Multiple sequence alignment - TraesCS5B01G150900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G150900 chr5B 100.000 4635 0 0 1 4635 278476913 278472279 0.000000e+00 8560.0
1 TraesCS5B01G150900 chr5B 89.091 275 28 2 4360 4634 455170863 455170591 1.600000e-89 340.0
2 TraesCS5B01G150900 chr5B 79.036 477 88 9 3 469 583906940 583906466 2.690000e-82 316.0
3 TraesCS5B01G150900 chr5D 94.952 4655 172 24 1 4635 245206745 245202134 0.000000e+00 7236.0
4 TraesCS5B01G150900 chr5D 88.393 112 11 1 1854 1965 91631904 91632013 2.910000e-27 134.0
5 TraesCS5B01G150900 chr5D 87.156 109 9 3 1857 1965 91850110 91850213 8.150000e-23 119.0
6 TraesCS5B01G150900 chr5A 93.681 4257 202 26 28 4264 329252447 329248238 0.000000e+00 6309.0
7 TraesCS5B01G150900 chr5A 95.238 378 17 1 4259 4635 329245175 329244798 8.580000e-167 597.0
8 TraesCS5B01G150900 chr5A 89.583 96 10 0 1854 1949 85264337 85264432 6.300000e-24 122.0
9 TraesCS5B01G150900 chr6D 90.818 501 21 7 2938 3413 100198930 100198430 0.000000e+00 647.0
10 TraesCS5B01G150900 chr4D 90.818 501 21 8 2938 3413 329012202 329012702 0.000000e+00 647.0
11 TraesCS5B01G150900 chr4D 90.619 501 21 8 2938 3413 105942803 105942304 3.910000e-180 641.0
12 TraesCS5B01G150900 chr4D 80.753 478 81 10 1 469 502107153 502107628 3.410000e-96 363.0
13 TraesCS5B01G150900 chr4A 90.335 269 25 1 4366 4634 115567237 115566970 7.380000e-93 351.0
14 TraesCS5B01G150900 chr2D 89.781 274 26 2 4357 4630 243656317 243656046 2.650000e-92 350.0
15 TraesCS5B01G150900 chr2D 90.074 272 24 3 4363 4634 380416529 380416797 2.650000e-92 350.0
16 TraesCS5B01G150900 chr2D 79.498 478 81 11 4 469 38062902 38062430 1.610000e-84 324.0
17 TraesCS5B01G150900 chr6A 89.493 276 27 2 4359 4634 381088703 381088976 9.540000e-92 348.0
18 TraesCS5B01G150900 chr6A 77.590 473 90 10 1 459 410270613 410270143 5.910000e-69 272.0
19 TraesCS5B01G150900 chr7D 79.749 479 89 8 4 475 379772138 379771661 1.600000e-89 340.0
20 TraesCS5B01G150900 chr2B 89.338 272 27 2 4359 4630 136170212 136170481 1.600000e-89 340.0
21 TraesCS5B01G150900 chr2B 79.714 419 71 9 52 457 387259474 387259057 1.630000e-74 291.0
22 TraesCS5B01G150900 chr2A 88.849 278 27 4 4359 4635 310407139 310406865 5.740000e-89 339.0
23 TraesCS5B01G150900 chr3B 79.461 482 83 7 2 474 749867974 749868448 1.240000e-85 327.0
24 TraesCS5B01G150900 chr3A 94.595 37 1 1 517 553 738127858 738127823 6.480000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G150900 chr5B 278472279 278476913 4634 True 8560 8560 100.0000 1 4635 1 chr5B.!!$R1 4634
1 TraesCS5B01G150900 chr5D 245202134 245206745 4611 True 7236 7236 94.9520 1 4635 1 chr5D.!!$R1 4634
2 TraesCS5B01G150900 chr5A 329244798 329252447 7649 True 3453 6309 94.4595 28 4635 2 chr5A.!!$R1 4607
3 TraesCS5B01G150900 chr6D 100198430 100198930 500 True 647 647 90.8180 2938 3413 1 chr6D.!!$R1 475
4 TraesCS5B01G150900 chr4D 329012202 329012702 500 False 647 647 90.8180 2938 3413 1 chr4D.!!$F1 475

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.108019 GGGTGGAAGAACGTCAGGTT 59.892 55.0 0.00 0.0 42.96 3.50 F
1173 1195 0.322456 CATTTCAACCTCTCCCCGCA 60.322 55.0 0.00 0.0 0.00 5.69 F
1970 1992 0.671472 CCACAGTCTGATTGCGCTGA 60.671 55.0 9.73 0.0 33.57 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1484 0.469705 AGCATTGAAACTGCACCCCA 60.470 50.0 0.0 0.0 42.15 4.96 R
2159 2181 0.686112 AGACTCTGTAGGCAGGGCTC 60.686 60.0 0.0 0.0 47.00 4.70 R
3646 3697 0.036732 TGGGAAGATGCCACACTGAC 59.963 55.0 0.0 0.0 30.85 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.742308 AGAACAAGCCTAACCTGGGA 58.258 50.000 0.00 0.00 0.00 4.37
37 38 2.309504 GGGAGGGGAAAGGGTGGAG 61.310 68.421 0.00 0.00 0.00 3.86
49 50 0.765510 GGGTGGAGTGACTTCTGGTT 59.234 55.000 0.00 0.00 0.00 3.67
125 126 7.956328 TCTAAGGCTAGAGTGTCTAAAATCA 57.044 36.000 0.00 0.00 30.34 2.57
169 170 5.127491 AGGATAGTTACTGGAGAGAACTCG 58.873 45.833 0.00 0.00 43.44 4.18
209 210 0.396811 CCTGAAGGGTGGAAGAACGT 59.603 55.000 0.00 0.00 0.00 3.99
214 215 0.763223 AGGGTGGAAGAACGTCAGGT 60.763 55.000 0.00 0.00 0.00 4.00
215 216 0.108019 GGGTGGAAGAACGTCAGGTT 59.892 55.000 0.00 0.00 42.96 3.50
218 219 2.550208 GGTGGAAGAACGTCAGGTTGAT 60.550 50.000 0.00 0.00 39.50 2.57
255 256 7.001073 GCATCTCCTAGGTAGAATTTTCCATT 58.999 38.462 9.08 0.00 0.00 3.16
273 274 3.841845 CCATTGGGGATATTGATGCCATT 59.158 43.478 0.00 0.00 45.29 3.16
287 288 1.209261 TGCCATTAAGTCGAGCCATGA 59.791 47.619 0.00 0.00 0.00 3.07
323 329 4.266939 TGGGCTGATCCTTCCCAA 57.733 55.556 12.66 0.17 46.35 4.12
325 331 1.139498 TGGGCTGATCCTTCCCAACA 61.139 55.000 12.66 0.00 46.35 3.33
396 404 0.385223 CGCTTGTGCAGTGCTTTCTC 60.385 55.000 17.60 2.11 39.64 2.87
415 423 1.228367 CCCCTGTATGATGCAGCCC 60.228 63.158 4.91 0.00 32.93 5.19
514 522 7.847711 TCCAACCTCATGGAAAATTTCTTTA 57.152 32.000 5.65 0.00 46.36 1.85
606 615 5.895636 TGTCAAACACCTAATGCTATTGG 57.104 39.130 0.00 0.00 0.00 3.16
633 643 5.549742 ATTCCTGCATTTTTCTTGTTGGA 57.450 34.783 0.00 0.00 0.00 3.53
822 838 7.310485 GGGGAAGAGTAGAAACTAAAGTGATCA 60.310 40.741 0.00 0.00 35.56 2.92
862 879 4.754114 TGAAACTAAACAATTTGCCATGGC 59.246 37.500 30.54 30.54 42.35 4.40
911 928 4.773323 TCAGCATATCATACCGTCTCAG 57.227 45.455 0.00 0.00 0.00 3.35
920 938 2.450609 TACCGTCTCAGAAAGCAACC 57.549 50.000 0.00 0.00 0.00 3.77
946 964 4.874970 ACGGGCCTAATAAATACTGTACG 58.125 43.478 0.84 0.00 0.00 3.67
961 980 0.735287 GTACGGCCAACTTCGACCTC 60.735 60.000 2.24 0.00 0.00 3.85
984 1003 8.139989 CCTCAGAGTTTCAAATCAAATCAAACT 58.860 33.333 0.00 0.00 39.45 2.66
990 1009 7.926018 AGTTTCAAATCAAATCAAACTACCACC 59.074 33.333 0.00 0.00 35.91 4.61
993 1012 6.322456 TCAAATCAAATCAAACTACCACCACA 59.678 34.615 0.00 0.00 0.00 4.17
994 1013 5.705609 ATCAAATCAAACTACCACCACAC 57.294 39.130 0.00 0.00 0.00 3.82
1173 1195 0.322456 CATTTCAACCTCTCCCCGCA 60.322 55.000 0.00 0.00 0.00 5.69
1439 1461 1.600916 GTGGTCCAGCACCCTGTTC 60.601 63.158 0.00 0.00 46.18 3.18
1445 1467 1.494721 TCCAGCACCCTGTTCTTTTCT 59.505 47.619 0.00 0.00 37.38 2.52
1460 1482 7.162082 TGTTCTTTTCTCTCTAGGGTTTGATC 58.838 38.462 0.00 0.00 0.00 2.92
1462 1484 7.560796 TCTTTTCTCTCTAGGGTTTGATCTT 57.439 36.000 0.00 0.00 0.00 2.40
1531 1553 1.135199 GCAGTGATTTGGGATGCAGTG 60.135 52.381 0.00 0.00 36.88 3.66
1592 1614 3.104766 CTGCGGCATGTGTGATCC 58.895 61.111 1.75 0.00 0.00 3.36
1596 1618 2.589540 GGCATGTGTGATCCGGGA 59.410 61.111 0.00 0.00 0.00 5.14
1690 1712 8.567104 TCATTTATCAATGATGACCGGTTTATG 58.433 33.333 9.42 2.90 43.32 1.90
1708 1730 7.275560 CGGTTTATGCTTTATTTTTCTTGGGAG 59.724 37.037 0.00 0.00 0.00 4.30
1770 1792 4.202158 CGTGTTTCATTTTGTTCACTGTCG 59.798 41.667 0.00 0.00 0.00 4.35
1855 1877 1.137872 CTGCGAGAGGCCAAATACTCT 59.862 52.381 5.01 0.00 46.18 3.24
1970 1992 0.671472 CCACAGTCTGATTGCGCTGA 60.671 55.000 9.73 0.00 33.57 4.26
2086 2108 7.731688 TCTTCCTTGTACGGTTATAATCCCTAT 59.268 37.037 0.00 0.00 0.00 2.57
2090 2112 6.845758 TGTACGGTTATAATCCCTATCCTG 57.154 41.667 0.00 0.00 0.00 3.86
2145 2167 5.875359 GTCAGTAGTTTGAATGTCCTTAGGG 59.125 44.000 0.00 0.00 0.00 3.53
2146 2168 5.783360 TCAGTAGTTTGAATGTCCTTAGGGA 59.217 40.000 0.00 0.00 39.70 4.20
2159 2181 5.467035 TCCTTAGGGACAAATTTTGCTTG 57.533 39.130 9.04 0.00 36.57 4.01
2244 2267 8.934023 TTGTCCAAAAGGAATACAGAGTTAAT 57.066 30.769 0.00 0.00 0.00 1.40
2309 2332 3.371285 GGCGAAGAACAGGATTCAGTAAC 59.629 47.826 0.00 0.00 0.00 2.50
2371 2394 9.520204 GGATCATAAAACATATTGTTGGTTCTG 57.480 33.333 0.00 0.00 40.14 3.02
2491 2516 9.784531 GGAACAGATTCTGATTATTGGATAGAA 57.215 33.333 20.33 0.00 35.18 2.10
2599 2624 8.425703 GCTTAATCCTGGTAGAAATAACTCTCT 58.574 37.037 0.00 0.00 0.00 3.10
2708 2733 6.783708 ACCATAAAGTGAAAACTGACCAAA 57.216 33.333 0.00 0.00 0.00 3.28
3019 3045 6.494842 TGAACTGCAACTTTGTATTCTGAAC 58.505 36.000 0.00 0.00 0.00 3.18
3299 3346 5.760131 ACTGGAGAAATAGCTTAAATGCCT 58.240 37.500 0.00 0.00 0.00 4.75
3310 3357 9.717942 AATAGCTTAAATGCCTAGAGTGAATAG 57.282 33.333 0.00 0.00 0.00 1.73
3355 3402 5.809001 AGTCTTCATGAAGCTGTTGGATAA 58.191 37.500 27.45 6.35 38.28 1.75
3366 3417 5.615289 AGCTGTTGGATAACATAGCCTTAG 58.385 41.667 0.00 0.00 45.16 2.18
3584 3635 0.897621 GCTGGGGATCAAAACAAGGG 59.102 55.000 0.00 0.00 0.00 3.95
3646 3697 7.081526 AGAAGAGGTTTGATTTCGATCATTG 57.918 36.000 0.00 0.00 0.00 2.82
3661 3712 3.144657 TCATTGTCAGTGTGGCATCTT 57.855 42.857 0.00 0.00 29.04 2.40
3692 3743 6.528321 ACTGAAAAGAGTGTCTTGATCATCA 58.472 36.000 0.00 0.00 36.71 3.07
3700 3751 5.813383 AGTGTCTTGATCATCATTCCAAGT 58.187 37.500 0.00 0.00 37.74 3.16
3893 3944 2.279173 AGATAGCTGGGGTTGTTCCTT 58.721 47.619 0.00 0.00 36.25 3.36
4181 4232 3.283751 CACAACTTAACACCTGTTCCCA 58.716 45.455 0.00 0.00 39.31 4.37
4296 7416 8.986847 CAATAACAGGCAATGACACAAAAATAA 58.013 29.630 0.00 0.00 0.00 1.40
4413 7533 3.517612 ACAAGTTGGGTTAGGCTAGAGA 58.482 45.455 7.96 0.00 0.00 3.10
4458 7578 3.370846 CCAACTCATGGTTCTGGCAGATA 60.371 47.826 19.50 8.51 44.85 1.98
4511 7631 7.147846 CCATGGCTAGTTCTTTTGGTGATATTT 60.148 37.037 0.00 0.00 0.00 1.40
4604 7724 1.001068 TCAACACGCTTTATCCGTCCA 59.999 47.619 0.00 0.00 36.69 4.02
4623 7743 2.432146 CCACTATGCACTGGAGCTTCTA 59.568 50.000 0.00 0.00 34.99 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.134438 GTCACTCCACCCTTTCCCCT 61.134 60.000 0.00 0.00 0.00 4.79
37 38 8.794335 ATTTAAGATCCTTAACCAGAAGTCAC 57.206 34.615 0.00 0.00 0.00 3.67
124 125 1.369625 GACTGCACGGGGATAGTTTG 58.630 55.000 0.00 0.00 0.00 2.93
125 126 0.252197 GGACTGCACGGGGATAGTTT 59.748 55.000 0.00 0.00 0.00 2.66
169 170 5.760253 CAGGACAATCAGGTACCATATGAAC 59.240 44.000 15.94 1.94 0.00 3.18
209 210 3.817084 GCTTGCTATGCATATCAACCTGA 59.183 43.478 16.92 0.00 38.76 3.86
255 256 5.324409 GACTTAATGGCATCAATATCCCCA 58.676 41.667 0.00 0.00 0.00 4.96
273 274 1.067060 CCGACATCATGGCTCGACTTA 59.933 52.381 0.00 0.00 0.00 2.24
287 288 1.674441 CATGATGCTTCTTGCCGACAT 59.326 47.619 0.88 0.00 42.00 3.06
323 329 8.445275 TGAAGTTCACATATGTGTTAGTTTGT 57.555 30.769 30.03 12.24 45.76 2.83
325 331 8.902540 TCTGAAGTTCACATATGTGTTAGTTT 57.097 30.769 30.03 19.31 45.76 2.66
396 404 1.228367 GGCTGCATCATACAGGGGG 60.228 63.158 0.50 0.00 35.62 5.40
415 423 1.268999 GCTAGAGTGCCAGAGATCACG 60.269 57.143 0.00 0.00 38.19 4.35
514 522 8.365647 AGCAATCTTCAAATCATTCAAGAAACT 58.634 29.630 0.00 0.00 0.00 2.66
736 752 2.736144 ACTTGATTCGCACGGTCTTA 57.264 45.000 0.00 0.00 0.00 2.10
739 755 1.278238 CCTACTTGATTCGCACGGTC 58.722 55.000 0.00 0.00 0.00 4.79
789 805 5.138276 AGTTTCTACTCTTCCCCCAAAAAC 58.862 41.667 0.00 0.00 0.00 2.43
862 879 4.994471 TGAGCACTGGCCGCACTG 62.994 66.667 0.00 0.00 42.56 3.66
871 888 2.898920 AATCCGGCCCATGAGCACTG 62.899 60.000 0.27 0.00 0.00 3.66
872 889 2.615227 GAATCCGGCCCATGAGCACT 62.615 60.000 0.27 0.00 0.00 4.40
873 890 2.124151 AATCCGGCCCATGAGCAC 60.124 61.111 0.27 0.00 0.00 4.40
874 891 2.192979 GAATCCGGCCCATGAGCA 59.807 61.111 0.27 0.00 0.00 4.26
875 892 1.895707 CTGAATCCGGCCCATGAGC 60.896 63.158 0.00 0.00 0.00 4.26
876 893 1.895707 GCTGAATCCGGCCCATGAG 60.896 63.158 0.00 0.00 38.74 2.90
877 894 1.998444 ATGCTGAATCCGGCCCATGA 61.998 55.000 0.00 0.00 44.00 3.07
878 895 0.250858 TATGCTGAATCCGGCCCATG 60.251 55.000 0.00 0.00 44.00 3.66
911 928 0.242825 GGCCCGTTTAGGTTGCTTTC 59.757 55.000 0.00 0.00 38.74 2.62
920 938 7.115378 CGTACAGTATTTATTAGGCCCGTTTAG 59.885 40.741 0.00 0.00 0.00 1.85
946 964 0.390472 CTCTGAGGTCGAAGTTGGCC 60.390 60.000 0.00 0.00 0.00 5.36
961 980 9.185192 GGTAGTTTGATTTGATTTGAAACTCTG 57.815 33.333 0.00 0.00 37.83 3.35
984 1003 0.248012 CCATACGCTGTGTGGTGGTA 59.752 55.000 15.33 0.00 39.46 3.25
990 1009 2.788176 CGTCGCCATACGCTGTGTG 61.788 63.158 3.71 0.00 43.23 3.82
993 1012 3.411418 CTCCGTCGCCATACGCTGT 62.411 63.158 0.00 0.00 43.23 4.40
994 1013 2.655364 CTCCGTCGCCATACGCTG 60.655 66.667 0.00 0.00 43.23 5.18
1173 1195 2.655364 CGAACCTGCGCGATCGAT 60.655 61.111 21.57 0.00 37.48 3.59
1439 1461 6.597280 CCAAGATCAAACCCTAGAGAGAAAAG 59.403 42.308 0.00 0.00 0.00 2.27
1445 1467 3.115390 CCCCAAGATCAAACCCTAGAGA 58.885 50.000 0.00 0.00 0.00 3.10
1460 1482 1.606224 GCATTGAAACTGCACCCCAAG 60.606 52.381 0.00 0.00 39.46 3.61
1462 1484 0.469705 AGCATTGAAACTGCACCCCA 60.470 50.000 0.00 0.00 42.15 4.96
1531 1553 4.448732 GCATCACAAATCAAACCCTGAAAC 59.551 41.667 0.00 0.00 37.67 2.78
1592 1614 0.609131 AACCCTGAAACTGCATCCCG 60.609 55.000 0.00 0.00 0.00 5.14
1596 1618 2.496899 ATCGAACCCTGAAACTGCAT 57.503 45.000 0.00 0.00 0.00 3.96
1690 1712 8.523658 ACTATCAACTCCCAAGAAAAATAAAGC 58.476 33.333 0.00 0.00 0.00 3.51
1708 1730 3.053455 GAGCTACGATGGCACTATCAAC 58.947 50.000 0.00 0.00 0.00 3.18
1747 1769 4.202158 CGACAGTGAACAAAATGAAACACG 59.798 41.667 0.00 0.00 34.16 4.49
1770 1792 9.298774 AGTATACGTTAGAACAATTAGTGAAGC 57.701 33.333 0.00 0.00 0.00 3.86
1855 1877 1.276138 ACATGCAGATCAAGGTCGTCA 59.724 47.619 0.00 0.00 0.00 4.35
1970 1992 4.712476 ACAAGACAAGTGAAGAGATGCTT 58.288 39.130 0.00 0.00 40.25 3.91
2086 2108 8.251026 CAGTAGTGATAAGTCAATGTAACAGGA 58.749 37.037 0.00 0.00 35.80 3.86
2090 2112 7.545965 ACTGCAGTAGTGATAAGTCAATGTAAC 59.454 37.037 20.16 0.00 38.49 2.50
2145 2167 3.062042 CAGGGCTCAAGCAAAATTTGTC 58.938 45.455 7.60 0.25 44.36 3.18
2146 2168 2.807837 GCAGGGCTCAAGCAAAATTTGT 60.808 45.455 7.60 0.00 44.36 2.83
2159 2181 0.686112 AGACTCTGTAGGCAGGGCTC 60.686 60.000 0.00 0.00 47.00 4.70
2309 2332 8.298854 TGACCACTTCTTTGAATTATGACAATG 58.701 33.333 0.00 0.00 0.00 2.82
2371 2394 5.507315 GCTAGCTCTTGAGAGATCAGGTTAC 60.507 48.000 7.70 0.00 44.74 2.50
2450 2475 8.762645 AGAATCTGTTCCAGTCTACATTTCATA 58.237 33.333 0.00 0.00 34.81 2.15
2708 2733 7.854337 AGGGATGCATTTTCATTTGAATAAGT 58.146 30.769 0.00 0.00 33.54 2.24
3019 3045 6.055588 AGATTAACAATACAATCAGGGGTCG 58.944 40.000 0.00 0.00 34.28 4.79
3288 3335 6.986817 TGTCTATTCACTCTAGGCATTTAAGC 59.013 38.462 0.00 0.00 0.00 3.09
3310 3357 9.926158 AGACTACATGATCATGAATAGAATGTC 57.074 33.333 36.37 26.19 41.20 3.06
3355 3402 2.840651 ACTGCAAGGTCTAAGGCTATGT 59.159 45.455 0.00 0.00 39.30 2.29
3366 3417 0.977395 ACCCTGACTACTGCAAGGTC 59.023 55.000 0.00 3.33 39.30 3.85
3584 3635 6.427974 GGCTAAGAAGTAGTTTTTGTGTGTC 58.572 40.000 0.00 0.00 31.78 3.67
3646 3697 0.036732 TGGGAAGATGCCACACTGAC 59.963 55.000 0.00 0.00 30.85 3.51
3661 3712 3.711704 AGACACTCTTTTCAGTCTTGGGA 59.288 43.478 0.00 0.00 38.08 4.37
3827 3878 9.407380 AGCCAATAACTGTGATGAAACAATATA 57.593 29.630 0.00 0.00 0.00 0.86
3828 3879 8.192774 CAGCCAATAACTGTGATGAAACAATAT 58.807 33.333 0.00 0.00 0.00 1.28
3829 3880 7.362834 CCAGCCAATAACTGTGATGAAACAATA 60.363 37.037 0.00 0.00 33.09 1.90
3830 3881 6.392354 CAGCCAATAACTGTGATGAAACAAT 58.608 36.000 0.00 0.00 0.00 2.71
3845 3896 4.079787 AGCCTGTAAAGATCCAGCCAATAA 60.080 41.667 0.00 0.00 0.00 1.40
4021 4072 5.221891 GCATAATAAGACGTATGCCATGG 57.778 43.478 7.63 7.63 44.47 3.66
4402 7522 6.844388 TCTTATGGGTTTCATCTCTAGCCTAA 59.156 38.462 0.00 0.00 37.30 2.69
4413 7533 3.884895 TGTGCGATCTTATGGGTTTCAT 58.115 40.909 0.00 0.00 39.78 2.57
4458 7578 1.067821 GTGCGTGGAAGCTAGCTATCT 59.932 52.381 19.70 1.41 38.13 1.98
4604 7724 3.636300 CTCTAGAAGCTCCAGTGCATAGT 59.364 47.826 0.00 0.00 34.99 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.