Multiple sequence alignment - TraesCS5B01G153100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G153100 chr5B 100.000 4027 0 0 1 4027 282276335 282272309 0.000000e+00 7437.0
1 TraesCS5B01G153100 chr5D 96.078 1581 44 9 684 2250 249533189 249531613 0.000000e+00 2560.0
2 TraesCS5B01G153100 chr5D 91.713 893 45 13 2408 3288 249531316 249530441 0.000000e+00 1212.0
3 TraesCS5B01G153100 chr5D 94.852 777 32 5 6 776 249533913 249533139 0.000000e+00 1206.0
4 TraesCS5B01G153100 chr5D 90.598 234 18 1 3720 3949 249529599 249529366 1.410000e-79 307.0
5 TraesCS5B01G153100 chr5D 81.250 304 30 14 3331 3608 249530342 249530040 1.880000e-53 220.0
6 TraesCS5B01G153100 chr5A 95.684 1367 30 7 684 2049 332290577 332289239 0.000000e+00 2170.0
7 TraesCS5B01G153100 chr5A 94.935 770 31 5 1 764 332291306 332290539 0.000000e+00 1199.0
8 TraesCS5B01G153100 chr5A 89.941 845 47 19 2408 3247 332288282 332287471 0.000000e+00 1055.0
9 TraesCS5B01G153100 chr5A 95.430 372 8 2 3298 3660 332250565 332250194 5.800000e-163 584.0
10 TraesCS5B01G153100 chr5A 95.735 211 6 3 2042 2250 332288790 332288581 1.790000e-88 337.0
11 TraesCS5B01G153100 chr5A 90.385 52 4 1 2326 2377 646183776 646183826 2.600000e-07 67.6
12 TraesCS5B01G153100 chr5A 90.196 51 5 0 2328 2378 673934534 673934484 2.600000e-07 67.6
13 TraesCS5B01G153100 chr6B 97.727 44 1 0 2335 2378 574033742 574033699 4.320000e-10 76.8
14 TraesCS5B01G153100 chr2D 94.000 50 1 2 2328 2377 313635372 313635419 1.550000e-09 75.0
15 TraesCS5B01G153100 chr4D 92.000 50 4 0 2328 2377 503813677 503813726 2.010000e-08 71.3
16 TraesCS5B01G153100 chr7B 100.000 36 0 0 2342 2377 24127769 24127804 2.600000e-07 67.6
17 TraesCS5B01G153100 chr7A 91.837 49 3 1 2329 2377 660488852 660488805 2.600000e-07 67.6
18 TraesCS5B01G153100 chr3B 89.286 56 1 4 2328 2378 616095034 616094979 9.340000e-07 65.8
19 TraesCS5B01G153100 chr3A 86.441 59 8 0 2319 2377 456722193 456722135 9.340000e-07 65.8
20 TraesCS5B01G153100 chr7D 100.000 28 0 0 3992 4019 579098168 579098195 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G153100 chr5B 282272309 282276335 4026 True 7437.00 7437 100.00000 1 4027 1 chr5B.!!$R1 4026
1 TraesCS5B01G153100 chr5D 249529366 249533913 4547 True 1101.00 2560 90.89820 6 3949 5 chr5D.!!$R1 3943
2 TraesCS5B01G153100 chr5A 332287471 332291306 3835 True 1190.25 2170 94.07375 1 3247 4 chr5A.!!$R3 3246

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 1.405463 GGCCGGCTCTCATTAAAAAGG 59.595 52.381 28.56 0.0 0.0 3.11 F
1121 1174 1.064685 TCCATCTGAGCGTCCTAGTGA 60.065 52.381 0.00 0.0 0.0 3.41 F
2832 3586 0.392193 CAAGGAGCGCTTCACCATCT 60.392 55.000 20.11 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1180 1233 0.038166 TCTTGGTGATGTTCAGGGGC 59.962 55.0 0.00 0.0 0.00 5.80 R
2922 3676 0.179161 CGGTAGTCGCTGAAGGTGAG 60.179 60.0 0.00 0.0 34.88 3.51 R
3710 4861 0.179184 GACGTTCTGAGCTCGACTCC 60.179 60.0 9.64 0.0 45.61 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 173 8.991243 ATCAATTGATATGTGTTGTTCTTTGG 57.009 30.769 19.42 0.00 32.01 3.28
309 310 7.962964 ATCACGAAAATGAAGTTCACTTAGA 57.037 32.000 7.96 1.29 36.11 2.10
335 336 9.889128 AATTGCAAATACAATTACTATTGCCTT 57.111 25.926 1.71 6.55 45.92 4.35
354 355 4.481463 CCTTAGTAAATTTTGTGTGGCCG 58.519 43.478 0.00 0.00 0.00 6.13
369 370 2.091541 TGGCCGGCTCTCATTAAAAAG 58.908 47.619 28.56 0.00 0.00 2.27
370 371 1.405463 GGCCGGCTCTCATTAAAAAGG 59.595 52.381 28.56 0.00 0.00 3.11
396 397 7.433131 GGTAACAATGACGTCGATTAACTCATA 59.567 37.037 11.62 0.00 0.00 2.15
398 399 5.747197 ACAATGACGTCGATTAACTCATACC 59.253 40.000 11.62 0.00 0.00 2.73
399 400 5.769484 ATGACGTCGATTAACTCATACCT 57.231 39.130 11.62 0.00 0.00 3.08
411 412 7.724305 TTAACTCATACCTGTGTTCAGAAAC 57.276 36.000 0.00 0.00 43.76 2.78
710 717 9.236006 AGATTGTATCTTCCATTAATGGCATAC 57.764 33.333 26.98 26.34 37.47 2.39
724 731 8.532186 TTAATGGCATACAAAACTGTATCCAT 57.468 30.769 0.00 15.78 40.33 3.41
752 759 9.289782 AGATTGTATCTTCCATTAATGGCTTAC 57.710 33.333 26.98 21.98 37.47 2.34
1121 1174 1.064685 TCCATCTGAGCGTCCTAGTGA 60.065 52.381 0.00 0.00 0.00 3.41
1146 1199 5.819379 TGTCACAAATGATCCTAATCTCAGC 59.181 40.000 0.00 0.00 37.14 4.26
1180 1233 5.767269 TCGATCTTGCTAGCTTCTCTAATG 58.233 41.667 17.23 0.00 0.00 1.90
1371 1424 3.070590 ACTTACCGGTAACATATGAGGGC 59.929 47.826 23.17 0.00 0.00 5.19
1377 1430 3.513912 CGGTAACATATGAGGGCTATGGA 59.486 47.826 10.38 0.00 32.06 3.41
1410 1463 3.160269 AGTTGAGAAAGGGGCAATCTTG 58.840 45.455 0.00 0.00 0.00 3.02
1500 1553 4.538738 AGATTCCTACTGACCTGAGGTAC 58.461 47.826 2.97 0.00 35.25 3.34
1503 1556 3.632333 TCCTACTGACCTGAGGTACATG 58.368 50.000 2.97 0.00 35.25 3.21
1528 1582 9.893305 TGATATTTTTCTTTTCTCGAGAAAACC 57.107 29.630 37.30 16.70 46.81 3.27
1539 1593 3.486383 TCGAGAAAACCCAGCTTCATTT 58.514 40.909 0.00 0.00 0.00 2.32
1541 1595 5.067273 TCGAGAAAACCCAGCTTCATTTTA 58.933 37.500 0.00 0.00 0.00 1.52
1622 1676 7.648039 TGTTTGGTTACACAGTTTCCTATTT 57.352 32.000 0.00 0.00 0.00 1.40
1623 1677 8.068892 TGTTTGGTTACACAGTTTCCTATTTT 57.931 30.769 0.00 0.00 0.00 1.82
1624 1678 9.186837 TGTTTGGTTACACAGTTTCCTATTTTA 57.813 29.630 0.00 0.00 0.00 1.52
1632 1686 8.472007 ACACAGTTTCCTATTTTATTTGTCCA 57.528 30.769 0.00 0.00 0.00 4.02
1633 1687 9.088987 ACACAGTTTCCTATTTTATTTGTCCAT 57.911 29.630 0.00 0.00 0.00 3.41
2177 2705 7.642082 TCTATAAGGAAGTCAAGAGTACCAC 57.358 40.000 0.00 0.00 0.00 4.16
2200 2728 5.244626 ACATATTCTTGGCTTCTTTGCAAGT 59.755 36.000 0.00 0.00 34.04 3.16
2241 2769 8.910351 AGAATTTGGATAGTATGAAGCTAACC 57.090 34.615 0.00 0.00 33.58 2.85
2242 2770 7.939588 AGAATTTGGATAGTATGAAGCTAACCC 59.060 37.037 0.00 0.00 32.45 4.11
2243 2771 5.562298 TTGGATAGTATGAAGCTAACCCC 57.438 43.478 0.00 0.00 32.45 4.95
2244 2772 4.827789 TGGATAGTATGAAGCTAACCCCT 58.172 43.478 0.00 0.00 32.45 4.79
2245 2773 5.972698 TGGATAGTATGAAGCTAACCCCTA 58.027 41.667 0.00 0.00 32.45 3.53
2246 2774 6.571624 TGGATAGTATGAAGCTAACCCCTAT 58.428 40.000 0.00 0.00 32.45 2.57
2247 2775 7.715482 TGGATAGTATGAAGCTAACCCCTATA 58.285 38.462 0.00 0.00 32.45 1.31
2248 2776 7.618512 TGGATAGTATGAAGCTAACCCCTATAC 59.381 40.741 0.00 0.00 32.45 1.47
2249 2777 7.618512 GGATAGTATGAAGCTAACCCCTATACA 59.381 40.741 0.00 0.00 0.00 2.29
2250 2778 8.967779 ATAGTATGAAGCTAACCCCTATACAA 57.032 34.615 0.00 0.00 0.00 2.41
2251 2779 7.873699 AGTATGAAGCTAACCCCTATACAAT 57.126 36.000 0.00 0.00 0.00 2.71
2252 2780 8.967779 AGTATGAAGCTAACCCCTATACAATA 57.032 34.615 0.00 0.00 0.00 1.90
2253 2781 9.562226 AGTATGAAGCTAACCCCTATACAATAT 57.438 33.333 0.00 0.00 0.00 1.28
2256 2784 9.784376 ATGAAGCTAACCCCTATACAATATAGA 57.216 33.333 4.72 0.00 0.00 1.98
2257 2785 9.610104 TGAAGCTAACCCCTATACAATATAGAA 57.390 33.333 4.72 0.00 0.00 2.10
2284 2812 7.616150 TCTGGATAGTATGAAGCTAACCCTATC 59.384 40.741 9.92 9.92 32.45 2.08
2286 2814 6.183360 GGATAGTATGAAGCTAACCCTATCCG 60.183 46.154 16.92 0.00 39.47 4.18
2287 2815 3.833070 AGTATGAAGCTAACCCTATCCGG 59.167 47.826 0.00 0.00 0.00 5.14
2288 2816 2.464796 TGAAGCTAACCCTATCCGGA 57.535 50.000 6.61 6.61 33.16 5.14
2292 2820 2.458620 AGCTAACCCTATCCGGATAGC 58.541 52.381 36.44 29.18 43.06 2.97
2293 2821 2.176889 GCTAACCCTATCCGGATAGCA 58.823 52.381 36.44 22.64 42.65 3.49
2294 2822 2.766828 GCTAACCCTATCCGGATAGCAT 59.233 50.000 36.44 27.10 42.65 3.79
2295 2823 3.430929 GCTAACCCTATCCGGATAGCATG 60.431 52.174 36.44 28.64 42.65 4.06
2296 2824 2.327325 ACCCTATCCGGATAGCATGT 57.673 50.000 36.44 29.17 39.48 3.21
2297 2825 3.468071 ACCCTATCCGGATAGCATGTA 57.532 47.619 36.44 12.69 39.48 2.29
2298 2826 3.366396 ACCCTATCCGGATAGCATGTAG 58.634 50.000 36.44 24.47 39.48 2.74
2299 2827 3.011369 ACCCTATCCGGATAGCATGTAGA 59.989 47.826 36.44 11.28 39.48 2.59
2363 2894 5.479306 CCTCCGATCCATATTAATTGTCGT 58.521 41.667 0.00 0.00 0.00 4.34
2459 3205 7.707464 TGTACACTTTCTGAAGTTTCGACATAA 59.293 33.333 0.00 0.00 43.48 1.90
2487 3234 4.621991 TCTGAACTACTGAACTGCTTCAC 58.378 43.478 0.00 0.00 32.68 3.18
2510 3257 9.301897 TCACTGATCAATATACTAGTATGCTGT 57.698 33.333 23.09 12.34 0.00 4.40
2511 3258 9.566530 CACTGATCAATATACTAGTATGCTGTC 57.433 37.037 23.09 17.24 0.00 3.51
2512 3259 9.527157 ACTGATCAATATACTAGTATGCTGTCT 57.473 33.333 23.09 12.16 0.00 3.41
2644 3397 7.849515 CAGATACGTGAAAAAGATGATGACATG 59.150 37.037 0.00 0.00 36.82 3.21
2650 3403 2.812836 AAGATGATGACATGGGTGCA 57.187 45.000 0.00 0.00 36.82 4.57
2651 3404 3.308035 AAGATGATGACATGGGTGCAT 57.692 42.857 0.00 0.00 36.82 3.96
2652 3405 2.583143 AGATGATGACATGGGTGCATG 58.417 47.619 0.00 0.00 36.82 4.06
2653 3406 1.000607 GATGATGACATGGGTGCATGC 60.001 52.381 11.82 11.82 36.82 4.06
2684 3437 5.390779 GCAGAGAGAAGTTGAATGAAAGAGC 60.391 44.000 0.00 0.00 0.00 4.09
2772 3526 1.599047 CAGATCCTGAGCAACGGGT 59.401 57.895 8.31 0.00 44.89 5.28
2832 3586 0.392193 CAAGGAGCGCTTCACCATCT 60.392 55.000 20.11 0.00 0.00 2.90
2922 3676 4.162690 CGCTGTACCAGGAGGCCC 62.163 72.222 0.00 0.00 39.06 5.80
3036 3795 0.328926 TGCAGCTTGATCCACCATCA 59.671 50.000 0.00 0.00 39.99 3.07
3061 3820 4.625028 TCTCAGTCAGCATGGATAAATCG 58.375 43.478 0.00 0.00 36.16 3.34
3086 3848 2.842457 TGTATCAGCATGGACAGCATC 58.158 47.619 0.00 0.00 36.16 3.91
3098 3860 2.097142 GGACAGCATCTGAATCTGTTGC 59.903 50.000 13.14 13.14 40.74 4.17
3130 3892 0.183492 GCAGTTGGGAGATATGGGCA 59.817 55.000 0.00 0.00 0.00 5.36
3221 3984 5.687285 GCCTTCCATTTTATACAAATGCTCG 59.313 40.000 11.67 0.00 36.56 5.03
3230 3993 0.523072 ACAAATGCTCGGTCATGTGC 59.477 50.000 7.58 0.00 35.57 4.57
3289 4052 4.661993 CGTCATCGTTGAATCAAAGGAA 57.338 40.909 8.90 0.00 32.48 3.36
3290 4053 5.221891 CGTCATCGTTGAATCAAAGGAAT 57.778 39.130 8.90 0.00 32.48 3.01
3292 4055 6.086222 CGTCATCGTTGAATCAAAGGAATTT 58.914 36.000 8.90 0.00 32.48 1.82
3296 4059 7.393234 TCATCGTTGAATCAAAGGAATTTAGGT 59.607 33.333 8.90 0.00 0.00 3.08
3307 4132 3.941483 AGGAATTTAGGTGCTGACATTCG 59.059 43.478 0.00 0.00 0.00 3.34
3313 4138 2.046023 TGCTGACATTCGCTGGGG 60.046 61.111 0.00 0.00 0.00 4.96
3314 4139 2.045926 GCTGACATTCGCTGGGGT 60.046 61.111 0.00 0.00 0.00 4.95
3316 4141 1.296392 CTGACATTCGCTGGGGTGA 59.704 57.895 5.37 0.00 0.00 4.02
3318 4143 1.191489 TGACATTCGCTGGGGTGAGA 61.191 55.000 5.37 0.00 33.24 3.27
3319 4144 0.179000 GACATTCGCTGGGGTGAGAT 59.821 55.000 5.37 0.00 33.24 2.75
3320 4145 0.179000 ACATTCGCTGGGGTGAGATC 59.821 55.000 5.37 0.00 33.24 2.75
3321 4146 0.533755 CATTCGCTGGGGTGAGATCC 60.534 60.000 0.00 0.00 33.24 3.36
3323 4148 1.198094 TTCGCTGGGGTGAGATCCAA 61.198 55.000 0.00 0.00 33.24 3.53
3324 4149 1.153289 CGCTGGGGTGAGATCCAAG 60.153 63.158 0.00 0.00 31.97 3.61
3325 4150 1.452833 GCTGGGGTGAGATCCAAGC 60.453 63.158 0.00 0.00 33.73 4.01
3326 4151 1.153289 CTGGGGTGAGATCCAAGCG 60.153 63.158 0.00 0.00 31.97 4.68
3327 4152 1.612146 TGGGGTGAGATCCAAGCGA 60.612 57.895 0.00 0.00 0.00 4.93
3328 4153 1.198094 TGGGGTGAGATCCAAGCGAA 61.198 55.000 0.00 0.00 0.00 4.70
3329 4154 0.744771 GGGGTGAGATCCAAGCGAAC 60.745 60.000 0.00 0.00 0.00 3.95
3387 4212 3.911365 CGCTTATTGACGAAAATTGCACA 59.089 39.130 0.00 0.00 0.00 4.57
3392 4217 7.110079 GCTTATTGACGAAAATTGCACAAAAAC 59.890 33.333 0.00 0.00 0.00 2.43
3393 4218 6.660887 ATTGACGAAAATTGCACAAAAACT 57.339 29.167 0.00 0.00 0.00 2.66
3398 4223 8.165428 TGACGAAAATTGCACAAAAACTAAAAG 58.835 29.630 0.00 0.00 0.00 2.27
3406 4231 4.267690 GCACAAAAACTAAAAGACTGCCAC 59.732 41.667 0.00 0.00 0.00 5.01
3424 4252 1.516864 CACGCTTTTTCTGAAAACCGC 59.483 47.619 23.56 21.25 37.34 5.68
3429 4257 3.383761 CTTTTTCTGAAAACCGCATGCT 58.616 40.909 17.13 0.00 31.72 3.79
3442 4270 0.744874 GCATGCTCACAGATGCCATT 59.255 50.000 11.37 0.00 39.29 3.16
3443 4271 1.536072 GCATGCTCACAGATGCCATTG 60.536 52.381 11.37 0.00 39.29 2.82
3456 4310 2.086510 CCATTGGTGGTAGCGAACG 58.913 57.895 0.00 0.00 40.83 3.95
3463 4317 0.110823 GTGGTAGCGAACGTTTGCTG 60.111 55.000 40.64 17.32 46.97 4.41
3464 4318 0.249531 TGGTAGCGAACGTTTGCTGA 60.250 50.000 40.64 26.31 46.97 4.26
3466 4320 0.438830 GTAGCGAACGTTTGCTGAGG 59.561 55.000 40.64 11.48 46.97 3.86
3468 4322 0.320771 AGCGAACGTTTGCTGAGGAT 60.321 50.000 36.24 15.96 45.91 3.24
3469 4323 0.517316 GCGAACGTTTGCTGAGGATT 59.483 50.000 29.32 0.00 34.69 3.01
3470 4324 1.730064 GCGAACGTTTGCTGAGGATTA 59.270 47.619 29.32 0.00 34.69 1.75
3471 4325 2.158841 GCGAACGTTTGCTGAGGATTAA 59.841 45.455 29.32 0.00 34.69 1.40
3472 4326 3.732943 CGAACGTTTGCTGAGGATTAAC 58.267 45.455 0.46 0.00 0.00 2.01
3473 4327 3.720920 CGAACGTTTGCTGAGGATTAACG 60.721 47.826 0.46 8.96 44.97 3.18
3474 4328 2.762745 ACGTTTGCTGAGGATTAACGT 58.237 42.857 10.14 10.14 46.71 3.99
3475 4329 3.806316 CGTTTGCTGAGGATTAACGTT 57.194 42.857 5.88 5.88 37.42 3.99
3476 4330 3.732943 CGTTTGCTGAGGATTAACGTTC 58.267 45.455 2.82 0.00 37.42 3.95
3477 4331 3.432252 CGTTTGCTGAGGATTAACGTTCT 59.568 43.478 2.82 0.00 37.42 3.01
3478 4332 4.624024 CGTTTGCTGAGGATTAACGTTCTA 59.376 41.667 2.82 0.00 37.42 2.10
3479 4333 5.119588 CGTTTGCTGAGGATTAACGTTCTAA 59.880 40.000 2.82 0.00 37.42 2.10
3480 4334 6.347079 CGTTTGCTGAGGATTAACGTTCTAAA 60.347 38.462 2.82 0.00 37.42 1.85
3481 4335 7.357303 GTTTGCTGAGGATTAACGTTCTAAAA 58.643 34.615 2.82 0.00 0.00 1.52
3482 4336 7.681939 TTGCTGAGGATTAACGTTCTAAAAT 57.318 32.000 2.82 0.00 0.00 1.82
3483 4337 7.681939 TGCTGAGGATTAACGTTCTAAAATT 57.318 32.000 2.82 0.00 0.00 1.82
3484 4338 8.106247 TGCTGAGGATTAACGTTCTAAAATTT 57.894 30.769 2.82 0.00 0.00 1.82
3485 4339 9.221933 TGCTGAGGATTAACGTTCTAAAATTTA 57.778 29.630 2.82 0.00 0.00 1.40
3516 4370 6.760770 TGCTTTTGACCAAAATAACCTTCTTG 59.239 34.615 8.19 0.00 39.29 3.02
3552 4406 5.709164 TGGATGCAATTTTATTTTTGGTGGG 59.291 36.000 0.00 0.00 0.00 4.61
3555 4409 4.752101 TGCAATTTTATTTTTGGTGGGTCG 59.248 37.500 0.00 0.00 0.00 4.79
3564 4418 0.971386 TTGGTGGGTCGAAGAGGTAC 59.029 55.000 0.00 0.00 36.95 3.34
3565 4419 0.901580 TGGTGGGTCGAAGAGGTACC 60.902 60.000 2.73 2.73 36.95 3.34
3567 4421 0.531200 GTGGGTCGAAGAGGTACCAG 59.469 60.000 15.94 0.00 36.95 4.00
3568 4422 0.406750 TGGGTCGAAGAGGTACCAGA 59.593 55.000 15.94 2.36 36.95 3.86
3569 4423 1.006758 TGGGTCGAAGAGGTACCAGAT 59.993 52.381 15.94 0.00 36.95 2.90
3570 4424 1.682323 GGGTCGAAGAGGTACCAGATC 59.318 57.143 15.94 7.68 36.95 2.75
3571 4425 1.682323 GGTCGAAGAGGTACCAGATCC 59.318 57.143 15.94 3.38 36.95 3.36
3572 4426 1.682323 GTCGAAGAGGTACCAGATCCC 59.318 57.143 15.94 0.00 36.95 3.85
3573 4427 1.569548 TCGAAGAGGTACCAGATCCCT 59.430 52.381 15.94 0.00 0.00 4.20
3608 4471 0.833287 TTGGCCTGTAGAGATGGAGC 59.167 55.000 3.32 0.00 0.00 4.70
3613 4678 1.686052 CCTGTAGAGATGGAGCCACTC 59.314 57.143 9.61 9.61 0.00 3.51
3619 4684 0.392193 AGATGGAGCCACTCTTTGCG 60.392 55.000 0.00 0.00 0.00 4.85
3628 4693 2.100916 GCCACTCTTTGCGGAGATACTA 59.899 50.000 7.91 0.00 37.13 1.82
3630 4695 4.113354 CCACTCTTTGCGGAGATACTAAC 58.887 47.826 7.91 0.00 37.13 2.34
3639 4704 3.454375 CGGAGATACTAACGCACCAAAT 58.546 45.455 0.00 0.00 0.00 2.32
3646 4711 2.614983 ACTAACGCACCAAATCGTGTTT 59.385 40.909 0.00 0.00 39.06 2.83
3662 4813 3.594134 GTGTTTGGATGGAGACTGAGAG 58.406 50.000 0.00 0.00 0.00 3.20
3684 4835 0.537143 TTCGCTGAAGGTGGCACAAT 60.537 50.000 20.82 7.07 44.16 2.71
3688 4839 2.436417 GCTGAAGGTGGCACAATCTTA 58.564 47.619 20.82 1.31 44.16 2.10
3689 4840 2.819608 GCTGAAGGTGGCACAATCTTAA 59.180 45.455 20.82 6.01 44.16 1.85
3690 4841 3.366374 GCTGAAGGTGGCACAATCTTAAC 60.366 47.826 20.82 3.78 44.16 2.01
3691 4842 2.811431 TGAAGGTGGCACAATCTTAACG 59.189 45.455 20.82 0.00 44.16 3.18
3692 4843 1.821216 AGGTGGCACAATCTTAACGG 58.179 50.000 20.82 0.00 44.16 4.44
3693 4844 1.349688 AGGTGGCACAATCTTAACGGA 59.650 47.619 20.82 0.00 44.16 4.69
3694 4845 2.156098 GGTGGCACAATCTTAACGGAA 58.844 47.619 20.82 0.00 44.16 4.30
3695 4846 2.554893 GGTGGCACAATCTTAACGGAAA 59.445 45.455 20.82 0.00 44.16 3.13
3696 4847 3.004944 GGTGGCACAATCTTAACGGAAAA 59.995 43.478 20.82 0.00 44.16 2.29
3697 4848 4.500035 GGTGGCACAATCTTAACGGAAAAA 60.500 41.667 20.82 0.00 44.16 1.94
3725 4876 2.878429 GCGGAGTCGAGCTCAGAA 59.122 61.111 15.40 0.00 45.88 3.02
3726 4877 1.515304 GCGGAGTCGAGCTCAGAAC 60.515 63.158 15.40 8.58 45.88 3.01
3727 4878 1.226156 CGGAGTCGAGCTCAGAACG 60.226 63.158 15.40 12.59 45.88 3.95
3728 4879 1.877367 GGAGTCGAGCTCAGAACGT 59.123 57.895 15.40 0.95 45.88 3.99
3730 4881 0.519586 GAGTCGAGCTCAGAACGTCG 60.520 60.000 15.40 0.00 43.58 5.12
3738 4931 1.719780 GCTCAGAACGTCGGTTTACAG 59.280 52.381 0.00 0.00 36.24 2.74
3743 4936 4.022589 TCAGAACGTCGGTTTACAGAGAAT 60.023 41.667 0.00 0.00 36.24 2.40
3754 4947 6.116126 GGTTTACAGAGAATGGTTGATAGCT 58.884 40.000 0.00 0.00 0.00 3.32
3825 5022 3.515502 AGCTACAGTGGCAGATCTGTTTA 59.484 43.478 23.38 7.96 43.39 2.01
3837 5034 8.420222 TGGCAGATCTGTTTATCTTTTCAAAAA 58.580 29.630 23.38 0.00 33.87 1.94
3854 5051 7.532682 TTCAAAAATTTCAACCTTTCTTCGG 57.467 32.000 0.00 0.00 0.00 4.30
3864 5061 3.881220 ACCTTTCTTCGGAAAACAGTGA 58.119 40.909 0.00 0.00 42.50 3.41
3869 5066 5.630661 TTCTTCGGAAAACAGTGAACAAA 57.369 34.783 0.00 0.00 0.00 2.83
3905 5102 7.436536 AATGCGAATAATGTTCGAAAATGTC 57.563 32.000 16.02 0.00 43.97 3.06
3908 5105 6.858478 TGCGAATAATGTTCGAAAATGTCAAA 59.142 30.769 16.02 0.00 43.97 2.69
3941 5138 7.581011 AAATGCAAATAGAACCTTTAAAGCG 57.419 32.000 9.86 5.99 0.00 4.68
3949 5146 4.149598 AGAACCTTTAAAGCGGGAACAAT 58.850 39.130 9.86 0.00 0.00 2.71
3950 5147 4.587262 AGAACCTTTAAAGCGGGAACAATT 59.413 37.500 9.86 0.00 0.00 2.32
3951 5148 4.948341 ACCTTTAAAGCGGGAACAATTT 57.052 36.364 9.86 0.00 0.00 1.82
3952 5149 5.284861 ACCTTTAAAGCGGGAACAATTTT 57.715 34.783 9.86 0.00 0.00 1.82
3953 5150 5.676552 ACCTTTAAAGCGGGAACAATTTTT 58.323 33.333 9.86 0.00 0.00 1.94
3983 5180 9.434420 AAAGTGAACAAAAATTGAGAAACATGA 57.566 25.926 0.00 0.00 0.00 3.07
3984 5181 9.434420 AAGTGAACAAAAATTGAGAAACATGAA 57.566 25.926 0.00 0.00 0.00 2.57
3985 5182 9.434420 AGTGAACAAAAATTGAGAAACATGAAA 57.566 25.926 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 1.915141 AGGGACAGAATTGGTTGCAG 58.085 50.000 0.00 0.00 0.00 4.41
172 173 7.219535 CAGATAATGCTTGCACATAGTCAAAAC 59.780 37.037 0.00 0.00 0.00 2.43
309 310 9.889128 AAGGCAATAGTAATTGTATTTGCAATT 57.111 25.926 0.00 10.69 46.79 2.32
335 336 2.229302 GCCGGCCACACAAAATTTACTA 59.771 45.455 18.11 0.00 0.00 1.82
354 355 6.584185 TTGTTACCCTTTTTAATGAGAGCC 57.416 37.500 0.00 0.00 0.00 4.70
369 370 4.866486 AGTTAATCGACGTCATTGTTACCC 59.134 41.667 17.16 2.71 0.00 3.69
370 371 5.574055 TGAGTTAATCGACGTCATTGTTACC 59.426 40.000 17.16 1.61 0.00 2.85
876 929 2.500910 GCAATTCATGGTGGGATTGGAA 59.499 45.455 0.00 0.00 0.00 3.53
1121 1174 6.485984 GCTGAGATTAGGATCATTTGTGACAT 59.514 38.462 0.00 0.00 34.60 3.06
1134 1187 3.051940 ACTGGGATGCTGAGATTAGGA 57.948 47.619 0.00 0.00 0.00 2.94
1146 1199 4.000331 AGCAAGATCGATAACTGGGATG 58.000 45.455 0.00 0.00 0.00 3.51
1180 1233 0.038166 TCTTGGTGATGTTCAGGGGC 59.962 55.000 0.00 0.00 0.00 5.80
1371 1424 0.533755 CTCCAAGGCGGCTTCCATAG 60.534 60.000 22.91 10.16 33.14 2.23
1377 1430 1.302832 CTCAACTCCAAGGCGGCTT 60.303 57.895 19.90 19.90 33.14 4.35
1410 1463 6.487299 AGGAAGTAATAGTCACTCCAATCC 57.513 41.667 0.00 0.00 0.00 3.01
1636 1690 9.814899 CCTGCATAAATACCAAAACAATATCAA 57.185 29.630 0.00 0.00 0.00 2.57
2024 2093 9.702494 GATACATATCACATCAGATTGACAGAA 57.298 33.333 0.00 0.00 32.98 3.02
2025 2094 9.086758 AGATACATATCACATCAGATTGACAGA 57.913 33.333 1.88 0.00 35.17 3.41
2223 2751 7.618512 TGTATAGGGGTTAGCTTCATACTATCC 59.381 40.741 0.00 0.00 0.00 2.59
2224 2752 8.591114 TGTATAGGGGTTAGCTTCATACTATC 57.409 38.462 0.00 0.00 0.00 2.08
2225 2753 8.967779 TTGTATAGGGGTTAGCTTCATACTAT 57.032 34.615 0.00 0.00 0.00 2.12
2226 2754 8.967779 ATTGTATAGGGGTTAGCTTCATACTA 57.032 34.615 0.00 0.00 0.00 1.82
2227 2755 7.873699 ATTGTATAGGGGTTAGCTTCATACT 57.126 36.000 0.00 0.00 0.00 2.12
2230 2758 9.784376 TCTATATTGTATAGGGGTTAGCTTCAT 57.216 33.333 0.00 0.00 0.00 2.57
2231 2759 9.610104 TTCTATATTGTATAGGGGTTAGCTTCA 57.390 33.333 0.00 0.00 0.00 3.02
2238 2766 9.805204 ATCCAGATTCTATATTGTATAGGGGTT 57.195 33.333 4.63 0.00 0.00 4.11
2253 2781 9.026121 GGTTAGCTTCATACTATCCAGATTCTA 57.974 37.037 0.00 0.00 32.12 2.10
2254 2782 7.038658 GGGTTAGCTTCATACTATCCAGATTCT 60.039 40.741 0.00 0.00 33.05 2.40
2255 2783 7.038658 AGGGTTAGCTTCATACTATCCAGATTC 60.039 40.741 0.00 0.00 33.05 2.52
2256 2784 6.789959 AGGGTTAGCTTCATACTATCCAGATT 59.210 38.462 0.00 0.00 33.05 2.40
2257 2785 6.326970 AGGGTTAGCTTCATACTATCCAGAT 58.673 40.000 0.00 0.00 33.05 2.90
2258 2786 5.716979 AGGGTTAGCTTCATACTATCCAGA 58.283 41.667 0.00 0.00 33.05 3.86
2259 2787 7.726033 ATAGGGTTAGCTTCATACTATCCAG 57.274 40.000 0.00 0.00 33.05 3.86
2284 2812 4.519350 TCAACTACTCTACATGCTATCCGG 59.481 45.833 0.00 0.00 0.00 5.14
2286 2814 9.015367 TCTTATCAACTACTCTACATGCTATCC 57.985 37.037 0.00 0.00 0.00 2.59
2337 2868 6.630413 CGACAATTAATATGGATCGGAGGGAT 60.630 42.308 0.00 0.00 38.35 3.85
2418 3164 4.798882 AGTGTACAGGCTAGCTAGATCTT 58.201 43.478 25.15 7.67 0.00 2.40
2459 3205 6.940739 AGCAGTTCAGTAGTTCAGATATGTT 58.059 36.000 0.00 0.00 0.00 2.71
2531 3284 5.356751 TGCATGTCAACAAACTACTGAACTT 59.643 36.000 0.00 0.00 0.00 2.66
2533 3286 5.168526 TGCATGTCAACAAACTACTGAAC 57.831 39.130 0.00 0.00 0.00 3.18
2536 3289 5.361135 TCATGCATGTCAACAAACTACTG 57.639 39.130 25.43 0.00 0.00 2.74
2653 3406 3.007635 TCAACTTCTCTCTGCATGCATG 58.992 45.455 22.97 22.70 0.00 4.06
2663 3416 4.999950 TGGCTCTTTCATTCAACTTCTCTC 59.000 41.667 0.00 0.00 0.00 3.20
2684 3437 1.323271 TTCGTAGGAGGCTCTGCTGG 61.323 60.000 15.23 0.86 33.39 4.85
2772 3526 1.292223 GCTCCACGCTCCTGTAACA 59.708 57.895 0.00 0.00 35.14 2.41
2810 3564 2.383527 GGTGAAGCGCTCCTTGTCG 61.384 63.158 12.06 0.00 32.78 4.35
2832 3586 0.321671 CGAGGGTTGCAGAAGAAGGA 59.678 55.000 0.00 0.00 0.00 3.36
2922 3676 0.179161 CGGTAGTCGCTGAAGGTGAG 60.179 60.000 0.00 0.00 34.88 3.51
3036 3795 5.426689 TTTATCCATGCTGACTGAGAAGT 57.573 39.130 0.00 0.00 0.00 3.01
3061 3820 4.576053 TGCTGTCCATGCTGATACATTTAC 59.424 41.667 0.00 0.00 0.00 2.01
3086 3848 4.274459 GGCAACCTATAGCAACAGATTCAG 59.726 45.833 0.00 0.00 0.00 3.02
3098 3860 2.292267 CCAACTGCTGGCAACCTATAG 58.708 52.381 0.00 0.00 38.76 1.31
3137 3899 6.872547 TGTACAAACAAATTACATGCATGCAT 59.127 30.769 27.46 27.46 32.48 3.96
3221 3984 0.452987 ATCATTGCACGCACATGACC 59.547 50.000 14.69 0.00 31.60 4.02
3256 4019 1.426621 GATGACGTCACTCGCGGTA 59.573 57.895 22.71 0.00 44.19 4.02
3288 4051 3.127548 CAGCGAATGTCAGCACCTAAATT 59.872 43.478 0.00 0.00 35.48 1.82
3289 4052 2.679837 CAGCGAATGTCAGCACCTAAAT 59.320 45.455 0.00 0.00 35.48 1.40
3290 4053 2.076100 CAGCGAATGTCAGCACCTAAA 58.924 47.619 0.00 0.00 35.48 1.85
3292 4055 0.108186 CCAGCGAATGTCAGCACCTA 60.108 55.000 0.00 0.00 35.48 3.08
3296 4059 2.046023 CCCCAGCGAATGTCAGCA 60.046 61.111 0.00 0.00 35.48 4.41
3307 4132 1.452833 GCTTGGATCTCACCCCAGC 60.453 63.158 0.00 0.00 33.43 4.85
3313 4138 0.737715 AGCGTTCGCTTGGATCTCAC 60.738 55.000 14.02 0.00 38.46 3.51
3314 4139 0.458543 GAGCGTTCGCTTGGATCTCA 60.459 55.000 20.26 0.00 42.08 3.27
3316 4141 1.153549 GGAGCGTTCGCTTGGATCT 60.154 57.895 20.26 0.00 42.08 2.75
3318 4143 1.448540 CTGGAGCGTTCGCTTGGAT 60.449 57.895 20.26 0.00 42.08 3.41
3319 4144 2.048222 CTGGAGCGTTCGCTTGGA 60.048 61.111 20.26 7.25 42.08 3.53
3320 4145 2.048222 TCTGGAGCGTTCGCTTGG 60.048 61.111 20.26 13.09 42.08 3.61
3321 4146 2.734673 GCTCTGGAGCGTTCGCTTG 61.735 63.158 20.26 13.45 45.29 4.01
3366 4191 5.820926 TTGTGCAATTTTCGTCAATAAGC 57.179 34.783 0.00 0.00 0.00 3.09
3367 4192 8.327429 AGTTTTTGTGCAATTTTCGTCAATAAG 58.673 29.630 0.00 0.00 0.00 1.73
3387 4212 3.380320 AGCGTGGCAGTCTTTTAGTTTTT 59.620 39.130 0.00 0.00 0.00 1.94
3392 4217 3.626028 AAAAGCGTGGCAGTCTTTTAG 57.374 42.857 19.10 0.00 38.01 1.85
3393 4218 3.630312 AGAAAAAGCGTGGCAGTCTTTTA 59.370 39.130 20.18 0.00 38.60 1.52
3398 4223 0.944386 TCAGAAAAAGCGTGGCAGTC 59.056 50.000 0.00 0.00 0.00 3.51
3424 4252 1.067060 CCAATGGCATCTGTGAGCATG 59.933 52.381 0.00 0.00 0.00 4.06
3429 4257 3.269578 CCACCAATGGCATCTGTGA 57.730 52.632 23.31 0.00 39.82 3.58
3442 4270 1.500512 GCAAACGTTCGCTACCACCA 61.501 55.000 3.41 0.00 0.00 4.17
3443 4271 1.205820 GCAAACGTTCGCTACCACC 59.794 57.895 3.41 0.00 0.00 4.61
3456 4310 6.476243 TTAGAACGTTAATCCTCAGCAAAC 57.524 37.500 0.00 0.00 0.00 2.93
3463 4317 9.983804 CACCTAAATTTTAGAACGTTAATCCTC 57.016 33.333 16.13 0.00 0.00 3.71
3464 4318 8.456471 GCACCTAAATTTTAGAACGTTAATCCT 58.544 33.333 16.13 0.00 0.00 3.24
3466 4320 9.274065 CAGCACCTAAATTTTAGAACGTTAATC 57.726 33.333 16.13 0.00 0.00 1.75
3468 4322 7.040961 AGCAGCACCTAAATTTTAGAACGTTAA 60.041 33.333 16.13 0.00 0.00 2.01
3469 4323 6.428771 AGCAGCACCTAAATTTTAGAACGTTA 59.571 34.615 16.13 0.00 0.00 3.18
3470 4324 5.240844 AGCAGCACCTAAATTTTAGAACGTT 59.759 36.000 16.13 0.00 0.00 3.99
3471 4325 4.760204 AGCAGCACCTAAATTTTAGAACGT 59.240 37.500 16.13 4.65 0.00 3.99
3472 4326 5.296813 AGCAGCACCTAAATTTTAGAACG 57.703 39.130 16.13 6.46 0.00 3.95
3473 4327 7.651704 TCAAAAGCAGCACCTAAATTTTAGAAC 59.348 33.333 16.13 6.40 0.00 3.01
3474 4328 7.651704 GTCAAAAGCAGCACCTAAATTTTAGAA 59.348 33.333 16.13 0.00 0.00 2.10
3475 4329 7.145323 GTCAAAAGCAGCACCTAAATTTTAGA 58.855 34.615 16.13 0.00 0.00 2.10
3476 4330 6.366061 GGTCAAAAGCAGCACCTAAATTTTAG 59.634 38.462 8.88 8.88 0.00 1.85
3477 4331 6.183360 TGGTCAAAAGCAGCACCTAAATTTTA 60.183 34.615 0.00 0.00 0.00 1.52
3478 4332 5.056480 GGTCAAAAGCAGCACCTAAATTTT 58.944 37.500 0.00 0.00 0.00 1.82
3479 4333 4.100808 TGGTCAAAAGCAGCACCTAAATTT 59.899 37.500 0.00 0.00 0.00 1.82
3480 4334 3.640967 TGGTCAAAAGCAGCACCTAAATT 59.359 39.130 0.00 0.00 0.00 1.82
3481 4335 3.230134 TGGTCAAAAGCAGCACCTAAAT 58.770 40.909 0.00 0.00 0.00 1.40
3482 4336 2.660572 TGGTCAAAAGCAGCACCTAAA 58.339 42.857 0.00 0.00 0.00 1.85
3483 4337 2.356665 TGGTCAAAAGCAGCACCTAA 57.643 45.000 0.00 0.00 0.00 2.69
3484 4338 2.356665 TTGGTCAAAAGCAGCACCTA 57.643 45.000 0.00 0.00 33.72 3.08
3485 4339 1.484038 TTTGGTCAAAAGCAGCACCT 58.516 45.000 0.00 0.00 33.72 4.00
3516 4370 2.336945 TGCATCCACCATCACAGATC 57.663 50.000 0.00 0.00 0.00 2.75
3552 4406 1.682323 GGGATCTGGTACCTCTTCGAC 59.318 57.143 14.36 0.00 0.00 4.20
3555 4409 3.519913 ACAAAGGGATCTGGTACCTCTTC 59.480 47.826 14.36 6.72 41.88 2.87
3564 4418 0.329261 TCAGCCACAAAGGGATCTGG 59.671 55.000 0.00 0.00 38.09 3.86
3565 4419 2.205022 TTCAGCCACAAAGGGATCTG 57.795 50.000 0.00 0.00 38.09 2.90
3567 4421 1.203287 GCTTTCAGCCACAAAGGGATC 59.797 52.381 2.74 0.00 38.09 3.36
3568 4422 1.203100 AGCTTTCAGCCACAAAGGGAT 60.203 47.619 0.00 0.00 43.77 3.85
3569 4423 0.185901 AGCTTTCAGCCACAAAGGGA 59.814 50.000 0.00 0.00 43.77 4.20
3570 4424 1.043022 AAGCTTTCAGCCACAAAGGG 58.957 50.000 0.00 0.00 43.77 3.95
3571 4425 2.476821 CAAAGCTTTCAGCCACAAAGG 58.523 47.619 9.23 0.00 43.77 3.11
3572 4426 2.476821 CCAAAGCTTTCAGCCACAAAG 58.523 47.619 9.23 0.00 43.77 2.77
3573 4427 1.473080 GCCAAAGCTTTCAGCCACAAA 60.473 47.619 9.23 0.00 43.77 2.83
3619 4684 3.489785 CGATTTGGTGCGTTAGTATCTCC 59.510 47.826 0.00 0.00 0.00 3.71
3628 4693 1.535015 CCAAACACGATTTGGTGCGTT 60.535 47.619 20.82 0.00 42.92 4.84
3630 4695 0.309302 TCCAAACACGATTTGGTGCG 59.691 50.000 25.08 9.02 46.75 5.34
3635 4700 3.753272 AGTCTCCATCCAAACACGATTTG 59.247 43.478 9.14 9.14 0.00 2.32
3639 4704 1.967779 TCAGTCTCCATCCAAACACGA 59.032 47.619 0.00 0.00 0.00 4.35
3646 4711 2.244486 AAGCTCTCAGTCTCCATCCA 57.756 50.000 0.00 0.00 0.00 3.41
3710 4861 0.179184 GACGTTCTGAGCTCGACTCC 60.179 60.000 9.64 0.00 45.61 3.85
3711 4862 0.519586 CGACGTTCTGAGCTCGACTC 60.520 60.000 9.64 7.74 46.45 3.36
3713 4864 1.512310 CCGACGTTCTGAGCTCGAC 60.512 63.158 9.64 6.92 0.00 4.20
3714 4865 1.512996 AACCGACGTTCTGAGCTCGA 61.513 55.000 9.64 6.70 0.00 4.04
3715 4866 0.663568 AAACCGACGTTCTGAGCTCG 60.664 55.000 9.64 4.19 0.00 5.03
3717 4868 1.338973 TGTAAACCGACGTTCTGAGCT 59.661 47.619 0.00 0.00 0.00 4.09
3718 4869 1.719780 CTGTAAACCGACGTTCTGAGC 59.280 52.381 0.00 0.00 0.00 4.26
3719 4870 3.058432 TCTCTGTAAACCGACGTTCTGAG 60.058 47.826 0.00 0.00 0.00 3.35
3720 4871 2.880268 TCTCTGTAAACCGACGTTCTGA 59.120 45.455 0.00 0.00 0.00 3.27
3722 4873 3.996150 TTCTCTGTAAACCGACGTTCT 57.004 42.857 0.00 0.00 0.00 3.01
3723 4874 3.367025 CCATTCTCTGTAAACCGACGTTC 59.633 47.826 0.00 0.00 0.00 3.95
3725 4876 2.298163 ACCATTCTCTGTAAACCGACGT 59.702 45.455 0.00 0.00 0.00 4.34
3726 4877 2.955614 ACCATTCTCTGTAAACCGACG 58.044 47.619 0.00 0.00 0.00 5.12
3727 4878 4.312443 TCAACCATTCTCTGTAAACCGAC 58.688 43.478 0.00 0.00 0.00 4.79
3728 4879 4.610605 TCAACCATTCTCTGTAAACCGA 57.389 40.909 0.00 0.00 0.00 4.69
3730 4881 6.116126 AGCTATCAACCATTCTCTGTAAACC 58.884 40.000 0.00 0.00 0.00 3.27
3738 4931 5.440234 TCGAGTAGCTATCAACCATTCTC 57.560 43.478 0.00 0.00 0.00 2.87
3754 4947 0.612174 AGGAGTTGCCAGCTCGAGTA 60.612 55.000 15.13 0.00 40.02 2.59
3785 4982 6.493116 TGTAGCTAGTACTTAAGCTTTAGCG 58.507 40.000 22.08 0.00 46.82 4.26
3837 5034 6.127451 ACTGTTTTCCGAAGAAAGGTTGAAAT 60.127 34.615 0.00 0.00 42.78 2.17
3852 5049 6.885735 AGAAAATTTGTTCACTGTTTTCCG 57.114 33.333 0.00 0.00 38.75 4.30
3884 5081 6.846870 TTGACATTTTCGAACATTATTCGC 57.153 33.333 0.00 0.00 41.30 4.70
3957 5154 9.434420 TCATGTTTCTCAATTTTTGTTCACTTT 57.566 25.926 0.00 0.00 0.00 2.66
3958 5155 9.434420 TTCATGTTTCTCAATTTTTGTTCACTT 57.566 25.926 0.00 0.00 0.00 3.16
3959 5156 9.434420 TTTCATGTTTCTCAATTTTTGTTCACT 57.566 25.926 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.