Multiple sequence alignment - TraesCS5B01G153800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G153800 chr5B 100.000 4906 0 0 1 4906 283207666 283202761 0.000000e+00 9060.0
1 TraesCS5B01G153800 chr5B 85.018 821 119 4 2725 3543 283021696 283020878 0.000000e+00 832.0
2 TraesCS5B01G153800 chr5B 91.182 567 41 6 114 675 114122008 114122570 0.000000e+00 761.0
3 TraesCS5B01G153800 chr5B 83.559 517 81 4 1208 1722 283023217 283022703 9.550000e-132 481.0
4 TraesCS5B01G153800 chr5B 96.364 110 4 0 4 113 283222417 283222308 1.080000e-41 182.0
5 TraesCS5B01G153800 chr5B 95.536 112 5 0 2 113 281729266 281729155 3.900000e-41 180.0
6 TraesCS5B01G153800 chr5B 94.118 102 5 1 4748 4849 342196512 342196412 2.360000e-33 154.0
7 TraesCS5B01G153800 chr5B 82.840 169 21 6 4359 4523 528380206 528380370 1.420000e-30 145.0
8 TraesCS5B01G153800 chr5B 86.614 127 13 2 3648 3771 283020683 283020558 2.380000e-28 137.0
9 TraesCS5B01G153800 chr5B 81.356 177 24 6 4351 4523 505218670 505218841 8.570000e-28 135.0
10 TraesCS5B01G153800 chr5D 93.973 3501 122 30 877 4333 250409659 250406204 0.000000e+00 5214.0
11 TraesCS5B01G153800 chr5D 83.800 821 113 10 2725 3543 250073994 250073192 0.000000e+00 761.0
12 TraesCS5B01G153800 chr5D 79.665 777 120 19 981 1722 250075888 250075115 4.350000e-145 525.0
13 TraesCS5B01G153800 chr5D 82.530 166 24 4 4358 4521 525389371 525389533 1.840000e-29 141.0
14 TraesCS5B01G153800 chr5D 82.877 146 21 3 3648 3790 250073050 250072906 1.430000e-25 128.0
15 TraesCS5B01G153800 chr5D 90.909 55 5 0 4850 4904 250400631 250400577 1.890000e-09 75.0
16 TraesCS5B01G153800 chr5A 94.300 1649 82 8 1930 3576 333442023 333440385 0.000000e+00 2514.0
17 TraesCS5B01G153800 chr5A 93.775 996 34 10 877 1852 333442996 333442009 0.000000e+00 1471.0
18 TraesCS5B01G153800 chr5A 92.236 863 47 5 3662 4523 333440360 333439517 0.000000e+00 1205.0
19 TraesCS5B01G153800 chr5A 85.018 821 118 5 2725 3543 333420728 333419911 0.000000e+00 830.0
20 TraesCS5B01G153800 chr5A 83.815 519 76 8 1208 1722 333422078 333421564 2.050000e-133 486.0
21 TraesCS5B01G153800 chr5A 88.802 384 42 1 4524 4906 333439605 333439222 2.070000e-128 470.0
22 TraesCS5B01G153800 chr5A 81.006 179 25 7 3615 3790 333419806 333419634 3.080000e-27 134.0
23 TraesCS5B01G153800 chr5A 84.314 102 11 4 673 771 267989898 267989997 1.450000e-15 95.3
24 TraesCS5B01G153800 chr5A 79.699 133 20 5 673 802 532953132 532953004 6.760000e-14 89.8
25 TraesCS5B01G153800 chr6B 91.844 564 38 6 114 673 583187452 583186893 0.000000e+00 780.0
26 TraesCS5B01G153800 chr6B 90.551 127 11 1 2 128 584162481 584162356 3.040000e-37 167.0
27 TraesCS5B01G153800 chr6B 93.814 97 6 0 4754 4850 191993188 191993092 3.960000e-31 147.0
28 TraesCS5B01G153800 chr1B 91.192 579 39 8 114 685 647199447 647198874 0.000000e+00 776.0
29 TraesCS5B01G153800 chr1B 91.343 566 41 5 114 675 231742891 231743452 0.000000e+00 767.0
30 TraesCS5B01G153800 chr1B 91.270 126 8 3 1 124 514191258 514191134 8.450000e-38 169.0
31 TraesCS5B01G153800 chr1B 93.000 100 6 1 4751 4850 266920491 266920589 1.420000e-30 145.0
32 TraesCS5B01G153800 chr1B 81.538 130 17 5 673 799 331073388 331073263 3.120000e-17 100.0
33 TraesCS5B01G153800 chr1B 80.282 142 17 8 673 811 514891904 514891771 4.040000e-16 97.1
34 TraesCS5B01G153800 chr1B 87.719 57 7 0 4850 4906 544112757 544112813 3.170000e-07 67.6
35 TraesCS5B01G153800 chr7B 91.166 566 41 6 114 675 361141680 361141120 0.000000e+00 760.0
36 TraesCS5B01G153800 chr7B 90.829 567 42 8 114 675 242387004 242387565 0.000000e+00 750.0
37 TraesCS5B01G153800 chr7B 77.258 598 102 12 2952 3548 87148499 87147935 2.200000e-83 320.0
38 TraesCS5B01G153800 chr7B 85.714 105 10 4 673 774 371639907 371640009 6.720000e-19 106.0
39 TraesCS5B01G153800 chr7B 79.720 143 20 7 673 811 593122291 593122154 1.450000e-15 95.3
40 TraesCS5B01G153800 chr4B 90.989 566 43 5 114 675 89544004 89544565 0.000000e+00 756.0
41 TraesCS5B01G153800 chr4B 91.262 103 9 0 4748 4850 17268149 17268251 1.840000e-29 141.0
42 TraesCS5B01G153800 chr4B 91.262 103 9 0 4748 4850 621435798 621435900 1.840000e-29 141.0
43 TraesCS5B01G153800 chr4B 81.538 130 18 6 673 799 39186647 39186773 8.690000e-18 102.0
44 TraesCS5B01G153800 chr4B 80.420 143 19 7 673 811 350348982 350348845 3.120000e-17 100.0
45 TraesCS5B01G153800 chr4B 84.466 103 11 4 673 772 604314794 604314694 4.040000e-16 97.1
46 TraesCS5B01G153800 chr4B 83.810 105 12 4 673 774 252648762 252648660 1.450000e-15 95.3
47 TraesCS5B01G153800 chr4B 80.469 128 22 2 673 799 392794971 392795096 1.450000e-15 95.3
48 TraesCS5B01G153800 chr2B 91.005 567 41 7 114 675 336138033 336137472 0.000000e+00 756.0
49 TraesCS5B01G153800 chr2B 82.386 176 22 7 4353 4523 153163463 153163292 1.420000e-30 145.0
50 TraesCS5B01G153800 chr2B 85.714 105 10 4 673 774 422002270 422002372 6.720000e-19 106.0
51 TraesCS5B01G153800 chr2B 81.538 130 17 5 673 799 337212064 337212189 3.120000e-17 100.0
52 TraesCS5B01G153800 chr6D 90.669 568 42 7 114 675 405426724 405427286 0.000000e+00 745.0
53 TraesCS5B01G153800 chr6D 82.353 170 20 8 4359 4523 448654247 448654411 6.620000e-29 139.0
54 TraesCS5B01G153800 chr7A 78.312 853 133 32 2948 3784 127582002 127581186 2.040000e-138 503.0
55 TraesCS5B01G153800 chr7A 84.146 164 23 2 4361 4523 51490776 51490615 6.580000e-34 156.0
56 TraesCS5B01G153800 chr7A 81.538 130 17 5 673 799 406521608 406521733 3.120000e-17 100.0
57 TraesCS5B01G153800 chr7A 80.769 130 18 5 673 799 332138682 332138557 1.450000e-15 95.3
58 TraesCS5B01G153800 chr7A 81.905 105 14 4 673 774 495018219 495018321 3.150000e-12 84.2
59 TraesCS5B01G153800 chr7D 81.833 600 98 8 2948 3546 126647958 126647369 1.230000e-135 494.0
60 TraesCS5B01G153800 chr7D 77.554 597 101 17 2952 3548 126477519 126476956 3.660000e-86 329.0
61 TraesCS5B01G153800 chr7D 84.000 225 31 3 4524 4748 403744164 403744383 1.380000e-50 211.0
62 TraesCS5B01G153800 chr3D 86.818 220 26 2 4532 4751 123319461 123319245 4.910000e-60 243.0
63 TraesCS5B01G153800 chr3D 92.562 121 7 2 2 122 558095856 558095738 6.530000e-39 172.0
64 TraesCS5B01G153800 chr3D 90.076 131 11 2 2 131 456224878 456225007 8.450000e-38 169.0
65 TraesCS5B01G153800 chr3D 92.857 56 4 0 4851 4906 309932979 309932924 1.130000e-11 82.4
66 TraesCS5B01G153800 chr3B 86.364 220 28 1 4532 4751 24919054 24918837 6.350000e-59 239.0
67 TraesCS5B01G153800 chr3B 86.364 220 28 1 4532 4751 519364314 519364097 6.350000e-59 239.0
68 TraesCS5B01G153800 chr3B 85.333 225 31 2 4524 4748 127853908 127854130 1.060000e-56 231.0
69 TraesCS5B01G153800 chr3B 83.735 166 20 6 4361 4523 415662344 415662505 3.060000e-32 150.0
70 TraesCS5B01G153800 chr3B 81.538 130 17 5 673 799 655747869 655747744 3.120000e-17 100.0
71 TraesCS5B01G153800 chr3B 89.474 57 6 0 4850 4906 382705155 382705211 6.810000e-09 73.1
72 TraesCS5B01G153800 chrUn 85.345 232 31 3 4518 4748 241851051 241851280 2.280000e-58 237.0
73 TraesCS5B01G153800 chrUn 95.536 112 5 0 2 113 115245338 115245227 3.900000e-41 180.0
74 TraesCS5B01G153800 chr4A 85.590 229 29 3 4524 4752 599611606 599611382 2.280000e-58 237.0
75 TraesCS5B01G153800 chr4A 86.275 102 9 4 673 771 184224346 184224445 6.720000e-19 106.0
76 TraesCS5B01G153800 chr3A 86.175 217 27 3 4532 4748 79181443 79181656 1.060000e-56 231.0
77 TraesCS5B01G153800 chr3A 82.249 169 23 5 4360 4525 648739628 648739464 6.620000e-29 139.0
78 TraesCS5B01G153800 chr1D 95.536 112 5 0 2 113 87186412 87186523 3.900000e-41 180.0
79 TraesCS5B01G153800 chr2D 89.922 129 11 2 2 130 477846244 477846370 1.090000e-36 165.0
80 TraesCS5B01G153800 chr2D 93.204 103 7 0 4748 4850 459819836 459819938 8.510000e-33 152.0
81 TraesCS5B01G153800 chr2D 92.857 98 7 0 4751 4848 380417214 380417117 5.120000e-30 143.0
82 TraesCS5B01G153800 chr4D 92.233 103 7 1 4745 4847 385744488 385744589 1.420000e-30 145.0
83 TraesCS5B01G153800 chr2A 79.021 143 21 7 673 811 288207034 288206897 6.760000e-14 89.8
84 TraesCS5B01G153800 chr1A 83.333 102 12 4 673 771 581062140 581062239 6.760000e-14 89.8
85 TraesCS5B01G153800 chr1A 82.075 106 13 5 669 771 486711373 486711475 8.750000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G153800 chr5B 283202761 283207666 4905 True 9060.000000 9060 100.000000 1 4906 1 chr5B.!!$R2 4905
1 TraesCS5B01G153800 chr5B 114122008 114122570 562 False 761.000000 761 91.182000 114 675 1 chr5B.!!$F1 561
2 TraesCS5B01G153800 chr5B 283020558 283023217 2659 True 483.333333 832 85.063667 1208 3771 3 chr5B.!!$R5 2563
3 TraesCS5B01G153800 chr5D 250406204 250409659 3455 True 5214.000000 5214 93.973000 877 4333 1 chr5D.!!$R2 3456
4 TraesCS5B01G153800 chr5D 250072906 250075888 2982 True 471.333333 761 82.114000 981 3790 3 chr5D.!!$R3 2809
5 TraesCS5B01G153800 chr5A 333439222 333442996 3774 True 1415.000000 2514 92.278250 877 4906 4 chr5A.!!$R3 4029
6 TraesCS5B01G153800 chr5A 333419634 333422078 2444 True 483.333333 830 83.279667 1208 3790 3 chr5A.!!$R2 2582
7 TraesCS5B01G153800 chr6B 583186893 583187452 559 True 780.000000 780 91.844000 114 673 1 chr6B.!!$R2 559
8 TraesCS5B01G153800 chr1B 647198874 647199447 573 True 776.000000 776 91.192000 114 685 1 chr1B.!!$R4 571
9 TraesCS5B01G153800 chr1B 231742891 231743452 561 False 767.000000 767 91.343000 114 675 1 chr1B.!!$F1 561
10 TraesCS5B01G153800 chr7B 361141120 361141680 560 True 760.000000 760 91.166000 114 675 1 chr7B.!!$R2 561
11 TraesCS5B01G153800 chr7B 242387004 242387565 561 False 750.000000 750 90.829000 114 675 1 chr7B.!!$F1 561
12 TraesCS5B01G153800 chr7B 87147935 87148499 564 True 320.000000 320 77.258000 2952 3548 1 chr7B.!!$R1 596
13 TraesCS5B01G153800 chr4B 89544004 89544565 561 False 756.000000 756 90.989000 114 675 1 chr4B.!!$F3 561
14 TraesCS5B01G153800 chr2B 336137472 336138033 561 True 756.000000 756 91.005000 114 675 1 chr2B.!!$R2 561
15 TraesCS5B01G153800 chr6D 405426724 405427286 562 False 745.000000 745 90.669000 114 675 1 chr6D.!!$F1 561
16 TraesCS5B01G153800 chr7A 127581186 127582002 816 True 503.000000 503 78.312000 2948 3784 1 chr7A.!!$R2 836
17 TraesCS5B01G153800 chr7D 126647369 126647958 589 True 494.000000 494 81.833000 2948 3546 1 chr7D.!!$R2 598
18 TraesCS5B01G153800 chr7D 126476956 126477519 563 True 329.000000 329 77.554000 2952 3548 1 chr7D.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
872 882 0.034896 TGGACCGAGGAAAGAGTTGC 59.965 55.0 0.00 0.00 0.00 4.17 F
1793 1859 0.322816 TGCTGAATTGGAGGGCTGAC 60.323 55.0 0.00 0.00 0.00 3.51 F
2723 3138 0.976641 CACAGCTGGGAACTAGACCA 59.023 55.0 19.93 0.83 35.05 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2763 3178 1.323271 TTCTGTGTTGGCCGCCAAAA 61.323 50.0 26.44 19.15 45.73 2.44 R
3362 3784 0.323633 TGTCATGCCATGGAACCCTG 60.324 55.0 18.40 0.00 0.00 4.45 R
3922 4449 0.184451 AGGTCATGGTGATGGATGGC 59.816 55.0 0.00 0.00 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.574674 TTCAAGGGTATGAAGATGCACT 57.425 40.909 0.00 0.00 34.50 4.40
28 29 4.142609 TCAAGGGTATGAAGATGCACTC 57.857 45.455 0.00 0.00 25.83 3.51
29 30 3.118261 TCAAGGGTATGAAGATGCACTCC 60.118 47.826 0.00 0.00 25.83 3.85
30 31 1.771255 AGGGTATGAAGATGCACTCCC 59.229 52.381 0.00 0.00 35.54 4.30
31 32 1.202818 GGGTATGAAGATGCACTCCCC 60.203 57.143 0.00 0.00 31.76 4.81
32 33 1.771255 GGTATGAAGATGCACTCCCCT 59.229 52.381 0.00 0.00 0.00 4.79
33 34 2.224402 GGTATGAAGATGCACTCCCCTC 60.224 54.545 0.00 0.00 0.00 4.30
34 35 1.890552 ATGAAGATGCACTCCCCTCT 58.109 50.000 0.00 0.00 0.00 3.69
35 36 1.198713 TGAAGATGCACTCCCCTCTC 58.801 55.000 0.00 0.00 0.00 3.20
36 37 1.273495 TGAAGATGCACTCCCCTCTCT 60.273 52.381 0.00 0.00 0.00 3.10
37 38 1.412343 GAAGATGCACTCCCCTCTCTC 59.588 57.143 0.00 0.00 0.00 3.20
38 39 0.636101 AGATGCACTCCCCTCTCTCT 59.364 55.000 0.00 0.00 0.00 3.10
39 40 1.039856 GATGCACTCCCCTCTCTCTC 58.960 60.000 0.00 0.00 0.00 3.20
40 41 0.754957 ATGCACTCCCCTCTCTCTCG 60.755 60.000 0.00 0.00 0.00 4.04
41 42 1.379309 GCACTCCCCTCTCTCTCGT 60.379 63.158 0.00 0.00 0.00 4.18
42 43 0.968393 GCACTCCCCTCTCTCTCGTT 60.968 60.000 0.00 0.00 0.00 3.85
43 44 0.814457 CACTCCCCTCTCTCTCGTTG 59.186 60.000 0.00 0.00 0.00 4.10
44 45 0.968393 ACTCCCCTCTCTCTCGTTGC 60.968 60.000 0.00 0.00 0.00 4.17
45 46 0.682855 CTCCCCTCTCTCTCGTTGCT 60.683 60.000 0.00 0.00 0.00 3.91
46 47 0.624254 TCCCCTCTCTCTCGTTGCTA 59.376 55.000 0.00 0.00 0.00 3.49
47 48 1.028905 CCCCTCTCTCTCGTTGCTAG 58.971 60.000 0.00 0.00 0.00 3.42
48 49 1.683629 CCCCTCTCTCTCGTTGCTAGT 60.684 57.143 0.00 0.00 0.00 2.57
49 50 2.096248 CCCTCTCTCTCGTTGCTAGTT 58.904 52.381 0.00 0.00 0.00 2.24
50 51 3.280295 CCCTCTCTCTCGTTGCTAGTTA 58.720 50.000 0.00 0.00 0.00 2.24
51 52 3.065648 CCCTCTCTCTCGTTGCTAGTTAC 59.934 52.174 0.00 0.00 0.00 2.50
52 53 3.942748 CCTCTCTCTCGTTGCTAGTTACT 59.057 47.826 0.00 0.00 0.00 2.24
53 54 4.396790 CCTCTCTCTCGTTGCTAGTTACTT 59.603 45.833 0.00 0.00 0.00 2.24
54 55 5.448089 CCTCTCTCTCGTTGCTAGTTACTTC 60.448 48.000 0.00 0.00 0.00 3.01
55 56 5.001874 TCTCTCTCGTTGCTAGTTACTTCA 58.998 41.667 0.00 0.00 0.00 3.02
56 57 5.648526 TCTCTCTCGTTGCTAGTTACTTCAT 59.351 40.000 0.00 0.00 0.00 2.57
57 58 6.822170 TCTCTCTCGTTGCTAGTTACTTCATA 59.178 38.462 0.00 0.00 0.00 2.15
58 59 7.499563 TCTCTCTCGTTGCTAGTTACTTCATAT 59.500 37.037 0.00 0.00 0.00 1.78
59 60 8.672823 TCTCTCGTTGCTAGTTACTTCATATA 57.327 34.615 0.00 0.00 0.00 0.86
60 61 9.286170 TCTCTCGTTGCTAGTTACTTCATATAT 57.714 33.333 0.00 0.00 0.00 0.86
61 62 9.900710 CTCTCGTTGCTAGTTACTTCATATATT 57.099 33.333 0.00 0.00 0.00 1.28
62 63 9.678941 TCTCGTTGCTAGTTACTTCATATATTG 57.321 33.333 0.00 0.00 0.00 1.90
63 64 9.678941 CTCGTTGCTAGTTACTTCATATATTGA 57.321 33.333 0.00 0.00 0.00 2.57
75 76 8.332996 ACTTCATATATTGATCTTGGTGATGC 57.667 34.615 0.00 0.00 35.14 3.91
76 77 6.973229 TCATATATTGATCTTGGTGATGCG 57.027 37.500 0.00 0.00 35.14 4.73
77 78 6.466812 TCATATATTGATCTTGGTGATGCGT 58.533 36.000 0.00 0.00 35.14 5.24
78 79 6.936335 TCATATATTGATCTTGGTGATGCGTT 59.064 34.615 0.00 0.00 35.14 4.84
79 80 3.770263 ATTGATCTTGGTGATGCGTTG 57.230 42.857 0.00 0.00 35.14 4.10
80 81 2.470983 TGATCTTGGTGATGCGTTGA 57.529 45.000 0.00 0.00 35.14 3.18
81 82 2.989909 TGATCTTGGTGATGCGTTGAT 58.010 42.857 0.00 0.00 35.14 2.57
82 83 3.346315 TGATCTTGGTGATGCGTTGATT 58.654 40.909 0.00 0.00 35.14 2.57
83 84 3.758023 TGATCTTGGTGATGCGTTGATTT 59.242 39.130 0.00 0.00 35.14 2.17
84 85 4.218200 TGATCTTGGTGATGCGTTGATTTT 59.782 37.500 0.00 0.00 35.14 1.82
85 86 4.582701 TCTTGGTGATGCGTTGATTTTT 57.417 36.364 0.00 0.00 0.00 1.94
107 108 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
108 109 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
109 110 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
110 111 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
111 112 1.886886 TTTCTGCTACGTTCCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
112 113 0.759959 TTCTGCTACGTTCCCCAACA 59.240 50.000 0.00 0.00 32.14 3.33
135 136 8.958119 ACAATTAGACACTCAACAAGTAAAGA 57.042 30.769 0.00 0.00 36.07 2.52
158 159 7.781056 AGATGGCAGTTTTTAAGTTCTTCAAA 58.219 30.769 0.00 0.00 0.00 2.69
195 196 5.275067 TGGCACAATATTAAGCATTTCCC 57.725 39.130 11.88 0.00 31.92 3.97
197 198 5.163426 TGGCACAATATTAAGCATTTCCCAG 60.163 40.000 11.88 0.00 31.92 4.45
217 218 1.001048 GCACACTTCAAGCAAGCATGA 60.001 47.619 0.00 0.00 35.17 3.07
295 298 6.386927 AGGGATGAGATTGGAGTGTGTAAATA 59.613 38.462 0.00 0.00 0.00 1.40
358 366 3.386402 TGGTGCTATCATCCACGTTGATA 59.614 43.478 1.23 5.16 35.50 2.15
434 442 1.712056 TGAAGGGTCCACGAAGAAGA 58.288 50.000 0.00 0.00 0.00 2.87
504 513 2.482142 CCTGGGTAGATCTTCACGAAGC 60.482 54.545 0.00 0.00 38.28 3.86
573 582 0.908198 GACAGAGGCTCCCAAGTGAT 59.092 55.000 11.71 0.00 0.00 3.06
589 599 6.326583 CCCAAGTGATACCTAACCAATCTAGA 59.673 42.308 0.00 0.00 0.00 2.43
624 634 6.214615 TCTCCAAAAGGTAATAGATGGTGTGA 59.785 38.462 0.00 0.00 0.00 3.58
638 648 4.556592 TGGTGTGATGATGATGAACTCA 57.443 40.909 0.00 0.00 38.53 3.41
675 685 5.715439 TCAAATGATAGTCTCCCCAACAT 57.285 39.130 0.00 0.00 0.00 2.71
676 686 5.684704 TCAAATGATAGTCTCCCCAACATC 58.315 41.667 0.00 0.00 0.00 3.06
677 687 4.713792 AATGATAGTCTCCCCAACATCC 57.286 45.455 0.00 0.00 0.00 3.51
678 688 3.421394 TGATAGTCTCCCCAACATCCT 57.579 47.619 0.00 0.00 0.00 3.24
679 689 3.309296 TGATAGTCTCCCCAACATCCTC 58.691 50.000 0.00 0.00 0.00 3.71
680 690 3.051803 TGATAGTCTCCCCAACATCCTCT 60.052 47.826 0.00 0.00 0.00 3.69
681 691 2.350863 AGTCTCCCCAACATCCTCTT 57.649 50.000 0.00 0.00 0.00 2.85
682 692 1.912043 AGTCTCCCCAACATCCTCTTG 59.088 52.381 0.00 0.00 0.00 3.02
683 693 1.630878 GTCTCCCCAACATCCTCTTGT 59.369 52.381 0.00 0.00 0.00 3.16
684 694 1.909302 TCTCCCCAACATCCTCTTGTC 59.091 52.381 0.00 0.00 0.00 3.18
685 695 0.991920 TCCCCAACATCCTCTTGTCC 59.008 55.000 0.00 0.00 0.00 4.02
686 696 0.995024 CCCCAACATCCTCTTGTCCT 59.005 55.000 0.00 0.00 0.00 3.85
687 697 1.340405 CCCCAACATCCTCTTGTCCTG 60.340 57.143 0.00 0.00 0.00 3.86
688 698 1.457346 CCAACATCCTCTTGTCCTGC 58.543 55.000 0.00 0.00 0.00 4.85
689 699 1.457346 CAACATCCTCTTGTCCTGCC 58.543 55.000 0.00 0.00 0.00 4.85
690 700 1.067295 AACATCCTCTTGTCCTGCCA 58.933 50.000 0.00 0.00 0.00 4.92
691 701 0.326264 ACATCCTCTTGTCCTGCCAC 59.674 55.000 0.00 0.00 0.00 5.01
692 702 0.617413 CATCCTCTTGTCCTGCCACT 59.383 55.000 0.00 0.00 0.00 4.00
693 703 1.004044 CATCCTCTTGTCCTGCCACTT 59.996 52.381 0.00 0.00 0.00 3.16
694 704 0.687354 TCCTCTTGTCCTGCCACTTC 59.313 55.000 0.00 0.00 0.00 3.01
695 705 0.397941 CCTCTTGTCCTGCCACTTCA 59.602 55.000 0.00 0.00 0.00 3.02
696 706 1.004044 CCTCTTGTCCTGCCACTTCAT 59.996 52.381 0.00 0.00 0.00 2.57
697 707 2.553904 CCTCTTGTCCTGCCACTTCATT 60.554 50.000 0.00 0.00 0.00 2.57
698 708 2.486982 CTCTTGTCCTGCCACTTCATTG 59.513 50.000 0.00 0.00 0.00 2.82
699 709 2.158623 TCTTGTCCTGCCACTTCATTGT 60.159 45.455 0.00 0.00 0.00 2.71
700 710 2.363306 TGTCCTGCCACTTCATTGTT 57.637 45.000 0.00 0.00 0.00 2.83
701 711 1.955778 TGTCCTGCCACTTCATTGTTG 59.044 47.619 0.00 0.00 0.00 3.33
702 712 2.229792 GTCCTGCCACTTCATTGTTGA 58.770 47.619 0.00 0.00 0.00 3.18
703 713 2.622942 GTCCTGCCACTTCATTGTTGAA 59.377 45.455 0.00 0.00 39.54 2.69
704 714 2.622942 TCCTGCCACTTCATTGTTGAAC 59.377 45.455 0.00 0.00 36.94 3.18
705 715 2.624838 CCTGCCACTTCATTGTTGAACT 59.375 45.455 0.00 0.00 36.94 3.01
706 716 3.068590 CCTGCCACTTCATTGTTGAACTT 59.931 43.478 0.00 0.00 36.94 2.66
707 717 4.278170 CCTGCCACTTCATTGTTGAACTTA 59.722 41.667 0.00 0.00 36.94 2.24
708 718 5.047802 CCTGCCACTTCATTGTTGAACTTAT 60.048 40.000 0.00 0.00 36.94 1.73
709 719 6.012658 TGCCACTTCATTGTTGAACTTATC 57.987 37.500 0.00 0.00 36.94 1.75
710 720 5.769662 TGCCACTTCATTGTTGAACTTATCT 59.230 36.000 0.00 0.00 36.94 1.98
711 721 6.939730 TGCCACTTCATTGTTGAACTTATCTA 59.060 34.615 0.00 0.00 36.94 1.98
712 722 7.446931 TGCCACTTCATTGTTGAACTTATCTAA 59.553 33.333 0.00 0.00 36.94 2.10
713 723 8.296713 GCCACTTCATTGTTGAACTTATCTAAA 58.703 33.333 0.00 0.00 36.94 1.85
803 813 6.833342 AAAAACACTTGTGCTTTCATCATC 57.167 33.333 0.10 0.00 0.00 2.92
804 814 5.779529 AAACACTTGTGCTTTCATCATCT 57.220 34.783 0.10 0.00 0.00 2.90
805 815 5.368256 AACACTTGTGCTTTCATCATCTC 57.632 39.130 0.10 0.00 0.00 2.75
806 816 4.649692 ACACTTGTGCTTTCATCATCTCT 58.350 39.130 0.10 0.00 0.00 3.10
807 817 4.694509 ACACTTGTGCTTTCATCATCTCTC 59.305 41.667 0.10 0.00 0.00 3.20
808 818 4.936411 CACTTGTGCTTTCATCATCTCTCT 59.064 41.667 0.00 0.00 0.00 3.10
809 819 5.411977 CACTTGTGCTTTCATCATCTCTCTT 59.588 40.000 0.00 0.00 0.00 2.85
810 820 6.002704 ACTTGTGCTTTCATCATCTCTCTTT 58.997 36.000 0.00 0.00 0.00 2.52
811 821 5.874895 TGTGCTTTCATCATCTCTCTTTG 57.125 39.130 0.00 0.00 0.00 2.77
812 822 5.311265 TGTGCTTTCATCATCTCTCTTTGT 58.689 37.500 0.00 0.00 0.00 2.83
813 823 5.410746 TGTGCTTTCATCATCTCTCTTTGTC 59.589 40.000 0.00 0.00 0.00 3.18
814 824 5.410746 GTGCTTTCATCATCTCTCTTTGTCA 59.589 40.000 0.00 0.00 0.00 3.58
815 825 6.093771 GTGCTTTCATCATCTCTCTTTGTCAT 59.906 38.462 0.00 0.00 0.00 3.06
816 826 6.315642 TGCTTTCATCATCTCTCTTTGTCATC 59.684 38.462 0.00 0.00 0.00 2.92
817 827 6.509837 GCTTTCATCATCTCTCTTTGTCATCG 60.510 42.308 0.00 0.00 0.00 3.84
818 828 4.366586 TCATCATCTCTCTTTGTCATCGC 58.633 43.478 0.00 0.00 0.00 4.58
819 829 4.099113 TCATCATCTCTCTTTGTCATCGCT 59.901 41.667 0.00 0.00 0.00 4.93
820 830 4.039151 TCATCTCTCTTTGTCATCGCTC 57.961 45.455 0.00 0.00 0.00 5.03
821 831 2.551355 TCTCTCTTTGTCATCGCTCG 57.449 50.000 0.00 0.00 0.00 5.03
822 832 1.133216 TCTCTCTTTGTCATCGCTCGG 59.867 52.381 0.00 0.00 0.00 4.63
823 833 1.133216 CTCTCTTTGTCATCGCTCGGA 59.867 52.381 0.00 0.00 0.00 4.55
824 834 1.133216 TCTCTTTGTCATCGCTCGGAG 59.867 52.381 0.00 0.00 0.00 4.63
825 835 0.888619 TCTTTGTCATCGCTCGGAGT 59.111 50.000 6.90 0.00 0.00 3.85
826 836 0.994995 CTTTGTCATCGCTCGGAGTG 59.005 55.000 12.29 12.29 0.00 3.51
827 837 0.601057 TTTGTCATCGCTCGGAGTGA 59.399 50.000 22.23 22.23 39.30 3.41
828 838 0.601057 TTGTCATCGCTCGGAGTGAA 59.399 50.000 23.57 7.08 38.36 3.18
829 839 0.171231 TGTCATCGCTCGGAGTGAAG 59.829 55.000 23.57 19.40 38.36 3.02
830 840 0.452184 GTCATCGCTCGGAGTGAAGA 59.548 55.000 23.57 21.26 38.36 2.87
831 841 1.135373 GTCATCGCTCGGAGTGAAGAA 60.135 52.381 23.25 11.14 38.36 2.52
832 842 1.544246 TCATCGCTCGGAGTGAAGAAA 59.456 47.619 23.57 8.10 38.36 2.52
833 843 1.656095 CATCGCTCGGAGTGAAGAAAC 59.344 52.381 23.57 0.00 38.36 2.78
834 844 0.671796 TCGCTCGGAGTGAAGAAACA 59.328 50.000 18.32 0.00 30.79 2.83
835 845 0.784778 CGCTCGGAGTGAAGAAACAC 59.215 55.000 13.19 0.00 40.60 3.32
847 857 6.119144 GTGAAGAAACACTAGAAACAAGCA 57.881 37.500 0.00 0.00 37.73 3.91
848 858 5.965918 GTGAAGAAACACTAGAAACAAGCAC 59.034 40.000 0.00 0.00 37.73 4.40
849 859 5.065988 TGAAGAAACACTAGAAACAAGCACC 59.934 40.000 0.00 0.00 0.00 5.01
850 860 4.523083 AGAAACACTAGAAACAAGCACCA 58.477 39.130 0.00 0.00 0.00 4.17
851 861 4.335594 AGAAACACTAGAAACAAGCACCAC 59.664 41.667 0.00 0.00 0.00 4.16
852 862 3.560636 ACACTAGAAACAAGCACCACT 57.439 42.857 0.00 0.00 0.00 4.00
853 863 3.886123 ACACTAGAAACAAGCACCACTT 58.114 40.909 0.00 0.00 40.05 3.16
860 870 3.236391 AAGCACCACTTGGACCGA 58.764 55.556 1.14 0.00 37.17 4.69
861 871 1.071471 AAGCACCACTTGGACCGAG 59.929 57.895 7.25 7.25 37.17 4.63
862 872 2.358737 GCACCACTTGGACCGAGG 60.359 66.667 13.62 0.00 38.94 4.63
863 873 2.879233 GCACCACTTGGACCGAGGA 61.879 63.158 13.62 0.00 38.94 3.71
864 874 1.752198 CACCACTTGGACCGAGGAA 59.248 57.895 13.62 0.00 38.94 3.36
865 875 0.107831 CACCACTTGGACCGAGGAAA 59.892 55.000 13.62 0.00 38.94 3.13
866 876 0.396811 ACCACTTGGACCGAGGAAAG 59.603 55.000 13.62 0.35 38.94 2.62
867 877 0.685097 CCACTTGGACCGAGGAAAGA 59.315 55.000 13.62 0.00 37.39 2.52
868 878 1.338200 CCACTTGGACCGAGGAAAGAG 60.338 57.143 13.62 0.00 37.39 2.85
869 879 1.344763 CACTTGGACCGAGGAAAGAGT 59.655 52.381 13.62 0.00 0.00 3.24
870 880 2.047830 ACTTGGACCGAGGAAAGAGTT 58.952 47.619 13.62 0.00 0.00 3.01
871 881 2.224305 ACTTGGACCGAGGAAAGAGTTG 60.224 50.000 13.62 0.00 0.00 3.16
872 882 0.034896 TGGACCGAGGAAAGAGTTGC 59.965 55.000 0.00 0.00 0.00 4.17
873 883 0.673956 GGACCGAGGAAAGAGTTGCC 60.674 60.000 0.00 0.00 0.00 4.52
874 884 1.004918 ACCGAGGAAAGAGTTGCCG 60.005 57.895 0.00 0.00 0.00 5.69
875 885 1.741770 CCGAGGAAAGAGTTGCCGG 60.742 63.158 0.00 0.00 34.47 6.13
895 905 2.554893 GGTTGCCGGTTGAAAATCAGTA 59.445 45.455 1.90 0.00 0.00 2.74
900 910 4.020928 TGCCGGTTGAAAATCAGTAGACTA 60.021 41.667 1.90 0.00 0.00 2.59
931 942 6.209361 AGCAAAAAGAAAGAAAATCGTCTCC 58.791 36.000 0.00 0.00 0.00 3.71
1133 1151 0.531532 ATCCAAGCATCTCTTCGCGG 60.532 55.000 6.13 0.00 31.27 6.46
1192 1246 2.824041 CCCCATTTCAGTCCGCCG 60.824 66.667 0.00 0.00 0.00 6.46
1461 1524 2.806745 CGTCTTCTTCAAGGGCTTGTCA 60.807 50.000 0.00 0.00 41.16 3.58
1740 1803 2.793933 TCTTTGCGTATCTAGTCGTGC 58.206 47.619 0.00 0.00 0.00 5.34
1793 1859 0.322816 TGCTGAATTGGAGGGCTGAC 60.323 55.000 0.00 0.00 0.00 3.51
1861 1938 2.194868 GTATTTGGAGGGCCGGGG 59.805 66.667 2.18 0.00 36.79 5.73
2005 2091 9.217278 TGTTAGTTTCAGTTTAATTGCGGTATA 57.783 29.630 0.00 0.00 0.00 1.47
2098 2184 8.462016 GGAGTTTAGATACAATGTTCAGCAAAT 58.538 33.333 0.00 0.00 0.00 2.32
2234 2434 3.871594 GCTGTACTGGCTTACTGTATTGG 59.128 47.826 1.65 0.00 36.17 3.16
2303 2555 2.121948 TGCTCCAGATTGCTAGTGGAT 58.878 47.619 0.00 0.00 39.66 3.41
2723 3138 0.976641 CACAGCTGGGAACTAGACCA 59.023 55.000 19.93 0.83 35.05 4.02
2763 3178 1.188863 GGGATTGCAGTTGCTTGGAT 58.811 50.000 5.62 0.00 42.66 3.41
3298 3720 5.049198 TGCAAGAATCTTGCTCAAAGTACAG 60.049 40.000 37.46 6.64 45.13 2.74
3621 4072 5.523552 TGTTAATCTGTACATCCTTCATGCG 59.476 40.000 0.00 0.00 35.65 4.73
3636 4148 1.164662 ATGCGCTGCTAATGCTCTGG 61.165 55.000 9.73 0.00 40.48 3.86
3642 4160 0.984961 TGCTAATGCTCTGGGCCTCT 60.985 55.000 4.53 0.00 40.92 3.69
3643 4161 0.182299 GCTAATGCTCTGGGCCTCTT 59.818 55.000 4.53 0.00 40.92 2.85
3644 4162 1.964552 CTAATGCTCTGGGCCTCTTG 58.035 55.000 4.53 0.00 40.92 3.02
3653 4177 2.708861 TCTGGGCCTCTTGTTTGTCTTA 59.291 45.455 4.53 0.00 0.00 2.10
3657 4181 3.219281 GGCCTCTTGTTTGTCTTAACCA 58.781 45.455 0.00 0.00 0.00 3.67
3692 4219 0.395586 TCTTGGTTGCTTGCAGGTGT 60.396 50.000 0.00 0.00 0.00 4.16
3722 4249 0.976641 TCTGCTACACCTGTGGGAAG 59.023 55.000 1.91 0.00 36.25 3.46
3733 4260 0.039618 TGTGGGAAGGAATGGAAGGC 59.960 55.000 0.00 0.00 0.00 4.35
3773 4300 4.301505 CCACTGTGGGATGAACGG 57.698 61.111 19.23 0.00 32.67 4.44
3826 4353 5.279607 ATGTTGTCCATGAAAACATTCAGGG 60.280 40.000 14.31 14.31 45.02 4.45
3841 4368 5.191323 ACATTCAGGGAGATGAAGATGAGTT 59.809 40.000 0.00 0.00 42.20 3.01
3875 4402 6.039493 ACGAGGACGATTACTATGTTCAAGAT 59.961 38.462 0.00 0.00 42.66 2.40
3913 4440 1.384222 GGGTTTCGGTGATGGATGGC 61.384 60.000 0.00 0.00 0.00 4.40
3923 4450 4.504596 TGGATGGCCCATCACCGC 62.505 66.667 24.59 8.29 42.13 5.68
3960 4487 6.406370 TGACCTGTTCTACCATTAACATCAG 58.594 40.000 0.00 0.00 35.21 2.90
4080 4610 4.990257 TGCTGTTAGTATGTAACCGACTC 58.010 43.478 0.00 0.00 0.00 3.36
4136 4668 4.142622 CGTTCTGTGGCACATGAATGTATT 60.143 41.667 26.51 0.00 44.52 1.89
4284 4817 2.826128 TGGCAGTAGTCACCTCTACAAG 59.174 50.000 6.63 1.03 41.68 3.16
4358 4891 9.069082 CCTACTGCTAACAATAGTACTGTAGAT 57.931 37.037 5.39 0.00 33.96 1.98
4418 4952 5.986004 AAAGATATTACTACAAGCCGTGC 57.014 39.130 0.00 0.00 0.00 5.34
4424 4958 1.604604 ACTACAAGCCGTGCAAACAT 58.395 45.000 0.00 0.00 0.00 2.71
4428 4962 0.040514 CAAGCCGTGCAAACATCGAA 60.041 50.000 0.00 0.00 0.00 3.71
4473 5007 5.947228 CAGAATGCTAGTCTTTCCACAAA 57.053 39.130 0.00 0.00 31.30 2.83
4474 5008 6.317789 CAGAATGCTAGTCTTTCCACAAAA 57.682 37.500 0.00 0.00 31.30 2.44
4475 5009 6.376978 CAGAATGCTAGTCTTTCCACAAAAG 58.623 40.000 0.00 0.00 44.89 2.27
4485 5019 5.912360 CTTTCCACAAAAGAAAATCAGCC 57.088 39.130 0.00 0.00 46.18 4.85
4486 5020 5.350504 TTTCCACAAAAGAAAATCAGCCA 57.649 34.783 0.00 0.00 30.48 4.75
4487 5021 5.350504 TTCCACAAAAGAAAATCAGCCAA 57.649 34.783 0.00 0.00 0.00 4.52
4488 5022 4.947645 TCCACAAAAGAAAATCAGCCAAG 58.052 39.130 0.00 0.00 0.00 3.61
4489 5023 4.648762 TCCACAAAAGAAAATCAGCCAAGA 59.351 37.500 0.00 0.00 0.00 3.02
4490 5024 5.128499 TCCACAAAAGAAAATCAGCCAAGAA 59.872 36.000 0.00 0.00 0.00 2.52
4491 5025 5.816777 CCACAAAAGAAAATCAGCCAAGAAA 59.183 36.000 0.00 0.00 0.00 2.52
4492 5026 6.018507 CCACAAAAGAAAATCAGCCAAGAAAG 60.019 38.462 0.00 0.00 0.00 2.62
4493 5027 6.757947 CACAAAAGAAAATCAGCCAAGAAAGA 59.242 34.615 0.00 0.00 0.00 2.52
4494 5028 7.278424 CACAAAAGAAAATCAGCCAAGAAAGAA 59.722 33.333 0.00 0.00 0.00 2.52
4495 5029 7.823799 ACAAAAGAAAATCAGCCAAGAAAGAAA 59.176 29.630 0.00 0.00 0.00 2.52
4496 5030 8.667463 CAAAAGAAAATCAGCCAAGAAAGAAAA 58.333 29.630 0.00 0.00 0.00 2.29
4497 5031 8.969260 AAAGAAAATCAGCCAAGAAAGAAAAT 57.031 26.923 0.00 0.00 0.00 1.82
4498 5032 8.969260 AAGAAAATCAGCCAAGAAAGAAAATT 57.031 26.923 0.00 0.00 0.00 1.82
4500 5034 9.481340 AGAAAATCAGCCAAGAAAGAAAATTAC 57.519 29.630 0.00 0.00 0.00 1.89
4501 5035 9.260002 GAAAATCAGCCAAGAAAGAAAATTACA 57.740 29.630 0.00 0.00 0.00 2.41
4502 5036 9.612066 AAAATCAGCCAAGAAAGAAAATTACAA 57.388 25.926 0.00 0.00 0.00 2.41
4503 5037 9.783081 AAATCAGCCAAGAAAGAAAATTACAAT 57.217 25.926 0.00 0.00 0.00 2.71
4504 5038 9.783081 AATCAGCCAAGAAAGAAAATTACAATT 57.217 25.926 0.00 0.00 0.00 2.32
4520 5054 9.462606 AAATTACAATTAAGACCGAAGAATCCT 57.537 29.630 0.00 0.00 0.00 3.24
4521 5055 8.664211 ATTACAATTAAGACCGAAGAATCCTC 57.336 34.615 0.00 0.00 0.00 3.71
4522 5056 6.301169 ACAATTAAGACCGAAGAATCCTCT 57.699 37.500 0.00 0.00 0.00 3.69
4523 5057 7.419711 ACAATTAAGACCGAAGAATCCTCTA 57.580 36.000 0.00 0.00 0.00 2.43
4524 5058 7.848128 ACAATTAAGACCGAAGAATCCTCTAA 58.152 34.615 0.00 0.00 0.00 2.10
4525 5059 8.319146 ACAATTAAGACCGAAGAATCCTCTAAA 58.681 33.333 0.00 0.00 0.00 1.85
4526 5060 8.604890 CAATTAAGACCGAAGAATCCTCTAAAC 58.395 37.037 0.00 0.00 0.00 2.01
4527 5061 4.739587 AGACCGAAGAATCCTCTAAACC 57.260 45.455 0.00 0.00 0.00 3.27
4528 5062 4.354662 AGACCGAAGAATCCTCTAAACCT 58.645 43.478 0.00 0.00 0.00 3.50
4529 5063 5.516984 AGACCGAAGAATCCTCTAAACCTA 58.483 41.667 0.00 0.00 0.00 3.08
4530 5064 5.956563 AGACCGAAGAATCCTCTAAACCTAA 59.043 40.000 0.00 0.00 0.00 2.69
4531 5065 6.439692 AGACCGAAGAATCCTCTAAACCTAAA 59.560 38.462 0.00 0.00 0.00 1.85
4532 5066 7.012661 ACCGAAGAATCCTCTAAACCTAAAA 57.987 36.000 0.00 0.00 0.00 1.52
4533 5067 7.455891 ACCGAAGAATCCTCTAAACCTAAAAA 58.544 34.615 0.00 0.00 0.00 1.94
4564 5098 6.355638 CAGAACGCTAGTCTTTACACAAAAG 58.644 40.000 0.00 0.00 45.13 2.27
4603 5137 9.118236 GAAAGAAAATTACAATCAAGACCGAAG 57.882 33.333 0.00 0.00 0.00 3.79
4621 5155 2.957491 AGAATCCTCTGAGCTTGACG 57.043 50.000 0.00 0.00 0.00 4.35
4644 5178 0.616679 ACGCCCTTTACCTGCCTCTA 60.617 55.000 0.00 0.00 0.00 2.43
4656 5190 3.997672 GCCTCTAGCACCACCATAG 57.002 57.895 0.00 0.00 42.97 2.23
4664 5198 1.300963 CACCACCATAGCAGCCACT 59.699 57.895 0.00 0.00 0.00 4.00
4699 5234 1.265454 ACGGATCACTTCCTCACCCC 61.265 60.000 0.00 0.00 42.99 4.95
4705 5240 2.286523 ACTTCCTCACCCCAGCTCG 61.287 63.158 0.00 0.00 0.00 5.03
4719 5254 2.109126 GCTCGAAGCGGCTCCATTT 61.109 57.895 1.45 0.00 0.00 2.32
4722 5257 0.740868 TCGAAGCGGCTCCATTTCTG 60.741 55.000 1.45 0.00 0.00 3.02
4726 5261 3.406764 GAAGCGGCTCCATTTCTGATAT 58.593 45.455 1.45 0.00 0.00 1.63
4731 5266 2.228343 GGCTCCATTTCTGATATGCAGC 59.772 50.000 13.56 13.56 44.52 5.25
4737 5272 3.788333 TTTCTGATATGCAGCTTTGCC 57.212 42.857 0.00 0.00 44.52 4.52
4744 5279 3.435186 GCAGCTTTGCCGACCTCC 61.435 66.667 0.00 0.00 0.00 4.30
4748 5283 1.302511 GCTTTGCCGACCTCCAAGA 60.303 57.895 0.00 0.00 0.00 3.02
4804 5339 7.617225 TCAGAAGGACACCTTTCGATATTTAA 58.383 34.615 4.51 0.00 44.82 1.52
4816 5351 7.432252 CCTTTCGATATTTAAGGTCAATGTTGC 59.568 37.037 4.89 0.00 34.93 4.17
4820 5355 7.335673 TCGATATTTAAGGTCAATGTTGCAGAA 59.664 33.333 0.00 0.00 0.00 3.02
4821 5356 7.641411 CGATATTTAAGGTCAATGTTGCAGAAG 59.359 37.037 0.00 0.00 0.00 2.85
4825 5360 4.574674 AGGTCAATGTTGCAGAAGGATA 57.425 40.909 0.00 0.00 0.00 2.59
4836 5371 5.378292 TGCAGAAGGATAGTGATATCGAC 57.622 43.478 0.00 0.00 0.00 4.20
4837 5372 4.083271 TGCAGAAGGATAGTGATATCGACG 60.083 45.833 0.00 0.00 0.00 5.12
4883 5418 1.996786 TACAGGACGGCGATTCGACC 61.997 60.000 16.62 9.63 43.27 4.79
4899 5434 2.496871 TCGACCCGTAATGTTGTATGGT 59.503 45.455 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.517285 GAGTGCATCTTCATACCCTTGAA 58.483 43.478 0.00 0.00 34.55 2.69
8 9 3.209410 GGAGTGCATCTTCATACCCTTG 58.791 50.000 0.00 0.00 0.00 3.61
9 10 2.173569 GGGAGTGCATCTTCATACCCTT 59.826 50.000 0.00 0.00 34.08 3.95
10 11 1.771255 GGGAGTGCATCTTCATACCCT 59.229 52.381 0.00 0.00 34.08 4.34
11 12 1.202818 GGGGAGTGCATCTTCATACCC 60.203 57.143 0.00 0.00 35.21 3.69
13 14 2.703007 AGAGGGGAGTGCATCTTCATAC 59.297 50.000 0.00 0.00 0.00 2.39
14 15 2.968574 GAGAGGGGAGTGCATCTTCATA 59.031 50.000 0.00 0.00 0.00 2.15
15 16 1.767681 GAGAGGGGAGTGCATCTTCAT 59.232 52.381 0.00 0.00 0.00 2.57
16 17 1.198713 GAGAGGGGAGTGCATCTTCA 58.801 55.000 0.00 0.00 0.00 3.02
17 18 1.412343 GAGAGAGGGGAGTGCATCTTC 59.588 57.143 0.00 0.00 0.00 2.87
18 19 1.008206 AGAGAGAGGGGAGTGCATCTT 59.992 52.381 0.00 0.00 0.00 2.40
19 20 0.636101 AGAGAGAGGGGAGTGCATCT 59.364 55.000 0.00 0.00 0.00 2.90
20 21 1.039856 GAGAGAGAGGGGAGTGCATC 58.960 60.000 0.00 0.00 0.00 3.91
21 22 0.754957 CGAGAGAGAGGGGAGTGCAT 60.755 60.000 0.00 0.00 0.00 3.96
22 23 1.379176 CGAGAGAGAGGGGAGTGCA 60.379 63.158 0.00 0.00 0.00 4.57
23 24 0.968393 AACGAGAGAGAGGGGAGTGC 60.968 60.000 0.00 0.00 0.00 4.40
24 25 0.814457 CAACGAGAGAGAGGGGAGTG 59.186 60.000 0.00 0.00 0.00 3.51
25 26 0.968393 GCAACGAGAGAGAGGGGAGT 60.968 60.000 0.00 0.00 0.00 3.85
26 27 0.682855 AGCAACGAGAGAGAGGGGAG 60.683 60.000 0.00 0.00 0.00 4.30
27 28 0.624254 TAGCAACGAGAGAGAGGGGA 59.376 55.000 0.00 0.00 0.00 4.81
28 29 1.028905 CTAGCAACGAGAGAGAGGGG 58.971 60.000 0.00 0.00 0.00 4.79
29 30 1.757682 ACTAGCAACGAGAGAGAGGG 58.242 55.000 0.00 0.00 0.00 4.30
30 31 3.942748 AGTAACTAGCAACGAGAGAGAGG 59.057 47.826 0.00 0.00 0.00 3.69
31 32 5.122554 TGAAGTAACTAGCAACGAGAGAGAG 59.877 44.000 0.00 0.00 0.00 3.20
32 33 5.001874 TGAAGTAACTAGCAACGAGAGAGA 58.998 41.667 0.00 0.00 0.00 3.10
33 34 5.298197 TGAAGTAACTAGCAACGAGAGAG 57.702 43.478 0.00 0.00 0.00 3.20
34 35 5.899120 ATGAAGTAACTAGCAACGAGAGA 57.101 39.130 0.00 0.00 0.00 3.10
35 36 9.900710 AATATATGAAGTAACTAGCAACGAGAG 57.099 33.333 0.00 0.00 0.00 3.20
36 37 9.678941 CAATATATGAAGTAACTAGCAACGAGA 57.321 33.333 0.00 0.00 0.00 4.04
37 38 9.678941 TCAATATATGAAGTAACTAGCAACGAG 57.321 33.333 0.00 0.00 34.30 4.18
49 50 9.440773 GCATCACCAAGATCAATATATGAAGTA 57.559 33.333 0.00 0.00 42.54 2.24
50 51 7.118825 CGCATCACCAAGATCAATATATGAAGT 59.881 37.037 0.00 0.00 42.54 3.01
51 52 7.118825 ACGCATCACCAAGATCAATATATGAAG 59.881 37.037 0.00 0.00 42.54 3.02
52 53 6.936335 ACGCATCACCAAGATCAATATATGAA 59.064 34.615 0.00 0.00 42.54 2.57
53 54 6.466812 ACGCATCACCAAGATCAATATATGA 58.533 36.000 0.00 0.00 43.67 2.15
54 55 6.732531 ACGCATCACCAAGATCAATATATG 57.267 37.500 0.00 0.00 33.72 1.78
55 56 6.936335 TCAACGCATCACCAAGATCAATATAT 59.064 34.615 0.00 0.00 33.72 0.86
56 57 6.287525 TCAACGCATCACCAAGATCAATATA 58.712 36.000 0.00 0.00 33.72 0.86
57 58 5.125356 TCAACGCATCACCAAGATCAATAT 58.875 37.500 0.00 0.00 33.72 1.28
58 59 4.512484 TCAACGCATCACCAAGATCAATA 58.488 39.130 0.00 0.00 33.72 1.90
59 60 3.346315 TCAACGCATCACCAAGATCAAT 58.654 40.909 0.00 0.00 33.72 2.57
60 61 2.777094 TCAACGCATCACCAAGATCAA 58.223 42.857 0.00 0.00 33.72 2.57
61 62 2.470983 TCAACGCATCACCAAGATCA 57.529 45.000 0.00 0.00 33.72 2.92
62 63 4.361451 AAATCAACGCATCACCAAGATC 57.639 40.909 0.00 0.00 33.72 2.75
63 64 4.789012 AAAATCAACGCATCACCAAGAT 57.211 36.364 0.00 0.00 37.48 2.40
64 65 4.582701 AAAAATCAACGCATCACCAAGA 57.417 36.364 0.00 0.00 0.00 3.02
84 85 5.508320 GGGGAACGTAGCAGAAATTCAAAAA 60.508 40.000 0.00 0.00 0.00 1.94
85 86 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
86 87 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
87 88 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
88 89 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
89 90 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
90 91 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
91 92 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
92 93 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
93 94 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
94 95 0.759959 TTGTTGGGGAACGTAGCAGA 59.240 50.000 0.00 0.00 0.00 4.26
95 96 1.821216 ATTGTTGGGGAACGTAGCAG 58.179 50.000 0.00 0.00 0.00 4.24
96 97 2.279935 AATTGTTGGGGAACGTAGCA 57.720 45.000 0.00 0.00 0.00 3.49
97 98 3.373130 GTCTAATTGTTGGGGAACGTAGC 59.627 47.826 0.00 0.00 0.00 3.58
98 99 4.390909 GTGTCTAATTGTTGGGGAACGTAG 59.609 45.833 0.00 0.00 0.00 3.51
99 100 4.040706 AGTGTCTAATTGTTGGGGAACGTA 59.959 41.667 0.00 0.00 0.00 3.57
100 101 3.143728 GTGTCTAATTGTTGGGGAACGT 58.856 45.455 0.00 0.00 0.00 3.99
101 102 3.408634 AGTGTCTAATTGTTGGGGAACG 58.591 45.455 0.00 0.00 0.00 3.95
102 103 4.394729 TGAGTGTCTAATTGTTGGGGAAC 58.605 43.478 0.00 0.00 0.00 3.62
103 104 4.715534 TGAGTGTCTAATTGTTGGGGAA 57.284 40.909 0.00 0.00 0.00 3.97
104 105 4.141367 TGTTGAGTGTCTAATTGTTGGGGA 60.141 41.667 0.00 0.00 0.00 4.81
105 106 4.141287 TGTTGAGTGTCTAATTGTTGGGG 58.859 43.478 0.00 0.00 0.00 4.96
106 107 5.299279 ACTTGTTGAGTGTCTAATTGTTGGG 59.701 40.000 0.00 0.00 37.17 4.12
107 108 6.377327 ACTTGTTGAGTGTCTAATTGTTGG 57.623 37.500 0.00 0.00 37.17 3.77
108 109 9.438291 CTTTACTTGTTGAGTGTCTAATTGTTG 57.562 33.333 0.00 0.00 39.48 3.33
109 110 9.391006 TCTTTACTTGTTGAGTGTCTAATTGTT 57.609 29.630 0.00 0.00 39.48 2.83
110 111 8.958119 TCTTTACTTGTTGAGTGTCTAATTGT 57.042 30.769 0.00 0.00 39.48 2.71
111 112 9.817365 CATCTTTACTTGTTGAGTGTCTAATTG 57.183 33.333 0.00 0.00 39.48 2.32
112 113 9.003658 CCATCTTTACTTGTTGAGTGTCTAATT 57.996 33.333 0.00 0.00 39.48 1.40
135 136 8.962884 AATTTGAAGAACTTAAAAACTGCCAT 57.037 26.923 1.83 0.00 0.00 4.40
158 159 8.766994 ATATTGTGCCAATCTACAACCTTAAT 57.233 30.769 4.01 0.00 39.36 1.40
174 175 5.275067 TGGGAAATGCTTAATATTGTGCC 57.725 39.130 0.00 0.00 0.00 5.01
182 183 3.434309 AGTGTGCTGGGAAATGCTTAAT 58.566 40.909 0.00 0.00 0.00 1.40
195 196 0.382873 TGCTTGCTTGAAGTGTGCTG 59.617 50.000 0.00 0.00 33.73 4.41
197 198 1.001048 TCATGCTTGCTTGAAGTGTGC 60.001 47.619 8.43 0.00 33.73 4.57
217 218 3.887621 TTCCGCTGCTTATACTCTTGT 57.112 42.857 0.00 0.00 0.00 3.16
263 266 5.819901 CACTCCAATCTCATCCCTTTACTTC 59.180 44.000 0.00 0.00 0.00 3.01
295 298 6.208644 CAAAAATCTCCGTGTCTTCAATTGT 58.791 36.000 5.13 0.00 0.00 2.71
358 366 1.344763 CCTTCGTGGGTTGAAGTCTCT 59.655 52.381 2.47 0.00 40.96 3.10
412 420 1.639722 TCTTCGTGGACCCTTCATGA 58.360 50.000 0.00 0.00 0.00 3.07
434 442 3.309121 CCATGGTGGGATAGACAAGGTTT 60.309 47.826 2.57 0.00 32.67 3.27
484 492 2.166459 TGCTTCGTGAAGATCTACCCAG 59.834 50.000 13.60 0.00 40.79 4.45
504 513 0.539051 AAGGGCAAGGAGATCGTCTG 59.461 55.000 0.00 0.00 0.00 3.51
573 582 6.154021 GTGGTGTCTTCTAGATTGGTTAGGTA 59.846 42.308 0.00 0.00 0.00 3.08
589 599 2.509964 ACCTTTTGGAGAGTGGTGTCTT 59.490 45.455 0.00 0.00 44.07 3.01
638 648 5.204409 TCATTTGAAGCACAAGAGCAAAT 57.796 34.783 0.00 0.00 39.09 2.32
639 649 4.652421 TCATTTGAAGCACAAGAGCAAA 57.348 36.364 0.00 0.00 39.77 3.68
675 685 0.687354 GAAGTGGCAGGACAAGAGGA 59.313 55.000 0.00 0.00 0.00 3.71
676 686 0.397941 TGAAGTGGCAGGACAAGAGG 59.602 55.000 0.00 0.00 0.00 3.69
677 687 2.486472 ATGAAGTGGCAGGACAAGAG 57.514 50.000 0.00 0.00 0.00 2.85
678 688 2.158623 ACAATGAAGTGGCAGGACAAGA 60.159 45.455 0.00 0.00 0.00 3.02
679 689 2.233271 ACAATGAAGTGGCAGGACAAG 58.767 47.619 0.00 0.00 0.00 3.16
680 690 2.361757 CAACAATGAAGTGGCAGGACAA 59.638 45.455 0.00 0.00 0.00 3.18
681 691 1.955778 CAACAATGAAGTGGCAGGACA 59.044 47.619 0.00 0.00 0.00 4.02
682 692 2.229792 TCAACAATGAAGTGGCAGGAC 58.770 47.619 0.00 0.00 30.99 3.85
683 693 2.622942 GTTCAACAATGAAGTGGCAGGA 59.377 45.455 0.00 0.00 45.88 3.86
684 694 2.624838 AGTTCAACAATGAAGTGGCAGG 59.375 45.455 0.00 0.00 45.88 4.85
685 695 3.996150 AGTTCAACAATGAAGTGGCAG 57.004 42.857 0.00 0.00 45.88 4.85
686 696 5.769662 AGATAAGTTCAACAATGAAGTGGCA 59.230 36.000 0.03 0.00 46.18 4.92
687 697 6.259550 AGATAAGTTCAACAATGAAGTGGC 57.740 37.500 0.03 0.00 46.18 5.01
780 790 6.576185 AGATGATGAAAGCACAAGTGTTTTT 58.424 32.000 14.65 9.61 42.61 1.94
781 791 6.040166 AGAGATGATGAAAGCACAAGTGTTTT 59.960 34.615 13.63 13.63 44.66 2.43
782 792 5.533903 AGAGATGATGAAAGCACAAGTGTTT 59.466 36.000 1.79 0.00 30.93 2.83
783 793 5.068636 AGAGATGATGAAAGCACAAGTGTT 58.931 37.500 1.79 0.00 30.93 3.32
784 794 4.649692 AGAGATGATGAAAGCACAAGTGT 58.350 39.130 1.79 0.00 30.93 3.55
785 795 4.936411 AGAGAGATGATGAAAGCACAAGTG 59.064 41.667 0.00 0.00 30.93 3.16
786 796 5.163281 AGAGAGATGATGAAAGCACAAGT 57.837 39.130 0.00 0.00 30.93 3.16
787 797 6.072618 ACAAAGAGAGATGATGAAAGCACAAG 60.073 38.462 0.00 0.00 30.93 3.16
788 798 5.766670 ACAAAGAGAGATGATGAAAGCACAA 59.233 36.000 0.00 0.00 30.93 3.33
789 799 5.311265 ACAAAGAGAGATGATGAAAGCACA 58.689 37.500 0.00 0.00 30.93 4.57
790 800 5.410746 TGACAAAGAGAGATGATGAAAGCAC 59.589 40.000 0.00 0.00 30.93 4.40
791 801 5.554070 TGACAAAGAGAGATGATGAAAGCA 58.446 37.500 0.00 0.00 35.55 3.91
792 802 6.509837 CGATGACAAAGAGAGATGATGAAAGC 60.510 42.308 0.00 0.00 0.00 3.51
793 803 6.509837 GCGATGACAAAGAGAGATGATGAAAG 60.510 42.308 0.00 0.00 0.00 2.62
794 804 5.292834 GCGATGACAAAGAGAGATGATGAAA 59.707 40.000 0.00 0.00 0.00 2.69
795 805 4.807834 GCGATGACAAAGAGAGATGATGAA 59.192 41.667 0.00 0.00 0.00 2.57
796 806 4.099113 AGCGATGACAAAGAGAGATGATGA 59.901 41.667 0.00 0.00 0.00 2.92
797 807 4.370049 AGCGATGACAAAGAGAGATGATG 58.630 43.478 0.00 0.00 0.00 3.07
798 808 4.619973 GAGCGATGACAAAGAGAGATGAT 58.380 43.478 0.00 0.00 0.00 2.45
799 809 3.488216 CGAGCGATGACAAAGAGAGATGA 60.488 47.826 0.00 0.00 0.00 2.92
800 810 2.788233 CGAGCGATGACAAAGAGAGATG 59.212 50.000 0.00 0.00 0.00 2.90
801 811 2.223688 CCGAGCGATGACAAAGAGAGAT 60.224 50.000 0.00 0.00 0.00 2.75
802 812 1.133216 CCGAGCGATGACAAAGAGAGA 59.867 52.381 0.00 0.00 0.00 3.10
803 813 1.133216 TCCGAGCGATGACAAAGAGAG 59.867 52.381 0.00 0.00 0.00 3.20
804 814 1.133216 CTCCGAGCGATGACAAAGAGA 59.867 52.381 0.00 0.00 0.00 3.10
805 815 1.135257 ACTCCGAGCGATGACAAAGAG 60.135 52.381 0.00 0.00 0.00 2.85
806 816 0.888619 ACTCCGAGCGATGACAAAGA 59.111 50.000 0.00 0.00 0.00 2.52
807 817 0.994995 CACTCCGAGCGATGACAAAG 59.005 55.000 0.00 0.00 0.00 2.77
808 818 0.601057 TCACTCCGAGCGATGACAAA 59.399 50.000 0.00 0.00 0.00 2.83
809 819 0.601057 TTCACTCCGAGCGATGACAA 59.399 50.000 0.00 0.00 0.00 3.18
810 820 0.171231 CTTCACTCCGAGCGATGACA 59.829 55.000 0.00 0.00 0.00 3.58
811 821 0.452184 TCTTCACTCCGAGCGATGAC 59.548 55.000 0.00 0.00 0.00 3.06
812 822 1.173913 TTCTTCACTCCGAGCGATGA 58.826 50.000 0.00 0.00 0.00 2.92
813 823 1.656095 GTTTCTTCACTCCGAGCGATG 59.344 52.381 0.00 0.00 0.00 3.84
814 824 1.272490 TGTTTCTTCACTCCGAGCGAT 59.728 47.619 0.00 0.00 0.00 4.58
815 825 0.671796 TGTTTCTTCACTCCGAGCGA 59.328 50.000 0.00 0.00 0.00 4.93
816 826 0.784778 GTGTTTCTTCACTCCGAGCG 59.215 55.000 0.00 0.00 35.68 5.03
817 827 2.156343 AGTGTTTCTTCACTCCGAGC 57.844 50.000 0.00 0.00 44.07 5.03
818 828 4.768130 TCTAGTGTTTCTTCACTCCGAG 57.232 45.455 2.59 0.00 45.79 4.63
819 829 5.163488 TGTTTCTAGTGTTTCTTCACTCCGA 60.163 40.000 2.59 0.00 45.79 4.55
820 830 5.047847 TGTTTCTAGTGTTTCTTCACTCCG 58.952 41.667 2.59 0.00 45.79 4.63
821 831 6.511929 GCTTGTTTCTAGTGTTTCTTCACTCC 60.512 42.308 2.59 0.00 45.79 3.85
822 832 6.037172 TGCTTGTTTCTAGTGTTTCTTCACTC 59.963 38.462 2.59 0.00 45.79 3.51
824 834 5.965918 GTGCTTGTTTCTAGTGTTTCTTCAC 59.034 40.000 0.00 0.00 38.46 3.18
825 835 5.065988 GGTGCTTGTTTCTAGTGTTTCTTCA 59.934 40.000 0.00 0.00 0.00 3.02
826 836 5.065988 TGGTGCTTGTTTCTAGTGTTTCTTC 59.934 40.000 0.00 0.00 0.00 2.87
827 837 4.947388 TGGTGCTTGTTTCTAGTGTTTCTT 59.053 37.500 0.00 0.00 0.00 2.52
828 838 4.335594 GTGGTGCTTGTTTCTAGTGTTTCT 59.664 41.667 0.00 0.00 0.00 2.52
829 839 4.335594 AGTGGTGCTTGTTTCTAGTGTTTC 59.664 41.667 0.00 0.00 0.00 2.78
830 840 4.270008 AGTGGTGCTTGTTTCTAGTGTTT 58.730 39.130 0.00 0.00 0.00 2.83
831 841 3.886123 AGTGGTGCTTGTTTCTAGTGTT 58.114 40.909 0.00 0.00 0.00 3.32
832 842 3.560636 AGTGGTGCTTGTTTCTAGTGT 57.439 42.857 0.00 0.00 0.00 3.55
843 853 1.071471 CTCGGTCCAAGTGGTGCTT 59.929 57.895 0.00 0.00 38.08 3.91
844 854 2.743718 CTCGGTCCAAGTGGTGCT 59.256 61.111 0.00 0.00 36.34 4.40
845 855 2.358737 CCTCGGTCCAAGTGGTGC 60.359 66.667 0.00 0.00 36.34 5.01
846 856 0.107831 TTTCCTCGGTCCAAGTGGTG 59.892 55.000 0.00 0.00 36.34 4.17
847 857 0.396811 CTTTCCTCGGTCCAAGTGGT 59.603 55.000 0.00 0.00 36.34 4.16
848 858 0.685097 TCTTTCCTCGGTCCAAGTGG 59.315 55.000 0.00 0.00 0.00 4.00
849 859 1.344763 ACTCTTTCCTCGGTCCAAGTG 59.655 52.381 0.00 0.00 0.00 3.16
850 860 1.718280 ACTCTTTCCTCGGTCCAAGT 58.282 50.000 0.00 0.00 0.00 3.16
851 861 2.417719 CAACTCTTTCCTCGGTCCAAG 58.582 52.381 0.00 0.00 0.00 3.61
852 862 1.542547 GCAACTCTTTCCTCGGTCCAA 60.543 52.381 0.00 0.00 0.00 3.53
853 863 0.034896 GCAACTCTTTCCTCGGTCCA 59.965 55.000 0.00 0.00 0.00 4.02
854 864 0.673956 GGCAACTCTTTCCTCGGTCC 60.674 60.000 0.00 0.00 0.00 4.46
855 865 1.014564 CGGCAACTCTTTCCTCGGTC 61.015 60.000 0.00 0.00 0.00 4.79
856 866 1.004918 CGGCAACTCTTTCCTCGGT 60.005 57.895 0.00 0.00 0.00 4.69
857 867 1.741770 CCGGCAACTCTTTCCTCGG 60.742 63.158 0.00 0.00 0.00 4.63
858 868 0.602905 AACCGGCAACTCTTTCCTCG 60.603 55.000 0.00 0.00 0.00 4.63
859 869 0.875059 CAACCGGCAACTCTTTCCTC 59.125 55.000 0.00 0.00 0.00 3.71
860 870 1.172812 GCAACCGGCAACTCTTTCCT 61.173 55.000 0.00 0.00 43.97 3.36
861 871 1.285950 GCAACCGGCAACTCTTTCC 59.714 57.895 0.00 0.00 43.97 3.13
862 872 4.944249 GCAACCGGCAACTCTTTC 57.056 55.556 0.00 0.00 43.97 2.62
874 884 1.339929 ACTGATTTTCAACCGGCAACC 59.660 47.619 0.00 0.00 0.00 3.77
875 885 2.793278 ACTGATTTTCAACCGGCAAC 57.207 45.000 0.00 0.00 0.00 4.17
931 942 0.040067 GGGTTTGCTGAGAAGCGTTG 60.040 55.000 0.00 0.00 37.69 4.10
1077 1095 0.038526 GTTGGAAGGCGAAGTCGAGA 60.039 55.000 4.59 0.00 43.02 4.04
1133 1151 0.984995 AGAGGAGGGGTTACTGTTGC 59.015 55.000 0.00 0.00 0.00 4.17
1362 1425 2.176364 CCATTGGTCCTCTGGAATGGAT 59.824 50.000 11.01 0.00 38.98 3.41
1432 1495 2.611518 CTTGAAGAAGACGCGGAAGAT 58.388 47.619 12.47 0.00 0.00 2.40
1461 1524 3.914713 CCCACCACCCCCTTGCTT 61.915 66.667 0.00 0.00 0.00 3.91
1838 1915 2.561569 CGGCCCTCCAAATACACTAAG 58.438 52.381 0.00 0.00 0.00 2.18
1861 1938 5.510349 TATCTACTGATCTGCTCATGCAACC 60.510 44.000 0.00 0.00 40.16 3.77
2013 2099 9.852784 TCCCCTCCTCTTACATGATAATAAATA 57.147 33.333 0.00 0.00 0.00 1.40
2098 2184 7.603180 ACATAATACATCTAGAAGTCCAGCA 57.397 36.000 3.43 0.00 0.00 4.41
2234 2434 3.418684 TTGTACTCCTGCTTTTCCTCC 57.581 47.619 0.00 0.00 0.00 4.30
2303 2555 5.759059 AGAGGACCATTGATGCAGAAAATA 58.241 37.500 0.00 0.00 0.00 1.40
2628 3041 9.367444 CTTAACCATCGAATTTAGACTTACTGT 57.633 33.333 0.00 0.00 0.00 3.55
2763 3178 1.323271 TTCTGTGTTGGCCGCCAAAA 61.323 50.000 26.44 19.15 45.73 2.44
3298 3720 0.953727 TGTGGCAGAATCAGCAACAC 59.046 50.000 3.59 2.32 40.82 3.32
3362 3784 0.323633 TGTCATGCCATGGAACCCTG 60.324 55.000 18.40 0.00 0.00 4.45
3621 4072 2.192187 GGCCCAGAGCATTAGCAGC 61.192 63.158 0.00 0.00 46.50 5.25
3636 4148 3.219281 TGGTTAAGACAAACAAGAGGCC 58.781 45.455 0.00 0.00 0.00 5.19
3642 4160 6.577103 TGCATGAAATGGTTAAGACAAACAA 58.423 32.000 0.00 0.00 46.86 2.83
3643 4161 6.154203 TGCATGAAATGGTTAAGACAAACA 57.846 33.333 0.00 0.00 46.86 2.83
3644 4162 7.092716 AGATGCATGAAATGGTTAAGACAAAC 58.907 34.615 2.46 0.00 46.86 2.93
3653 4177 5.733620 AGAACAAGATGCATGAAATGGTT 57.266 34.783 2.46 0.00 46.86 3.67
3657 4181 5.733620 ACCAAGAACAAGATGCATGAAAT 57.266 34.783 2.46 0.00 0.00 2.17
3692 4219 3.455910 AGGTGTAGCAGAATTCATAGCCA 59.544 43.478 8.44 1.07 0.00 4.75
3722 4249 1.550524 GGTTTCTTGGCCTTCCATTCC 59.449 52.381 3.32 0.00 43.05 3.01
3733 4260 0.955919 GGAGCAGGTCGGTTTCTTGG 60.956 60.000 0.00 0.00 0.00 3.61
3758 4285 1.909302 AGATTCCGTTCATCCCACAGT 59.091 47.619 0.00 0.00 0.00 3.55
3773 4300 7.499232 CCCCCAATATCATTACGGATTAGATTC 59.501 40.741 0.00 0.00 0.00 2.52
3795 4322 0.614415 TCATGGACAACATTGCCCCC 60.614 55.000 0.00 0.00 37.84 5.40
3811 4338 6.487828 TCTTCATCTCCCTGAATGTTTTCAT 58.512 36.000 0.00 0.00 40.95 2.57
3826 4353 6.363088 GTCATCATCGAACTCATCTTCATCTC 59.637 42.308 0.00 0.00 0.00 2.75
3841 4368 1.594331 ATCGTCCTCGTCATCATCGA 58.406 50.000 0.00 0.00 38.33 3.59
3875 4402 1.837439 CCCTGGTTATAGTGAGCACCA 59.163 52.381 0.00 0.00 36.94 4.17
3913 4440 1.601759 GATGGATGGCGGTGATGGG 60.602 63.158 0.00 0.00 0.00 4.00
3916 4443 1.149174 GGTGATGGATGGCGGTGAT 59.851 57.895 0.00 0.00 0.00 3.06
3917 4444 1.634865 ATGGTGATGGATGGCGGTGA 61.635 55.000 0.00 0.00 0.00 4.02
3918 4445 1.152902 ATGGTGATGGATGGCGGTG 60.153 57.895 0.00 0.00 0.00 4.94
3919 4446 1.152902 CATGGTGATGGATGGCGGT 60.153 57.895 0.00 0.00 0.00 5.68
3920 4447 1.148949 TCATGGTGATGGATGGCGG 59.851 57.895 0.00 0.00 0.00 6.13
3921 4448 1.168407 GGTCATGGTGATGGATGGCG 61.168 60.000 0.00 0.00 0.00 5.69
3922 4449 0.184451 AGGTCATGGTGATGGATGGC 59.816 55.000 0.00 0.00 0.00 4.40
3923 4450 1.213678 ACAGGTCATGGTGATGGATGG 59.786 52.381 0.00 0.00 0.00 3.51
3924 4451 2.723322 ACAGGTCATGGTGATGGATG 57.277 50.000 0.00 0.00 0.00 3.51
3925 4452 2.848694 AGAACAGGTCATGGTGATGGAT 59.151 45.455 0.00 0.00 0.00 3.41
3926 4453 2.269023 AGAACAGGTCATGGTGATGGA 58.731 47.619 0.00 0.00 0.00 3.41
3927 4454 2.795231 AGAACAGGTCATGGTGATGG 57.205 50.000 0.00 0.00 0.00 3.51
3928 4455 3.055167 TGGTAGAACAGGTCATGGTGATG 60.055 47.826 0.00 0.00 0.00 3.07
3960 4487 1.804748 GAATTCTGGACCGTGGACAAC 59.195 52.381 0.00 0.00 0.00 3.32
4080 4610 4.937620 ACCCATACGATAGCAAGCAATATG 59.062 41.667 0.00 0.00 42.67 1.78
4284 4817 9.807649 AAAAATATGATCAAACAATGCTACCTC 57.192 29.630 0.00 0.00 0.00 3.85
4402 4936 3.142951 TGTTTGCACGGCTTGTAGTAAT 58.857 40.909 0.00 0.00 0.00 1.89
4405 4939 1.535462 GATGTTTGCACGGCTTGTAGT 59.465 47.619 0.00 0.00 0.00 2.73
4406 4940 1.464023 CGATGTTTGCACGGCTTGTAG 60.464 52.381 0.00 0.00 0.00 2.74
4412 4946 0.725784 CAGTTCGATGTTTGCACGGC 60.726 55.000 0.00 0.00 0.00 5.68
4415 4949 3.332761 TTGTCAGTTCGATGTTTGCAC 57.667 42.857 0.00 0.00 0.00 4.57
4418 4952 4.552166 AGGTTTGTCAGTTCGATGTTTG 57.448 40.909 0.00 0.00 0.00 2.93
4450 4984 3.338249 TGTGGAAAGACTAGCATTCTGC 58.662 45.455 0.00 0.00 45.46 4.26
4451 4985 5.947228 TTTGTGGAAAGACTAGCATTCTG 57.053 39.130 0.00 0.00 0.00 3.02
4452 4986 6.299141 TCTTTTGTGGAAAGACTAGCATTCT 58.701 36.000 0.00 0.00 46.69 2.40
4453 4987 6.560253 TCTTTTGTGGAAAGACTAGCATTC 57.440 37.500 0.00 0.00 46.69 2.67
4463 4997 5.358922 TGGCTGATTTTCTTTTGTGGAAAG 58.641 37.500 0.00 0.00 44.99 2.62
4464 4998 5.350504 TGGCTGATTTTCTTTTGTGGAAA 57.649 34.783 0.00 0.00 0.00 3.13
4465 4999 5.128499 TCTTGGCTGATTTTCTTTTGTGGAA 59.872 36.000 0.00 0.00 0.00 3.53
4466 5000 4.648762 TCTTGGCTGATTTTCTTTTGTGGA 59.351 37.500 0.00 0.00 0.00 4.02
4467 5001 4.947645 TCTTGGCTGATTTTCTTTTGTGG 58.052 39.130 0.00 0.00 0.00 4.17
4468 5002 6.757947 TCTTTCTTGGCTGATTTTCTTTTGTG 59.242 34.615 0.00 0.00 0.00 3.33
4469 5003 6.877236 TCTTTCTTGGCTGATTTTCTTTTGT 58.123 32.000 0.00 0.00 0.00 2.83
4470 5004 7.775397 TTCTTTCTTGGCTGATTTTCTTTTG 57.225 32.000 0.00 0.00 0.00 2.44
4471 5005 8.791327 TTTTCTTTCTTGGCTGATTTTCTTTT 57.209 26.923 0.00 0.00 0.00 2.27
4472 5006 8.969260 ATTTTCTTTCTTGGCTGATTTTCTTT 57.031 26.923 0.00 0.00 0.00 2.52
4473 5007 8.969260 AATTTTCTTTCTTGGCTGATTTTCTT 57.031 26.923 0.00 0.00 0.00 2.52
4474 5008 9.481340 GTAATTTTCTTTCTTGGCTGATTTTCT 57.519 29.630 0.00 0.00 0.00 2.52
4475 5009 9.260002 TGTAATTTTCTTTCTTGGCTGATTTTC 57.740 29.630 0.00 0.00 0.00 2.29
4476 5010 9.612066 TTGTAATTTTCTTTCTTGGCTGATTTT 57.388 25.926 0.00 0.00 0.00 1.82
4477 5011 9.783081 ATTGTAATTTTCTTTCTTGGCTGATTT 57.217 25.926 0.00 0.00 0.00 2.17
4478 5012 9.783081 AATTGTAATTTTCTTTCTTGGCTGATT 57.217 25.926 0.00 0.00 0.00 2.57
4494 5028 9.462606 AGGATTCTTCGGTCTTAATTGTAATTT 57.537 29.630 0.00 0.00 0.00 1.82
4495 5029 9.110502 GAGGATTCTTCGGTCTTAATTGTAATT 57.889 33.333 0.00 0.00 0.00 1.40
4496 5030 8.487028 AGAGGATTCTTCGGTCTTAATTGTAAT 58.513 33.333 0.00 0.00 0.00 1.89
4497 5031 7.848128 AGAGGATTCTTCGGTCTTAATTGTAA 58.152 34.615 0.00 0.00 0.00 2.41
4498 5032 7.419711 AGAGGATTCTTCGGTCTTAATTGTA 57.580 36.000 0.00 0.00 0.00 2.41
4499 5033 6.301169 AGAGGATTCTTCGGTCTTAATTGT 57.699 37.500 0.00 0.00 0.00 2.71
4500 5034 8.604890 GTTTAGAGGATTCTTCGGTCTTAATTG 58.395 37.037 0.00 0.00 34.79 2.32
4501 5035 7.769507 GGTTTAGAGGATTCTTCGGTCTTAATT 59.230 37.037 0.00 0.00 34.79 1.40
4502 5036 7.125963 AGGTTTAGAGGATTCTTCGGTCTTAAT 59.874 37.037 0.00 0.00 34.79 1.40
4503 5037 6.439692 AGGTTTAGAGGATTCTTCGGTCTTAA 59.560 38.462 0.00 0.00 34.79 1.85
4504 5038 5.956563 AGGTTTAGAGGATTCTTCGGTCTTA 59.043 40.000 0.00 0.00 34.79 2.10
4505 5039 4.778427 AGGTTTAGAGGATTCTTCGGTCTT 59.222 41.667 0.00 0.00 34.79 3.01
4506 5040 4.354662 AGGTTTAGAGGATTCTTCGGTCT 58.645 43.478 0.00 0.00 34.79 3.85
4507 5041 4.739587 AGGTTTAGAGGATTCTTCGGTC 57.260 45.455 0.00 0.00 34.79 4.79
4508 5042 6.616237 TTTAGGTTTAGAGGATTCTTCGGT 57.384 37.500 0.00 0.00 34.79 4.69
4509 5043 7.916914 TTTTTAGGTTTAGAGGATTCTTCGG 57.083 36.000 0.00 0.00 34.79 4.30
4539 5073 3.314553 TGTGTAAAGACTAGCGTTCTGC 58.685 45.455 0.00 0.00 46.98 4.26
4540 5074 5.900339 TTTGTGTAAAGACTAGCGTTCTG 57.100 39.130 0.00 0.00 0.00 3.02
4556 5090 5.476091 TCTTGGTTGGTTTTCTTTTGTGT 57.524 34.783 0.00 0.00 0.00 3.72
4564 5098 9.157104 TGTAATTTTCTTTCTTGGTTGGTTTTC 57.843 29.630 0.00 0.00 0.00 2.29
4567 5101 9.325198 GATTGTAATTTTCTTTCTTGGTTGGTT 57.675 29.630 0.00 0.00 0.00 3.67
4572 5106 9.750125 GTCTTGATTGTAATTTTCTTTCTTGGT 57.250 29.630 0.00 0.00 0.00 3.67
4603 5137 1.285578 GCGTCAAGCTCAGAGGATTC 58.714 55.000 11.61 0.00 44.04 2.52
4621 5155 2.989881 GCAGGTAAAGGGCGTTGGC 61.990 63.158 0.00 0.00 38.90 4.52
4644 5178 2.273449 GGCTGCTATGGTGGTGCT 59.727 61.111 0.00 0.00 0.00 4.40
4689 5224 1.535444 TTCGAGCTGGGGTGAGGAA 60.535 57.895 0.00 0.00 0.00 3.36
4699 5234 3.729965 ATGGAGCCGCTTCGAGCTG 62.730 63.158 1.10 0.00 40.11 4.24
4705 5240 1.673168 ATCAGAAATGGAGCCGCTTC 58.327 50.000 0.00 0.00 0.00 3.86
4713 5248 5.509716 CAAAGCTGCATATCAGAAATGGA 57.490 39.130 1.02 0.00 45.72 3.41
4731 5266 1.089920 CATCTTGGAGGTCGGCAAAG 58.910 55.000 0.00 0.00 0.00 2.77
4769 5304 2.633481 GTGTCCTTCTGAGGTACCACTT 59.367 50.000 15.94 0.00 43.97 3.16
4770 5305 2.249139 GTGTCCTTCTGAGGTACCACT 58.751 52.381 15.94 0.00 43.97 4.00
4777 5312 1.618837 TCGAAAGGTGTCCTTCTGAGG 59.381 52.381 1.36 0.00 43.92 3.86
4793 5328 7.335673 TCTGCAACATTGACCTTAAATATCGAA 59.664 33.333 0.00 0.00 0.00 3.71
4804 5339 2.957402 TCCTTCTGCAACATTGACCT 57.043 45.000 0.00 0.00 0.00 3.85
4816 5351 5.864628 TCGTCGATATCACTATCCTTCTG 57.135 43.478 3.12 0.00 31.67 3.02
4820 5355 5.941058 ACATCTTCGTCGATATCACTATCCT 59.059 40.000 3.12 0.00 31.67 3.24
4821 5356 6.024664 CACATCTTCGTCGATATCACTATCC 58.975 44.000 3.12 0.00 31.67 2.59
4825 5360 4.555708 GCTCACATCTTCGTCGATATCACT 60.556 45.833 3.12 0.00 0.00 3.41
4866 5401 2.582498 GGTCGAATCGCCGTCCTG 60.582 66.667 0.00 0.00 35.44 3.86
4883 5418 3.266636 TCAGCACCATACAACATTACGG 58.733 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.