Multiple sequence alignment - TraesCS5B01G153900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G153900 chr5B 100.000 6339 0 0 1 6339 283232889 283239227 0.000000e+00 11707.0
1 TraesCS5B01G153900 chr5D 94.717 4278 132 33 990 5224 250415150 250419376 0.000000e+00 6562.0
2 TraesCS5B01G153900 chr5D 87.392 1039 87 18 1 1002 250414096 250415127 0.000000e+00 1153.0
3 TraesCS5B01G153900 chr5D 93.113 755 43 7 5590 6339 481281234 481281984 0.000000e+00 1098.0
4 TraesCS5B01G153900 chr5D 93.151 73 4 1 5221 5292 250419456 250419528 8.690000e-19 106.0
5 TraesCS5B01G153900 chr5A 94.123 4305 176 30 988 5230 333738584 333742873 0.000000e+00 6477.0
6 TraesCS5B01G153900 chr5A 86.445 391 31 9 275 643 333737835 333738225 5.920000e-110 409.0
7 TraesCS5B01G153900 chr5A 87.755 294 31 3 1 289 333737526 333737819 7.870000e-89 339.0
8 TraesCS5B01G153900 chr5A 84.470 264 26 9 680 940 333738223 333738474 4.910000e-61 246.0
9 TraesCS5B01G153900 chr5A 92.000 75 6 0 5221 5295 333742946 333743020 8.690000e-19 106.0
10 TraesCS5B01G153900 chr2B 85.871 1642 179 30 2178 3770 210669441 210667804 0.000000e+00 1698.0
11 TraesCS5B01G153900 chr2B 89.594 1009 87 13 5309 6310 500840689 500839692 0.000000e+00 1266.0
12 TraesCS5B01G153900 chr2A 89.145 1345 141 5 2421 3761 148851264 148852607 0.000000e+00 1670.0
13 TraesCS5B01G153900 chr2D 88.618 1353 150 4 2421 3770 152664377 152663026 0.000000e+00 1642.0
14 TraesCS5B01G153900 chr2D 93.510 755 41 6 5590 6339 151986472 151987223 0.000000e+00 1116.0
15 TraesCS5B01G153900 chr2D 93.493 753 44 3 5590 6339 165537946 165538696 0.000000e+00 1114.0
16 TraesCS5B01G153900 chr2D 93.493 753 40 5 5590 6339 103069803 103069057 0.000000e+00 1110.0
17 TraesCS5B01G153900 chr2D 83.865 533 74 11 5303 5831 642128407 642128931 1.230000e-136 497.0
18 TraesCS5B01G153900 chrUn 93.227 753 46 3 5590 6339 90496750 90496000 0.000000e+00 1103.0
19 TraesCS5B01G153900 chr6A 93.209 751 46 3 5590 6337 593455241 593455989 0.000000e+00 1099.0
20 TraesCS5B01G153900 chr6A 91.579 95 7 1 5208 5301 514495360 514495266 5.160000e-26 130.0
21 TraesCS5B01G153900 chr1D 93.113 755 44 5 5590 6339 31412350 31411599 0.000000e+00 1099.0
22 TraesCS5B01G153900 chr3D 93.094 753 47 3 5590 6339 511059533 511058783 0.000000e+00 1098.0
23 TraesCS5B01G153900 chr3D 86.382 492 55 11 5309 5796 9075924 9075441 1.570000e-145 527.0
24 TraesCS5B01G153900 chr3D 82.586 580 92 8 5305 5880 487414187 487413613 2.640000e-138 503.0
25 TraesCS5B01G153900 chr4A 82.517 858 130 12 5309 6158 520949357 520948512 0.000000e+00 736.0
26 TraesCS5B01G153900 chr4A 83.573 487 73 5 5310 5792 648682510 648682027 3.490000e-122 449.0
27 TraesCS5B01G153900 chr4B 85.449 701 94 6 5306 6002 46202644 46203340 0.000000e+00 723.0
28 TraesCS5B01G153900 chr6B 87.002 577 71 2 5309 5882 129298868 129298293 0.000000e+00 647.0
29 TraesCS5B01G153900 chr3B 79.951 818 133 28 5313 6114 474016569 474015767 1.980000e-159 573.0
30 TraesCS5B01G153900 chr7B 84.167 120 10 4 5025 5144 749409571 749409681 2.420000e-19 108.0
31 TraesCS5B01G153900 chr7B 91.892 74 6 0 5222 5295 749409694 749409767 3.130000e-18 104.0
32 TraesCS5B01G153900 chr7B 98.000 50 1 0 5245 5294 749409785 749409834 3.150000e-13 87.9
33 TraesCS5B01G153900 chr6D 89.091 55 6 0 103 157 313107117 313107171 1.140000e-07 69.4
34 TraesCS5B01G153900 chr1B 100.000 28 0 0 975 1002 665792696 665792723 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G153900 chr5B 283232889 283239227 6338 False 11707.0 11707 100.000000 1 6339 1 chr5B.!!$F1 6338
1 TraesCS5B01G153900 chr5D 250414096 250419528 5432 False 2607.0 6562 91.753333 1 5292 3 chr5D.!!$F2 5291
2 TraesCS5B01G153900 chr5D 481281234 481281984 750 False 1098.0 1098 93.113000 5590 6339 1 chr5D.!!$F1 749
3 TraesCS5B01G153900 chr5A 333737526 333743020 5494 False 1515.4 6477 88.958600 1 5295 5 chr5A.!!$F1 5294
4 TraesCS5B01G153900 chr2B 210667804 210669441 1637 True 1698.0 1698 85.871000 2178 3770 1 chr2B.!!$R1 1592
5 TraesCS5B01G153900 chr2B 500839692 500840689 997 True 1266.0 1266 89.594000 5309 6310 1 chr2B.!!$R2 1001
6 TraesCS5B01G153900 chr2A 148851264 148852607 1343 False 1670.0 1670 89.145000 2421 3761 1 chr2A.!!$F1 1340
7 TraesCS5B01G153900 chr2D 152663026 152664377 1351 True 1642.0 1642 88.618000 2421 3770 1 chr2D.!!$R2 1349
8 TraesCS5B01G153900 chr2D 151986472 151987223 751 False 1116.0 1116 93.510000 5590 6339 1 chr2D.!!$F1 749
9 TraesCS5B01G153900 chr2D 165537946 165538696 750 False 1114.0 1114 93.493000 5590 6339 1 chr2D.!!$F2 749
10 TraesCS5B01G153900 chr2D 103069057 103069803 746 True 1110.0 1110 93.493000 5590 6339 1 chr2D.!!$R1 749
11 TraesCS5B01G153900 chr2D 642128407 642128931 524 False 497.0 497 83.865000 5303 5831 1 chr2D.!!$F3 528
12 TraesCS5B01G153900 chrUn 90496000 90496750 750 True 1103.0 1103 93.227000 5590 6339 1 chrUn.!!$R1 749
13 TraesCS5B01G153900 chr6A 593455241 593455989 748 False 1099.0 1099 93.209000 5590 6337 1 chr6A.!!$F1 747
14 TraesCS5B01G153900 chr1D 31411599 31412350 751 True 1099.0 1099 93.113000 5590 6339 1 chr1D.!!$R1 749
15 TraesCS5B01G153900 chr3D 511058783 511059533 750 True 1098.0 1098 93.094000 5590 6339 1 chr3D.!!$R3 749
16 TraesCS5B01G153900 chr3D 487413613 487414187 574 True 503.0 503 82.586000 5305 5880 1 chr3D.!!$R2 575
17 TraesCS5B01G153900 chr4A 520948512 520949357 845 True 736.0 736 82.517000 5309 6158 1 chr4A.!!$R1 849
18 TraesCS5B01G153900 chr4B 46202644 46203340 696 False 723.0 723 85.449000 5306 6002 1 chr4B.!!$F1 696
19 TraesCS5B01G153900 chr6B 129298293 129298868 575 True 647.0 647 87.002000 5309 5882 1 chr6B.!!$R1 573
20 TraesCS5B01G153900 chr3B 474015767 474016569 802 True 573.0 573 79.951000 5313 6114 1 chr3B.!!$R1 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 161 0.535335 GTGTCTATCGACCAGCCCAA 59.465 55.000 0.00 0.00 39.47 4.12 F
814 883 0.749818 TTTGCCGAGGTGAAGCAACA 60.750 50.000 0.00 0.00 45.57 3.33 F
1157 1289 0.034089 AAATGGCAGGGTGGTAGAGC 60.034 55.000 0.00 0.00 0.00 4.09 F
1761 1899 0.393537 CCCCTTGCTAGGCTCACTTG 60.394 60.000 8.91 0.00 40.50 3.16 F
2189 2335 1.011242 CGCAACAATATGTCGCCCG 60.011 57.895 0.00 0.00 22.99 6.13 F
2666 2857 1.672363 CAAATAATCAGCTGCTCCGCA 59.328 47.619 9.47 0.00 36.92 5.69 F
2827 3018 2.168936 TGCATTGCAATTCCTCCAATCC 59.831 45.455 9.83 0.00 34.76 3.01 F
4417 4640 2.223805 GCTTTGGTCCAAACAGAACTGG 60.224 50.000 13.26 2.55 34.19 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 1225 0.179000 CCGGGTAGAAGCTCTGCAAT 59.821 55.000 0.00 0.0 30.22 3.56 R
2323 2482 0.606401 ACTGGCACACTGGGAAATCG 60.606 55.000 0.00 0.0 0.00 3.34 R
3133 3324 1.311859 ATGTGGCATCAACCATAGCG 58.688 50.000 0.00 0.0 43.01 4.26 R
3247 3438 3.137913 AGGCCAGAGCATTATCAACATCT 59.862 43.478 5.01 0.0 42.56 2.90 R
3902 4120 2.010497 TGCACAAAGTTACACGCAAGA 58.990 42.857 0.00 0.0 43.62 3.02 R
4652 4878 0.831307 ATTGGCTTCGGACTCCTACC 59.169 55.000 0.00 0.0 0.00 3.18 R
4826 5052 6.449635 ACTTTGTTTAAGCTCATGTCACAA 57.550 33.333 0.00 0.0 37.37 3.33 R
5352 5674 0.107897 AAAGTGGCCGTATGCATCGA 60.108 50.000 16.69 0.0 43.89 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.767088 AGGTAAAATCCTACTCCCGCC 59.233 52.381 0.00 0.00 35.87 6.13
63 64 0.837940 ATCCTACTCCCGCCCTTTTC 59.162 55.000 0.00 0.00 0.00 2.29
69 70 1.003928 ACTCCCGCCCTTTTCGTATTT 59.996 47.619 0.00 0.00 0.00 1.40
85 86 9.581289 TTTTCGTATTTATTGGATGGGATACAT 57.419 29.630 0.00 0.00 44.18 2.29
117 123 9.314321 GGAATTGTAATGATCATAGGTATACCG 57.686 37.037 16.31 2.61 42.08 4.02
129 135 7.058525 TCATAGGTATACCGAAGAGTTGAGAA 58.941 38.462 16.31 0.00 42.08 2.87
130 136 7.724506 TCATAGGTATACCGAAGAGTTGAGAAT 59.275 37.037 16.31 0.00 42.08 2.40
153 161 0.535335 GTGTCTATCGACCAGCCCAA 59.465 55.000 0.00 0.00 39.47 4.12
177 185 1.338389 CGTGTGGGAGTATTTTCCGGT 60.338 52.381 0.00 0.00 38.17 5.28
185 193 3.007723 GGAGTATTTTCCGGTAGATCCCC 59.992 52.174 0.00 0.00 0.00 4.81
207 215 5.163437 CCCCAATAGGTTACTCTAGTCACAC 60.163 48.000 0.00 0.00 0.00 3.82
243 251 5.324409 TGAGAAACATGGAAGCATTTACCT 58.676 37.500 0.00 0.00 0.00 3.08
247 255 6.375455 AGAAACATGGAAGCATTTACCTAGTG 59.625 38.462 0.00 0.00 0.00 2.74
250 258 4.634012 TGGAAGCATTTACCTAGTGTGT 57.366 40.909 0.00 0.00 0.00 3.72
302 340 2.437413 GAAGTTTGGACTAAGGCCCAG 58.563 52.381 0.00 0.00 34.21 4.45
303 341 1.742308 AGTTTGGACTAAGGCCCAGA 58.258 50.000 8.92 0.00 33.32 3.86
339 378 4.929211 GGCTGGCTTTTTGTTAACTAATGG 59.071 41.667 7.22 3.24 0.00 3.16
340 379 5.279256 GGCTGGCTTTTTGTTAACTAATGGA 60.279 40.000 7.22 0.00 0.00 3.41
385 424 2.100916 TCCTTACTTCATAGGCTCACGC 59.899 50.000 0.00 0.00 0.00 5.34
412 451 3.684103 TTGTTCGTGCGACATTTCTTT 57.316 38.095 0.00 0.00 0.00 2.52
456 495 4.501571 GCTTCATCGTCTAATAGAAGGCCA 60.502 45.833 5.01 0.00 36.94 5.36
464 503 2.851263 AATAGAAGGCCAACACGTGA 57.149 45.000 25.01 0.00 0.00 4.35
515 555 7.639062 ATGGTATCAGATCCAAAATCCTACT 57.361 36.000 5.88 0.00 37.27 2.57
540 580 6.815641 TGTTAACTTAACGGTGACTTGTTACA 59.184 34.615 7.22 0.00 41.50 2.41
541 581 7.332926 TGTTAACTTAACGGTGACTTGTTACAA 59.667 33.333 7.22 0.00 41.50 2.41
553 593 3.315191 ACTTGTTACAATGACTGCCACAC 59.685 43.478 0.00 0.00 0.00 3.82
554 594 2.924421 TGTTACAATGACTGCCACACA 58.076 42.857 0.00 0.00 0.00 3.72
729 797 3.765381 TGGGACAAAAGAGCATGAATGA 58.235 40.909 0.00 0.00 31.92 2.57
749 817 2.368548 GACCCAAAACAGCCCAAAAGAT 59.631 45.455 0.00 0.00 0.00 2.40
753 821 3.568538 CAAAACAGCCCAAAAGATCGAG 58.431 45.455 0.00 0.00 0.00 4.04
756 824 2.704572 ACAGCCCAAAAGATCGAGAAG 58.295 47.619 0.00 0.00 0.00 2.85
757 825 1.399791 CAGCCCAAAAGATCGAGAAGC 59.600 52.381 0.00 0.00 0.00 3.86
762 830 1.460743 CAAAAGATCGAGAAGCACGCA 59.539 47.619 0.00 0.00 0.00 5.24
783 851 1.225983 CCGGCCCATTGACCATGTA 59.774 57.895 0.00 0.00 0.00 2.29
786 854 1.202806 CGGCCCATTGACCATGTATCT 60.203 52.381 0.00 0.00 0.00 1.98
814 883 0.749818 TTTGCCGAGGTGAAGCAACA 60.750 50.000 0.00 0.00 45.57 3.33
943 1013 4.402851 TGCAGGGCACACATTCTC 57.597 55.556 0.00 0.00 31.71 2.87
944 1014 1.763120 TGCAGGGCACACATTCTCT 59.237 52.632 0.00 0.00 31.71 3.10
945 1015 0.983467 TGCAGGGCACACATTCTCTA 59.017 50.000 0.00 0.00 31.71 2.43
948 1018 3.199727 TGCAGGGCACACATTCTCTATTA 59.800 43.478 0.00 0.00 31.71 0.98
949 1019 4.199310 GCAGGGCACACATTCTCTATTAA 58.801 43.478 0.00 0.00 0.00 1.40
950 1020 4.640201 GCAGGGCACACATTCTCTATTAAA 59.360 41.667 0.00 0.00 0.00 1.52
951 1021 5.220931 GCAGGGCACACATTCTCTATTAAAG 60.221 44.000 0.00 0.00 0.00 1.85
968 1068 8.581578 TCTATTAAAGTACCCAAAAGCAAAAGG 58.418 33.333 0.00 0.00 0.00 3.11
1019 1151 0.878961 GGCGGTAATAAGTCGGCCTG 60.879 60.000 0.00 0.00 43.49 4.85
1036 1168 2.817396 GGTCTCTTGCTCTGCGGC 60.817 66.667 0.00 0.00 0.00 6.53
1045 1177 4.544689 CTCTGCGGCGAGGACGAG 62.545 72.222 12.98 3.97 42.66 4.18
1051 1183 4.521062 GGCGAGGACGAGCTGCAT 62.521 66.667 1.02 0.00 42.66 3.96
1073 1205 4.856801 GGTGCGACGGATGGGCAT 62.857 66.667 0.00 0.00 39.14 4.40
1074 1206 3.576356 GTGCGACGGATGGGCATG 61.576 66.667 0.00 0.00 39.14 4.06
1093 1225 2.204463 TGATGGGCTGGGAGTAATGAA 58.796 47.619 0.00 0.00 0.00 2.57
1110 1242 2.991250 TGAATTGCAGAGCTTCTACCC 58.009 47.619 0.00 0.00 0.00 3.69
1111 1243 1.936547 GAATTGCAGAGCTTCTACCCG 59.063 52.381 0.00 0.00 0.00 5.28
1157 1289 0.034089 AAATGGCAGGGTGGTAGAGC 60.034 55.000 0.00 0.00 0.00 4.09
1178 1310 1.523032 GCGAGATTGTTACCGGGGG 60.523 63.158 6.32 0.00 0.00 5.40
1212 1344 2.196229 CCTCCCGATCTCCTCCGT 59.804 66.667 0.00 0.00 0.00 4.69
1426 1558 1.592400 CTCCGTCGACCAGGTTAGCA 61.592 60.000 10.58 0.00 0.00 3.49
1513 1650 1.237285 AAGTTGGATCTGCGGCACAC 61.237 55.000 0.00 0.00 0.00 3.82
1633 1770 1.197721 GTCCTGTTCTTGCGATTGTGG 59.802 52.381 0.00 0.00 0.00 4.17
1636 1773 1.603802 CTGTTCTTGCGATTGTGGTGT 59.396 47.619 0.00 0.00 0.00 4.16
1676 1813 1.206831 GAGCGCCGTCTTGTTTTCC 59.793 57.895 2.29 0.00 0.00 3.13
1677 1814 1.227853 AGCGCCGTCTTGTTTTCCT 60.228 52.632 2.29 0.00 0.00 3.36
1680 1817 0.661020 CGCCGTCTTGTTTTCCTTGT 59.339 50.000 0.00 0.00 0.00 3.16
1704 1842 2.550180 GTTTGTTGCTTGTCCTCCTCTC 59.450 50.000 0.00 0.00 0.00 3.20
1729 1867 4.082517 TCTGTTCGTCTTCTCCTGATTCAG 60.083 45.833 6.70 6.70 0.00 3.02
1748 1886 1.596408 CCCCAAAATTCGCCCCTTG 59.404 57.895 0.00 0.00 0.00 3.61
1750 1888 1.543944 CCCAAAATTCGCCCCTTGCT 61.544 55.000 0.00 0.00 38.05 3.91
1753 1891 1.134946 CAAAATTCGCCCCTTGCTAGG 59.865 52.381 7.29 7.29 41.60 3.02
1761 1899 0.393537 CCCCTTGCTAGGCTCACTTG 60.394 60.000 8.91 0.00 40.50 3.16
1784 1922 1.478916 GCTCTTCTCCCTTTAGCTCGT 59.521 52.381 0.00 0.00 0.00 4.18
1788 1926 2.509166 TCTCCCTTTAGCTCGTCTCA 57.491 50.000 0.00 0.00 0.00 3.27
1838 1976 3.004315 AGCGATTGAAACCAAAACGTCAT 59.996 39.130 0.00 0.00 33.48 3.06
1849 1987 1.892209 AAACGTCATTCTTTCGCCCT 58.108 45.000 0.00 0.00 0.00 5.19
1870 2008 4.693566 CCTGATTTGTTTGCTTCATTGCAT 59.306 37.500 0.00 0.00 42.96 3.96
1887 2025 1.771255 GCATCCCACTAGTCCAATCCT 59.229 52.381 0.00 0.00 0.00 3.24
2057 2203 9.589111 TTCAGGAGTTATTTTTGTTGGTAAAAC 57.411 29.630 0.00 0.00 29.89 2.43
2189 2335 1.011242 CGCAACAATATGTCGCCCG 60.011 57.895 0.00 0.00 22.99 6.13
2263 2417 6.121776 TCAGGTACTAACACATGGATGTTT 57.878 37.500 6.97 0.00 42.73 2.83
2323 2482 9.450807 GTATACTTCATTGTGTTAATGCAATCC 57.549 33.333 0.00 0.00 33.55 3.01
2666 2857 1.672363 CAAATAATCAGCTGCTCCGCA 59.328 47.619 9.47 0.00 36.92 5.69
2827 3018 2.168936 TGCATTGCAATTCCTCCAATCC 59.831 45.455 9.83 0.00 34.76 3.01
2911 3102 4.302067 TGATCTCTAAGGCATTTCCTCCT 58.698 43.478 0.00 0.00 46.94 3.69
2998 3189 3.522750 AGACAGGATCTTCCTTCATGCTT 59.477 43.478 0.00 0.00 46.91 3.91
3163 3354 5.356751 GGTTGATGCCACATACAACTCAATA 59.643 40.000 15.70 0.00 41.23 1.90
3247 3438 3.659092 CGCAAAGAACCGGCTGCA 61.659 61.111 0.00 0.00 34.39 4.41
3750 3941 5.506708 TCCAAGTAAGCTAAATTTCCTCCC 58.493 41.667 0.00 0.00 0.00 4.30
3770 3961 6.268825 TCCCGAGTATTCATGTATTAGCTC 57.731 41.667 0.00 0.00 0.00 4.09
3807 3998 9.953697 CCATAGTAGAACTAACTACAGAATCAC 57.046 37.037 0.00 0.00 43.38 3.06
3811 4002 8.732531 AGTAGAACTAACTACAGAATCACTCAC 58.267 37.037 0.00 0.00 43.38 3.51
3833 4024 6.070824 TCACTAGATGCAGGTTTGAGTATTCA 60.071 38.462 0.00 0.00 0.00 2.57
3834 4025 6.765036 CACTAGATGCAGGTTTGAGTATTCAT 59.235 38.462 0.00 0.00 32.27 2.57
3835 4026 6.765036 ACTAGATGCAGGTTTGAGTATTCATG 59.235 38.462 0.00 0.00 32.27 3.07
3902 4120 4.922206 TGACCTGATTGGCTGATTTACTT 58.078 39.130 0.00 0.00 40.22 2.24
3996 4216 5.827797 ACAGAAAGCTTTTTGTATCCTGTGA 59.172 36.000 28.37 0.00 34.24 3.58
4055 4275 5.583932 TCATTAGCCATCATAGCTCCTCTA 58.416 41.667 0.00 0.00 41.83 2.43
4076 4296 9.553064 CCTCTAATCTGTGTATTTGCTCTATTT 57.447 33.333 0.00 0.00 0.00 1.40
4086 4306 9.463443 GTGTATTTGCTCTATTTTGTTTTCTGT 57.537 29.630 0.00 0.00 0.00 3.41
4125 4345 9.781834 CCGTCAAAAATTTATTGTATCTTAGCA 57.218 29.630 0.00 0.00 0.00 3.49
4417 4640 2.223805 GCTTTGGTCCAAACAGAACTGG 60.224 50.000 13.26 2.55 34.19 4.00
4539 4762 8.390354 CAAGATTCAGACGCTATTGTTTATTCA 58.610 33.333 0.00 0.00 0.00 2.57
4622 4845 6.959639 ACTGAATGTACATGTTTGTTTCCT 57.040 33.333 9.63 0.00 37.28 3.36
4652 4878 6.558771 TCGAATGAGGCATTATAAACATGG 57.441 37.500 0.00 0.00 33.90 3.66
4762 4988 9.244292 AGTCATCTTGTAGTTACTCACATTCTA 57.756 33.333 0.00 0.00 0.00 2.10
4839 5065 2.035066 GCTTTGGTTTGTGACATGAGCT 59.965 45.455 0.00 0.00 0.00 4.09
4911 5137 0.456312 CGCAGGAAGGTGAGTCGTAC 60.456 60.000 0.00 0.00 0.00 3.67
4912 5138 0.889306 GCAGGAAGGTGAGTCGTACT 59.111 55.000 0.00 0.00 0.00 2.73
4913 5139 1.272769 GCAGGAAGGTGAGTCGTACTT 59.727 52.381 0.00 0.00 0.00 2.24
5023 5255 0.464554 GGTATGGCTTCTGGACCTGC 60.465 60.000 0.00 0.00 0.00 4.85
5134 5366 4.789095 ACATTGTGACTGAACGTTGTAC 57.211 40.909 5.00 0.00 0.00 2.90
5184 5419 4.441634 GCGCCTCTTGTTAGATAGAAAGGA 60.442 45.833 0.00 0.00 0.00 3.36
5223 5545 7.398829 TCACTTTATTGAGGTAAATGCCAGTA 58.601 34.615 0.00 0.00 0.00 2.74
5285 5607 6.040842 AGGTGCACTAATTTTGAATGTCAAGT 59.959 34.615 17.98 0.00 37.70 3.16
5289 5611 6.922957 GCACTAATTTTGAATGTCAAGTTGGA 59.077 34.615 2.34 0.00 37.70 3.53
5295 5617 7.826260 TTTTGAATGTCAAGTTGGAAAACTC 57.174 32.000 2.34 0.00 37.70 3.01
5296 5618 5.514274 TGAATGTCAAGTTGGAAAACTCC 57.486 39.130 2.34 0.00 31.53 3.85
5297 5619 4.952957 TGAATGTCAAGTTGGAAAACTCCA 59.047 37.500 2.34 0.00 38.14 3.86
5298 5620 5.598005 TGAATGTCAAGTTGGAAAACTCCAT 59.402 36.000 2.34 0.00 39.86 3.41
5299 5621 6.098124 TGAATGTCAAGTTGGAAAACTCCATT 59.902 34.615 2.34 9.18 39.86 3.16
5300 5622 5.930837 TGTCAAGTTGGAAAACTCCATTT 57.069 34.783 2.34 0.00 39.86 2.32
5301 5623 6.293004 TGTCAAGTTGGAAAACTCCATTTT 57.707 33.333 2.34 0.00 43.44 1.82
5302 5624 6.706295 TGTCAAGTTGGAAAACTCCATTTTT 58.294 32.000 2.34 0.00 40.73 1.94
5352 5674 2.361610 CCGGCCTCTGCATTTGGT 60.362 61.111 0.00 0.00 40.13 3.67
5401 5723 5.948992 ATTCTCACAAGACCTTACAAAGC 57.051 39.130 0.00 0.00 0.00 3.51
5470 5794 5.049129 GCTACACCTATCCAATTGATGAAGC 60.049 44.000 7.12 0.00 34.76 3.86
5483 5807 0.179073 ATGAAGCGGCGCAGATAGTT 60.179 50.000 35.02 18.42 0.00 2.24
5496 5820 4.503296 CGCAGATAGTTTGGGCCTAATACT 60.503 45.833 16.60 16.60 0.00 2.12
5513 5837 2.455674 ACTAAACAGACATCGCAGCA 57.544 45.000 0.00 0.00 0.00 4.41
5522 5847 2.484264 AGACATCGCAGCAAAACCTAAC 59.516 45.455 0.00 0.00 0.00 2.34
5581 5907 2.330216 GTATGGGGCATCTACCAGTCT 58.670 52.381 0.00 0.00 40.67 3.24
5584 5910 1.344393 TGGGGCATCTACCAGTCTGAT 60.344 52.381 0.00 0.00 31.92 2.90
5653 5982 2.031163 GCACTCAACCAGGACGCT 59.969 61.111 0.00 0.00 0.00 5.07
5663 5992 4.078516 AGGACGCTTGCCGGGTAC 62.079 66.667 2.18 0.00 42.52 3.34
5808 6192 0.616111 ATCCTCCCACAGCGAACTCT 60.616 55.000 0.00 0.00 0.00 3.24
5818 6202 2.277969 CAGCGAACTCTGAATCTGCAT 58.722 47.619 0.00 0.00 36.19 3.96
5822 6206 2.417586 CGAACTCTGAATCTGCATTGCA 59.582 45.455 11.50 11.50 36.92 4.08
5891 6275 1.702957 TCCACCAAAGAATCCGTCCTT 59.297 47.619 0.00 0.00 0.00 3.36
5940 6324 0.610785 GAATGACGCCCCCAAAGGAA 60.611 55.000 0.00 0.00 38.24 3.36
5983 6367 0.961753 TCACCCGATCATCCGATCTG 59.038 55.000 0.00 0.00 45.11 2.90
6073 6465 2.903357 CAGATAGCGCCACCACCT 59.097 61.111 2.29 0.00 0.00 4.00
6075 6467 1.381872 AGATAGCGCCACCACCTCT 60.382 57.895 2.29 0.00 0.00 3.69
6086 6479 1.133809 ACCACCTCTGGCCTTAGCAA 61.134 55.000 3.32 0.00 42.08 3.91
6114 6507 4.275936 CGAAGTCAAGTTTTCACCCAGATT 59.724 41.667 0.00 0.00 0.00 2.40
6125 6518 3.170717 TCACCCAGATTAGTTCGAAGGT 58.829 45.455 0.00 0.00 0.00 3.50
6192 6589 2.040606 ACCCTGGAGTACCGGCAT 59.959 61.111 0.00 0.00 40.99 4.40
6326 6723 4.996434 GCCTGCACACGCCAGAGT 62.996 66.667 0.00 0.00 37.32 3.24
6331 6728 2.281070 CACACGCCAGAGTGCCTT 60.281 61.111 1.14 0.00 45.45 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.952773 TCCCATCCAATAAATACGAAAAGG 57.047 37.500 0.00 0.00 0.00 3.11
63 64 9.443323 TGTAATGTATCCCATCCAATAAATACG 57.557 33.333 0.00 0.00 31.75 3.06
69 70 7.640577 TCCTTGTAATGTATCCCATCCAATA 57.359 36.000 0.00 0.00 31.75 1.90
117 123 8.963130 CGATAGACACATTATTCTCAACTCTTC 58.037 37.037 0.00 0.00 39.76 2.87
159 167 3.443052 TCTACCGGAAAATACTCCCACA 58.557 45.455 9.46 0.00 31.03 4.17
177 185 5.698369 AGAGTAACCTATTGGGGGATCTA 57.302 43.478 0.00 0.00 40.03 1.98
185 193 5.356190 TCGTGTGACTAGAGTAACCTATTGG 59.644 44.000 0.00 0.00 39.83 3.16
207 215 4.914504 CATGTTTCTCATCCGATCTACTCG 59.085 45.833 0.00 0.00 39.81 4.18
243 251 2.557869 AGGCCCCTTAATGACACACTA 58.442 47.619 0.00 0.00 0.00 2.74
247 255 1.211949 TGCTAGGCCCCTTAATGACAC 59.788 52.381 0.00 0.00 0.00 3.67
250 258 1.425066 CCATGCTAGGCCCCTTAATGA 59.575 52.381 0.00 0.00 0.00 2.57
340 379 1.298667 GGCACGACCCAATACAGGT 59.701 57.895 0.00 0.00 41.50 4.00
385 424 2.176546 CGCACGAACAATGGGCAG 59.823 61.111 0.00 0.00 0.00 4.85
412 451 3.365868 GCTACGCATTGGTTGTTCATTGA 60.366 43.478 0.00 0.00 0.00 2.57
436 475 4.404394 TGTTGGCCTTCTATTAGACGATGA 59.596 41.667 3.32 0.00 0.00 2.92
456 495 1.340248 ACTGACGATCCTTCACGTGTT 59.660 47.619 16.51 0.00 42.74 3.32
464 503 0.321653 GTGGCCAACTGACGATCCTT 60.322 55.000 7.24 0.00 0.00 3.36
515 555 6.815641 TGTAACAAGTCACCGTTAAGTTAACA 59.184 34.615 22.33 3.44 38.57 2.41
540 580 2.057137 AAGTGTGTGTGGCAGTCATT 57.943 45.000 0.00 0.00 0.00 2.57
541 581 1.949525 GAAAGTGTGTGTGGCAGTCAT 59.050 47.619 0.00 0.00 0.00 3.06
553 593 1.136000 TGCGCGAATCATGAAAGTGTG 60.136 47.619 12.10 0.00 0.00 3.82
554 594 1.155889 TGCGCGAATCATGAAAGTGT 58.844 45.000 12.10 0.00 0.00 3.55
668 727 4.337013 AAAAATGATCCGCGGGCT 57.663 50.000 27.83 13.72 0.00 5.19
729 797 1.872773 TCTTTTGGGCTGTTTTGGGT 58.127 45.000 0.00 0.00 0.00 4.51
749 817 2.738521 GGCTTGCGTGCTTCTCGA 60.739 61.111 0.92 0.00 0.00 4.04
762 830 3.301222 ATGGTCAATGGGCCGGCTT 62.301 57.895 28.56 10.47 0.00 4.35
775 843 1.948145 ACGAGGACGAGATACATGGTC 59.052 52.381 0.00 0.00 42.66 4.02
783 851 4.913126 GGCAAACGAGGACGAGAT 57.087 55.556 0.00 0.00 42.66 2.75
936 1006 8.957466 GCTTTTGGGTACTTTAATAGAGAATGT 58.043 33.333 0.00 0.00 0.00 2.71
940 1010 8.927675 TTTGCTTTTGGGTACTTTAATAGAGA 57.072 30.769 0.00 0.00 0.00 3.10
941 1011 9.626045 CTTTTGCTTTTGGGTACTTTAATAGAG 57.374 33.333 0.00 0.00 0.00 2.43
942 1012 8.581578 CCTTTTGCTTTTGGGTACTTTAATAGA 58.418 33.333 0.00 0.00 0.00 1.98
943 1013 8.364894 ACCTTTTGCTTTTGGGTACTTTAATAG 58.635 33.333 0.00 0.00 0.00 1.73
944 1014 8.252624 ACCTTTTGCTTTTGGGTACTTTAATA 57.747 30.769 0.00 0.00 0.00 0.98
945 1015 7.131907 ACCTTTTGCTTTTGGGTACTTTAAT 57.868 32.000 0.00 0.00 0.00 1.40
948 1018 4.440940 CGACCTTTTGCTTTTGGGTACTTT 60.441 41.667 0.00 0.00 0.00 2.66
949 1019 3.067601 CGACCTTTTGCTTTTGGGTACTT 59.932 43.478 0.00 0.00 0.00 2.24
950 1020 2.621526 CGACCTTTTGCTTTTGGGTACT 59.378 45.455 0.00 0.00 0.00 2.73
951 1021 2.619646 TCGACCTTTTGCTTTTGGGTAC 59.380 45.455 0.00 0.00 0.00 3.34
1002 1102 0.462789 ACCAGGCCGACTTATTACCG 59.537 55.000 0.00 0.00 0.00 4.02
1003 1103 1.761198 AGACCAGGCCGACTTATTACC 59.239 52.381 0.00 0.00 0.00 2.85
1006 1106 1.867363 AGAGACCAGGCCGACTTATT 58.133 50.000 0.00 0.00 0.00 1.40
1007 1107 1.482593 CAAGAGACCAGGCCGACTTAT 59.517 52.381 0.00 0.00 0.00 1.73
1019 1151 2.817396 GCCGCAGAGCAAGAGACC 60.817 66.667 0.00 0.00 0.00 3.85
1036 1168 2.524034 CATATATGCAGCTCGTCCTCG 58.476 52.381 0.00 0.00 38.55 4.63
1045 1177 0.439985 CGTCGCACCATATATGCAGC 59.560 55.000 7.24 11.49 43.57 5.25
1048 1180 1.660607 CATCCGTCGCACCATATATGC 59.339 52.381 7.24 0.00 39.81 3.14
1049 1181 2.270923 CCATCCGTCGCACCATATATG 58.729 52.381 5.68 5.68 0.00 1.78
1050 1182 1.207089 CCCATCCGTCGCACCATATAT 59.793 52.381 0.00 0.00 0.00 0.86
1051 1183 0.606096 CCCATCCGTCGCACCATATA 59.394 55.000 0.00 0.00 0.00 0.86
1072 1204 2.421725 TCATTACTCCCAGCCCATCAT 58.578 47.619 0.00 0.00 0.00 2.45
1073 1205 1.891933 TCATTACTCCCAGCCCATCA 58.108 50.000 0.00 0.00 0.00 3.07
1074 1206 3.515602 ATTCATTACTCCCAGCCCATC 57.484 47.619 0.00 0.00 0.00 3.51
1093 1225 0.179000 CCGGGTAGAAGCTCTGCAAT 59.821 55.000 0.00 0.00 30.22 3.56
1110 1242 1.853319 GCGTGACACTTGTTCTCCG 59.147 57.895 3.68 0.00 0.00 4.63
1111 1243 1.557443 CCGCGTGACACTTGTTCTCC 61.557 60.000 4.92 0.00 0.00 3.71
1157 1289 0.870307 CCCGGTAACAATCTCGCTCG 60.870 60.000 0.00 0.00 0.00 5.03
1271 1403 2.120718 AGAGGGACTTGGAGGCGT 59.879 61.111 0.00 0.00 41.55 5.68
1426 1558 1.707200 GAGAAGGAGGAGGAGGGGT 59.293 63.158 0.00 0.00 0.00 4.95
1528 1665 0.238553 GAGCTGCGAAAAACAGGGTC 59.761 55.000 0.00 0.00 35.62 4.46
1642 1779 1.493311 CTCCGAGAAACGCAACTGC 59.507 57.895 0.00 0.00 41.07 4.40
1643 1780 1.493311 GCTCCGAGAAACGCAACTG 59.507 57.895 0.00 0.00 41.07 3.16
1644 1781 2.022129 CGCTCCGAGAAACGCAACT 61.022 57.895 0.00 0.00 41.07 3.16
1664 1801 3.668596 ACGAACAAGGAAAACAAGACG 57.331 42.857 0.00 0.00 0.00 4.18
1667 1804 5.667644 GCAACAAACGAACAAGGAAAACAAG 60.668 40.000 0.00 0.00 0.00 3.16
1676 1813 2.851824 GGACAAGCAACAAACGAACAAG 59.148 45.455 0.00 0.00 0.00 3.16
1677 1814 2.490115 AGGACAAGCAACAAACGAACAA 59.510 40.909 0.00 0.00 0.00 2.83
1680 1817 1.673920 GGAGGACAAGCAACAAACGAA 59.326 47.619 0.00 0.00 0.00 3.85
1704 1842 1.535896 TCAGGAGAAGACGAACAGACG 59.464 52.381 0.00 0.00 39.31 4.18
1729 1867 2.290287 AAGGGGCGAATTTTGGGGC 61.290 57.895 0.00 0.00 0.00 5.80
1748 1886 1.082690 GAGCAACAAGTGAGCCTAGC 58.917 55.000 0.00 0.00 0.00 3.42
1750 1888 2.634940 AGAAGAGCAACAAGTGAGCCTA 59.365 45.455 0.00 0.00 0.00 3.93
1753 1891 1.803555 GGAGAAGAGCAACAAGTGAGC 59.196 52.381 0.00 0.00 0.00 4.26
1756 1894 2.557920 AGGGAGAAGAGCAACAAGTG 57.442 50.000 0.00 0.00 0.00 3.16
1761 1899 3.266636 GAGCTAAAGGGAGAAGAGCAAC 58.733 50.000 0.00 0.00 35.55 4.17
1784 1922 3.690460 GGCAAAGAAAGAATCCCTGAGA 58.310 45.455 0.00 0.00 0.00 3.27
1788 1926 1.177401 GCGGCAAAGAAAGAATCCCT 58.823 50.000 0.00 0.00 0.00 4.20
1819 1957 7.463469 AAAGAATGACGTTTTGGTTTCAATC 57.537 32.000 0.00 0.00 32.28 2.67
1838 1976 3.798548 GCAAACAAATCAGGGCGAAAGAA 60.799 43.478 0.00 0.00 0.00 2.52
1870 2008 2.225779 TGGAAGGATTGGACTAGTGGGA 60.226 50.000 0.00 0.00 0.00 4.37
1907 2045 3.895656 ACCTTAAGCTGGAAAAAGGAACC 59.104 43.478 15.15 0.00 40.85 3.62
1947 2086 9.442062 TCTGTATAAACTGGATTGGTTAGGATA 57.558 33.333 0.00 0.00 0.00 2.59
2027 2166 7.791029 ACCAACAAAAATAACTCCTGAAATGT 58.209 30.769 0.00 0.00 0.00 2.71
2057 2203 8.826710 TCACTCAACAAGAACATAAACAACTAG 58.173 33.333 0.00 0.00 0.00 2.57
2189 2335 1.139947 GCACGGCCTCTAGTCTGTC 59.860 63.158 0.00 0.00 0.00 3.51
2323 2482 0.606401 ACTGGCACACTGGGAAATCG 60.606 55.000 0.00 0.00 0.00 3.34
2666 2857 2.063979 TCGGACGAGATTGCCCCAT 61.064 57.895 0.00 0.00 0.00 4.00
2911 3102 3.069016 TCGAGTTGAAAGTGGCAGTAGAA 59.931 43.478 0.00 0.00 0.00 2.10
3133 3324 1.311859 ATGTGGCATCAACCATAGCG 58.688 50.000 0.00 0.00 43.01 4.26
3163 3354 7.492344 GGAATATCGGTGAAATTCATTGCTTTT 59.508 33.333 0.00 0.00 32.42 2.27
3247 3438 3.137913 AGGCCAGAGCATTATCAACATCT 59.862 43.478 5.01 0.00 42.56 2.90
3770 3961 4.820716 AGTTCTACTATGGCAGTACCTACG 59.179 45.833 0.00 0.00 38.80 3.51
3807 3998 4.199432 ACTCAAACCTGCATCTAGTGAG 57.801 45.455 11.05 11.05 37.59 3.51
3811 4002 6.765036 ACATGAATACTCAAACCTGCATCTAG 59.235 38.462 0.00 0.00 34.49 2.43
3833 4024 5.828328 TGAGATAGTGAGACCAACGATACAT 59.172 40.000 0.00 0.00 0.00 2.29
3834 4025 5.190677 TGAGATAGTGAGACCAACGATACA 58.809 41.667 0.00 0.00 0.00 2.29
3835 4026 5.752892 TGAGATAGTGAGACCAACGATAC 57.247 43.478 0.00 0.00 0.00 2.24
3902 4120 2.010497 TGCACAAAGTTACACGCAAGA 58.990 42.857 0.00 0.00 43.62 3.02
3958 4178 4.536489 AGCTTTCTGTTTCACCCCTAGTAT 59.464 41.667 0.00 0.00 0.00 2.12
4018 4238 7.283127 TGATGGCTAATGATTAGGTGAAACTTC 59.717 37.037 13.60 0.00 36.74 3.01
4076 4296 5.009610 GGCAGATTAAGGACACAGAAAACAA 59.990 40.000 0.00 0.00 0.00 2.83
4081 4301 2.301870 ACGGCAGATTAAGGACACAGAA 59.698 45.455 0.00 0.00 0.00 3.02
4086 4306 3.410631 TTTGACGGCAGATTAAGGACA 57.589 42.857 0.00 0.00 0.00 4.02
4140 4361 9.430399 ACCTACCAGACTAATTAGCATAAAGTA 57.570 33.333 12.54 6.48 0.00 2.24
4386 4609 1.064017 TGGACCAAAGCAACCTTCTGT 60.064 47.619 0.00 0.00 0.00 3.41
4417 4640 7.414540 CCAATACTTCCACAATTGAGCTACTTC 60.415 40.741 13.59 0.00 33.38 3.01
4452 4675 3.446442 AACAAGCCAAGTCATCAGGAT 57.554 42.857 0.00 0.00 0.00 3.24
4539 4762 4.664677 GTGTCTGAGCCGCGTGGT 62.665 66.667 17.91 3.07 37.67 4.16
4619 4842 5.745312 ATGCCTCATTCGATATACAAGGA 57.255 39.130 0.00 0.00 0.00 3.36
4620 4843 9.599866 TTATAATGCCTCATTCGATATACAAGG 57.400 33.333 0.00 0.00 35.54 3.61
4652 4878 0.831307 ATTGGCTTCGGACTCCTACC 59.169 55.000 0.00 0.00 0.00 3.18
4826 5052 6.449635 ACTTTGTTTAAGCTCATGTCACAA 57.550 33.333 0.00 0.00 37.37 3.33
4911 5137 7.083875 TGAACTTACAAGAACACCAAAGAAG 57.916 36.000 0.00 0.00 0.00 2.85
4912 5138 7.455641 TTGAACTTACAAGAACACCAAAGAA 57.544 32.000 0.00 0.00 0.00 2.52
4913 5139 7.175990 AGTTTGAACTTACAAGAACACCAAAGA 59.824 33.333 0.00 0.00 35.21 2.52
5023 5255 2.593346 AGCAGAACTATCTTGGCTCG 57.407 50.000 0.00 0.00 31.24 5.03
5134 5366 2.897436 TCTCACGCATCTCATCCAAAG 58.103 47.619 0.00 0.00 0.00 2.77
5184 5419 7.175104 TCAATAAAGTGAGACAAATAGGGCTT 58.825 34.615 0.00 0.00 0.00 4.35
5271 5593 6.816140 GGAGTTTTCCAACTTGACATTCAAAA 59.184 34.615 0.00 0.00 43.79 2.44
5311 5633 6.437477 GGGTGTCATCCTCCTTTTCTAAAAAT 59.563 38.462 0.00 0.00 0.00 1.82
5333 5655 2.361610 CAAATGCAGAGGCCGGGT 60.362 61.111 2.18 0.00 40.13 5.28
5352 5674 0.107897 AAAGTGGCCGTATGCATCGA 60.108 50.000 16.69 0.00 43.89 3.59
5401 5723 4.923281 GGCTTTAGTTTTGCTGTTGTATGG 59.077 41.667 0.00 0.00 0.00 2.74
5470 5794 2.823829 GCCCAAACTATCTGCGCCG 61.824 63.158 4.18 0.00 0.00 6.46
5483 5807 5.765576 TGTCTGTTTAGTATTAGGCCCAA 57.234 39.130 0.00 0.00 0.00 4.12
5496 5820 3.304391 GGTTTTGCTGCGATGTCTGTTTA 60.304 43.478 0.00 0.00 0.00 2.01
5513 5837 6.296489 CCTCAGGTCTTAGATGGTTAGGTTTT 60.296 42.308 0.00 0.00 0.00 2.43
5571 5897 2.103373 GGAGTGCATCAGACTGGTAGA 58.897 52.381 1.81 0.00 0.00 2.59
5581 5907 0.325933 CCTGGTTGAGGAGTGCATCA 59.674 55.000 0.00 0.00 46.33 3.07
5584 5910 4.311700 TCCTGGTTGAGGAGTGCA 57.688 55.556 0.00 0.00 46.96 4.57
5764 6148 3.506096 CGCAGGAGGACGACGCTA 61.506 66.667 0.00 0.00 0.00 4.26
5808 6192 0.522626 CGTGGTGCAATGCAGATTCA 59.477 50.000 8.73 2.15 40.08 2.57
5822 6206 2.264794 GGATCTTGACGGCGTGGT 59.735 61.111 21.19 0.00 0.00 4.16
5891 6275 1.183030 ACACGTGATCGAGGGACCAA 61.183 55.000 25.01 0.00 40.62 3.67
5940 6324 2.651361 CGCTCTGGTGTCGTTCCT 59.349 61.111 0.00 0.00 0.00 3.36
5962 6346 0.962489 GATCGGATGATCGGGTGACT 59.038 55.000 0.00 0.00 41.51 3.41
5996 6388 0.631753 AGGCCACTCTCTGCTACCTA 59.368 55.000 5.01 0.00 0.00 3.08
6073 6465 1.604378 GGCTCTTGCTAAGGCCAGA 59.396 57.895 5.01 0.00 41.58 3.86
6075 6467 1.836999 TTCGGCTCTTGCTAAGGCCA 61.837 55.000 5.01 0.00 41.85 5.36
6086 6479 2.872858 GTGAAAACTTGACTTCGGCTCT 59.127 45.455 0.00 0.00 0.00 4.09
6125 6518 1.672854 CCGGGCACGAGAGTTGGATA 61.673 60.000 11.66 0.00 46.40 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.