Multiple sequence alignment - TraesCS5B01G152800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G152800 chr5B 100.000 3149 0 0 1 3149 282013192 282010044 0.000000e+00 5816.0
1 TraesCS5B01G152800 chr5B 89.637 193 16 2 2455 2646 528682828 528683017 3.140000e-60 243.0
2 TraesCS5B01G152800 chr5B 94.521 146 7 1 2554 2699 594097840 594097696 1.140000e-54 224.0
3 TraesCS5B01G152800 chr5B 90.728 151 10 4 358 505 82212323 82212174 6.890000e-47 198.0
4 TraesCS5B01G152800 chr5D 94.728 1195 35 19 509 1681 249088068 249086880 0.000000e+00 1832.0
5 TraesCS5B01G152800 chr5D 92.206 603 16 13 1854 2453 249086872 249086298 0.000000e+00 824.0
6 TraesCS5B01G152800 chr5D 98.123 373 4 3 3 374 249088426 249088056 0.000000e+00 647.0
7 TraesCS5B01G152800 chr5D 87.952 415 36 9 2735 3149 249084436 249084036 7.900000e-131 477.0
8 TraesCS5B01G152800 chr5D 93.865 163 10 0 1685 1847 539916013 539915851 2.430000e-61 246.0
9 TraesCS5B01G152800 chr5D 91.279 172 14 1 1676 1846 296949348 296949519 1.890000e-57 233.0
10 TraesCS5B01G152800 chr5D 90.361 83 8 0 3067 3149 371288846 371288928 3.320000e-20 110.0
11 TraesCS5B01G152800 chr5D 82.243 107 13 6 2749 2852 464499894 464499997 1.560000e-13 87.9
12 TraesCS5B01G152800 chr5D 82.051 78 9 3 3073 3149 23168250 23168177 9.430000e-06 62.1
13 TraesCS5B01G152800 chr5D 90.698 43 3 1 3069 3111 242570617 242570658 4.390000e-04 56.5
14 TraesCS5B01G152800 chr5A 93.021 1003 35 14 509 1495 331890352 331889369 0.000000e+00 1432.0
15 TraesCS5B01G152800 chr5A 92.000 575 27 9 1879 2453 331889063 331888508 0.000000e+00 789.0
16 TraesCS5B01G152800 chr5A 96.602 206 3 3 171 374 331890543 331890340 3.890000e-89 339.0
17 TraesCS5B01G152800 chr5A 91.322 242 20 1 2772 3013 331861951 331861711 2.340000e-86 329.0
18 TraesCS5B01G152800 chr5A 97.175 177 5 0 1510 1686 331889259 331889083 1.840000e-77 300.0
19 TraesCS5B01G152800 chr5A 94.964 139 7 0 3011 3149 331861338 331861200 5.290000e-53 219.0
20 TraesCS5B01G152800 chr5A 94.815 135 7 0 371 505 569986878 569987012 8.850000e-51 211.0
21 TraesCS5B01G152800 chr5A 93.478 138 8 1 378 515 81476813 81476677 1.480000e-48 204.0
22 TraesCS5B01G152800 chr7B 91.775 231 14 3 2455 2683 692342463 692342236 1.820000e-82 316.0
23 TraesCS5B01G152800 chr7B 86.498 237 23 8 2456 2689 703989887 703990117 5.210000e-63 252.0
24 TraesCS5B01G152800 chr7B 94.805 77 4 0 3073 3149 717325336 717325260 1.530000e-23 121.0
25 TraesCS5B01G152800 chr2B 88.312 231 27 0 1920 2150 758389858 758389628 8.600000e-71 278.0
26 TraesCS5B01G152800 chr2B 87.879 231 28 0 1920 2150 758147492 758147262 4.000000e-69 272.0
27 TraesCS5B01G152800 chr1B 87.446 231 27 2 2457 2685 322097701 322097931 6.700000e-67 265.0
28 TraesCS5B01G152800 chr1B 93.939 165 10 0 1682 1846 450130945 450130781 1.880000e-62 250.0
29 TraesCS5B01G152800 chr1B 92.814 167 12 0 1680 1846 592305004 592305170 3.140000e-60 243.0
30 TraesCS5B01G152800 chr1B 92.814 167 12 0 1680 1846 592346819 592346985 3.140000e-60 243.0
31 TraesCS5B01G152800 chr1B 91.250 80 6 1 3070 3149 48685190 48685268 1.190000e-19 108.0
32 TraesCS5B01G152800 chr2D 86.638 232 31 0 1920 2151 585861020 585861251 1.120000e-64 257.0
33 TraesCS5B01G152800 chr2D 86.580 231 31 0 1920 2150 619426466 619426236 4.030000e-64 255.0
34 TraesCS5B01G152800 chr2D 85.714 231 33 0 1920 2150 619436523 619436293 8.720000e-61 244.0
35 TraesCS5B01G152800 chr2D 94.118 136 7 1 370 505 380830888 380831022 4.120000e-49 206.0
36 TraesCS5B01G152800 chr7A 92.899 169 12 0 1682 1850 727851121 727851289 2.430000e-61 246.0
37 TraesCS5B01G152800 chr7A 95.420 131 6 0 378 508 158665223 158665093 3.180000e-50 209.0
38 TraesCS5B01G152800 chr7A 85.625 160 17 5 2457 2615 434732666 434732512 2.510000e-36 163.0
39 TraesCS5B01G152800 chr6B 93.373 166 11 0 1681 1846 699977445 699977610 2.430000e-61 246.0
40 TraesCS5B01G152800 chr4B 93.333 165 11 0 1682 1846 41528093 41528257 8.720000e-61 244.0
41 TraesCS5B01G152800 chr4B 90.184 163 10 5 2554 2716 567584869 567584713 1.140000e-49 207.0
42 TraesCS5B01G152800 chr2A 85.714 231 33 0 1920 2150 750581233 750581003 8.720000e-61 244.0
43 TraesCS5B01G152800 chr2A 85.714 231 33 0 1920 2150 750617278 750617048 8.720000e-61 244.0
44 TraesCS5B01G152800 chr2A 94.161 137 7 1 379 515 20004780 20004645 1.140000e-49 207.0
45 TraesCS5B01G152800 chr2A 92.405 79 6 0 3071 3149 84193587 84193665 2.570000e-21 113.0
46 TraesCS5B01G152800 chr2A 91.250 80 7 0 3070 3149 86064678 86064599 3.320000e-20 110.0
47 TraesCS5B01G152800 chr3A 85.837 233 26 7 2456 2685 24052139 24052367 1.130000e-59 241.0
48 TraesCS5B01G152800 chr3A 78.947 133 26 2 2749 2880 490173204 490173073 4.330000e-14 89.8
49 TraesCS5B01G152800 chr3A 80.769 104 17 3 2778 2880 650027527 650027426 9.360000e-11 78.7
50 TraesCS5B01G152800 chr1D 90.960 177 15 1 1681 1856 249557174 249557350 1.460000e-58 237.0
51 TraesCS5B01G152800 chr1D 90.000 80 5 3 3071 3149 222919088 222919011 2.000000e-17 100.0
52 TraesCS5B01G152800 chr7D 86.979 192 21 2 2498 2685 99822011 99821820 2.460000e-51 213.0
53 TraesCS5B01G152800 chr7D 96.850 127 4 0 379 505 246023470 246023344 2.460000e-51 213.0
54 TraesCS5B01G152800 chr7D 95.918 98 4 0 2457 2554 201831142 201831045 3.250000e-35 159.0
55 TraesCS5B01G152800 chr7D 94.186 86 4 1 3064 3149 124626851 124626935 2.550000e-26 130.0
56 TraesCS5B01G152800 chr7D 94.937 79 3 1 3071 3149 124664666 124664743 4.270000e-24 122.0
57 TraesCS5B01G152800 chr7D 94.203 69 4 0 3081 3149 613399153 613399085 4.300000e-19 106.0
58 TraesCS5B01G152800 chr4A 93.478 138 8 1 368 505 659458982 659459118 1.480000e-48 204.0
59 TraesCS5B01G152800 chr1A 93.478 138 8 1 371 508 202073646 202073510 1.480000e-48 204.0
60 TraesCS5B01G152800 chr1A 81.148 122 22 1 2749 2870 561274147 561274027 2.590000e-16 97.1
61 TraesCS5B01G152800 chr1A 79.389 131 21 6 2739 2868 482802284 482802409 1.560000e-13 87.9
62 TraesCS5B01G152800 chr1A 79.389 131 21 6 2739 2868 482808964 482809089 1.560000e-13 87.9
63 TraesCS5B01G152800 chr1A 83.824 68 11 0 3081 3148 95103910 95103977 7.290000e-07 65.8
64 TraesCS5B01G152800 chr6A 81.780 236 38 4 2456 2689 383956898 383957130 3.210000e-45 193.0
65 TraesCS5B01G152800 chr6A 79.130 115 21 3 2749 2862 522351508 522351396 3.370000e-10 76.8
66 TraesCS5B01G152800 chrUn 91.818 110 6 2 2449 2558 29187564 29187458 1.960000e-32 150.0
67 TraesCS5B01G152800 chrUn 90.909 77 7 0 3073 3149 345308948 345308872 1.540000e-18 104.0
68 TraesCS5B01G152800 chr4D 90.123 81 7 1 3069 3149 5795217 5795138 1.540000e-18 104.0
69 TraesCS5B01G152800 chr3B 78.947 133 26 2 2749 2880 93689342 93689473 4.330000e-14 89.8
70 TraesCS5B01G152800 chr6D 93.878 49 2 1 3069 3117 459191168 459191121 4.360000e-09 73.1
71 TraesCS5B01G152800 chr3D 83.582 67 10 1 3081 3147 332153152 332153087 9.430000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G152800 chr5B 282010044 282013192 3148 True 5816 5816 100.00000 1 3149 1 chr5B.!!$R2 3148
1 TraesCS5B01G152800 chr5D 249084036 249088426 4390 True 945 1832 93.25225 3 3149 4 chr5D.!!$R3 3146
2 TraesCS5B01G152800 chr5A 331888508 331890543 2035 True 715 1432 94.69950 171 2453 4 chr5A.!!$R3 2282
3 TraesCS5B01G152800 chr5A 331861200 331861951 751 True 274 329 93.14300 2772 3149 2 chr5A.!!$R2 377

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 1.003545 CCATTCACCGATCGACAATGC 60.004 52.381 18.66 0.0 0.00 3.56 F
1345 1362 1.207791 AGGTGATGGTGGATCCTGAC 58.792 55.000 14.23 3.2 37.07 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1415 0.179171 GCTCGAGCTTAGCACGTACA 60.179 55.0 29.88 4.08 42.61 2.90 R
2606 2760 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.0 0.00 0.00 0.00 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 8.572855 AAGATTTTCTGTGAGCTAGCTAAAAT 57.427 30.769 24.91 24.91 0.00 1.82
117 118 1.003545 CCATTCACCGATCGACAATGC 60.004 52.381 18.66 0.00 0.00 3.56
187 188 3.782046 CAGGGGTACAGAAGAACATACG 58.218 50.000 0.00 0.00 0.00 3.06
304 306 2.159198 CCATATCTGCTTTGCGCCTTTT 60.159 45.455 4.18 0.00 38.05 2.27
305 307 3.514645 CATATCTGCTTTGCGCCTTTTT 58.485 40.909 4.18 0.00 38.05 1.94
361 364 3.570125 CGATGACTGGATTCACCTAGCTA 59.430 47.826 0.00 0.00 39.86 3.32
362 365 4.320861 CGATGACTGGATTCACCTAGCTAG 60.321 50.000 14.20 14.20 39.86 3.42
363 366 2.695666 TGACTGGATTCACCTAGCTAGC 59.304 50.000 15.74 6.62 39.86 3.42
364 367 2.962421 GACTGGATTCACCTAGCTAGCT 59.038 50.000 23.12 23.12 39.86 3.32
365 368 4.145807 GACTGGATTCACCTAGCTAGCTA 58.854 47.826 22.85 22.85 39.86 3.32
366 369 4.148838 ACTGGATTCACCTAGCTAGCTAG 58.851 47.826 35.39 35.39 44.07 3.42
367 370 4.148838 CTGGATTCACCTAGCTAGCTAGT 58.851 47.826 37.50 26.87 43.22 2.57
368 371 5.163077 ACTGGATTCACCTAGCTAGCTAGTA 60.163 44.000 37.50 25.07 43.22 1.82
369 372 5.702266 TGGATTCACCTAGCTAGCTAGTAA 58.298 41.667 37.50 29.76 43.22 2.24
370 373 6.315714 TGGATTCACCTAGCTAGCTAGTAAT 58.684 40.000 37.50 31.96 43.22 1.89
371 374 7.467650 TGGATTCACCTAGCTAGCTAGTAATA 58.532 38.462 37.50 25.02 43.22 0.98
372 375 7.948447 TGGATTCACCTAGCTAGCTAGTAATAA 59.052 37.037 37.50 27.90 43.22 1.40
373 376 8.463607 GGATTCACCTAGCTAGCTAGTAATAAG 58.536 40.741 37.50 27.17 43.22 1.73
374 377 6.821031 TCACCTAGCTAGCTAGTAATAAGC 57.179 41.667 37.50 8.45 43.22 3.09
387 390 7.819644 GCTAGTAATAAGCTAGTACTTCCTCC 58.180 42.308 0.00 0.00 39.85 4.30
388 391 6.880942 AGTAATAAGCTAGTACTTCCTCCG 57.119 41.667 0.00 0.00 36.27 4.63
389 392 6.363882 AGTAATAAGCTAGTACTTCCTCCGT 58.636 40.000 0.00 0.00 36.27 4.69
390 393 6.832900 AGTAATAAGCTAGTACTTCCTCCGTT 59.167 38.462 0.00 0.00 36.27 4.44
391 394 5.771153 ATAAGCTAGTACTTCCTCCGTTC 57.229 43.478 0.00 0.00 0.00 3.95
392 395 3.369242 AGCTAGTACTTCCTCCGTTCT 57.631 47.619 0.00 0.00 0.00 3.01
393 396 3.018149 AGCTAGTACTTCCTCCGTTCTG 58.982 50.000 0.00 0.00 0.00 3.02
394 397 3.015327 GCTAGTACTTCCTCCGTTCTGA 58.985 50.000 0.00 0.00 0.00 3.27
395 398 3.442977 GCTAGTACTTCCTCCGTTCTGAA 59.557 47.826 0.00 0.00 0.00 3.02
396 399 4.098196 GCTAGTACTTCCTCCGTTCTGAAT 59.902 45.833 0.00 0.00 0.00 2.57
397 400 5.394333 GCTAGTACTTCCTCCGTTCTGAATT 60.394 44.000 0.00 0.00 0.00 2.17
398 401 6.183360 GCTAGTACTTCCTCCGTTCTGAATTA 60.183 42.308 0.00 0.00 0.00 1.40
399 402 5.963594 AGTACTTCCTCCGTTCTGAATTAC 58.036 41.667 0.00 0.00 0.00 1.89
400 403 5.715753 AGTACTTCCTCCGTTCTGAATTACT 59.284 40.000 0.00 0.00 32.76 2.24
401 404 5.485209 ACTTCCTCCGTTCTGAATTACTT 57.515 39.130 0.00 0.00 0.00 2.24
402 405 5.238583 ACTTCCTCCGTTCTGAATTACTTG 58.761 41.667 0.00 0.00 0.00 3.16
403 406 4.884668 TCCTCCGTTCTGAATTACTTGT 57.115 40.909 0.00 0.00 0.00 3.16
404 407 4.817517 TCCTCCGTTCTGAATTACTTGTC 58.182 43.478 0.00 0.00 0.00 3.18
405 408 4.527038 TCCTCCGTTCTGAATTACTTGTCT 59.473 41.667 0.00 0.00 0.00 3.41
406 409 5.011738 TCCTCCGTTCTGAATTACTTGTCTT 59.988 40.000 0.00 0.00 0.00 3.01
407 410 5.120830 CCTCCGTTCTGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
408 411 4.994852 TCCGTTCTGAATTACTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
409 412 4.994852 CCGTTCTGAATTACTTGTCTTGGA 59.005 41.667 0.00 0.00 0.00 3.53
410 413 5.643777 CCGTTCTGAATTACTTGTCTTGGAT 59.356 40.000 0.00 0.00 0.00 3.41
411 414 6.149474 CCGTTCTGAATTACTTGTCTTGGATT 59.851 38.462 0.00 0.00 0.00 3.01
412 415 7.308589 CCGTTCTGAATTACTTGTCTTGGATTT 60.309 37.037 0.00 0.00 0.00 2.17
413 416 7.535258 CGTTCTGAATTACTTGTCTTGGATTTG 59.465 37.037 0.00 0.00 0.00 2.32
414 417 8.352942 GTTCTGAATTACTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
415 418 8.099364 TCTGAATTACTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
416 419 7.939039 TCTGAATTACTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
417 420 9.219603 CTGAATTACTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
418 421 9.219603 TGAATTACTTGTCTTGGATTTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
419 422 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
420 423 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
422 425 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
423 426 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
424 427 8.037758 ACTTGTCTTGGATTTGTCTAGATACAG 58.962 37.037 0.00 0.00 0.00 2.74
425 428 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
426 429 8.311395 TGTCTTGGATTTGTCTAGATACAGAT 57.689 34.615 0.00 0.00 0.00 2.90
427 430 8.200120 TGTCTTGGATTTGTCTAGATACAGATG 58.800 37.037 0.00 0.00 0.00 2.90
428 431 8.200792 GTCTTGGATTTGTCTAGATACAGATGT 58.799 37.037 0.00 0.00 0.00 3.06
429 432 9.421399 TCTTGGATTTGTCTAGATACAGATGTA 57.579 33.333 0.00 0.00 34.67 2.29
459 462 8.364142 AGACTCATTTTAGTGCTAGATACATCC 58.636 37.037 0.00 0.00 0.00 3.51
460 463 7.148641 ACTCATTTTAGTGCTAGATACATCCG 58.851 38.462 0.00 0.00 0.00 4.18
461 464 7.050970 TCATTTTAGTGCTAGATACATCCGT 57.949 36.000 0.00 0.00 0.00 4.69
462 465 8.173542 TCATTTTAGTGCTAGATACATCCGTA 57.826 34.615 0.00 0.00 0.00 4.02
463 466 8.803235 TCATTTTAGTGCTAGATACATCCGTAT 58.197 33.333 0.00 0.00 41.16 3.06
547 550 8.187480 AGAGAAAAGAAAGAAAGAAAGCAGAAC 58.813 33.333 0.00 0.00 0.00 3.01
701 709 1.616865 TCCGTCTCCCTGTTACTTGTG 59.383 52.381 0.00 0.00 0.00 3.33
1192 1200 2.573340 GGGGGCGCAATGAAACAG 59.427 61.111 10.83 0.00 0.00 3.16
1301 1318 1.703438 CTGCTCCTTCTCATGCACGC 61.703 60.000 0.00 0.00 0.00 5.34
1345 1362 1.207791 AGGTGATGGTGGATCCTGAC 58.792 55.000 14.23 3.20 37.07 3.51
1480 1531 7.420800 CCTAATTTCTTGTATCAGTTGATGCC 58.579 38.462 4.90 0.00 36.50 4.40
1683 1830 3.192212 TGCATGTGGATTTCGCATTGTAA 59.808 39.130 0.00 0.00 43.43 2.41
1686 1833 5.399301 GCATGTGGATTTCGCATTGTAATAC 59.601 40.000 0.00 0.00 43.43 1.89
1688 1835 6.358118 TGTGGATTTCGCATTGTAATACTC 57.642 37.500 0.00 0.00 0.00 2.59
1690 1837 4.819630 TGGATTTCGCATTGTAATACTCCC 59.180 41.667 0.00 0.00 0.00 4.30
1691 1838 5.063880 GGATTTCGCATTGTAATACTCCCT 58.936 41.667 0.00 0.00 0.00 4.20
1692 1839 5.179555 GGATTTCGCATTGTAATACTCCCTC 59.820 44.000 0.00 0.00 0.00 4.30
1693 1840 3.746045 TCGCATTGTAATACTCCCTCC 57.254 47.619 0.00 0.00 0.00 4.30
1694 1841 2.035449 TCGCATTGTAATACTCCCTCCG 59.965 50.000 0.00 0.00 0.00 4.63
1695 1842 2.223971 CGCATTGTAATACTCCCTCCGT 60.224 50.000 0.00 0.00 0.00 4.69
1696 1843 3.740141 CGCATTGTAATACTCCCTCCGTT 60.740 47.826 0.00 0.00 0.00 4.44
1697 1844 3.808174 GCATTGTAATACTCCCTCCGTTC 59.192 47.826 0.00 0.00 0.00 3.95
1698 1845 4.377897 CATTGTAATACTCCCTCCGTTCC 58.622 47.826 0.00 0.00 0.00 3.62
1699 1846 3.393426 TGTAATACTCCCTCCGTTCCT 57.607 47.619 0.00 0.00 0.00 3.36
1700 1847 4.524802 TGTAATACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
1701 1848 4.870636 TGTAATACTCCCTCCGTTCCTAA 58.129 43.478 0.00 0.00 0.00 2.69
1702 1849 5.271598 TGTAATACTCCCTCCGTTCCTAAA 58.728 41.667 0.00 0.00 0.00 1.85
1703 1850 5.901276 TGTAATACTCCCTCCGTTCCTAAAT 59.099 40.000 0.00 0.00 0.00 1.40
1704 1851 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
1705 1852 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
1706 1853 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
1707 1854 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
1708 1855 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
1709 1856 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
1710 1857 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
1711 1858 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
1712 1859 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
1713 1860 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
1714 1861 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
1715 1862 5.935789 TCCGTTCCTAAATGTAAGTCTTTGG 59.064 40.000 0.00 0.00 0.00 3.28
1716 1863 5.935789 CCGTTCCTAAATGTAAGTCTTTGGA 59.064 40.000 0.00 0.00 0.00 3.53
1717 1864 6.092259 CCGTTCCTAAATGTAAGTCTTTGGAG 59.908 42.308 0.00 0.00 0.00 3.86
1718 1865 6.092259 CGTTCCTAAATGTAAGTCTTTGGAGG 59.908 42.308 0.00 0.00 0.00 4.30
1719 1866 6.062258 TCCTAAATGTAAGTCTTTGGAGGG 57.938 41.667 0.00 0.00 0.00 4.30
1720 1867 5.788533 TCCTAAATGTAAGTCTTTGGAGGGA 59.211 40.000 0.00 0.00 0.00 4.20
1721 1868 6.447084 TCCTAAATGTAAGTCTTTGGAGGGAT 59.553 38.462 0.00 0.00 0.00 3.85
1722 1869 7.036863 TCCTAAATGTAAGTCTTTGGAGGGATT 60.037 37.037 0.00 0.00 0.00 3.01
1723 1870 7.615757 CCTAAATGTAAGTCTTTGGAGGGATTT 59.384 37.037 0.00 0.00 0.00 2.17
1724 1871 7.468141 AAATGTAAGTCTTTGGAGGGATTTC 57.532 36.000 0.00 0.00 0.00 2.17
1725 1872 5.576563 TGTAAGTCTTTGGAGGGATTTCA 57.423 39.130 0.00 0.00 0.00 2.69
1726 1873 5.313712 TGTAAGTCTTTGGAGGGATTTCAC 58.686 41.667 0.00 0.00 0.00 3.18
1727 1874 4.731313 AAGTCTTTGGAGGGATTTCACT 57.269 40.909 0.00 0.00 0.00 3.41
1728 1875 5.843019 AAGTCTTTGGAGGGATTTCACTA 57.157 39.130 0.00 0.00 0.00 2.74
1729 1876 6.394345 AAGTCTTTGGAGGGATTTCACTAT 57.606 37.500 0.00 0.00 0.00 2.12
1730 1877 5.749462 AGTCTTTGGAGGGATTTCACTATG 58.251 41.667 0.00 0.00 0.00 2.23
1731 1878 5.488919 AGTCTTTGGAGGGATTTCACTATGA 59.511 40.000 0.00 0.00 0.00 2.15
1732 1879 6.012508 AGTCTTTGGAGGGATTTCACTATGAA 60.013 38.462 0.00 0.00 34.03 2.57
1733 1880 6.094186 GTCTTTGGAGGGATTTCACTATGAAC 59.906 42.308 0.00 0.00 35.89 3.18
1734 1881 4.503714 TGGAGGGATTTCACTATGAACC 57.496 45.455 0.00 0.00 35.89 3.62
1735 1882 3.849574 TGGAGGGATTTCACTATGAACCA 59.150 43.478 0.00 0.00 35.89 3.67
1736 1883 4.200092 GGAGGGATTTCACTATGAACCAC 58.800 47.826 0.00 0.00 35.89 4.16
1737 1884 3.871594 GAGGGATTTCACTATGAACCACG 59.128 47.826 0.00 0.00 35.89 4.94
1738 1885 3.263425 AGGGATTTCACTATGAACCACGT 59.737 43.478 0.00 0.00 35.89 4.49
1739 1886 4.468510 AGGGATTTCACTATGAACCACGTA 59.531 41.667 0.00 0.00 35.89 3.57
1740 1887 4.809426 GGGATTTCACTATGAACCACGTAG 59.191 45.833 0.00 0.00 42.12 3.51
1741 1888 4.809426 GGATTTCACTATGAACCACGTAGG 59.191 45.833 0.00 0.00 41.08 3.18
1742 1889 3.880047 TTCACTATGAACCACGTAGGG 57.120 47.619 8.57 0.00 43.89 3.53
1743 1890 3.090210 TCACTATGAACCACGTAGGGA 57.910 47.619 0.00 0.00 45.06 4.20
1744 1891 3.638860 TCACTATGAACCACGTAGGGAT 58.361 45.455 0.00 0.00 43.19 3.85
1745 1892 3.383505 TCACTATGAACCACGTAGGGATG 59.616 47.826 0.00 0.00 43.19 3.51
1746 1893 3.132289 CACTATGAACCACGTAGGGATGT 59.868 47.826 0.00 0.00 42.37 3.06
1747 1894 4.340097 CACTATGAACCACGTAGGGATGTA 59.660 45.833 0.00 0.00 42.37 2.29
1748 1895 5.010719 CACTATGAACCACGTAGGGATGTAT 59.989 44.000 0.00 0.00 42.37 2.29
1749 1896 3.812156 TGAACCACGTAGGGATGTATG 57.188 47.619 0.00 0.00 43.89 2.39
1750 1897 3.101437 TGAACCACGTAGGGATGTATGT 58.899 45.455 0.00 0.00 43.89 2.29
1751 1898 4.279982 TGAACCACGTAGGGATGTATGTA 58.720 43.478 0.00 0.00 43.89 2.29
1752 1899 4.340097 TGAACCACGTAGGGATGTATGTAG 59.660 45.833 0.00 0.00 43.89 2.74
1753 1900 4.174704 ACCACGTAGGGATGTATGTAGA 57.825 45.455 0.00 0.00 43.89 2.59
1754 1901 4.737578 ACCACGTAGGGATGTATGTAGAT 58.262 43.478 0.00 0.00 43.89 1.98
1755 1902 5.884322 ACCACGTAGGGATGTATGTAGATA 58.116 41.667 0.00 0.00 43.89 1.98
1756 1903 5.709164 ACCACGTAGGGATGTATGTAGATAC 59.291 44.000 3.09 3.09 43.89 2.24
1757 1904 5.708697 CCACGTAGGGATGTATGTAGATACA 59.291 44.000 14.47 14.47 46.73 2.29
1785 1932 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
1786 1933 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
1787 1934 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1788 1935 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1789 1936 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1790 1937 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1791 1938 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1792 1939 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1793 1940 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1794 1941 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1795 1942 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1796 1943 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1797 1944 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1798 1945 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1799 1946 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1800 1947 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1801 1948 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1802 1949 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
1803 1950 5.601583 TTTGCTCCGTATGTAGTCCATAA 57.398 39.130 0.00 0.00 37.77 1.90
1804 1951 5.801531 TTGCTCCGTATGTAGTCCATAAT 57.198 39.130 0.00 0.00 37.77 1.28
1805 1952 5.134202 TGCTCCGTATGTAGTCCATAATG 57.866 43.478 0.00 0.00 37.77 1.90
1806 1953 4.830600 TGCTCCGTATGTAGTCCATAATGA 59.169 41.667 0.00 0.00 37.77 2.57
1807 1954 5.303333 TGCTCCGTATGTAGTCCATAATGAA 59.697 40.000 0.00 0.00 37.77 2.57
1808 1955 6.183360 TGCTCCGTATGTAGTCCATAATGAAA 60.183 38.462 0.00 0.00 37.77 2.69
1809 1956 6.874134 GCTCCGTATGTAGTCCATAATGAAAT 59.126 38.462 0.00 0.00 37.77 2.17
1810 1957 7.063544 GCTCCGTATGTAGTCCATAATGAAATC 59.936 40.741 0.00 0.00 37.77 2.17
1811 1958 8.190326 TCCGTATGTAGTCCATAATGAAATCT 57.810 34.615 0.00 0.00 37.77 2.40
1812 1959 8.304596 TCCGTATGTAGTCCATAATGAAATCTC 58.695 37.037 0.00 0.00 37.77 2.75
1813 1960 8.307483 CCGTATGTAGTCCATAATGAAATCTCT 58.693 37.037 0.00 0.00 37.77 3.10
1843 1990 9.868160 AAAACTTATATTTAGGAATGGAGGGAG 57.132 33.333 0.00 0.00 0.00 4.30
1844 1991 8.582891 AACTTATATTTAGGAATGGAGGGAGT 57.417 34.615 0.00 0.00 0.00 3.85
1845 1992 9.684702 AACTTATATTTAGGAATGGAGGGAGTA 57.315 33.333 0.00 0.00 0.00 2.59
1846 1993 9.860393 ACTTATATTTAGGAATGGAGGGAGTAT 57.140 33.333 0.00 0.00 0.00 2.12
1850 1997 6.996180 TTTAGGAATGGAGGGAGTATACAG 57.004 41.667 5.50 0.00 0.00 2.74
1851 1998 4.561254 AGGAATGGAGGGAGTATACAGT 57.439 45.455 5.50 0.00 0.00 3.55
1852 1999 5.681494 AGGAATGGAGGGAGTATACAGTA 57.319 43.478 5.50 0.00 0.00 2.74
1856 2003 6.433716 GGAATGGAGGGAGTATACAGTAGTAC 59.566 46.154 5.50 0.00 31.96 2.73
1904 2053 2.825861 AAGTTTTCTTACTCCGCCGA 57.174 45.000 0.00 0.00 38.51 5.54
1906 2055 2.889852 AGTTTTCTTACTCCGCCGATC 58.110 47.619 0.00 0.00 0.00 3.69
1907 2056 1.931841 GTTTTCTTACTCCGCCGATCC 59.068 52.381 0.00 0.00 0.00 3.36
2062 2211 1.072505 AACACCAGGGATTTCGCGT 59.927 52.632 5.77 0.00 0.00 6.01
2067 2216 1.736645 CAGGGATTTCGCGTCGTGT 60.737 57.895 5.77 0.00 0.00 4.49
2203 2352 0.896479 TCATCGACAACAGGACCCGA 60.896 55.000 0.00 0.00 0.00 5.14
2215 2364 2.297597 CAGGACCCGATCTGACCTAATC 59.702 54.545 3.55 0.00 33.11 1.75
2235 2384 7.970614 CCTAATCATTGAAGGCAAAGAAAGTAC 59.029 37.037 0.00 0.00 35.61 2.73
2257 2406 5.643664 ACGACATACACATGTACAACGTAT 58.356 37.500 0.00 4.59 45.58 3.06
2258 2407 6.784176 ACGACATACACATGTACAACGTATA 58.216 36.000 0.00 0.00 45.58 1.47
2259 2408 6.908820 ACGACATACACATGTACAACGTATAG 59.091 38.462 0.00 5.40 45.58 1.31
2260 2409 6.908820 CGACATACACATGTACAACGTATAGT 59.091 38.462 0.00 8.11 45.58 2.12
2261 2410 8.063630 CGACATACACATGTACAACGTATAGTA 58.936 37.037 0.00 0.34 45.58 1.82
2262 2411 9.888878 GACATACACATGTACAACGTATAGTAT 57.111 33.333 0.00 2.62 45.58 2.12
2307 2456 2.390599 GCCGTGCATTGCGAGAGAA 61.391 57.895 3.84 0.00 0.00 2.87
2375 2524 7.584108 TGTGTGTGTTTTATTGAGCTTATCAG 58.416 34.615 0.00 0.00 39.68 2.90
2453 2607 3.008813 AGGTGATCTTGCTCACATGTTCT 59.991 43.478 0.00 0.00 45.95 3.01
2454 2608 3.755378 GGTGATCTTGCTCACATGTTCTT 59.245 43.478 0.00 0.00 45.95 2.52
2455 2609 4.217118 GGTGATCTTGCTCACATGTTCTTT 59.783 41.667 0.00 0.00 45.95 2.52
2456 2610 5.278660 GGTGATCTTGCTCACATGTTCTTTT 60.279 40.000 0.00 0.00 45.95 2.27
2457 2611 6.211515 GTGATCTTGCTCACATGTTCTTTTT 58.788 36.000 0.00 0.00 44.03 1.94
2480 2634 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
2482 2636 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
2483 2637 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
2484 2638 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
2485 2639 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
2486 2640 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
2487 2641 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
2488 2642 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
2489 2643 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
2490 2644 0.179100 ACAGACGCAAGCGCTCATAT 60.179 50.000 12.06 0.00 44.19 1.78
2491 2645 1.067060 ACAGACGCAAGCGCTCATATA 59.933 47.619 12.06 0.00 44.19 0.86
2492 2646 1.453524 CAGACGCAAGCGCTCATATAC 59.546 52.381 12.06 1.00 44.19 1.47
2493 2647 1.067060 AGACGCAAGCGCTCATATACA 59.933 47.619 12.06 0.00 44.19 2.29
2494 2648 1.190323 GACGCAAGCGCTCATATACAC 59.810 52.381 12.06 0.00 44.19 2.90
2495 2649 0.159554 CGCAAGCGCTCATATACACG 59.840 55.000 12.06 2.00 35.30 4.49
2499 2653 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
2500 2654 1.482955 CGCTCATATACACGCGCAC 59.517 57.895 5.73 0.00 39.11 5.34
2501 2655 1.206115 CGCTCATATACACGCGCACA 61.206 55.000 5.73 0.00 39.11 4.57
2502 2656 0.229753 GCTCATATACACGCGCACAC 59.770 55.000 5.73 0.00 0.00 3.82
2503 2657 1.555477 CTCATATACACGCGCACACA 58.445 50.000 5.73 0.00 0.00 3.72
2504 2658 1.255342 CTCATATACACGCGCACACAC 59.745 52.381 5.73 0.00 0.00 3.82
2505 2659 1.135228 TCATATACACGCGCACACACT 60.135 47.619 5.73 0.00 0.00 3.55
2506 2660 1.255342 CATATACACGCGCACACACTC 59.745 52.381 5.73 0.00 0.00 3.51
2507 2661 0.241481 TATACACGCGCACACACTCA 59.759 50.000 5.73 0.00 0.00 3.41
2508 2662 1.282248 ATACACGCGCACACACTCAC 61.282 55.000 5.73 0.00 0.00 3.51
2509 2663 4.000557 CACGCGCACACACTCACC 62.001 66.667 5.73 0.00 0.00 4.02
2512 2666 4.626081 GCGCACACACTCACCCCT 62.626 66.667 0.30 0.00 0.00 4.79
2513 2667 3.056458 CGCACACACTCACCCCTA 58.944 61.111 0.00 0.00 0.00 3.53
2514 2668 1.596934 CGCACACACTCACCCCTAT 59.403 57.895 0.00 0.00 0.00 2.57
2515 2669 0.740868 CGCACACACTCACCCCTATG 60.741 60.000 0.00 0.00 0.00 2.23
2516 2670 0.613260 GCACACACTCACCCCTATGA 59.387 55.000 0.00 0.00 0.00 2.15
2517 2671 1.003118 GCACACACTCACCCCTATGAA 59.997 52.381 0.00 0.00 0.00 2.57
2518 2672 2.699954 CACACACTCACCCCTATGAAC 58.300 52.381 0.00 0.00 0.00 3.18
2519 2673 1.275291 ACACACTCACCCCTATGAACG 59.725 52.381 0.00 0.00 0.00 3.95
2520 2674 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
2521 2675 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
2522 2676 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
2523 2677 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
2524 2678 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
2525 2679 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
2526 2680 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
2527 2681 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
2528 2682 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
2529 2683 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
2530 2684 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
2531 2685 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
2532 2686 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
2533 2687 1.438710 GAACGCACACACGCACATC 60.439 57.895 0.00 0.00 36.19 3.06
2534 2688 2.764251 GAACGCACACACGCACATCC 62.764 60.000 0.00 0.00 36.19 3.51
2535 2689 3.043713 CGCACACACGCACATCCT 61.044 61.111 0.00 0.00 0.00 3.24
2536 2690 1.736282 CGCACACACGCACATCCTA 60.736 57.895 0.00 0.00 0.00 2.94
2537 2691 1.083806 CGCACACACGCACATCCTAT 61.084 55.000 0.00 0.00 0.00 2.57
2538 2692 1.086696 GCACACACGCACATCCTATT 58.913 50.000 0.00 0.00 0.00 1.73
2539 2693 1.062587 GCACACACGCACATCCTATTC 59.937 52.381 0.00 0.00 0.00 1.75
2540 2694 1.665679 CACACACGCACATCCTATTCC 59.334 52.381 0.00 0.00 0.00 3.01
2541 2695 1.555075 ACACACGCACATCCTATTCCT 59.445 47.619 0.00 0.00 0.00 3.36
2542 2696 2.764010 ACACACGCACATCCTATTCCTA 59.236 45.455 0.00 0.00 0.00 2.94
2543 2697 3.388024 ACACACGCACATCCTATTCCTAT 59.612 43.478 0.00 0.00 0.00 2.57
2544 2698 3.742882 CACACGCACATCCTATTCCTATG 59.257 47.826 0.00 0.00 0.00 2.23
2545 2699 3.641436 ACACGCACATCCTATTCCTATGA 59.359 43.478 0.00 0.00 0.00 2.15
2546 2700 4.240888 CACGCACATCCTATTCCTATGAG 58.759 47.826 0.00 0.00 0.00 2.90
2547 2701 3.257393 CGCACATCCTATTCCTATGAGC 58.743 50.000 0.00 0.00 34.95 4.26
2548 2702 3.306294 CGCACATCCTATTCCTATGAGCA 60.306 47.826 0.00 0.00 37.14 4.26
2549 2703 4.622457 CGCACATCCTATTCCTATGAGCAT 60.622 45.833 0.00 0.00 37.14 3.79
2550 2704 4.874966 GCACATCCTATTCCTATGAGCATC 59.125 45.833 0.00 0.00 37.23 3.91
2551 2705 5.338219 GCACATCCTATTCCTATGAGCATCT 60.338 44.000 0.00 0.00 37.23 2.90
2552 2706 6.339730 CACATCCTATTCCTATGAGCATCTC 58.660 44.000 0.00 0.00 34.92 2.75
2553 2707 5.424895 ACATCCTATTCCTATGAGCATCTCC 59.575 44.000 0.00 0.00 34.92 3.71
2554 2708 5.282436 TCCTATTCCTATGAGCATCTCCT 57.718 43.478 0.00 0.00 34.92 3.69
2555 2709 5.268387 TCCTATTCCTATGAGCATCTCCTC 58.732 45.833 0.00 0.00 34.92 3.71
2556 2710 4.405358 CCTATTCCTATGAGCATCTCCTCC 59.595 50.000 0.00 0.00 34.92 4.30
2557 2711 3.627041 TTCCTATGAGCATCTCCTCCT 57.373 47.619 0.00 0.00 34.92 3.69
2558 2712 3.168035 TCCTATGAGCATCTCCTCCTC 57.832 52.381 0.00 0.00 34.92 3.71
2559 2713 2.178580 CCTATGAGCATCTCCTCCTCC 58.821 57.143 0.00 0.00 34.92 4.30
2560 2714 2.178580 CTATGAGCATCTCCTCCTCCC 58.821 57.143 0.00 0.00 34.92 4.30
2561 2715 0.267054 ATGAGCATCTCCTCCTCCCA 59.733 55.000 0.00 0.00 34.92 4.37
2562 2716 0.689080 TGAGCATCTCCTCCTCCCAC 60.689 60.000 0.00 0.00 34.92 4.61
2563 2717 0.398381 GAGCATCTCCTCCTCCCACT 60.398 60.000 0.00 0.00 0.00 4.00
2564 2718 0.690411 AGCATCTCCTCCTCCCACTG 60.690 60.000 0.00 0.00 0.00 3.66
2565 2719 0.689080 GCATCTCCTCCTCCCACTGA 60.689 60.000 0.00 0.00 0.00 3.41
2566 2720 1.871418 CATCTCCTCCTCCCACTGAA 58.129 55.000 0.00 0.00 0.00 3.02
2567 2721 2.406559 CATCTCCTCCTCCCACTGAAT 58.593 52.381 0.00 0.00 0.00 2.57
2568 2722 1.871418 TCTCCTCCTCCCACTGAATG 58.129 55.000 0.00 0.00 0.00 2.67
2569 2723 0.179936 CTCCTCCTCCCACTGAATGC 59.820 60.000 0.00 0.00 0.00 3.56
2570 2724 1.153289 CCTCCTCCCACTGAATGCG 60.153 63.158 0.00 0.00 0.00 4.73
2571 2725 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
2572 2726 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
2573 2727 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
2574 2728 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
2575 2729 0.745486 CTCCCACTGAATGCGCATCA 60.745 55.000 25.53 20.60 0.00 3.07
2576 2730 1.026182 TCCCACTGAATGCGCATCAC 61.026 55.000 25.53 20.34 0.00 3.06
2577 2731 1.430632 CCACTGAATGCGCATCACC 59.569 57.895 25.53 16.03 0.00 4.02
2578 2732 1.061411 CACTGAATGCGCATCACCG 59.939 57.895 25.53 18.28 0.00 4.94
2579 2733 2.108514 ACTGAATGCGCATCACCGG 61.109 57.895 25.53 21.21 0.00 5.28
2580 2734 1.815003 CTGAATGCGCATCACCGGA 60.815 57.895 25.53 4.80 0.00 5.14
2581 2735 1.368345 CTGAATGCGCATCACCGGAA 61.368 55.000 25.53 4.46 30.90 4.30
2582 2736 0.957888 TGAATGCGCATCACCGGAAA 60.958 50.000 25.53 2.10 30.90 3.13
2583 2737 0.381801 GAATGCGCATCACCGGAAAT 59.618 50.000 25.53 3.87 30.90 2.17
2584 2738 0.381801 AATGCGCATCACCGGAAATC 59.618 50.000 25.53 0.00 30.90 2.17
2585 2739 1.447317 ATGCGCATCACCGGAAATCC 61.447 55.000 19.28 0.00 30.90 3.01
2586 2740 1.819632 GCGCATCACCGGAAATCCT 60.820 57.895 9.46 0.00 0.00 3.24
2587 2741 2.016961 CGCATCACCGGAAATCCTG 58.983 57.895 9.46 0.00 0.00 3.86
2588 2742 0.461870 CGCATCACCGGAAATCCTGA 60.462 55.000 9.46 0.00 0.00 3.86
2589 2743 1.750193 GCATCACCGGAAATCCTGAA 58.250 50.000 9.46 0.00 0.00 3.02
2590 2744 2.091541 GCATCACCGGAAATCCTGAAA 58.908 47.619 9.46 0.00 0.00 2.69
2591 2745 2.689983 GCATCACCGGAAATCCTGAAAT 59.310 45.455 9.46 0.00 0.00 2.17
2592 2746 3.882888 GCATCACCGGAAATCCTGAAATA 59.117 43.478 9.46 0.00 0.00 1.40
2593 2747 4.338118 GCATCACCGGAAATCCTGAAATAA 59.662 41.667 9.46 0.00 0.00 1.40
2594 2748 5.163561 GCATCACCGGAAATCCTGAAATAAA 60.164 40.000 9.46 0.00 0.00 1.40
2595 2749 6.461509 GCATCACCGGAAATCCTGAAATAAAT 60.462 38.462 9.46 0.00 0.00 1.40
2596 2750 6.693315 TCACCGGAAATCCTGAAATAAATC 57.307 37.500 9.46 0.00 0.00 2.17
2597 2751 5.592688 TCACCGGAAATCCTGAAATAAATCC 59.407 40.000 9.46 0.00 0.00 3.01
2598 2752 5.359576 CACCGGAAATCCTGAAATAAATCCA 59.640 40.000 9.46 0.00 0.00 3.41
2599 2753 5.955355 ACCGGAAATCCTGAAATAAATCCAA 59.045 36.000 9.46 0.00 0.00 3.53
2600 2754 6.096846 ACCGGAAATCCTGAAATAAATCCAAG 59.903 38.462 9.46 0.00 0.00 3.61
2601 2755 6.321181 CCGGAAATCCTGAAATAAATCCAAGA 59.679 38.462 0.00 0.00 0.00 3.02
2602 2756 7.147915 CCGGAAATCCTGAAATAAATCCAAGAA 60.148 37.037 0.00 0.00 0.00 2.52
2603 2757 8.416329 CGGAAATCCTGAAATAAATCCAAGAAT 58.584 33.333 0.00 0.00 0.00 2.40
2610 2764 8.971321 CCTGAAATAAATCCAAGAATAAATGCG 58.029 33.333 0.00 0.00 0.00 4.73
2611 2765 9.734620 CTGAAATAAATCCAAGAATAAATGCGA 57.265 29.630 0.00 0.00 0.00 5.10
2612 2766 9.734620 TGAAATAAATCCAAGAATAAATGCGAG 57.265 29.630 0.00 0.00 0.00 5.03
2613 2767 8.579682 AAATAAATCCAAGAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
2614 2768 5.581126 AAATCCAAGAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
2615 2769 4.558538 ATCCAAGAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
2616 2770 2.682856 TCCAAGAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
2617 2771 2.423185 CCAAGAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
2618 2772 3.488047 CCAAGAATAAATGCGAGCACCAG 60.488 47.826 0.00 0.00 0.00 4.00
2619 2773 2.292267 AGAATAAATGCGAGCACCAGG 58.708 47.619 0.00 0.00 0.00 4.45
2620 2774 2.092968 AGAATAAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
2621 2775 2.645838 ATAAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
2622 2776 2.418368 TAAATGCGAGCACCAGGATT 57.582 45.000 0.00 0.00 0.00 3.01
2623 2777 1.549203 AAATGCGAGCACCAGGATTT 58.451 45.000 0.00 0.00 34.37 2.17
2624 2778 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
2625 2779 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
2626 2780 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
2627 2781 0.169009 GCGAGCACCAGGATTTGAAC 59.831 55.000 0.00 0.00 0.00 3.18
2628 2782 0.804989 CGAGCACCAGGATTTGAACC 59.195 55.000 0.00 0.00 0.00 3.62
2629 2783 1.177401 GAGCACCAGGATTTGAACCC 58.823 55.000 0.00 0.00 0.00 4.11
2630 2784 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
2635 2789 1.549203 CAGGATTTGAACCCTGGTGG 58.451 55.000 0.00 0.00 44.68 4.61
2645 2799 4.399764 CCTGGTGGGCTGGAGATA 57.600 61.111 0.00 0.00 0.00 1.98
2646 2800 1.832912 CCTGGTGGGCTGGAGATAC 59.167 63.158 0.00 0.00 0.00 2.24
2647 2801 1.700042 CCTGGTGGGCTGGAGATACC 61.700 65.000 0.00 0.00 39.54 2.73
2650 2804 4.908333 TGGGCTGGAGATACCACA 57.092 55.556 0.00 0.00 44.64 4.17
2651 2805 3.096852 TGGGCTGGAGATACCACAA 57.903 52.632 0.00 0.00 44.64 3.33
2652 2806 1.595311 TGGGCTGGAGATACCACAAT 58.405 50.000 0.00 0.00 44.64 2.71
2653 2807 1.490490 TGGGCTGGAGATACCACAATC 59.510 52.381 0.00 0.00 44.64 2.67
2654 2808 1.202818 GGGCTGGAGATACCACAATCC 60.203 57.143 0.00 0.00 44.64 3.01
2655 2809 1.202818 GGCTGGAGATACCACAATCCC 60.203 57.143 0.00 0.00 44.64 3.85
2656 2810 1.771255 GCTGGAGATACCACAATCCCT 59.229 52.381 0.00 0.00 44.64 4.20
2657 2811 2.224402 GCTGGAGATACCACAATCCCTC 60.224 54.545 0.00 0.00 44.64 4.30
2658 2812 3.312890 CTGGAGATACCACAATCCCTCT 58.687 50.000 0.00 0.00 44.64 3.69
2659 2813 4.483950 CTGGAGATACCACAATCCCTCTA 58.516 47.826 0.00 0.00 44.64 2.43
2660 2814 4.890988 TGGAGATACCACAATCCCTCTAA 58.109 43.478 0.00 0.00 44.64 2.10
2661 2815 4.654262 TGGAGATACCACAATCCCTCTAAC 59.346 45.833 0.00 0.00 44.64 2.34
2662 2816 4.040584 GGAGATACCACAATCCCTCTAACC 59.959 50.000 0.00 0.00 38.79 2.85
2663 2817 4.631234 AGATACCACAATCCCTCTAACCA 58.369 43.478 0.00 0.00 0.00 3.67
2664 2818 5.227593 AGATACCACAATCCCTCTAACCAT 58.772 41.667 0.00 0.00 0.00 3.55
2665 2819 3.933861 ACCACAATCCCTCTAACCATC 57.066 47.619 0.00 0.00 0.00 3.51
2666 2820 2.509964 ACCACAATCCCTCTAACCATCC 59.490 50.000 0.00 0.00 0.00 3.51
2667 2821 2.509548 CCACAATCCCTCTAACCATCCA 59.490 50.000 0.00 0.00 0.00 3.41
2668 2822 3.053693 CCACAATCCCTCTAACCATCCAA 60.054 47.826 0.00 0.00 0.00 3.53
2669 2823 3.947834 CACAATCCCTCTAACCATCCAAC 59.052 47.826 0.00 0.00 0.00 3.77
2670 2824 3.053619 ACAATCCCTCTAACCATCCAACC 60.054 47.826 0.00 0.00 0.00 3.77
2671 2825 2.352561 TCCCTCTAACCATCCAACCA 57.647 50.000 0.00 0.00 0.00 3.67
2672 2826 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
2673 2827 1.633432 CCCTCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
2674 2828 2.356125 CCCTCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
2675 2829 2.356125 CCTCTAACCATCCAACCACAGG 60.356 54.545 0.00 0.00 0.00 4.00
2676 2830 2.305927 CTCTAACCATCCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
2686 2840 3.343972 CCACAGGTTGGTTCGCTG 58.656 61.111 0.00 0.00 41.10 5.18
2687 2841 2.639286 CACAGGTTGGTTCGCTGC 59.361 61.111 0.00 0.00 0.00 5.25
2688 2842 1.893808 CACAGGTTGGTTCGCTGCT 60.894 57.895 0.00 0.00 0.00 4.24
2689 2843 1.598130 ACAGGTTGGTTCGCTGCTC 60.598 57.895 0.00 0.00 0.00 4.26
2690 2844 1.597854 CAGGTTGGTTCGCTGCTCA 60.598 57.895 0.00 0.00 0.00 4.26
2691 2845 1.598130 AGGTTGGTTCGCTGCTCAC 60.598 57.895 0.00 0.00 0.00 3.51
2692 2846 1.891919 GGTTGGTTCGCTGCTCACA 60.892 57.895 0.00 0.00 0.00 3.58
2693 2847 1.237285 GGTTGGTTCGCTGCTCACAT 61.237 55.000 0.00 0.00 0.00 3.21
2694 2848 0.110056 GTTGGTTCGCTGCTCACATG 60.110 55.000 0.00 0.00 0.00 3.21
2695 2849 0.534877 TTGGTTCGCTGCTCACATGT 60.535 50.000 0.00 0.00 0.00 3.21
2696 2850 0.534877 TGGTTCGCTGCTCACATGTT 60.535 50.000 0.00 0.00 0.00 2.71
2697 2851 0.166814 GGTTCGCTGCTCACATGTTC 59.833 55.000 0.00 0.00 0.00 3.18
2711 2865 6.479972 TCACATGTTCGGTATATCTCCTTT 57.520 37.500 0.00 0.00 0.00 3.11
2712 2866 6.884832 TCACATGTTCGGTATATCTCCTTTT 58.115 36.000 0.00 0.00 0.00 2.27
2717 2871 5.105635 TGTTCGGTATATCTCCTTTTCACGT 60.106 40.000 0.00 0.00 0.00 4.49
2813 4795 3.340337 CATGCAAGCATGTCATCTCAG 57.660 47.619 23.25 0.00 46.20 3.35
2825 4807 4.329392 TGTCATCTCAGCATTCAACATGT 58.671 39.130 0.00 0.00 0.00 3.21
2829 4811 5.529800 TCATCTCAGCATTCAACATGTATGG 59.470 40.000 0.00 0.00 0.00 2.74
2830 4812 5.101648 TCTCAGCATTCAACATGTATGGA 57.898 39.130 0.00 0.00 0.00 3.41
2859 4841 2.028203 TCATCTCAACTTGCGACCATGA 60.028 45.455 0.00 0.00 0.00 3.07
3042 5399 6.700960 TCAAAATATTCTTGCAACAAGGTGTG 59.299 34.615 7.44 0.00 0.00 3.82
3043 5400 2.514205 ATTCTTGCAACAAGGTGTGC 57.486 45.000 7.44 0.00 0.00 4.57
3075 5432 8.154856 AGTTACATAAAGTTGTGAGCTTAAGGA 58.845 33.333 4.29 0.00 0.00 3.36
3090 5447 6.049790 AGCTTAAGGACATTTCTAACCGATC 58.950 40.000 4.29 0.00 0.00 3.69
3111 5468 6.461231 CGATCCCCTAAAAGTTAGTGGAGTAG 60.461 46.154 5.63 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.737054 CTCCTGTGTCAAAATAATGCACC 58.263 43.478 0.00 0.00 31.01 5.01
1 2 4.168760 GCTCCTGTGTCAAAATAATGCAC 58.831 43.478 0.00 0.00 0.00 4.57
12 13 4.574674 AAATCTTATGGCTCCTGTGTCA 57.425 40.909 0.00 0.00 0.00 3.58
52 53 3.636679 CTGCCTAGGCCTAGCTATATCA 58.363 50.000 31.33 18.93 41.09 2.15
117 118 9.534565 TTTCTAATGACTACTATGCTAAGCAAG 57.465 33.333 0.00 0.00 43.62 4.01
362 365 7.361116 CGGAGGAAGTACTAGCTTATTACTAGC 60.361 44.444 0.00 0.00 40.70 3.42
363 366 7.661027 ACGGAGGAAGTACTAGCTTATTACTAG 59.339 40.741 0.00 0.00 42.37 2.57
364 367 7.512992 ACGGAGGAAGTACTAGCTTATTACTA 58.487 38.462 0.00 0.00 0.00 1.82
365 368 6.363882 ACGGAGGAAGTACTAGCTTATTACT 58.636 40.000 0.00 0.00 0.00 2.24
366 369 6.631971 ACGGAGGAAGTACTAGCTTATTAC 57.368 41.667 0.00 0.00 0.00 1.89
367 370 7.013083 CAGAACGGAGGAAGTACTAGCTTATTA 59.987 40.741 0.00 0.00 0.00 0.98
368 371 5.892686 AGAACGGAGGAAGTACTAGCTTATT 59.107 40.000 0.00 0.00 0.00 1.40
369 372 5.299782 CAGAACGGAGGAAGTACTAGCTTAT 59.700 44.000 0.00 0.00 0.00 1.73
370 373 4.639310 CAGAACGGAGGAAGTACTAGCTTA 59.361 45.833 0.00 0.00 0.00 3.09
371 374 3.444388 CAGAACGGAGGAAGTACTAGCTT 59.556 47.826 0.00 0.00 0.00 3.74
372 375 3.018149 CAGAACGGAGGAAGTACTAGCT 58.982 50.000 0.00 0.00 0.00 3.32
373 376 3.015327 TCAGAACGGAGGAAGTACTAGC 58.985 50.000 0.00 0.00 0.00 3.42
374 377 5.838531 ATTCAGAACGGAGGAAGTACTAG 57.161 43.478 0.00 0.00 0.00 2.57
375 378 6.888632 AGTAATTCAGAACGGAGGAAGTACTA 59.111 38.462 15.02 0.00 45.21 1.82
376 379 5.715753 AGTAATTCAGAACGGAGGAAGTACT 59.284 40.000 12.45 12.45 43.47 2.73
377 380 5.963594 AGTAATTCAGAACGGAGGAAGTAC 58.036 41.667 0.00 0.00 40.45 2.73
378 381 6.014840 ACAAGTAATTCAGAACGGAGGAAGTA 60.015 38.462 0.00 0.00 0.00 2.24
379 382 5.221661 ACAAGTAATTCAGAACGGAGGAAGT 60.222 40.000 0.00 0.00 0.00 3.01
380 383 5.238583 ACAAGTAATTCAGAACGGAGGAAG 58.761 41.667 0.00 0.00 0.00 3.46
381 384 5.011738 AGACAAGTAATTCAGAACGGAGGAA 59.988 40.000 0.00 0.00 0.00 3.36
382 385 4.527038 AGACAAGTAATTCAGAACGGAGGA 59.473 41.667 0.00 0.00 0.00 3.71
383 386 4.822026 AGACAAGTAATTCAGAACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
384 387 5.120830 CCAAGACAAGTAATTCAGAACGGAG 59.879 44.000 0.00 0.00 0.00 4.63
385 388 4.994852 CCAAGACAAGTAATTCAGAACGGA 59.005 41.667 0.00 0.00 0.00 4.69
386 389 4.994852 TCCAAGACAAGTAATTCAGAACGG 59.005 41.667 0.00 0.00 0.00 4.44
387 390 6.727824 ATCCAAGACAAGTAATTCAGAACG 57.272 37.500 0.00 0.00 0.00 3.95
388 391 8.352942 ACAAATCCAAGACAAGTAATTCAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
389 392 8.463930 ACAAATCCAAGACAAGTAATTCAGAA 57.536 30.769 0.00 0.00 0.00 3.02
390 393 7.939039 AGACAAATCCAAGACAAGTAATTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
391 394 8.103948 AGACAAATCCAAGACAAGTAATTCAG 57.896 34.615 0.00 0.00 0.00 3.02
392 395 9.219603 CTAGACAAATCCAAGACAAGTAATTCA 57.780 33.333 0.00 0.00 0.00 2.57
393 396 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
394 397 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
396 399 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
397 400 9.031537 TGTATCTAGACAAATCCAAGACAAGTA 57.968 33.333 0.00 0.00 0.00 2.24
398 401 7.907389 TGTATCTAGACAAATCCAAGACAAGT 58.093 34.615 0.00 0.00 0.00 3.16
399 402 8.253810 TCTGTATCTAGACAAATCCAAGACAAG 58.746 37.037 0.00 0.00 0.00 3.16
400 403 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
401 404 7.718334 TCTGTATCTAGACAAATCCAAGACA 57.282 36.000 0.00 0.00 0.00 3.41
402 405 8.200792 ACATCTGTATCTAGACAAATCCAAGAC 58.799 37.037 0.00 0.00 0.00 3.01
403 406 8.311395 ACATCTGTATCTAGACAAATCCAAGA 57.689 34.615 0.00 0.00 0.00 3.02
433 436 8.364142 GGATGTATCTAGCACTAAAATGAGTCT 58.636 37.037 0.00 0.00 0.00 3.24
434 437 7.327275 CGGATGTATCTAGCACTAAAATGAGTC 59.673 40.741 0.00 0.00 0.00 3.36
435 438 7.148641 CGGATGTATCTAGCACTAAAATGAGT 58.851 38.462 0.00 0.00 0.00 3.41
436 439 7.148641 ACGGATGTATCTAGCACTAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
437 440 7.050970 ACGGATGTATCTAGCACTAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
438 441 8.988064 ATACGGATGTATCTAGCACTAAAATG 57.012 34.615 0.00 0.00 36.56 2.32
469 472 9.079833 CGTTCCGAATTACTTGTCTTAGATTTA 57.920 33.333 0.00 0.00 0.00 1.40
470 473 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
471 474 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
472 475 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
473 476 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
474 477 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
475 478 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
476 479 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
477 480 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
478 481 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
479 482 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
480 483 3.241067 TCCTCCGTTCCGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
481 484 3.260128 ACTTCCTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
482 485 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
483 486 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
484 487 5.603170 ATTACTTCCTCCGTTCCGAATTA 57.397 39.130 0.00 0.00 0.00 1.40
485 488 3.967332 TTACTTCCTCCGTTCCGAATT 57.033 42.857 0.00 0.00 0.00 2.17
486 489 5.598769 CTTATTACTTCCTCCGTTCCGAAT 58.401 41.667 0.00 0.00 0.00 3.34
487 490 4.678840 GCTTATTACTTCCTCCGTTCCGAA 60.679 45.833 0.00 0.00 0.00 4.30
488 491 3.181483 GCTTATTACTTCCTCCGTTCCGA 60.181 47.826 0.00 0.00 0.00 4.55
489 492 3.121544 GCTTATTACTTCCTCCGTTCCG 58.878 50.000 0.00 0.00 0.00 4.30
490 493 4.403585 AGCTTATTACTTCCTCCGTTCC 57.596 45.455 0.00 0.00 0.00 3.62
491 494 6.146601 ACTAGCTTATTACTTCCTCCGTTC 57.853 41.667 0.00 0.00 0.00 3.95
492 495 7.651027 TTACTAGCTTATTACTTCCTCCGTT 57.349 36.000 0.00 0.00 0.00 4.44
493 496 7.836479 ATTACTAGCTTATTACTTCCTCCGT 57.164 36.000 0.00 0.00 0.00 4.69
494 497 9.843334 CTTATTACTAGCTTATTACTTCCTCCG 57.157 37.037 0.00 0.00 0.00 4.63
531 534 5.105917 TGTTTTCCGTTCTGCTTTCTTTCTT 60.106 36.000 0.00 0.00 0.00 2.52
538 541 3.132111 ACCATTGTTTTCCGTTCTGCTTT 59.868 39.130 0.00 0.00 0.00 3.51
539 542 2.693074 ACCATTGTTTTCCGTTCTGCTT 59.307 40.909 0.00 0.00 0.00 3.91
540 543 2.034558 CACCATTGTTTTCCGTTCTGCT 59.965 45.455 0.00 0.00 0.00 4.24
541 544 2.223711 ACACCATTGTTTTCCGTTCTGC 60.224 45.455 0.00 0.00 28.43 4.26
547 550 1.269448 CCTGGACACCATTGTTTTCCG 59.731 52.381 0.00 0.00 35.47 4.30
701 709 1.378531 TCCAGTTACGGATGCAATGC 58.621 50.000 0.00 0.00 0.00 3.56
776 784 4.899352 AATCCTCTGGGCATAGACATAC 57.101 45.455 0.00 0.00 0.00 2.39
976 984 0.528684 GGCTCGATCGGAAGACTTGG 60.529 60.000 16.41 0.00 46.97 3.61
1192 1200 1.135083 ACTCACCAGCGTGTATAGTGC 60.135 52.381 0.00 0.00 41.09 4.40
1270 1285 2.375766 GGAGCAGCAACGACGACAG 61.376 63.158 0.00 0.00 0.00 3.51
1307 1324 2.939103 CCTAGTAACAGAACATGGCAGC 59.061 50.000 0.00 0.00 0.00 5.25
1345 1362 1.298859 GGTTGCTTGGACTAGGTGCG 61.299 60.000 0.00 0.00 0.00 5.34
1394 1411 2.094894 TCGAGCTTAGCACGTACAGTAC 59.905 50.000 21.65 0.00 42.61 2.73
1395 1412 2.349590 TCGAGCTTAGCACGTACAGTA 58.650 47.619 21.65 0.61 42.61 2.74
1396 1413 1.130749 CTCGAGCTTAGCACGTACAGT 59.869 52.381 21.65 0.00 42.61 3.55
1397 1414 1.816370 CTCGAGCTTAGCACGTACAG 58.184 55.000 21.65 9.87 42.61 2.74
1398 1415 0.179171 GCTCGAGCTTAGCACGTACA 60.179 55.000 29.88 4.08 42.61 2.90
1480 1531 6.074088 GCGTATTTGTGTTAGGAGATGATGAG 60.074 42.308 0.00 0.00 0.00 2.90
1613 1760 1.871772 CAGCAGCTGGTTAGTGCAC 59.128 57.895 17.45 9.40 39.80 4.57
1683 1830 4.296056 ACATTTAGGAACGGAGGGAGTAT 58.704 43.478 0.00 0.00 0.00 2.12
1686 1833 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
1688 1835 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
1690 1837 6.092259 CCAAAGACTTACATTTAGGAACGGAG 59.908 42.308 0.00 0.00 0.00 4.63
1691 1838 5.935789 CCAAAGACTTACATTTAGGAACGGA 59.064 40.000 0.00 0.00 0.00 4.69
1692 1839 5.935789 TCCAAAGACTTACATTTAGGAACGG 59.064 40.000 0.00 0.00 0.00 4.44
1693 1840 6.092259 CCTCCAAAGACTTACATTTAGGAACG 59.908 42.308 0.00 0.00 0.00 3.95
1694 1841 6.374613 CCCTCCAAAGACTTACATTTAGGAAC 59.625 42.308 0.00 0.00 0.00 3.62
1695 1842 6.273730 TCCCTCCAAAGACTTACATTTAGGAA 59.726 38.462 0.00 0.00 0.00 3.36
1696 1843 5.788533 TCCCTCCAAAGACTTACATTTAGGA 59.211 40.000 0.00 0.00 0.00 2.94
1697 1844 6.062258 TCCCTCCAAAGACTTACATTTAGG 57.938 41.667 0.00 0.00 0.00 2.69
1698 1845 8.581253 AAATCCCTCCAAAGACTTACATTTAG 57.419 34.615 0.00 0.00 0.00 1.85
1699 1846 8.167392 TGAAATCCCTCCAAAGACTTACATTTA 58.833 33.333 0.00 0.00 0.00 1.40
1700 1847 7.010160 TGAAATCCCTCCAAAGACTTACATTT 58.990 34.615 0.00 0.00 0.00 2.32
1701 1848 6.434340 GTGAAATCCCTCCAAAGACTTACATT 59.566 38.462 0.00 0.00 0.00 2.71
1702 1849 5.946377 GTGAAATCCCTCCAAAGACTTACAT 59.054 40.000 0.00 0.00 0.00 2.29
1703 1850 5.073144 AGTGAAATCCCTCCAAAGACTTACA 59.927 40.000 0.00 0.00 0.00 2.41
1704 1851 5.561679 AGTGAAATCCCTCCAAAGACTTAC 58.438 41.667 0.00 0.00 0.00 2.34
1705 1852 5.843019 AGTGAAATCCCTCCAAAGACTTA 57.157 39.130 0.00 0.00 0.00 2.24
1706 1853 4.731313 AGTGAAATCCCTCCAAAGACTT 57.269 40.909 0.00 0.00 0.00 3.01
1707 1854 5.488919 TCATAGTGAAATCCCTCCAAAGACT 59.511 40.000 0.00 0.00 0.00 3.24
1708 1855 5.745227 TCATAGTGAAATCCCTCCAAAGAC 58.255 41.667 0.00 0.00 0.00 3.01
1709 1856 6.180472 GTTCATAGTGAAATCCCTCCAAAGA 58.820 40.000 0.00 0.00 38.22 2.52
1710 1857 5.358160 GGTTCATAGTGAAATCCCTCCAAAG 59.642 44.000 0.00 0.00 38.22 2.77
1711 1858 5.222233 TGGTTCATAGTGAAATCCCTCCAAA 60.222 40.000 0.00 0.00 38.22 3.28
1712 1859 4.290985 TGGTTCATAGTGAAATCCCTCCAA 59.709 41.667 0.00 0.00 38.22 3.53
1713 1860 3.849574 TGGTTCATAGTGAAATCCCTCCA 59.150 43.478 0.00 0.00 38.22 3.86
1714 1861 4.200092 GTGGTTCATAGTGAAATCCCTCC 58.800 47.826 0.00 0.00 38.22 4.30
1715 1862 3.871594 CGTGGTTCATAGTGAAATCCCTC 59.128 47.826 0.00 0.00 38.22 4.30
1716 1863 3.263425 ACGTGGTTCATAGTGAAATCCCT 59.737 43.478 0.00 0.00 38.22 4.20
1717 1864 3.606687 ACGTGGTTCATAGTGAAATCCC 58.393 45.455 0.00 0.00 38.22 3.85
1718 1865 4.809426 CCTACGTGGTTCATAGTGAAATCC 59.191 45.833 0.00 0.00 38.22 3.01
1719 1866 4.809426 CCCTACGTGGTTCATAGTGAAATC 59.191 45.833 0.00 0.00 38.22 2.17
1720 1867 4.468510 TCCCTACGTGGTTCATAGTGAAAT 59.531 41.667 0.00 0.00 38.22 2.17
1721 1868 3.833650 TCCCTACGTGGTTCATAGTGAAA 59.166 43.478 0.00 0.00 38.22 2.69
1722 1869 3.433343 TCCCTACGTGGTTCATAGTGAA 58.567 45.455 0.00 0.00 33.32 3.18
1723 1870 3.090210 TCCCTACGTGGTTCATAGTGA 57.910 47.619 0.00 0.00 0.00 3.41
1724 1871 3.132289 ACATCCCTACGTGGTTCATAGTG 59.868 47.826 0.00 0.00 0.00 2.74
1725 1872 3.371965 ACATCCCTACGTGGTTCATAGT 58.628 45.455 0.00 0.00 0.00 2.12
1726 1873 5.010719 ACATACATCCCTACGTGGTTCATAG 59.989 44.000 0.00 0.00 0.00 2.23
1727 1874 4.897076 ACATACATCCCTACGTGGTTCATA 59.103 41.667 0.00 0.00 0.00 2.15
1728 1875 3.709653 ACATACATCCCTACGTGGTTCAT 59.290 43.478 0.00 0.00 0.00 2.57
1729 1876 3.101437 ACATACATCCCTACGTGGTTCA 58.899 45.455 0.00 0.00 0.00 3.18
1730 1877 3.814005 ACATACATCCCTACGTGGTTC 57.186 47.619 0.00 0.00 0.00 3.62
1731 1878 4.539726 TCTACATACATCCCTACGTGGTT 58.460 43.478 0.00 0.00 0.00 3.67
1732 1879 4.174704 TCTACATACATCCCTACGTGGT 57.825 45.455 0.00 0.00 0.00 4.16
1733 1880 5.708697 TGTATCTACATACATCCCTACGTGG 59.291 44.000 0.00 0.00 40.06 4.94
1734 1881 6.812879 TGTATCTACATACATCCCTACGTG 57.187 41.667 0.00 0.00 40.06 4.49
1765 1912 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1766 1913 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1767 1914 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1768 1915 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1769 1916 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1770 1917 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1771 1918 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1772 1919 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1773 1920 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1774 1921 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1775 1922 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1776 1923 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
1777 1924 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1778 1925 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
1779 1926 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1780 1927 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1781 1928 5.601583 TTATGGACTACATACGGAGCAAA 57.398 39.130 0.00 0.00 41.61 3.68
1782 1929 5.303333 TCATTATGGACTACATACGGAGCAA 59.697 40.000 0.00 0.00 41.61 3.91
1783 1930 4.830600 TCATTATGGACTACATACGGAGCA 59.169 41.667 0.00 0.00 41.61 4.26
1784 1931 5.386958 TCATTATGGACTACATACGGAGC 57.613 43.478 0.00 0.00 41.61 4.70
1785 1932 8.307483 AGATTTCATTATGGACTACATACGGAG 58.693 37.037 0.00 0.00 41.61 4.63
1786 1933 8.190326 AGATTTCATTATGGACTACATACGGA 57.810 34.615 0.00 0.00 41.61 4.69
1787 1934 8.307483 AGAGATTTCATTATGGACTACATACGG 58.693 37.037 0.00 0.00 41.61 4.02
1817 1964 9.868160 CTCCCTCCATTCCTAAATATAAGTTTT 57.132 33.333 0.00 0.00 0.00 2.43
1818 1965 9.015146 ACTCCCTCCATTCCTAAATATAAGTTT 57.985 33.333 0.00 0.00 0.00 2.66
1819 1966 8.582891 ACTCCCTCCATTCCTAAATATAAGTT 57.417 34.615 0.00 0.00 0.00 2.66
1820 1967 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
1824 1971 9.273137 CTGTATACTCCCTCCATTCCTAAATAT 57.727 37.037 4.17 0.00 0.00 1.28
1825 1972 8.239478 ACTGTATACTCCCTCCATTCCTAAATA 58.761 37.037 4.17 0.00 0.00 1.40
1826 1973 7.082972 ACTGTATACTCCCTCCATTCCTAAAT 58.917 38.462 4.17 0.00 0.00 1.40
1827 1974 6.449956 ACTGTATACTCCCTCCATTCCTAAA 58.550 40.000 4.17 0.00 0.00 1.85
1828 1975 6.039415 ACTGTATACTCCCTCCATTCCTAA 57.961 41.667 4.17 0.00 0.00 2.69
1829 1976 5.681494 ACTGTATACTCCCTCCATTCCTA 57.319 43.478 4.17 0.00 0.00 2.94
1830 1977 4.561254 ACTGTATACTCCCTCCATTCCT 57.439 45.455 4.17 0.00 0.00 3.36
1831 1978 5.395611 ACTACTGTATACTCCCTCCATTCC 58.604 45.833 4.17 0.00 0.00 3.01
1832 1979 7.232910 AGTACTACTGTATACTCCCTCCATTC 58.767 42.308 4.17 0.00 0.00 2.67
1833 1980 7.164233 AGTACTACTGTATACTCCCTCCATT 57.836 40.000 4.17 0.00 0.00 3.16
1834 1981 6.783517 AGTACTACTGTATACTCCCTCCAT 57.216 41.667 4.17 0.00 0.00 3.41
1835 1982 6.848631 AGTAGTACTACTGTATACTCCCTCCA 59.151 42.308 30.33 0.00 44.11 3.86
1836 1983 7.315066 AGTAGTACTACTGTATACTCCCTCC 57.685 44.000 30.33 1.77 44.11 4.30
1877 2024 6.369615 GGCGGAGTAAGAAAACTTAACACATA 59.630 38.462 0.00 0.00 0.00 2.29
1904 2053 1.182667 TCCTGACACGTTCGATGGAT 58.817 50.000 0.00 0.00 0.00 3.41
1906 2055 1.068474 GTTCCTGACACGTTCGATGG 58.932 55.000 0.00 0.00 0.00 3.51
1907 2056 1.721389 CAGTTCCTGACACGTTCGATG 59.279 52.381 0.00 0.00 32.44 3.84
1911 2060 1.068741 ACCTCAGTTCCTGACACGTTC 59.931 52.381 0.00 0.00 35.39 3.95
2062 2211 1.666553 CGCCAAGGCAGTAACACGA 60.667 57.895 12.19 0.00 42.06 4.35
2203 2352 5.378230 TGCCTTCAATGATTAGGTCAGAT 57.622 39.130 3.23 0.00 40.92 2.90
2215 2364 5.147162 GTCGTACTTTCTTTGCCTTCAATG 58.853 41.667 0.00 0.00 31.33 2.82
2235 2384 6.908820 ACTATACGTTGTACATGTGTATGTCG 59.091 38.462 9.11 8.30 44.00 4.35
2300 2449 0.043566 CAATCGCACGCATTCTCTCG 60.044 55.000 0.00 0.00 0.00 4.04
2307 2456 1.378882 ATCTTGGCAATCGCACGCAT 61.379 50.000 0.00 0.00 41.24 4.73
2351 2500 6.524586 GCTGATAAGCTCAATAAAACACACAC 59.475 38.462 0.00 0.00 32.14 3.82
2409 2558 9.778741 CACCTCAGTGTACCACAAATATTATAT 57.221 33.333 0.00 0.00 39.30 0.86
2410 2559 8.983789 TCACCTCAGTGTACCACAAATATTATA 58.016 33.333 0.00 0.00 44.83 0.98
2411 2560 7.857456 TCACCTCAGTGTACCACAAATATTAT 58.143 34.615 0.00 0.00 44.83 1.28
2421 2575 2.028112 GCAAGATCACCTCAGTGTACCA 60.028 50.000 0.00 0.00 44.83 3.25
2458 2612 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
2459 2613 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
2460 2614 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
2461 2615 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
2462 2616 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
2463 2617 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
2464 2618 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
2465 2619 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
2466 2620 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
2467 2621 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
2468 2622 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
2469 2623 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
2470 2624 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
2471 2625 0.179100 ATATGAGCGCTTGCGTCTGT 60.179 50.000 13.26 7.66 45.69 3.41
2472 2626 1.453524 GTATATGAGCGCTTGCGTCTG 59.546 52.381 13.26 0.00 45.69 3.51
2473 2627 1.067060 TGTATATGAGCGCTTGCGTCT 59.933 47.619 13.26 13.17 45.69 4.18
2474 2628 1.190323 GTGTATATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
2475 2629 1.209128 GTGTATATGAGCGCTTGCGT 58.791 50.000 13.26 3.24 45.69 5.24
2476 2630 0.159554 CGTGTATATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
2477 2631 0.111089 GCGTGTATATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
2478 2632 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
2479 2633 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
2480 2634 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
2483 2637 0.229753 GTGTGCGCGTGTATATGAGC 59.770 55.000 8.43 0.41 38.85 4.26
2484 2638 1.255342 GTGTGTGCGCGTGTATATGAG 59.745 52.381 8.43 0.00 0.00 2.90
2485 2639 1.135228 AGTGTGTGCGCGTGTATATGA 60.135 47.619 8.43 0.00 0.00 2.15
2486 2640 1.255342 GAGTGTGTGCGCGTGTATATG 59.745 52.381 8.43 0.00 0.00 1.78
2487 2641 1.135228 TGAGTGTGTGCGCGTGTATAT 60.135 47.619 8.43 0.00 0.00 0.86
2488 2642 0.241481 TGAGTGTGTGCGCGTGTATA 59.759 50.000 8.43 0.00 0.00 1.47
2489 2643 1.006688 TGAGTGTGTGCGCGTGTAT 60.007 52.632 8.43 0.00 0.00 2.29
2490 2644 1.947146 GTGAGTGTGTGCGCGTGTA 60.947 57.895 8.43 0.00 0.00 2.90
2491 2645 3.261951 GTGAGTGTGTGCGCGTGT 61.262 61.111 8.43 0.00 0.00 4.49
2492 2646 4.000557 GGTGAGTGTGTGCGCGTG 62.001 66.667 8.43 0.00 0.00 5.34
2495 2649 2.521958 ATAGGGGTGAGTGTGTGCGC 62.522 60.000 0.00 0.00 0.00 6.09
2496 2650 0.740868 CATAGGGGTGAGTGTGTGCG 60.741 60.000 0.00 0.00 0.00 5.34
2497 2651 0.613260 TCATAGGGGTGAGTGTGTGC 59.387 55.000 0.00 0.00 0.00 4.57
2498 2652 2.699954 GTTCATAGGGGTGAGTGTGTG 58.300 52.381 0.00 0.00 0.00 3.82
2499 2653 1.275291 CGTTCATAGGGGTGAGTGTGT 59.725 52.381 0.00 0.00 0.00 3.72
2500 2654 2.007049 GCGTTCATAGGGGTGAGTGTG 61.007 57.143 0.00 0.00 0.00 3.82
2501 2655 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
2502 2656 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
2503 2657 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
2504 2658 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
2505 2659 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
2506 2660 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
2507 2661 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
2508 2662 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
2509 2663 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
2510 2664 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
2511 2665 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
2512 2666 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
2513 2667 1.506309 ATGTGCGTGTGTGCGTTCAT 61.506 50.000 0.00 0.00 37.81 2.57
2514 2668 2.100024 GATGTGCGTGTGTGCGTTCA 62.100 55.000 0.00 0.00 37.81 3.18
2515 2669 1.438710 GATGTGCGTGTGTGCGTTC 60.439 57.895 0.00 0.00 37.81 3.95
2516 2670 2.631428 GATGTGCGTGTGTGCGTT 59.369 55.556 0.00 0.00 37.81 4.84
2517 2671 2.428960 TAGGATGTGCGTGTGTGCGT 62.429 55.000 0.00 0.00 37.81 5.24
2518 2672 1.083806 ATAGGATGTGCGTGTGTGCG 61.084 55.000 0.00 0.00 37.81 5.34
2519 2673 1.062587 GAATAGGATGTGCGTGTGTGC 59.937 52.381 0.00 0.00 0.00 4.57
2520 2674 1.665679 GGAATAGGATGTGCGTGTGTG 59.334 52.381 0.00 0.00 0.00 3.82
2521 2675 1.555075 AGGAATAGGATGTGCGTGTGT 59.445 47.619 0.00 0.00 0.00 3.72
2522 2676 2.315925 AGGAATAGGATGTGCGTGTG 57.684 50.000 0.00 0.00 0.00 3.82
2523 2677 3.641436 TCATAGGAATAGGATGTGCGTGT 59.359 43.478 0.00 0.00 0.00 4.49
2524 2678 4.240888 CTCATAGGAATAGGATGTGCGTG 58.759 47.826 0.00 0.00 0.00 5.34
2525 2679 3.306364 GCTCATAGGAATAGGATGTGCGT 60.306 47.826 0.00 0.00 0.00 5.24
2526 2680 3.257393 GCTCATAGGAATAGGATGTGCG 58.743 50.000 0.00 0.00 0.00 5.34
2527 2681 4.277515 TGCTCATAGGAATAGGATGTGC 57.722 45.455 0.00 0.00 33.82 4.57
2528 2682 6.297080 AGATGCTCATAGGAATAGGATGTG 57.703 41.667 0.00 0.00 0.00 3.21
2529 2683 5.424895 GGAGATGCTCATAGGAATAGGATGT 59.575 44.000 0.00 0.00 31.08 3.06
2530 2684 5.662208 AGGAGATGCTCATAGGAATAGGATG 59.338 44.000 0.00 0.00 31.08 3.51
2531 2685 5.852558 AGGAGATGCTCATAGGAATAGGAT 58.147 41.667 0.00 0.00 31.08 3.24
2532 2686 5.268387 GAGGAGATGCTCATAGGAATAGGA 58.732 45.833 0.00 0.00 31.08 2.94
2533 2687 4.405358 GGAGGAGATGCTCATAGGAATAGG 59.595 50.000 3.68 0.00 31.08 2.57
2534 2688 5.271598 AGGAGGAGATGCTCATAGGAATAG 58.728 45.833 3.68 0.00 31.08 1.73
2535 2689 5.268387 GAGGAGGAGATGCTCATAGGAATA 58.732 45.833 3.68 0.00 45.30 1.75
2536 2690 4.095946 GAGGAGGAGATGCTCATAGGAAT 58.904 47.826 3.68 0.00 45.30 3.01
2537 2691 3.505386 GAGGAGGAGATGCTCATAGGAA 58.495 50.000 3.68 0.00 45.30 3.36
2538 2692 3.168035 GAGGAGGAGATGCTCATAGGA 57.832 52.381 3.68 0.00 45.30 2.94
2544 2698 0.398381 AGTGGGAGGAGGAGATGCTC 60.398 60.000 0.00 0.00 45.25 4.26
2545 2699 0.690411 CAGTGGGAGGAGGAGATGCT 60.690 60.000 0.00 0.00 0.00 3.79
2546 2700 0.689080 TCAGTGGGAGGAGGAGATGC 60.689 60.000 0.00 0.00 0.00 3.91
2547 2701 1.871418 TTCAGTGGGAGGAGGAGATG 58.129 55.000 0.00 0.00 0.00 2.90
2548 2702 2.406559 CATTCAGTGGGAGGAGGAGAT 58.593 52.381 0.00 0.00 0.00 2.75
2549 2703 1.871418 CATTCAGTGGGAGGAGGAGA 58.129 55.000 0.00 0.00 0.00 3.71
2550 2704 0.179936 GCATTCAGTGGGAGGAGGAG 59.820 60.000 0.00 0.00 0.00 3.69
2551 2705 1.617018 CGCATTCAGTGGGAGGAGGA 61.617 60.000 0.00 0.00 43.02 3.71
2552 2706 1.153289 CGCATTCAGTGGGAGGAGG 60.153 63.158 0.00 0.00 43.02 4.30
2553 2707 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
2554 2708 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
2555 2709 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
2556 2710 0.745486 TGATGCGCATTCAGTGGGAG 60.745 55.000 26.12 0.00 43.02 4.30
2557 2711 1.026182 GTGATGCGCATTCAGTGGGA 61.026 55.000 26.12 0.00 43.02 4.37
2558 2712 1.430632 GTGATGCGCATTCAGTGGG 59.569 57.895 26.12 0.00 43.21 4.61
2559 2713 1.430632 GGTGATGCGCATTCAGTGG 59.569 57.895 26.12 0.00 0.00 4.00
2560 2714 1.061411 CGGTGATGCGCATTCAGTG 59.939 57.895 26.12 13.82 0.00 3.66
2561 2715 2.108514 CCGGTGATGCGCATTCAGT 61.109 57.895 26.12 0.98 0.00 3.41
2562 2716 1.368345 TTCCGGTGATGCGCATTCAG 61.368 55.000 26.12 19.44 0.00 3.02
2563 2717 0.957888 TTTCCGGTGATGCGCATTCA 60.958 50.000 26.12 19.83 0.00 2.57
2564 2718 0.381801 ATTTCCGGTGATGCGCATTC 59.618 50.000 26.12 19.54 0.00 2.67
2565 2719 0.381801 GATTTCCGGTGATGCGCATT 59.618 50.000 26.12 8.31 0.00 3.56
2566 2720 1.447317 GGATTTCCGGTGATGCGCAT 61.447 55.000 25.66 25.66 0.00 4.73
2567 2721 2.112198 GGATTTCCGGTGATGCGCA 61.112 57.895 14.96 14.96 0.00 6.09
2568 2722 1.819632 AGGATTTCCGGTGATGCGC 60.820 57.895 0.00 0.00 42.08 6.09
2569 2723 0.461870 TCAGGATTTCCGGTGATGCG 60.462 55.000 0.00 0.00 42.08 4.73
2570 2724 1.750193 TTCAGGATTTCCGGTGATGC 58.250 50.000 0.00 2.01 42.08 3.91
2571 2725 6.449635 TTTATTTCAGGATTTCCGGTGATG 57.550 37.500 0.00 0.00 42.08 3.07
2572 2726 6.265422 GGATTTATTTCAGGATTTCCGGTGAT 59.735 38.462 0.00 0.00 42.08 3.06
2573 2727 5.592688 GGATTTATTTCAGGATTTCCGGTGA 59.407 40.000 0.00 0.00 42.08 4.02
2574 2728 5.359576 TGGATTTATTTCAGGATTTCCGGTG 59.640 40.000 0.00 0.00 42.08 4.94
2575 2729 5.515106 TGGATTTATTTCAGGATTTCCGGT 58.485 37.500 0.00 0.00 42.08 5.28
2576 2730 6.321181 TCTTGGATTTATTTCAGGATTTCCGG 59.679 38.462 0.00 0.00 42.08 5.14
2577 2731 7.333528 TCTTGGATTTATTTCAGGATTTCCG 57.666 36.000 0.00 0.00 42.08 4.30
2584 2738 8.971321 CGCATTTATTCTTGGATTTATTTCAGG 58.029 33.333 0.00 0.00 0.00 3.86
2585 2739 9.734620 TCGCATTTATTCTTGGATTTATTTCAG 57.265 29.630 0.00 0.00 0.00 3.02
2586 2740 9.734620 CTCGCATTTATTCTTGGATTTATTTCA 57.265 29.630 0.00 0.00 0.00 2.69
2587 2741 8.694394 GCTCGCATTTATTCTTGGATTTATTTC 58.306 33.333 0.00 0.00 0.00 2.17
2588 2742 8.196771 TGCTCGCATTTATTCTTGGATTTATTT 58.803 29.630 0.00 0.00 0.00 1.40
2589 2743 7.649306 GTGCTCGCATTTATTCTTGGATTTATT 59.351 33.333 0.00 0.00 0.00 1.40
2590 2744 7.141363 GTGCTCGCATTTATTCTTGGATTTAT 58.859 34.615 0.00 0.00 0.00 1.40
2591 2745 6.459573 GGTGCTCGCATTTATTCTTGGATTTA 60.460 38.462 0.00 0.00 0.00 1.40
2592 2746 5.343249 GTGCTCGCATTTATTCTTGGATTT 58.657 37.500 0.00 0.00 0.00 2.17
2593 2747 4.202050 GGTGCTCGCATTTATTCTTGGATT 60.202 41.667 0.00 0.00 0.00 3.01
2594 2748 3.316308 GGTGCTCGCATTTATTCTTGGAT 59.684 43.478 0.00 0.00 0.00 3.41
2595 2749 2.682856 GGTGCTCGCATTTATTCTTGGA 59.317 45.455 0.00 0.00 0.00 3.53
2596 2750 2.423185 TGGTGCTCGCATTTATTCTTGG 59.577 45.455 0.00 0.00 0.00 3.61
2597 2751 3.488047 CCTGGTGCTCGCATTTATTCTTG 60.488 47.826 0.00 0.00 0.00 3.02
2598 2752 2.684881 CCTGGTGCTCGCATTTATTCTT 59.315 45.455 0.00 0.00 0.00 2.52
2599 2753 2.092968 TCCTGGTGCTCGCATTTATTCT 60.093 45.455 0.00 0.00 0.00 2.40
2600 2754 2.288666 TCCTGGTGCTCGCATTTATTC 58.711 47.619 0.00 0.00 0.00 1.75
2601 2755 2.418368 TCCTGGTGCTCGCATTTATT 57.582 45.000 0.00 0.00 0.00 1.40
2602 2756 2.645838 ATCCTGGTGCTCGCATTTAT 57.354 45.000 0.00 0.00 0.00 1.40
2603 2757 2.418368 AATCCTGGTGCTCGCATTTA 57.582 45.000 0.00 0.00 0.00 1.40
2604 2758 1.203052 CAAATCCTGGTGCTCGCATTT 59.797 47.619 0.00 0.00 0.00 2.32
2605 2759 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
2606 2760 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2607 2761 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
2608 2762 0.169009 GTTCAAATCCTGGTGCTCGC 59.831 55.000 0.00 0.00 0.00 5.03
2609 2763 0.804989 GGTTCAAATCCTGGTGCTCG 59.195 55.000 0.00 0.00 0.00 5.03
2610 2764 1.177401 GGGTTCAAATCCTGGTGCTC 58.823 55.000 0.00 0.00 0.00 4.26
2611 2765 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
2612 2766 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
2628 2782 1.700042 GGTATCTCCAGCCCACCAGG 61.700 65.000 0.00 0.00 35.73 4.45
2629 2783 0.982852 TGGTATCTCCAGCCCACCAG 60.983 60.000 0.00 0.00 41.93 4.00
2630 2784 1.082019 TGGTATCTCCAGCCCACCA 59.918 57.895 0.00 0.00 41.93 4.17
2631 2785 4.066614 TGGTATCTCCAGCCCACC 57.933 61.111 0.00 0.00 41.93 4.61
2638 2792 3.421394 AGAGGGATTGTGGTATCTCCA 57.579 47.619 0.00 0.00 45.01 3.86
2639 2793 4.040584 GGTTAGAGGGATTGTGGTATCTCC 59.959 50.000 0.00 0.00 0.00 3.71
2640 2794 4.654262 TGGTTAGAGGGATTGTGGTATCTC 59.346 45.833 0.00 0.00 0.00 2.75
2641 2795 4.631234 TGGTTAGAGGGATTGTGGTATCT 58.369 43.478 0.00 0.00 0.00 1.98
2642 2796 5.513267 GGATGGTTAGAGGGATTGTGGTATC 60.513 48.000 0.00 0.00 0.00 2.24
2643 2797 4.351111 GGATGGTTAGAGGGATTGTGGTAT 59.649 45.833 0.00 0.00 0.00 2.73
2644 2798 3.714798 GGATGGTTAGAGGGATTGTGGTA 59.285 47.826 0.00 0.00 0.00 3.25
2645 2799 2.509964 GGATGGTTAGAGGGATTGTGGT 59.490 50.000 0.00 0.00 0.00 4.16
2646 2800 2.509548 TGGATGGTTAGAGGGATTGTGG 59.490 50.000 0.00 0.00 0.00 4.17
2647 2801 3.931907 TGGATGGTTAGAGGGATTGTG 57.068 47.619 0.00 0.00 0.00 3.33
2648 2802 3.053619 GGTTGGATGGTTAGAGGGATTGT 60.054 47.826 0.00 0.00 0.00 2.71
2649 2803 3.053693 TGGTTGGATGGTTAGAGGGATTG 60.054 47.826 0.00 0.00 0.00 2.67
2650 2804 3.053619 GTGGTTGGATGGTTAGAGGGATT 60.054 47.826 0.00 0.00 0.00 3.01
2651 2805 2.509964 GTGGTTGGATGGTTAGAGGGAT 59.490 50.000 0.00 0.00 0.00 3.85
2652 2806 1.913419 GTGGTTGGATGGTTAGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
2653 2807 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
2654 2808 2.356125 CCTGTGGTTGGATGGTTAGAGG 60.356 54.545 0.00 0.00 0.00 3.69
2655 2809 2.305927 ACCTGTGGTTGGATGGTTAGAG 59.694 50.000 0.00 0.00 27.29 2.43
2656 2810 2.344592 ACCTGTGGTTGGATGGTTAGA 58.655 47.619 0.00 0.00 27.29 2.10
2657 2811 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
2670 2824 1.845809 GAGCAGCGAACCAACCTGTG 61.846 60.000 0.00 0.00 0.00 3.66
2671 2825 1.598130 GAGCAGCGAACCAACCTGT 60.598 57.895 0.00 0.00 0.00 4.00
2672 2826 1.597854 TGAGCAGCGAACCAACCTG 60.598 57.895 0.00 0.00 0.00 4.00
2673 2827 1.598130 GTGAGCAGCGAACCAACCT 60.598 57.895 0.00 0.00 0.00 3.50
2674 2828 1.237285 ATGTGAGCAGCGAACCAACC 61.237 55.000 0.00 0.00 0.00 3.77
2675 2829 0.110056 CATGTGAGCAGCGAACCAAC 60.110 55.000 0.00 0.00 0.00 3.77
2676 2830 0.534877 ACATGTGAGCAGCGAACCAA 60.535 50.000 0.00 0.00 0.00 3.67
2677 2831 0.534877 AACATGTGAGCAGCGAACCA 60.535 50.000 0.00 0.00 0.00 3.67
2678 2832 0.166814 GAACATGTGAGCAGCGAACC 59.833 55.000 0.00 0.00 0.00 3.62
2679 2833 0.179240 CGAACATGTGAGCAGCGAAC 60.179 55.000 0.00 0.00 0.00 3.95
2680 2834 1.291184 CCGAACATGTGAGCAGCGAA 61.291 55.000 0.00 0.00 0.00 4.70
2681 2835 1.737735 CCGAACATGTGAGCAGCGA 60.738 57.895 0.00 0.00 0.00 4.93
2682 2836 0.735978 TACCGAACATGTGAGCAGCG 60.736 55.000 0.00 0.00 0.00 5.18
2683 2837 1.656652 ATACCGAACATGTGAGCAGC 58.343 50.000 0.00 0.00 0.00 5.25
2684 2838 4.876125 AGATATACCGAACATGTGAGCAG 58.124 43.478 0.00 0.00 0.00 4.24
2685 2839 4.262036 GGAGATATACCGAACATGTGAGCA 60.262 45.833 0.00 0.00 0.00 4.26
2686 2840 4.021894 AGGAGATATACCGAACATGTGAGC 60.022 45.833 0.00 0.00 0.00 4.26
2687 2841 5.713792 AGGAGATATACCGAACATGTGAG 57.286 43.478 0.00 0.00 0.00 3.51
2688 2842 6.479972 AAAGGAGATATACCGAACATGTGA 57.520 37.500 0.00 0.00 0.00 3.58
2689 2843 6.761242 TGAAAAGGAGATATACCGAACATGTG 59.239 38.462 0.00 0.00 0.00 3.21
2690 2844 6.761714 GTGAAAAGGAGATATACCGAACATGT 59.238 38.462 0.00 0.00 0.00 3.21
2691 2845 6.074302 CGTGAAAAGGAGATATACCGAACATG 60.074 42.308 0.00 0.00 0.00 3.21
2692 2846 5.983720 CGTGAAAAGGAGATATACCGAACAT 59.016 40.000 0.00 0.00 0.00 2.71
2693 2847 5.105635 ACGTGAAAAGGAGATATACCGAACA 60.106 40.000 0.00 0.00 0.00 3.18
2694 2848 5.231568 CACGTGAAAAGGAGATATACCGAAC 59.768 44.000 10.90 0.00 0.00 3.95
2695 2849 5.125900 TCACGTGAAAAGGAGATATACCGAA 59.874 40.000 17.62 0.00 0.00 4.30
2696 2850 4.641541 TCACGTGAAAAGGAGATATACCGA 59.358 41.667 17.62 0.00 0.00 4.69
2697 2851 4.928601 TCACGTGAAAAGGAGATATACCG 58.071 43.478 17.62 0.00 0.00 4.02
2712 2866 9.701098 ACTTATATAGAACACTTTTTCACGTGA 57.299 29.630 15.76 15.76 35.23 4.35
2766 4746 9.844790 TTGAGAAAAATATGTTGTTATGAGCTG 57.155 29.630 0.00 0.00 0.00 4.24
2767 4747 9.846248 GTTGAGAAAAATATGTTGTTATGAGCT 57.154 29.630 0.00 0.00 0.00 4.09
2778 4758 6.457355 TGCTTGCATGTTGAGAAAAATATGT 58.543 32.000 1.14 0.00 32.83 2.29
2808 4790 5.101648 TCCATACATGTTGAATGCTGAGA 57.898 39.130 2.30 0.00 0.00 3.27
2813 4795 9.350357 GATCATTTATCCATACATGTTGAATGC 57.650 33.333 2.30 0.00 0.00 3.56
2825 4807 9.006839 GCAAGTTGAGATGATCATTTATCCATA 57.993 33.333 10.14 0.00 37.89 2.74
2829 4811 7.068341 GTCGCAAGTTGAGATGATCATTTATC 58.932 38.462 12.62 9.26 37.89 1.75
2830 4812 6.017605 GGTCGCAAGTTGAGATGATCATTTAT 60.018 38.462 12.62 0.00 37.89 1.40
2841 4823 2.542020 TTCATGGTCGCAAGTTGAGA 57.458 45.000 7.16 6.05 39.48 3.27
2984 4966 7.332213 TCAATGAGAACTGATTGTGTGAAAA 57.668 32.000 12.12 0.00 32.40 2.29
3042 5399 7.466050 GCTCACAACTTTATGTAACTAGATGGC 60.466 40.741 0.00 0.00 30.84 4.40
3043 5400 7.766278 AGCTCACAACTTTATGTAACTAGATGG 59.234 37.037 0.00 0.00 30.84 3.51
3075 5432 5.703730 TTTAGGGGATCGGTTAGAAATGT 57.296 39.130 0.00 0.00 0.00 2.71
3090 5447 6.212993 ACTTCTACTCCACTAACTTTTAGGGG 59.787 42.308 7.80 7.80 39.46 4.79
3111 5468 6.522946 ACTCCACTAACTTTACTCCAACTTC 58.477 40.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.