 5.69
959 2611 4.866224 CACACCACCACGGCACCA 62.866 66.667 0.00 0.00 39.03 4.17
960 2612 4.868116 ACACCACCACGGCACCAC 62.868 66.667 0.00 0.00 39.03 4.16
961 2613 4.562425 CACCACCACGGCACCACT 62.562 66.667 0.00 0.00 39.03 4.00
962 2614 3.804329 ACCACCACGGCACCACTT 61.804 61.111 0.00 0.00 39.03 3.16
963 2615 2.518349 CCACCACGGCACCACTTT 60.518 61.111 0.00 0.00 0.00 2.66
964 2616 2.551912 CCACCACGGCACCACTTTC 61.552 63.158 0.00 0.00 0.00 2.62
965 2617 2.203294 ACCACGGCACCACTTTCC 60.203 61.111 0.00 0.00 0.00 3.13
1230 2882 1.223337 CCCTCCATACCCTACCTCCTT 59.777 57.143 0.00 0.00 0.00 3.36
1371 3023 1.913762 CCACTGGACCCTCCTCGTT 60.914 63.158 0.00 0.00 37.46 3.85
1647 3299 1.338200 GGAGCAGATTGGTTCGACACT 60.338 52.381 0.00 0.00 0.00 3.55
1697 3349 4.802051 GGCAATGAGGGCCGAGCA 62.802 66.667 0.00 0.00 42.39 4.26
1831 3483 0.954452 GCAGCTTGCCTTAGTGTTGT 59.046 50.000 0.00 0.00 37.42 3.32
1838 3490 2.833794 TGCCTTAGTGTTGTCTGTCAC 58.166 47.619 0.00 0.00 35.13 3.67
1844 3496 5.521010 CCTTAGTGTTGTCTGTCACGTTTTA 59.479 40.000 0.00 0.00 39.25 1.52
1877 3529 5.418310 TTTGTAGTGTGCTTCAAAGTAGC 57.582 39.130 0.00 0.00 37.17 3.58
1915 3567 6.846325 ACAGAGCTTGTGTAAGTAAAGTTC 57.154 37.500 0.94 0.00 38.99 3.01
1998 3650 5.514059 TTTAACCGTGCTTATGTTCGTAC 57.486 39.130 0.00 0.00 0.00 3.67
2158 3810 7.553044 ACAAGTTCTTTTACTACTGCTCTTTGT 59.447 33.333 0.00 0.00 0.00 2.83
2175 3827 9.102757 TGCTCTTTGTTAAAATGTTGCAATAAA 57.897 25.926 0.59 0.00 0.00 1.40
2313 3965 7.074502 CAGAAAGAACAAAGCTATGACAGTTC 58.925 38.462 0.00 0.00 36.52 3.01
2319 3971 6.639632 ACAAAGCTATGACAGTTCAATGTT 57.360 33.333 0.00 0.00 34.61 2.71
2354 4006 7.656137 TCTTCAGTTGTAGTGTATGTTTCTTCC 59.344 37.037 0.00 0.00 0.00 3.46
2504 4201 7.755582 AACATGTTTCTTTGTACTTTTCTGC 57.244 32.000 4.92 0.00 0.00 4.26
2580 4277 7.936847 AGGTGAAGTGATGATAAACAAACACTA 59.063 33.333 0.00 0.00 43.38 2.74
2589 4286 7.899178 TGATAAACAAACACTATGATGTCGT 57.101 32.000 0.00 0.00 30.55 4.34
2594 4291 8.547967 AAACAAACACTATGATGTCGTATTCT 57.452 30.769 0.00 0.00 30.55 2.40
2603 4300 8.197439 ACTATGATGTCGTATTCTGTCATTTCA 58.803 33.333 0.00 0.00 0.00 2.69
2656 4353 7.174772 TGAGATTGTTTGCTGCAAAGTATTCTA 59.825 33.333 26.63 12.54 33.82 2.10
2707 4404 7.147461 TGGTACAATGAATACAATGGGCTACTA 60.147 37.037 0.00 0.00 31.92 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.081641 GAGCCTTGACGACGACGAA 60.082 57.895 15.32 0.00 42.66 3.85
1 2 2.255881 TGAGCCTTGACGACGACGA 61.256 57.895 15.32 0.00 42.66 4.20
2 3 2.081212 GTGAGCCTTGACGACGACG 61.081 63.158 5.58 5.58 45.75 5.12
3 4 0.318784 AAGTGAGCCTTGACGACGAC 60.319 55.000 0.00 0.00 30.18 4.34
4 5 0.039437 GAAGTGAGCCTTGACGACGA 60.039 55.000 0.00 0.00 32.03 4.20
5 6 1.337817 CGAAGTGAGCCTTGACGACG 61.338 60.000 0.00 0.00 32.03 5.12
6 7 0.318784 ACGAAGTGAGCCTTGACGAC 60.319 55.000 0.00 0.00 42.51 4.34
7 8 2.038690 ACGAAGTGAGCCTTGACGA 58.961 52.632 0.00 0.00 42.51 4.20
8 9 4.655527 ACGAAGTGAGCCTTGACG 57.344 55.556 0.00 0.00 42.51 4.35
20 21 1.273606 TGCCTCTCTCCAAAGACGAAG 59.726 52.381 0.00 0.00 0.00 3.79
21 22 1.338107 TGCCTCTCTCCAAAGACGAA 58.662 50.000 0.00 0.00 0.00 3.85
22 23 1.205655 CATGCCTCTCTCCAAAGACGA 59.794 52.381 0.00 0.00 0.00 4.20
23 24 1.649664 CATGCCTCTCTCCAAAGACG 58.350 55.000 0.00 0.00 0.00 4.18
24 25 1.556911 TCCATGCCTCTCTCCAAAGAC 59.443 52.381 0.00 0.00 0.00 3.01
25 26 1.956869 TCCATGCCTCTCTCCAAAGA 58.043 50.000 0.00 0.00 0.00 2.52
26 27 2.795231 TTCCATGCCTCTCTCCAAAG 57.205 50.000 0.00 0.00 0.00 2.77
27 28 3.744940 AATTCCATGCCTCTCTCCAAA 57.255 42.857 0.00 0.00 0.00 3.28
28 29 4.413189 TGATAATTCCATGCCTCTCTCCAA 59.587 41.667 0.00 0.00 0.00 3.53
29 30 3.975982 TGATAATTCCATGCCTCTCTCCA 59.024 43.478 0.00 0.00 0.00 3.86
30 31 4.630644 TGATAATTCCATGCCTCTCTCC 57.369 45.455 0.00 0.00 0.00 3.71
31 32 5.045724 AGGATGATAATTCCATGCCTCTCTC 60.046 44.000 8.10 0.00 35.59 3.20
32 33 4.850963 AGGATGATAATTCCATGCCTCTCT 59.149 41.667 8.10 0.00 35.59 3.10
33 34 5.045724 AGAGGATGATAATTCCATGCCTCTC 60.046 44.000 20.65 10.65 40.49 3.20
34 35 4.850963 AGAGGATGATAATTCCATGCCTCT 59.149 41.667 20.65 20.65 40.15 3.69
35 36 4.942483 CAGAGGATGATAATTCCATGCCTC 59.058 45.833 18.59 18.59 37.91 4.70
36 37 4.600547 TCAGAGGATGATAATTCCATGCCT 59.399 41.667 8.10 8.83 35.59 4.75
37 38 4.914983 TCAGAGGATGATAATTCCATGCC 58.085 43.478 8.10 5.47 35.59 4.40
49 50 4.554683 ACAGATGGAGAATCAGAGGATGA 58.445 43.478 0.00 0.00 43.70 2.92
50 51 4.959560 ACAGATGGAGAATCAGAGGATG 57.040 45.455 0.00 0.00 37.81 3.51
51 52 4.444591 GCAACAGATGGAGAATCAGAGGAT 60.445 45.833 0.00 0.00 37.81 3.24
52 53 3.118482 GCAACAGATGGAGAATCAGAGGA 60.118 47.826 0.00 0.00 37.81 3.71
53 54 3.204526 GCAACAGATGGAGAATCAGAGG 58.795 50.000 0.00 0.00 37.81 3.69
54 55 3.118334 AGGCAACAGATGGAGAATCAGAG 60.118 47.826 0.00 0.00 37.81 3.35
55 56 2.842496 AGGCAACAGATGGAGAATCAGA 59.158 45.455 0.00 0.00 37.81 3.27
56 57 2.943690 CAGGCAACAGATGGAGAATCAG 59.056 50.000 0.00 0.00 37.81 2.90
57 58 2.306805 ACAGGCAACAGATGGAGAATCA 59.693 45.455 0.00 0.00 37.81 2.57
58 59 2.996631 ACAGGCAACAGATGGAGAATC 58.003 47.619 0.00 0.00 41.41 2.52
59 60 3.350833 GAACAGGCAACAGATGGAGAAT 58.649 45.455 0.00 0.00 41.41 2.40
60 61 2.553028 GGAACAGGCAACAGATGGAGAA 60.553 50.000 0.00 0.00 41.41 2.87
61 62 1.003580 GGAACAGGCAACAGATGGAGA 59.996 52.381 0.00 0.00 41.41 3.71
62 63 1.004044 AGGAACAGGCAACAGATGGAG 59.996 52.381 0.00 0.00 41.41 3.86
63 64 1.067295 AGGAACAGGCAACAGATGGA 58.933 50.000 0.00 0.00 41.41 3.41
64 65 1.915141 AAGGAACAGGCAACAGATGG 58.085 50.000 0.00 0.00 41.41 3.51
65 66 3.012518 CCTAAGGAACAGGCAACAGATG 58.987 50.000 0.00 0.00 41.41 2.90
66 67 2.025887 CCCTAAGGAACAGGCAACAGAT 60.026 50.000 0.00 0.00 34.27 2.90
67 68 1.351017 CCCTAAGGAACAGGCAACAGA 59.649 52.381 0.00 0.00 34.27 3.41
68 69 1.826385 CCCTAAGGAACAGGCAACAG 58.174 55.000 0.00 0.00 34.27 3.16
69 70 0.251165 GCCCTAAGGAACAGGCAACA 60.251 55.000 0.00 0.00 45.07 3.33
70 71 2.568003 GCCCTAAGGAACAGGCAAC 58.432 57.895 0.00 0.00 45.07 4.17
73 74 2.050918 AGATAGCCCTAAGGAACAGGC 58.949 52.381 0.00 0.00 46.13 4.85
74 75 3.745797 GCAAGATAGCCCTAAGGAACAGG 60.746 52.174 0.00 0.00 33.47 4.00
75 76 3.471680 GCAAGATAGCCCTAAGGAACAG 58.528 50.000 0.00 0.00 33.47 3.16
76 77 3.560636 GCAAGATAGCCCTAAGGAACA 57.439 47.619 0.00 0.00 33.47 3.18
87 88 2.292845 GCAAGAAGATGGGCAAGATAGC 59.707 50.000 0.00 0.00 0.00 2.97
88 89 3.814283 GAGCAAGAAGATGGGCAAGATAG 59.186 47.826 0.00 0.00 0.00 2.08
89 90 3.742327 CGAGCAAGAAGATGGGCAAGATA 60.742 47.826 0.00 0.00 0.00 1.98
90 91 2.652590 GAGCAAGAAGATGGGCAAGAT 58.347 47.619 0.00 0.00 0.00 2.40
91 92 1.676916 CGAGCAAGAAGATGGGCAAGA 60.677 52.381 0.00 0.00 0.00 3.02
92 93 0.731417 CGAGCAAGAAGATGGGCAAG 59.269 55.000 0.00 0.00 0.00 4.01
93 94 0.677731 CCGAGCAAGAAGATGGGCAA 60.678 55.000 0.00 0.00 0.00 4.52
94 95 1.078214 CCGAGCAAGAAGATGGGCA 60.078 57.895 0.00 0.00 0.00 5.36
95 96 3.819188 CCGAGCAAGAAGATGGGC 58.181 61.111 0.00 0.00 0.00 5.36
96 97 1.821332 GGCCGAGCAAGAAGATGGG 60.821 63.158 0.00 0.00 34.24 4.00
97 98 1.094073 CAGGCCGAGCAAGAAGATGG 61.094 60.000 0.00 0.00 0.00 3.51
98 99 1.712977 GCAGGCCGAGCAAGAAGATG 61.713 60.000 16.97 0.00 0.00 2.90
99 100 1.451028 GCAGGCCGAGCAAGAAGAT 60.451 57.895 16.97 0.00 0.00 2.40
100 101 2.046892 GCAGGCCGAGCAAGAAGA 60.047 61.111 16.97 0.00 0.00 2.87
101 102 2.046507 AGCAGGCCGAGCAAGAAG 60.047 61.111 22.53 0.00 0.00 2.85
102 103 2.046892 GAGCAGGCCGAGCAAGAA 60.047 61.111 22.53 0.00 0.00 2.52
103 104 3.313524 TGAGCAGGCCGAGCAAGA 61.314 61.111 22.53 5.57 0.00 3.02
104 105 3.123620 GTGAGCAGGCCGAGCAAG 61.124 66.667 22.53 0.56 0.00 4.01
117 118 2.119484 TAACAGTTGGGGCCCGTGAG 62.119 60.000 22.40 13.60 0.00 3.51
118 119 2.119484 CTAACAGTTGGGGCCCGTGA 62.119 60.000 22.40 7.63 0.00 4.35
119 120 1.674322 CTAACAGTTGGGGCCCGTG 60.674 63.158 19.83 17.49 0.00 4.94
120 121 0.837260 TACTAACAGTTGGGGCCCGT 60.837 55.000 19.83 6.54 0.00 5.28
121 122 0.544697 ATACTAACAGTTGGGGCCCG 59.455 55.000 19.83 5.76 0.00 6.13
122 123 1.844497 AGATACTAACAGTTGGGGCCC 59.156 52.381 18.17 18.17 0.00 5.80
158 159 0.686789 TCATCCATGATAGGCCCGTG 59.313 55.000 0.00 0.00 0.00 4.94
166 167 6.586082 CGACAATATTCACGTCATCCATGATA 59.414 38.462 0.00 0.00 39.30 2.15
171 172 2.863740 GCGACAATATTCACGTCATCCA 59.136 45.455 10.89 0.00 0.00 3.41
174 175 2.899976 TGGCGACAATATTCACGTCAT 58.100 42.857 12.10 0.00 35.54 3.06
187 188 2.747446 GCCTAAGATCTTTTTGGCGACA 59.253 45.455 22.26 0.00 39.83 4.35
212 213 4.620723 TGTCACCTATGATAGTCCAACCT 58.379 43.478 0.00 0.00 37.14 3.50
214 215 7.604164 CCATAATGTCACCTATGATAGTCCAAC 59.396 40.741 0.00 0.00 37.14 3.77
219 220 6.071334 CGACCCATAATGTCACCTATGATAGT 60.071 42.308 0.00 1.80 37.14 2.12
244 245 1.698714 CGGTGGCCGTTTCCGTTATC 61.699 60.000 16.58 0.00 42.73 1.75
245 246 1.742510 CGGTGGCCGTTTCCGTTAT 60.743 57.895 16.58 0.00 42.73 1.89
246 247 2.357275 CGGTGGCCGTTTCCGTTA 60.357 61.111 16.58 0.00 42.73 3.18
285 286 0.302890 CACGAGATCGCATTTCAGGC 59.697 55.000 1.39 0.00 44.43 4.85
332 333 9.655769 CACCGAAACATCATCATAGAAAATAAG 57.344 33.333 0.00 0.00 0.00 1.73
346 347 0.105224 ACACCGTCACCGAAACATCA 59.895 50.000 0.00 0.00 35.63 3.07
349 350 1.521906 CCACACCGTCACCGAAACA 60.522 57.895 0.00 0.00 35.63 2.83
355 356 1.153329 TGTCAACCACACCGTCACC 60.153 57.895 0.00 0.00 0.00 4.02
360 361 2.203139 TGGCTGTCAACCACACCG 60.203 61.111 0.00 0.00 31.95 4.94
365 366 1.021202 CGTTTTCTGGCTGTCAACCA 58.979 50.000 0.00 0.00 35.40 3.67
368 369 0.934496 CGACGTTTTCTGGCTGTCAA 59.066 50.000 0.00 0.00 0.00 3.18
373 374 1.525077 TTGGCGACGTTTTCTGGCT 60.525 52.632 0.00 0.00 0.00 4.75
385 386 2.348685 CGTCACAAAAATACGTTGGCGA 60.349 45.455 2.17 0.00 42.00 5.54
400 401 4.938832 CCTGTATAACCCATTTTCGTCACA 59.061 41.667 0.00 0.00 0.00 3.58
401 402 5.064325 GTCCTGTATAACCCATTTTCGTCAC 59.936 44.000 0.00 0.00 0.00 3.67
411 413 3.008594 CCACTTGTGTCCTGTATAACCCA 59.991 47.826 0.00 0.00 0.00 4.51
424 426 2.279918 GCGACGTCCCACTTGTGT 60.280 61.111 10.58 0.00 0.00 3.72
433 435 2.604969 TGCTTTATTTTGCGACGTCC 57.395 45.000 10.58 3.43 0.00 4.79
434 436 5.494863 AATTTGCTTTATTTTGCGACGTC 57.505 34.783 5.18 5.18 0.00 4.34
448 452 6.815089 TGTTCATCCACTACAAAATTTGCTT 58.185 32.000 5.52 0.00 0.00 3.91
480 484 0.320771 TTCTTCTCCGCAAGCCACTC 60.321 55.000 0.00 0.00 0.00 3.51
491 495 3.264450 TGTTGATCCCCTTCTTCTTCTCC 59.736 47.826 0.00 0.00 0.00 3.71
502 506 0.909623 CCTACGGTTGTTGATCCCCT 59.090 55.000 0.00 0.00 0.00 4.79
503 507 0.107361 CCCTACGGTTGTTGATCCCC 60.107 60.000 0.00 0.00 0.00 4.81
546 550 1.592400 GCATTCTCAGCTGCTGCCAA 61.592 55.000 24.38 18.10 40.80 4.52
557 561 2.863401 GCATCATTGCTGCATTCTCA 57.137 45.000 1.84 0.00 45.77 3.27
596 645 7.920682 ACGAGAAAGCAAAACAAATCATAGTTT 59.079 29.630 0.00 0.00 39.46 2.66
646 695 8.847567 ACGTCGATTATATGATACAAATCGTTC 58.152 33.333 21.29 16.71 46.58 3.95
659 708 5.553721 CAATCCATGCACGTCGATTATATG 58.446 41.667 0.00 0.00 0.00 1.78
660 709 5.784750 CAATCCATGCACGTCGATTATAT 57.215 39.130 0.00 0.00 0.00 0.86
675 724 7.127012 TGAACATTAAATCCATGCAATCCAT 57.873 32.000 0.00 0.00 33.39 3.41
694 743 9.241919 ACATCCACATATCTTAAATGTTGAACA 57.758 29.630 0.00 0.00 35.39 3.18
699 748 8.278639 TGGGTACATCCACATATCTTAAATGTT 58.721 33.333 0.00 0.00 35.39 2.71
706 755 3.073062 GGCTGGGTACATCCACATATCTT 59.927 47.826 0.00 0.00 38.11 2.40
709 758 1.705186 GGGCTGGGTACATCCACATAT 59.295 52.381 0.00 0.00 34.53 1.78
731 780 2.045340 CCGAACGGCCCCTCATTT 60.045 61.111 0.00 0.00 0.00 2.32
733 782 4.096003 CACCGAACGGCCCCTCAT 62.096 66.667 13.32 0.00 39.32 2.90
740 789 2.954753 CTGAACAGCACCGAACGGC 61.955 63.158 13.32 0.30 39.32 5.68
742 791 2.317609 CCCTGAACAGCACCGAACG 61.318 63.158 0.00 0.00 0.00 3.95
743 792 0.321653 ATCCCTGAACAGCACCGAAC 60.322 55.000 0.00 0.00 0.00 3.95
746 795 2.401766 GCATCCCTGAACAGCACCG 61.402 63.158 0.00 0.00 0.00 4.94
747 796 2.401766 CGCATCCCTGAACAGCACC 61.402 63.158 0.00 0.00 0.00 5.01
748 797 3.044059 GCGCATCCCTGAACAGCAC 62.044 63.158 0.30 0.00 0.00 4.40
749 798 2.747460 GCGCATCCCTGAACAGCA 60.747 61.111 0.30 0.00 0.00 4.41
760 809 1.812686 TATACTCCCGTGGGCGCATC 61.813 60.000 10.83 0.40 36.67 3.91
762 811 1.835267 ATATACTCCCGTGGGCGCA 60.835 57.895 10.83 0.00 36.67 6.09
813 872 7.174413 TCAGGTGTATGAAATTTCTTCCATCA 58.826 34.615 18.64 7.95 0.00 3.07
822 881 8.579850 TGCTAAATCTCAGGTGTATGAAATTT 57.420 30.769 0.00 0.00 34.88 1.82
830 889 4.693566 CGGTTTTGCTAAATCTCAGGTGTA 59.306 41.667 2.48 0.00 0.00 2.90
864 2516 5.939883 GGGTGTAGTTTTAATACGGGAAAGT 59.060 40.000 0.00 0.00 0.00 2.66
902 2554 0.107508 CAAGTGTCCCGATCTGCCAT 60.108 55.000 0.00 0.00 0.00 4.40
953 2605 0.536460 TTCTTCCGGAAAGTGGTGCC 60.536 55.000 19.39 0.00 36.31 5.01
954 2606 0.875059 CTTCTTCCGGAAAGTGGTGC 59.125 55.000 19.39 0.00 36.31 5.01
956 2608 2.810767 GCTTCTTCTTCCGGAAAGTGGT 60.811 50.000 19.39 0.00 36.31 4.16
958 2610 2.494059 TGCTTCTTCTTCCGGAAAGTG 58.506 47.619 19.39 6.99 36.31 3.16
959 2611 2.930826 TGCTTCTTCTTCCGGAAAGT 57.069 45.000 19.39 0.00 36.31 2.66
960 2612 3.604582 AGATGCTTCTTCTTCCGGAAAG 58.395 45.455 19.39 13.88 36.22 2.62
961 2613 3.600388 GAGATGCTTCTTCTTCCGGAAA 58.400 45.455 19.39 3.01 33.07 3.13
962 2614 2.093447 GGAGATGCTTCTTCTTCCGGAA 60.093 50.000 17.73 17.73 30.30 4.30
963 2615 1.482593 GGAGATGCTTCTTCTTCCGGA 59.517 52.381 0.00 0.00 30.30 5.14
964 2616 1.484240 AGGAGATGCTTCTTCTTCCGG 59.516 52.381 4.55 0.00 33.71 5.14
965 2617 2.167281 TGAGGAGATGCTTCTTCTTCCG 59.833 50.000 11.56 0.00 37.99 4.30
1230 2882 2.420568 CGGGTCCGGGAGATTCGAA 61.421 63.158 0.00 0.00 35.56 3.71
1341 2993 4.785453 CAGTGGGAGCCGCCTTCC 62.785 72.222 0.00 0.00 37.24 3.46
1371 3023 2.355363 CCGTTTGTGGCGTCGAGA 60.355 61.111 0.00 0.00 0.00 4.04
1647 3299 1.185618 CGTCCACCTCCTTCCTCACA 61.186 60.000 0.00 0.00 0.00 3.58
1697 3349 2.186384 GAGCGATCAGGTGCAGCT 59.814 61.111 13.85 13.85 41.29 4.24
1844 3496 6.072112 AGCACACTACAAAATCAATCGTTT 57.928 33.333 0.00 0.00 0.00 3.60
1857 3509 4.058124 CTGCTACTTTGAAGCACACTACA 58.942 43.478 0.00 0.00 44.78 2.74
1877 3529 4.677584 AGCTCTGTTCTACGCTATTTCTG 58.322 43.478 0.00 0.00 0.00 3.02
1915 3567 2.189594 TGGCTGTGAAACTCATCCAG 57.810 50.000 0.00 0.00 38.04 3.86
1998 3650 5.221244 TGTGATCCACTATACTTCATCACCG 60.221 44.000 7.26 0.00 39.50 4.94
2354 4006 1.808411 ATTAGACTGCCACACCAACG 58.192 50.000 0.00 0.00 0.00 4.10
2551 4248 7.041167 TGTTTGTTTATCATCACTTCACCTCAG 60.041 37.037 0.00 0.00 0.00 3.35
2565 4262 7.899178 ACGACATCATAGTGTTTGTTTATCA 57.101 32.000 0.00 0.00 31.16 2.15
2580 4277 7.044181 ACTGAAATGACAGAATACGACATCAT 58.956 34.615 0.00 0.00 40.63 2.45
2589 4286 8.675705 TCAAACAGAACTGAAATGACAGAATA 57.324 30.769 8.87 0.00 40.63 1.75
2594 4291 6.096705 ACCAATCAAACAGAACTGAAATGACA 59.903 34.615 8.87 0.00 0.00 3.58
2603 4300 8.859090 TCATTCAAATACCAATCAAACAGAACT 58.141 29.630 0.00 0.00 0.00 3.01
2707 4404 2.158534 TGTAAGGGAAACTGCACACCAT 60.159 45.455 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.