Multiple sequence alignment - TraesCS5B01G150400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G150400 chr5B 100.000 5445 0 0 1 5445 278229394 278223950 0.000000e+00 10056.0
1 TraesCS5B01G150400 chr5B 80.597 335 44 11 5025 5344 186845079 186845407 7.050000e-59 239.0
2 TraesCS5B01G150400 chr5A 96.811 2603 72 8 2401 4999 328942642 328940047 0.000000e+00 4337.0
3 TraesCS5B01G150400 chr5A 92.658 2438 113 25 1 2402 328945314 328942907 0.000000e+00 3450.0
4 TraesCS5B01G150400 chr5A 92.130 432 30 4 4986 5415 328937112 328936683 1.680000e-169 606.0
5 TraesCS5B01G150400 chr5D 97.093 2133 59 3 2832 4962 244703207 244701076 0.000000e+00 3592.0
6 TraesCS5B01G150400 chr5D 95.480 2102 71 12 759 2846 244705314 244703223 0.000000e+00 3334.0
7 TraesCS5B01G150400 chr5D 96.480 483 15 2 325 805 244705792 244705310 0.000000e+00 797.0
8 TraesCS5B01G150400 chr5D 93.598 328 21 0 1 328 244706164 244705837 1.760000e-134 490.0
9 TraesCS5B01G150400 chr5D 84.817 382 28 13 5034 5415 244700746 244700395 1.870000e-94 357.0
10 TraesCS5B01G150400 chr5D 85.990 207 24 4 5027 5231 199425284 199425081 3.300000e-52 217.0
11 TraesCS5B01G150400 chr2B 81.194 335 42 12 5025 5344 74191993 74191665 3.260000e-62 250.0
12 TraesCS5B01G150400 chr7A 78.846 416 50 25 5027 5415 679171816 679171412 4.210000e-61 246.0
13 TraesCS5B01G150400 chr7A 81.757 296 37 8 5025 5307 690524849 690524558 1.180000e-56 231.0
14 TraesCS5B01G150400 chr2D 79.894 378 43 21 5027 5382 286025751 286026117 4.210000e-61 246.0
15 TraesCS5B01G150400 chr3A 85.507 207 25 4 5027 5231 329624251 329624454 1.540000e-50 211.0
16 TraesCS5B01G150400 chr3A 83.186 113 12 6 5027 5136 329644600 329644708 4.490000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G150400 chr5B 278223950 278229394 5444 True 10056.000000 10056 100.000000 1 5445 1 chr5B.!!$R1 5444
1 TraesCS5B01G150400 chr5A 328936683 328945314 8631 True 2797.666667 4337 93.866333 1 5415 3 chr5A.!!$R1 5414
2 TraesCS5B01G150400 chr5D 244700395 244706164 5769 True 1714.000000 3592 93.493600 1 5415 5 chr5D.!!$R2 5414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 655 0.394565 GAATGGAGGATGGAGGGACG 59.605 60.0 0.00 0.00 0.00 4.79 F
916 1028 0.548510 CCCCAAAGGCCCAACAAAAA 59.451 50.0 0.00 0.00 0.00 1.94 F
2099 2228 0.804989 GGTTGATGGAAACTCTGGCG 59.195 55.0 0.00 0.00 0.00 5.69 F
3383 3809 0.039527 TCACCATGACACTGTCGACG 60.040 55.0 11.62 8.41 34.95 5.12 F
4184 4610 2.245159 TCTTTGCAGGAGCCATATCG 57.755 50.0 0.00 0.00 41.13 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2537 2933 1.299926 CTCGGCTGGTATACGCACC 60.300 63.158 5.31 1.74 39.20 5.01 R
2756 3152 3.623060 GCATATAGGGCATATGTGTTCCG 59.377 47.826 15.60 0.00 45.74 4.30 R
3998 4424 0.523072 CCCATCGACCACAAAAGCAG 59.477 55.000 0.00 0.00 0.00 4.24 R
4196 4622 0.036732 ATTCAGGAGCGGCAACAAGA 59.963 50.000 1.45 0.00 0.00 3.02 R
5077 8456 0.744414 CGGGTGGTGAGCAATCGATT 60.744 55.000 4.39 4.39 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.193127 ACGATACAATGGAAGGGTGGA 58.807 47.619 0.00 0.00 0.00 4.02
87 88 1.938585 TGAAAGGAGGACCGATGAGT 58.061 50.000 0.00 0.00 41.83 3.41
206 207 3.655276 TTTTCTGACTCCAGTACCGTC 57.345 47.619 0.00 0.00 41.16 4.79
400 457 3.496160 CAGGAGGGGATGCTGGGG 61.496 72.222 0.00 0.00 43.30 4.96
460 517 5.356751 TCACAGCAACAACTGACAACTTAAT 59.643 36.000 0.00 0.00 40.25 1.40
477 534 6.642707 ACTTAATGCTAGAGCTAGGTGTAG 57.357 41.667 19.04 19.04 42.66 2.74
593 655 0.394565 GAATGGAGGATGGAGGGACG 59.605 60.000 0.00 0.00 0.00 4.79
733 795 2.083774 GCATCCACAAAGTCCGATCAA 58.916 47.619 0.00 0.00 0.00 2.57
752 814 5.559427 TCAACCGTACATCAATTGAATGG 57.441 39.130 13.09 13.16 0.00 3.16
916 1028 0.548510 CCCCAAAGGCCCAACAAAAA 59.451 50.000 0.00 0.00 0.00 1.94
918 1030 1.065126 CCCAAAGGCCCAACAAAAACA 60.065 47.619 0.00 0.00 0.00 2.83
920 1032 2.093235 CCAAAGGCCCAACAAAAACAGA 60.093 45.455 0.00 0.00 0.00 3.41
1206 1322 3.379445 GACGCTTCCCGGGAGTCA 61.379 66.667 27.97 13.89 42.52 3.41
1235 1351 1.162951 AGGAAGGAGGGGGAGGAAGA 61.163 60.000 0.00 0.00 0.00 2.87
1247 1363 2.564947 GGGAGGAAGATATGACTGCGAT 59.435 50.000 0.00 0.00 0.00 4.58
1281 1397 1.001641 ATGGCTCAGGCTTGACACC 60.002 57.895 0.00 0.00 38.73 4.16
1388 1505 5.766670 CCTTCGTCGGCCATATAGGTATATA 59.233 44.000 2.24 0.00 40.61 0.86
1416 1533 1.140652 TCTTGACATCCTGCACACACA 59.859 47.619 0.00 0.00 0.00 3.72
1425 1542 2.669569 GCACACACACCGGATGCT 60.670 61.111 9.46 0.00 33.44 3.79
1585 1713 3.010420 GCTAGAAATTCCGAGCCTTTGT 58.990 45.455 6.29 0.00 0.00 2.83
1770 1899 2.826428 CCTGTATCATCAGGTCCAACG 58.174 52.381 4.75 0.00 46.92 4.10
1801 1930 1.205657 CGTGGGTGTATCGATTTCGG 58.794 55.000 1.71 0.00 40.29 4.30
1949 2078 8.767478 AGCTCAAAGATTTGTGGAAATTATTG 57.233 30.769 5.29 0.00 39.18 1.90
2018 2147 6.994221 TCGAAGATCCCCAGATAATAAGTTC 58.006 40.000 0.00 0.00 30.90 3.01
2099 2228 0.804989 GGTTGATGGAAACTCTGGCG 59.195 55.000 0.00 0.00 0.00 5.69
2135 2264 5.512298 TCTGGAACATTGATGGATGTCATT 58.488 37.500 0.00 0.00 39.25 2.57
2170 2299 7.443575 AGTGGTATGTACGACTACTTTATCGAT 59.556 37.037 2.16 2.16 42.29 3.59
2228 2357 5.528043 TTGGCACTCAATTTGTTATGTGT 57.472 34.783 0.00 0.00 0.00 3.72
2254 2383 8.737168 TTAGCTGCTAATGTTCAGATAAATGT 57.263 30.769 17.67 0.00 37.97 2.71
2537 2933 6.292923 TGTTACATATAAACAGGATTCCCCG 58.707 40.000 0.00 0.00 40.87 5.73
2756 3152 5.725362 AGTATCTGTAACAAGCAAGTCTCC 58.275 41.667 0.00 0.00 0.00 3.71
2818 3214 0.175989 CCCGAAACAGTAGGAGAGGC 59.824 60.000 0.00 0.00 0.00 4.70
3025 3450 2.065799 ACTTTCCTCATTGGTGTCCCT 58.934 47.619 0.00 0.00 37.07 4.20
3320 3746 3.065019 ACACGTCAAATTGTGAACTGC 57.935 42.857 0.00 0.00 38.23 4.40
3383 3809 0.039527 TCACCATGACACTGTCGACG 60.040 55.000 11.62 8.41 34.95 5.12
3479 3905 6.484643 TCTCTTTACTCAATGATGCATTAGCC 59.515 38.462 0.00 0.00 41.13 3.93
3936 4362 3.947910 AGTGAAGTTTTGATGCCATGG 57.052 42.857 7.63 7.63 0.00 3.66
3993 4419 2.601905 GCCATCTCCCAGCCAATAAAT 58.398 47.619 0.00 0.00 0.00 1.40
4094 4520 5.809001 TGGATCTCTGTTTGCACTCTATTT 58.191 37.500 0.00 0.00 0.00 1.40
4095 4521 6.240894 TGGATCTCTGTTTGCACTCTATTTT 58.759 36.000 0.00 0.00 0.00 1.82
4125 4551 5.733676 TGCTGTCAATACTAAATGAGCTGA 58.266 37.500 0.00 0.00 0.00 4.26
4184 4610 2.245159 TCTTTGCAGGAGCCATATCG 57.755 50.000 0.00 0.00 41.13 2.92
4196 4622 1.810412 GCCATATCGTCGGCTTTCCTT 60.810 52.381 0.00 0.00 45.29 3.36
4342 4768 3.505680 TCATGGAAGTTGGAATGGAAACG 59.494 43.478 0.00 0.00 0.00 3.60
4372 4798 9.958180 TTGATGACTTCAGGTAATTTTCTGATA 57.042 29.630 10.06 3.49 39.42 2.15
4420 4846 3.506810 CTGGAACTCGATCTTGTCAGAC 58.493 50.000 0.00 0.00 0.00 3.51
4439 4865 4.449068 CAGACACTGACTTAAGCGACAAAT 59.551 41.667 1.29 0.00 32.44 2.32
4584 5011 2.061773 CTGTCAAGGCGTTGTCACTAG 58.938 52.381 17.96 4.72 34.98 2.57
4628 5055 4.942852 TCTTACTTTGTTGTGGCATTTGG 58.057 39.130 0.00 0.00 0.00 3.28
4682 5109 7.681679 TGTTTTGTACACCTTCAGATATACCA 58.318 34.615 0.00 0.00 0.00 3.25
4719 5146 8.154203 TGAATCCTGTGAAATGTAGTTCTTACA 58.846 33.333 0.00 0.00 45.86 2.41
4786 5213 5.581874 GCCATTATTGCAAGTGCTACAAAAT 59.418 36.000 4.94 0.00 42.66 1.82
4887 5314 7.625553 CAACTTCTACTGTAAATGAGCTATGC 58.374 38.462 0.00 0.00 0.00 3.14
4976 5404 8.856103 TGTATTAGTTCAAAGCTTTAGCCTTTT 58.144 29.630 12.25 0.00 43.38 2.27
4977 5405 9.129209 GTATTAGTTCAAAGCTTTAGCCTTTTG 57.871 33.333 12.25 9.10 43.38 2.44
5014 8393 8.631480 TTCCTTTATTCCTCTAAAGAAACCAC 57.369 34.615 5.40 0.00 39.87 4.16
5015 8394 7.173032 TCCTTTATTCCTCTAAAGAAACCACC 58.827 38.462 5.40 0.00 39.87 4.61
5029 8408 3.483954 CCACCTGGTGATGATGGTC 57.516 57.895 27.94 0.00 35.23 4.02
5059 8438 6.370994 CACCTTGGATCATATCAATCTGCTAC 59.629 42.308 0.00 0.00 0.00 3.58
5077 8456 3.797331 CAGTGGCTGGGACTGAGA 58.203 61.111 0.00 0.00 43.04 3.27
5078 8457 2.061220 CAGTGGCTGGGACTGAGAA 58.939 57.895 0.00 0.00 43.04 2.87
5110 8489 5.956642 TCACCACCCGCTTAAATTTATTTC 58.043 37.500 0.00 0.00 0.00 2.17
5144 8523 6.881065 CACCTTCATCTTCCTTGAATTGTCTA 59.119 38.462 0.00 0.00 32.94 2.59
5157 8536 5.670485 TGAATTGTCTAATACACCGAGCAT 58.330 37.500 0.00 0.00 38.00 3.79
5235 8614 6.875195 CCATGAAATGTATTGCTTTGGACTTT 59.125 34.615 0.00 0.00 44.81 2.66
5331 8710 8.303876 TGGCAGAAAAGTAATCCAGAAAAATAC 58.696 33.333 0.00 0.00 0.00 1.89
5345 8724 8.349983 TCCAGAAAAATACTACAGTTTTGCTTC 58.650 33.333 0.00 0.00 34.71 3.86
5434 8813 6.933514 AAAAATTCTTAGGCCCATCTCAAA 57.066 33.333 0.00 0.00 0.00 2.69
5435 8814 6.933514 AAAATTCTTAGGCCCATCTCAAAA 57.066 33.333 0.00 0.00 0.00 2.44
5436 8815 6.933514 AAATTCTTAGGCCCATCTCAAAAA 57.066 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.295292 GGTCCTCCTTTCAAGTAATTGCATTT 60.295 38.462 0.00 0.00 0.00 2.32
112 113 1.370810 TGGCACAAGCGTGATGAGA 59.629 52.632 6.65 0.00 46.80 3.27
362 419 6.377146 TCCTGAAGTAATTAAACTGGATTGGC 59.623 38.462 8.33 0.00 0.00 4.52
400 457 5.525378 CCTCTAGACATCATTAACCAAGCAC 59.475 44.000 0.00 0.00 0.00 4.40
460 517 6.154534 TCAAAATTCTACACCTAGCTCTAGCA 59.845 38.462 4.54 0.00 45.16 3.49
477 534 4.611581 GCGTGTCAAGTCTCCTCAAAATTC 60.612 45.833 0.00 0.00 0.00 2.17
593 655 3.357079 CCACACCGGCTTCTGTGC 61.357 66.667 15.58 0.00 37.12 4.57
733 795 4.640201 CCTTCCATTCAATTGATGTACGGT 59.360 41.667 9.40 0.00 0.00 4.83
752 814 0.470268 ACCGGCTATCTCTCCCCTTC 60.470 60.000 0.00 0.00 0.00 3.46
822 928 3.147595 TGCCACGATCCTCCTCCG 61.148 66.667 0.00 0.00 0.00 4.63
918 1030 4.594920 TCTTCAGTGGGAGACAGATTTTCT 59.405 41.667 0.00 0.00 0.00 2.52
920 1032 4.349342 AGTCTTCAGTGGGAGACAGATTTT 59.651 41.667 21.68 5.26 34.06 1.82
927 1039 2.289133 GGTTCAGTCTTCAGTGGGAGAC 60.289 54.545 15.57 15.57 0.00 3.36
931 1043 0.764890 TGGGTTCAGTCTTCAGTGGG 59.235 55.000 0.00 0.00 0.00 4.61
1110 1226 2.573869 CGAGGAGCGGCAGAAGAA 59.426 61.111 1.45 0.00 36.03 2.52
1206 1322 1.284313 CCTCCTTCCTTTCAGGCTCT 58.716 55.000 0.00 0.00 34.61 4.09
1226 1342 1.964223 TCGCAGTCATATCTTCCTCCC 59.036 52.381 0.00 0.00 0.00 4.30
1235 1351 2.724977 CGTACCCATCGCAGTCATAT 57.275 50.000 0.00 0.00 0.00 1.78
1388 1505 3.181440 TGCAGGATGTCAAGAAAGAACCT 60.181 43.478 0.00 0.00 39.31 3.50
1401 1518 1.597854 CGGTGTGTGTGCAGGATGT 60.598 57.895 0.00 0.00 39.31 3.06
1416 1533 1.414181 CATAGTCCAGAAGCATCCGGT 59.586 52.381 0.00 0.00 0.00 5.28
1425 1542 2.504175 GGCCTTGTACCATAGTCCAGAA 59.496 50.000 0.00 0.00 0.00 3.02
1450 1567 6.189859 AACACCATCTTAACATGGATGATGT 58.810 36.000 15.86 6.67 45.44 3.06
1452 1569 6.891361 TCAAACACCATCTTAACATGGATGAT 59.109 34.615 15.86 3.77 45.79 2.45
1549 1670 9.914131 GGAATTTCTAGCACAAAATCTTTAGTT 57.086 29.630 0.00 0.00 0.00 2.24
1550 1671 8.237267 CGGAATTTCTAGCACAAAATCTTTAGT 58.763 33.333 0.00 0.00 0.00 2.24
1552 1673 8.330466 TCGGAATTTCTAGCACAAAATCTTTA 57.670 30.769 0.00 0.00 0.00 1.85
1585 1713 5.490159 TGCAGATTGACTACACATGAATGA 58.510 37.500 0.00 0.00 0.00 2.57
1716 1844 8.423349 TGATCAAGAAATCAACAAACTTTCCAT 58.577 29.630 0.00 0.00 32.80 3.41
1751 1880 2.430694 TCCGTTGGACCTGATGATACAG 59.569 50.000 0.00 0.00 37.61 2.74
1752 1881 2.462723 TCCGTTGGACCTGATGATACA 58.537 47.619 0.00 0.00 0.00 2.29
1753 1882 3.118738 AGTTCCGTTGGACCTGATGATAC 60.119 47.826 0.00 0.00 0.00 2.24
1765 1894 2.644992 GGCAGCAAGTTCCGTTGG 59.355 61.111 0.00 0.00 0.00 3.77
1770 1899 3.365265 CCCACGGCAGCAAGTTCC 61.365 66.667 0.00 0.00 0.00 3.62
1801 1930 4.918810 ACTTGGACACCAAATTGAAGAC 57.081 40.909 4.78 0.00 43.44 3.01
2099 2228 7.322664 TCAATGTTCCAGATCCAAAAATAAGC 58.677 34.615 0.00 0.00 0.00 3.09
2135 2264 4.580167 GTCGTACATACCACTGGTATACCA 59.420 45.833 23.23 23.23 45.97 3.25
2155 2284 6.296365 TGGTGACTATCGATAAAGTAGTCG 57.704 41.667 16.56 2.60 44.50 4.18
2170 2299 9.914834 ATAATAAATGTTTAAGCCTGGTGACTA 57.085 29.630 0.00 0.00 0.00 2.59
2211 2340 6.863126 GCAGCTAAACACATAACAAATTGAGT 59.137 34.615 0.00 0.00 0.00 3.41
2228 2357 9.177608 ACATTTATCTGAACATTAGCAGCTAAA 57.822 29.630 18.87 0.92 37.22 1.85
2357 2487 4.809958 AGAGATGAGAAAGCATGATTGACG 59.190 41.667 0.00 0.00 0.00 4.35
2399 2529 2.014857 GTTCCAGGGGCGATTTAGTTC 58.985 52.381 0.00 0.00 0.00 3.01
2519 2915 3.497942 GCACCGGGGAATCCTGTTTATAT 60.498 47.826 8.67 0.00 37.74 0.86
2520 2916 2.158726 GCACCGGGGAATCCTGTTTATA 60.159 50.000 8.67 0.00 37.74 0.98
2537 2933 1.299926 CTCGGCTGGTATACGCACC 60.300 63.158 5.31 1.74 39.20 5.01
2756 3152 3.623060 GCATATAGGGCATATGTGTTCCG 59.377 47.826 15.60 0.00 45.74 4.30
2818 3214 4.383173 TCATGTACATATTGCAGCAGGAG 58.617 43.478 8.32 0.00 0.00 3.69
3025 3450 6.102663 GCAGATGACTAAAAGTAAGAGCTGA 58.897 40.000 0.00 0.00 0.00 4.26
3329 3755 1.101635 TCCTACCGATCAGCAGTCCG 61.102 60.000 0.00 0.00 0.00 4.79
3383 3809 1.163554 CTTCCCTTGCAGCAAGAGAC 58.836 55.000 32.94 0.00 43.42 3.36
3479 3905 2.236146 TGTACATACCTGTCCAGCAAGG 59.764 50.000 0.00 0.00 36.79 3.61
3936 4362 8.894768 AGATTTAATATTGGAGCAGTGAGTAC 57.105 34.615 0.00 0.00 0.00 2.73
3993 4419 1.735360 GACCACAAAAGCAGCAGCA 59.265 52.632 3.17 0.00 45.49 4.41
3998 4424 0.523072 CCCATCGACCACAAAAGCAG 59.477 55.000 0.00 0.00 0.00 4.24
4184 4610 1.335051 GCAACAAGAAGGAAAGCCGAC 60.335 52.381 0.00 0.00 39.96 4.79
4196 4622 0.036732 ATTCAGGAGCGGCAACAAGA 59.963 50.000 1.45 0.00 0.00 3.02
4342 4768 7.391833 AGAAAATTACCTGAAGTCATCAAGGTC 59.608 37.037 0.00 0.00 39.11 3.85
4372 4798 1.341383 CCTTTGCTCCCTAACCTGCAT 60.341 52.381 0.00 0.00 35.27 3.96
4420 4846 4.905866 CACAATTTGTCGCTTAAGTCAGTG 59.094 41.667 4.02 3.24 0.00 3.66
4430 4856 2.496899 AGGGATCACAATTTGTCGCT 57.503 45.000 0.00 0.08 0.00 4.93
4439 4865 8.937835 TCTCATCAAATTATCTAGGGATCACAA 58.062 33.333 0.00 0.00 33.71 3.33
4567 4994 1.961394 ACTCTAGTGACAACGCCTTGA 59.039 47.619 2.26 0.00 0.00 3.02
4584 5011 2.260481 GTGCTTCTACGGCTACAACTC 58.740 52.381 0.00 0.00 0.00 3.01
4628 5055 3.119849 CCAACTACCTGTAGCATTTGCAC 60.120 47.826 5.20 2.26 45.16 4.57
4719 5146 6.040504 TGCTTCTACGGTTACACATCATCTAT 59.959 38.462 0.00 0.00 0.00 1.98
4786 5213 6.094061 GTGTACAAAACAGCTAAAACCAACA 58.906 36.000 0.00 0.00 39.29 3.33
4887 5314 0.858961 GAGCATAAAAGCGCGCACAG 60.859 55.000 35.10 16.95 40.15 3.66
4958 5386 3.070878 CCCCAAAAGGCTAAAGCTTTGAA 59.929 43.478 22.02 1.38 39.53 2.69
4986 5414 9.074576 GGTTTCTTTAGAGGAATAAAGGAAACA 57.925 33.333 17.83 1.59 43.27 2.83
4987 5415 9.074576 TGGTTTCTTTAGAGGAATAAAGGAAAC 57.925 33.333 7.91 7.91 43.73 2.78
4988 5416 9.074576 GTGGTTTCTTTAGAGGAATAAAGGAAA 57.925 33.333 2.34 0.00 40.35 3.13
4991 5419 7.121315 CAGGTGGTTTCTTTAGAGGAATAAAGG 59.879 40.741 6.43 0.00 41.23 3.11
4993 5421 6.946009 CCAGGTGGTTTCTTTAGAGGAATAAA 59.054 38.462 0.00 0.00 0.00 1.40
5014 8393 1.415659 GAGAGGACCATCATCACCAGG 59.584 57.143 0.00 0.00 28.01 4.45
5015 8394 2.113807 TGAGAGGACCATCATCACCAG 58.886 52.381 0.00 0.00 28.01 4.00
5021 8400 1.842562 CCAAGGTGAGAGGACCATCAT 59.157 52.381 3.02 0.00 38.63 2.45
5029 8408 5.557576 TTGATATGATCCAAGGTGAGAGG 57.442 43.478 0.00 0.00 0.00 3.69
5077 8456 0.744414 CGGGTGGTGAGCAATCGATT 60.744 55.000 4.39 4.39 0.00 3.34
5078 8457 1.153369 CGGGTGGTGAGCAATCGAT 60.153 57.895 0.00 0.00 0.00 3.59
5110 8489 6.884280 AGGAAGATGAAGGTGTTTTTACAG 57.116 37.500 0.00 0.00 0.00 2.74
5124 8503 9.383519 GTGTATTAGACAATTCAAGGAAGATGA 57.616 33.333 0.00 0.00 40.66 2.92
5144 8523 4.406648 TTGAGATGATGCTCGGTGTATT 57.593 40.909 0.00 0.00 37.73 1.89
5302 8681 4.922206 TCTGGATTACTTTTCTGCCACAT 58.078 39.130 0.00 0.00 0.00 3.21
5331 8710 5.912396 TGCATAAAACGAAGCAAAACTGTAG 59.088 36.000 0.00 0.00 33.48 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.