Multiple sequence alignment - TraesCS5B01G148300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G148300 chr5B 100.000 4447 0 0 1 4447 276666751 276671197 0.000000e+00 8213.0
1 TraesCS5B01G148300 chr5B 87.889 289 34 1 525 813 688930584 688930297 5.510000e-89 339.0
2 TraesCS5B01G148300 chr5B 90.654 107 10 0 525 631 689031556 689031450 4.640000e-30 143.0
3 TraesCS5B01G148300 chr5B 94.118 85 5 0 2227 2311 503987208 503987292 3.610000e-26 130.0
4 TraesCS5B01G148300 chr5B 93.023 86 6 0 2226 2311 704531943 704532028 4.670000e-25 126.0
5 TraesCS5B01G148300 chr5B 92.045 88 7 0 2226 2313 492602019 492601932 1.680000e-24 124.0
6 TraesCS5B01G148300 chr5B 89.362 94 10 0 2227 2320 621238806 621238713 7.810000e-23 119.0
7 TraesCS5B01G148300 chr5B 88.542 96 9 2 2227 2322 682178681 682178588 1.010000e-21 115.0
8 TraesCS5B01G148300 chr5B 85.057 87 13 0 727 813 121525664 121525578 6.130000e-14 89.8
9 TraesCS5B01G148300 chr5A 94.444 1260 59 2 2310 3558 327579027 327580286 0.000000e+00 1929.0
10 TraesCS5B01G148300 chr5A 93.430 1035 36 12 813 1817 327573636 327574668 0.000000e+00 1506.0
11 TraesCS5B01G148300 chr5A 94.857 525 23 3 1 522 496532759 496533282 0.000000e+00 817.0
12 TraesCS5B01G148300 chr5A 87.380 626 39 6 1 625 23180129 23179543 0.000000e+00 682.0
13 TraesCS5B01G148300 chr5A 92.366 262 14 2 813 1070 327441079 327441338 7.030000e-98 368.0
14 TraesCS5B01G148300 chr5A 92.366 262 14 2 813 1070 327550820 327551079 7.030000e-98 368.0
15 TraesCS5B01G148300 chr5A 93.103 87 6 0 2225 2311 612161472 612161558 1.300000e-25 128.0
16 TraesCS5B01G148300 chr5A 91.954 87 7 0 2225 2311 612161560 612161474 6.040000e-24 122.0
17 TraesCS5B01G148300 chr5A 91.463 82 7 0 2227 2308 615182347 615182428 3.640000e-21 113.0
18 TraesCS5B01G148300 chr5A 95.652 69 3 0 1817 1885 327578424 327578492 1.310000e-20 111.0
19 TraesCS5B01G148300 chr5D 93.533 1268 63 8 2310 3558 229152701 229151434 0.000000e+00 1869.0
20 TraesCS5B01G148300 chr5D 95.379 1082 40 2 812 1885 229154214 229153135 0.000000e+00 1712.0
21 TraesCS5B01G148300 chr5D 93.103 348 21 3 1883 2229 229153044 229152699 1.430000e-139 507.0
22 TraesCS5B01G148300 chr5D 79.167 408 74 9 2810 3211 75761013 75760611 5.670000e-69 272.0
23 TraesCS5B01G148300 chr5D 100.000 30 0 0 2227 2256 30555055 30555084 6.210000e-04 56.5
24 TraesCS5B01G148300 chr2A 90.768 899 66 13 3559 4447 680738260 680737369 0.000000e+00 1184.0
25 TraesCS5B01G148300 chr2A 90.506 811 68 7 1 807 1673369 1674174 0.000000e+00 1062.0
26 TraesCS5B01G148300 chr2A 87.152 646 81 2 1074 1718 22573546 22572902 0.000000e+00 732.0
27 TraesCS5B01G148300 chr2A 79.347 949 164 24 2602 3540 23971584 23972510 4.850000e-179 638.0
28 TraesCS5B01G148300 chr2A 78.535 969 182 19 2603 3555 23960065 23961023 8.180000e-172 614.0
29 TraesCS5B01G148300 chr2A 86.620 284 30 6 1883 2160 420682891 420682610 1.550000e-79 307.0
30 TraesCS5B01G148300 chr2A 79.683 379 65 12 1102 1474 23966705 23967077 3.410000e-66 263.0
31 TraesCS5B01G148300 chr4A 91.945 807 50 3 1 807 668706658 668707449 0.000000e+00 1116.0
32 TraesCS5B01G148300 chr4A 86.585 902 97 18 3558 4447 469100285 469099396 0.000000e+00 974.0
33 TraesCS5B01G148300 chr4A 86.564 841 97 14 3559 4396 235666012 235666839 0.000000e+00 913.0
34 TraesCS5B01G148300 chr4A 89.749 439 41 4 371 807 668948889 668949325 3.890000e-155 558.0
35 TraesCS5B01G148300 chr4A 95.575 339 15 0 1 339 668943147 668943485 1.090000e-150 544.0
36 TraesCS5B01G148300 chr4A 88.380 284 24 7 1883 2160 166730243 166729963 2.560000e-87 333.0
37 TraesCS5B01G148300 chr7A 89.164 849 68 17 3559 4396 367664448 367665283 0.000000e+00 1037.0
38 TraesCS5B01G148300 chr7A 87.943 282 29 4 1883 2160 243645613 243645893 1.190000e-85 327.0
39 TraesCS5B01G148300 chr7A 86.477 281 35 2 1883 2160 204736766 204737046 5.590000e-79 305.0
40 TraesCS5B01G148300 chr7A 90.588 85 7 1 2227 2311 553036688 553036605 1.310000e-20 111.0
41 TraesCS5B01G148300 chr1B 88.201 856 71 18 3559 4397 422485354 422484512 0.000000e+00 994.0
42 TraesCS5B01G148300 chr1B 94.982 558 27 1 3552 4109 159652316 159652872 0.000000e+00 874.0
43 TraesCS5B01G148300 chr1B 94.118 85 5 0 2227 2311 566250600 566250516 3.610000e-26 130.0
44 TraesCS5B01G148300 chr1B 92.941 85 6 0 2227 2311 549520144 549520060 1.680000e-24 124.0
45 TraesCS5B01G148300 chr1B 89.247 93 8 2 2220 2311 118514550 118514641 1.010000e-21 115.0
46 TraesCS5B01G148300 chr1B 87.912 91 10 1 2222 2311 551176572 551176482 6.080000e-19 106.0
47 TraesCS5B01G148300 chr1B 88.462 78 9 0 2226 2303 566025537 566025614 1.320000e-15 95.3
48 TraesCS5B01G148300 chr1D 88.889 810 80 7 1 807 483427043 483427845 0.000000e+00 989.0
49 TraesCS5B01G148300 chr1D 87.231 650 59 19 140 787 271301709 271302336 0.000000e+00 719.0
50 TraesCS5B01G148300 chr1D 84.698 281 40 3 1883 2160 226450019 226449739 1.220000e-70 278.0
51 TraesCS5B01G148300 chr1D 82.624 282 45 3 1883 2160 483259592 483259311 3.440000e-61 246.0
52 TraesCS5B01G148300 chr1D 80.072 276 38 9 1889 2160 58756249 58755987 5.870000e-44 189.0
53 TraesCS5B01G148300 chr1D 79.343 213 42 2 595 807 483426047 483425837 9.970000e-32 148.0
54 TraesCS5B01G148300 chr1D 82.787 122 15 3 1883 2001 58756469 58756351 2.190000e-18 104.0
55 TraesCS5B01G148300 chr1D 75.897 195 35 9 1883 2070 430867230 430867419 6.130000e-14 89.8
56 TraesCS5B01G148300 chr6B 87.927 820 67 19 1 807 248394441 248395241 0.000000e+00 937.0
57 TraesCS5B01G148300 chr6B 95.144 556 27 0 3554 4109 634303483 634302928 0.000000e+00 878.0
58 TraesCS5B01G148300 chr6B 84.342 281 41 2 1883 2160 9429268 9429548 5.670000e-69 272.0
59 TraesCS5B01G148300 chr6B 89.412 85 8 1 2227 2311 535996868 535996785 6.080000e-19 106.0
60 TraesCS5B01G148300 chr2D 86.215 856 85 22 3559 4397 448966614 448967453 0.000000e+00 896.0
61 TraesCS5B01G148300 chr2D 85.652 690 94 3 1030 1718 21555921 21555236 0.000000e+00 721.0
62 TraesCS5B01G148300 chr2D 85.127 632 92 2 1088 1718 21057675 21057045 0.000000e+00 645.0
63 TraesCS5B01G148300 chr2D 83.032 719 109 8 1028 1740 22155289 22156000 1.350000e-179 640.0
64 TraesCS5B01G148300 chr2D 78.683 957 174 20 2604 3540 22145329 22146275 1.060000e-170 610.0
65 TraesCS5B01G148300 chr2D 86.508 252 28 5 1883 2130 624139840 624140089 5.670000e-69 272.0
66 TraesCS5B01G148300 chr4D 95.471 552 24 1 3559 4109 472113781 472114332 0.000000e+00 880.0
67 TraesCS5B01G148300 chr4D 86.076 237 23 8 1883 2114 301245059 301245290 3.440000e-61 246.0
68 TraesCS5B01G148300 chr4D 80.272 294 38 14 1883 2160 107436913 107436624 2.100000e-48 204.0
69 TraesCS5B01G148300 chr4D 85.350 157 19 3 1972 2125 503174494 503174649 4.600000e-35 159.0
70 TraesCS5B01G148300 chr4D 100.000 30 0 0 2227 2256 436892720 436892691 6.210000e-04 56.5
71 TraesCS5B01G148300 chr7D 92.208 462 36 0 295 756 511340355 511340816 0.000000e+00 654.0
72 TraesCS5B01G148300 chr7D 93.916 263 15 1 7 268 511340097 511340359 3.220000e-106 396.0
73 TraesCS5B01G148300 chr7D 84.698 281 39 4 1883 2160 64180778 64181057 1.220000e-70 278.0
74 TraesCS5B01G148300 chr7D 84.043 282 41 3 1883 2160 555059224 555059505 7.330000e-68 268.0
75 TraesCS5B01G148300 chr7D 83.133 249 40 2 559 807 511339179 511338933 4.480000e-55 226.0
76 TraesCS5B01G148300 chr7D 90.588 85 8 0 2227 2311 180445011 180444927 3.640000e-21 113.0
77 TraesCS5B01G148300 chrUn 99.710 345 0 1 4103 4447 343088088 343088431 8.120000e-177 630.0
78 TraesCS5B01G148300 chrUn 78.866 194 36 4 1936 2125 10129706 10129898 4.670000e-25 126.0
79 TraesCS5B01G148300 chrUn 74.525 263 50 14 1883 2135 137845597 137845852 1.020000e-16 99.0
80 TraesCS5B01G148300 chr2B 79.515 908 164 16 2602 3497 35276758 35277655 1.050000e-175 627.0
81 TraesCS5B01G148300 chr2B 78.261 966 189 17 2602 3555 35284169 35285125 6.360000e-168 601.0
82 TraesCS5B01G148300 chr2B 88.845 502 31 7 1 498 680600417 680599937 1.070000e-165 593.0
83 TraesCS5B01G148300 chr2B 84.969 479 66 4 1061 1539 35274800 35275272 8.650000e-132 481.0
84 TraesCS5B01G148300 chr2B 77.681 802 157 16 2767 3555 35309191 35309983 1.870000e-128 470.0
85 TraesCS5B01G148300 chr2B 76.734 894 174 19 2602 3487 35312575 35313442 6.740000e-128 468.0
86 TraesCS5B01G148300 chr2B 77.317 410 84 5 1301 1710 35139199 35139599 2.670000e-57 233.0
87 TraesCS5B01G148300 chr7B 97.043 372 6 4 4077 4447 452177973 452178340 4.890000e-174 621.0
88 TraesCS5B01G148300 chr7B 91.592 333 26 2 1 332 709374757 709375088 4.050000e-125 459.0
89 TraesCS5B01G148300 chr7B 90.377 239 23 0 336 574 709375249 709375487 9.290000e-82 315.0
90 TraesCS5B01G148300 chr7B 76.596 611 113 20 1102 1706 681580400 681579814 4.320000e-80 309.0
91 TraesCS5B01G148300 chr7B 92.045 88 7 0 2224 2311 698886786 698886699 1.680000e-24 124.0
92 TraesCS5B01G148300 chr1A 97.527 364 5 3 4085 4447 459749301 459749661 1.760000e-173 619.0
93 TraesCS5B01G148300 chr1A 84.452 283 39 4 1883 2160 293712654 293712372 1.580000e-69 274.0
94 TraesCS5B01G148300 chr3A 87.986 283 27 5 1883 2160 14291390 14291110 1.190000e-85 327.0
95 TraesCS5B01G148300 chr3A 85.000 280 40 2 1883 2160 102531170 102530891 2.620000e-72 283.0
96 TraesCS5B01G148300 chr3A 93.182 88 6 0 2224 2311 696373430 696373517 3.610000e-26 130.0
97 TraesCS5B01G148300 chr3A 93.103 87 6 0 2226 2312 69643771 69643857 1.300000e-25 128.0
98 TraesCS5B01G148300 chr3A 91.111 90 8 0 2222 2311 696373522 696373433 6.040000e-24 122.0
99 TraesCS5B01G148300 chr3A 91.765 85 7 0 2227 2311 69643856 69643772 7.810000e-23 119.0
100 TraesCS5B01G148300 chr6A 88.306 248 24 4 1883 2126 504476028 504475782 4.350000e-75 292.0
101 TraesCS5B01G148300 chr6A 87.072 263 24 9 1888 2146 565342939 565342683 5.630000e-74 289.0
102 TraesCS5B01G148300 chr6A 91.667 48 4 0 2226 2273 567941106 567941153 2.870000e-07 67.6
103 TraesCS5B01G148300 chr6A 80.612 98 6 7 2227 2311 356209092 356208995 3.710000e-06 63.9
104 TraesCS5B01G148300 chr6A 92.308 39 3 0 2227 2265 356208995 356209033 6.210000e-04 56.5
105 TraesCS5B01G148300 chr3B 85.053 281 39 2 1883 2160 254192898 254193178 2.620000e-72 283.0
106 TraesCS5B01G148300 chr3B 91.011 89 8 0 2223 2311 242889492 242889580 2.170000e-23 121.0
107 TraesCS5B01G148300 chr6D 84.561 285 34 8 1883 2160 102490604 102490323 1.580000e-69 274.0
108 TraesCS5B01G148300 chr6D 83.267 251 37 4 1883 2130 461683291 461683539 4.480000e-55 226.0
109 TraesCS5B01G148300 chr6D 89.394 132 10 3 1997 2125 321773559 321773689 3.560000e-36 163.0
110 TraesCS5B01G148300 chr6D 77.041 196 35 8 1883 2072 85734847 85735038 2.190000e-18 104.0
111 TraesCS5B01G148300 chr3D 84.397 282 40 3 1883 2160 475549939 475549658 1.580000e-69 274.0
112 TraesCS5B01G148300 chr3D 82.979 282 38 7 1883 2160 565051402 565051677 3.440000e-61 246.0
113 TraesCS5B01G148300 chr4B 92.188 192 15 0 1 192 58055602 58055793 5.670000e-69 272.0
114 TraesCS5B01G148300 chr4B 94.340 106 6 0 380 485 58055942 58056047 3.560000e-36 163.0
115 TraesCS5B01G148300 chr4B 97.297 74 1 1 191 263 58055868 58055941 1.680000e-24 124.0
116 TraesCS5B01G148300 chr4B 90.588 85 8 0 2227 2311 607645152 607645236 3.640000e-21 113.0
117 TraesCS5B01G148300 chr4B 94.872 39 2 0 2227 2265 401111068 401111030 1.340000e-05 62.1
118 TraesCS5B01G148300 chr4B 100.000 31 0 0 2227 2257 64610920 64610890 1.730000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G148300 chr5B 276666751 276671197 4446 False 8213.000000 8213 100.000000 1 4447 1 chr5B.!!$F1 4446
1 TraesCS5B01G148300 chr5A 327573636 327580286 6650 False 1182.000000 1929 94.508667 813 3558 3 chr5A.!!$F6 2745
2 TraesCS5B01G148300 chr5A 496532759 496533282 523 False 817.000000 817 94.857000 1 522 1 chr5A.!!$F3 521
3 TraesCS5B01G148300 chr5A 23179543 23180129 586 True 682.000000 682 87.380000 1 625 1 chr5A.!!$R1 624
4 TraesCS5B01G148300 chr5D 229151434 229154214 2780 True 1362.666667 1869 94.005000 812 3558 3 chr5D.!!$R2 2746
5 TraesCS5B01G148300 chr2A 680737369 680738260 891 True 1184.000000 1184 90.768000 3559 4447 1 chr2A.!!$R3 888
6 TraesCS5B01G148300 chr2A 1673369 1674174 805 False 1062.000000 1062 90.506000 1 807 1 chr2A.!!$F1 806
7 TraesCS5B01G148300 chr2A 22572902 22573546 644 True 732.000000 732 87.152000 1074 1718 1 chr2A.!!$R1 644
8 TraesCS5B01G148300 chr2A 23971584 23972510 926 False 638.000000 638 79.347000 2602 3540 1 chr2A.!!$F4 938
9 TraesCS5B01G148300 chr2A 23960065 23961023 958 False 614.000000 614 78.535000 2603 3555 1 chr2A.!!$F2 952
10 TraesCS5B01G148300 chr4A 668706658 668707449 791 False 1116.000000 1116 91.945000 1 807 1 chr4A.!!$F2 806
11 TraesCS5B01G148300 chr4A 469099396 469100285 889 True 974.000000 974 86.585000 3558 4447 1 chr4A.!!$R2 889
12 TraesCS5B01G148300 chr4A 235666012 235666839 827 False 913.000000 913 86.564000 3559 4396 1 chr4A.!!$F1 837
13 TraesCS5B01G148300 chr7A 367664448 367665283 835 False 1037.000000 1037 89.164000 3559 4396 1 chr7A.!!$F3 837
14 TraesCS5B01G148300 chr1B 422484512 422485354 842 True 994.000000 994 88.201000 3559 4397 1 chr1B.!!$R1 838
15 TraesCS5B01G148300 chr1B 159652316 159652872 556 False 874.000000 874 94.982000 3552 4109 1 chr1B.!!$F2 557
16 TraesCS5B01G148300 chr1D 483427043 483427845 802 False 989.000000 989 88.889000 1 807 1 chr1D.!!$F3 806
17 TraesCS5B01G148300 chr1D 271301709 271302336 627 False 719.000000 719 87.231000 140 787 1 chr1D.!!$F1 647
18 TraesCS5B01G148300 chr6B 248394441 248395241 800 False 937.000000 937 87.927000 1 807 1 chr6B.!!$F2 806
19 TraesCS5B01G148300 chr6B 634302928 634303483 555 True 878.000000 878 95.144000 3554 4109 1 chr6B.!!$R2 555
20 TraesCS5B01G148300 chr2D 448966614 448967453 839 False 896.000000 896 86.215000 3559 4397 1 chr2D.!!$F3 838
21 TraesCS5B01G148300 chr2D 21555236 21555921 685 True 721.000000 721 85.652000 1030 1718 1 chr2D.!!$R2 688
22 TraesCS5B01G148300 chr2D 21057045 21057675 630 True 645.000000 645 85.127000 1088 1718 1 chr2D.!!$R1 630
23 TraesCS5B01G148300 chr2D 22155289 22156000 711 False 640.000000 640 83.032000 1028 1740 1 chr2D.!!$F2 712
24 TraesCS5B01G148300 chr2D 22145329 22146275 946 False 610.000000 610 78.683000 2604 3540 1 chr2D.!!$F1 936
25 TraesCS5B01G148300 chr4D 472113781 472114332 551 False 880.000000 880 95.471000 3559 4109 1 chr4D.!!$F2 550
26 TraesCS5B01G148300 chr7D 511340097 511340816 719 False 525.000000 654 93.062000 7 756 2 chr7D.!!$F3 749
27 TraesCS5B01G148300 chr2B 35284169 35285125 956 False 601.000000 601 78.261000 2602 3555 1 chr2B.!!$F2 953
28 TraesCS5B01G148300 chr2B 35274800 35277655 2855 False 554.000000 627 82.242000 1061 3497 2 chr2B.!!$F3 2436
29 TraesCS5B01G148300 chr2B 35309191 35313442 4251 False 469.000000 470 77.207500 2602 3555 2 chr2B.!!$F4 953
30 TraesCS5B01G148300 chr7B 709374757 709375487 730 False 387.000000 459 90.984500 1 574 2 chr7B.!!$F2 573
31 TraesCS5B01G148300 chr7B 681579814 681580400 586 True 309.000000 309 76.596000 1102 1706 1 chr7B.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 926 0.389391 CTACCGCCGGAGACAATGAT 59.611 55.0 11.71 0.0 0.00 2.45 F
911 1120 0.542702 AACTTTGACCATGCCAGGGG 60.543 55.0 0.00 0.0 0.00 4.79 F
1844 6942 0.816373 TGCACACAACACACATGCTT 59.184 45.0 0.00 0.0 37.20 3.91 F
2859 8310 0.038166 ATGGACTGTGCAATTCCGGT 59.962 50.0 5.98 0.0 31.38 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 7784 0.598562 GGACTCGACTCAGCTCACAA 59.401 55.000 0.0 0.0 0.00 3.33 R
2546 7883 1.202879 ACCCAATGAAGCAGAACCGAA 60.203 47.619 0.0 0.0 0.00 4.30 R
3109 8579 2.034558 CCACAGTGGGTAACAAAGCAAG 59.965 50.000 12.4 0.0 39.74 4.01 R
3924 9404 0.105964 CACACAAGGTGTTCCTCCGA 59.894 55.000 0.0 0.0 45.08 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.736282 CGCACGTCTGCCACACATA 60.736 57.895 0.00 0.00 40.73 2.29
413 588 6.686630 CCAAGGTGAGATATACTTCTGCTAG 58.313 44.000 0.00 0.00 0.00 3.42
554 741 1.620323 GATTGGCTGGAATAATGGCCC 59.380 52.381 0.00 0.00 43.50 5.80
557 744 2.564721 GCTGGAATAATGGCCCGGC 61.565 63.158 0.00 0.00 44.05 6.13
590 788 1.134788 CAAGTCTGGCGGTAAGGTAGG 60.135 57.143 0.00 0.00 0.00 3.18
644 842 2.604914 CTCTGTACATAGCAAACGCCAG 59.395 50.000 0.00 0.00 0.00 4.85
690 888 2.038387 ATTGATTGTGACGGTAGCCC 57.962 50.000 0.00 0.00 0.00 5.19
713 921 2.842188 TTAGCCTACCGCCGGAGACA 62.842 60.000 11.71 0.00 38.78 3.41
718 926 0.389391 CTACCGCCGGAGACAATGAT 59.611 55.000 11.71 0.00 0.00 2.45
810 1019 6.641176 AAAGTCAAAACACGAAATTTGTCC 57.359 33.333 0.00 0.00 37.68 4.02
839 1048 6.317663 TGGCTGAGCATGGATATATACAAT 57.682 37.500 6.82 0.00 0.00 2.71
902 1111 1.435515 GCGCCACAAACTTTGACCA 59.564 52.632 8.55 0.00 0.00 4.02
911 1120 0.542702 AACTTTGACCATGCCAGGGG 60.543 55.000 0.00 0.00 0.00 4.79
939 1148 4.320456 CGCCACACTGCCTGGACT 62.320 66.667 0.00 0.00 0.00 3.85
992 1232 4.770010 ACACCAAAGAAACCAAGAACAGAA 59.230 37.500 0.00 0.00 0.00 3.02
999 1239 7.410120 AAGAAACCAAGAACAGAACTGAAAT 57.590 32.000 8.87 0.00 0.00 2.17
1006 1246 6.404074 CCAAGAACAGAACTGAAATATGGAGC 60.404 42.308 8.87 0.00 0.00 4.70
1093 1336 3.151022 GAGTCCTGCTCCTCCCGG 61.151 72.222 0.00 0.00 38.27 5.73
1455 1698 4.459089 GCCGCGGCCTTCTTCTCT 62.459 66.667 39.89 0.00 34.56 3.10
1668 3004 3.518998 CTGGAGGACGCCGACGAT 61.519 66.667 0.00 0.00 43.93 3.73
1806 3148 6.928492 AGACTTTCTCTGTAAGCTTGAAGAAG 59.072 38.462 9.86 8.65 0.00 2.85
1844 6942 0.816373 TGCACACAACACACATGCTT 59.184 45.000 0.00 0.00 37.20 3.91
2030 7327 6.054295 AGAATTTCTAGCATCCACTCACATC 58.946 40.000 0.00 0.00 0.00 3.06
2084 7381 6.369005 TGCAATCAAACAACACAAAAACTTG 58.631 32.000 0.00 0.00 0.00 3.16
2088 7385 8.920665 CAATCAAACAACACAAAAACTTGTAGA 58.079 29.630 0.00 0.00 33.17 2.59
2134 7452 6.039270 TCAATCCTATGTTTTTCTTATGCCCG 59.961 38.462 0.00 0.00 0.00 6.13
2137 7455 1.621992 TGTTTTTCTTATGCCCGGCA 58.378 45.000 16.17 16.17 44.86 5.69
2151 7469 1.339929 CCCGGCATTTTATAACCCTGC 59.660 52.381 0.00 5.07 0.00 4.85
2215 7533 7.499232 AGCCAATAACTCAATATAGAACACCAC 59.501 37.037 0.00 0.00 0.00 4.16
2226 7544 9.436957 CAATATAGAACACCACTGTAGTTTTCT 57.563 33.333 11.43 11.43 0.00 2.52
2240 7558 6.206395 GTAGTTTTCTACTCCCTCTGTACC 57.794 45.833 0.00 0.00 46.53 3.34
2241 7559 3.762823 AGTTTTCTACTCCCTCTGTACCG 59.237 47.826 0.00 0.00 28.23 4.02
2242 7560 3.726557 TTTCTACTCCCTCTGTACCGA 57.273 47.619 0.00 0.00 0.00 4.69
2243 7561 3.726557 TTCTACTCCCTCTGTACCGAA 57.273 47.619 0.00 0.00 0.00 4.30
2244 7562 3.726557 TCTACTCCCTCTGTACCGAAA 57.273 47.619 0.00 0.00 0.00 3.46
2245 7563 4.246712 TCTACTCCCTCTGTACCGAAAT 57.753 45.455 0.00 0.00 0.00 2.17
2246 7564 5.378230 TCTACTCCCTCTGTACCGAAATA 57.622 43.478 0.00 0.00 0.00 1.40
2247 7565 5.374921 TCTACTCCCTCTGTACCGAAATAG 58.625 45.833 0.00 0.00 0.00 1.73
2248 7566 3.978610 ACTCCCTCTGTACCGAAATAGT 58.021 45.455 0.00 0.00 0.00 2.12
2249 7567 4.351127 ACTCCCTCTGTACCGAAATAGTT 58.649 43.478 0.00 0.00 0.00 2.24
2250 7568 4.159879 ACTCCCTCTGTACCGAAATAGTTG 59.840 45.833 0.00 0.00 0.00 3.16
2251 7569 4.091549 TCCCTCTGTACCGAAATAGTTGT 58.908 43.478 0.00 0.00 0.00 3.32
2252 7570 4.159135 TCCCTCTGTACCGAAATAGTTGTC 59.841 45.833 0.00 0.00 0.00 3.18
2253 7571 4.103357 CCTCTGTACCGAAATAGTTGTCG 58.897 47.826 0.00 0.00 37.01 4.35
2254 7572 4.380233 CCTCTGTACCGAAATAGTTGTCGT 60.380 45.833 0.00 0.00 35.48 4.34
2255 7573 5.125100 TCTGTACCGAAATAGTTGTCGTT 57.875 39.130 0.00 0.00 35.48 3.85
2256 7574 4.919168 TCTGTACCGAAATAGTTGTCGTTG 59.081 41.667 0.00 0.00 35.48 4.10
2257 7575 3.989167 TGTACCGAAATAGTTGTCGTTGG 59.011 43.478 0.00 0.00 35.48 3.77
2258 7576 3.389925 ACCGAAATAGTTGTCGTTGGA 57.610 42.857 0.00 0.00 35.48 3.53
2259 7577 3.731089 ACCGAAATAGTTGTCGTTGGAA 58.269 40.909 0.00 0.00 35.48 3.53
2260 7578 4.320870 ACCGAAATAGTTGTCGTTGGAAT 58.679 39.130 0.00 0.00 35.48 3.01
2261 7579 5.481105 ACCGAAATAGTTGTCGTTGGAATA 58.519 37.500 0.00 0.00 35.48 1.75
2262 7580 5.579511 ACCGAAATAGTTGTCGTTGGAATAG 59.420 40.000 0.00 0.00 35.48 1.73
2263 7581 5.490213 CGAAATAGTTGTCGTTGGAATAGC 58.510 41.667 0.00 0.00 32.61 2.97
2264 7582 5.291128 CGAAATAGTTGTCGTTGGAATAGCT 59.709 40.000 0.00 0.00 32.61 3.32
2265 7583 6.422776 AAATAGTTGTCGTTGGAATAGCTG 57.577 37.500 0.00 0.00 0.00 4.24
2266 7584 3.678056 AGTTGTCGTTGGAATAGCTGA 57.322 42.857 0.00 0.00 0.00 4.26
2267 7585 4.002906 AGTTGTCGTTGGAATAGCTGAA 57.997 40.909 0.00 0.00 0.00 3.02
2268 7586 3.997021 AGTTGTCGTTGGAATAGCTGAAG 59.003 43.478 0.00 0.00 0.00 3.02
2269 7587 3.678056 TGTCGTTGGAATAGCTGAAGT 57.322 42.857 0.00 0.00 0.00 3.01
2270 7588 4.002906 TGTCGTTGGAATAGCTGAAGTT 57.997 40.909 0.00 0.00 0.00 2.66
2271 7589 3.994392 TGTCGTTGGAATAGCTGAAGTTC 59.006 43.478 0.00 0.00 0.00 3.01
2272 7590 3.994392 GTCGTTGGAATAGCTGAAGTTCA 59.006 43.478 5.25 5.25 0.00 3.18
2273 7591 4.092091 GTCGTTGGAATAGCTGAAGTTCAG 59.908 45.833 25.68 25.68 46.90 3.02
2298 7616 2.883574 TCGAGCGACGATTATTTTGGT 58.116 42.857 0.00 0.00 46.45 3.67
2299 7617 4.031418 TCGAGCGACGATTATTTTGGTA 57.969 40.909 0.00 0.00 46.45 3.25
2300 7618 3.792956 TCGAGCGACGATTATTTTGGTAC 59.207 43.478 0.00 0.00 46.45 3.34
2301 7619 3.548668 CGAGCGACGATTATTTTGGTACA 59.451 43.478 0.00 0.00 45.77 2.90
2302 7620 4.317139 CGAGCGACGATTATTTTGGTACAG 60.317 45.833 0.00 0.00 45.77 2.74
2303 7621 4.751060 AGCGACGATTATTTTGGTACAGA 58.249 39.130 0.00 0.00 42.39 3.41
2304 7622 4.804139 AGCGACGATTATTTTGGTACAGAG 59.196 41.667 0.00 0.00 42.39 3.35
2305 7623 4.025979 GCGACGATTATTTTGGTACAGAGG 60.026 45.833 0.00 0.00 42.39 3.69
2306 7624 4.506654 CGACGATTATTTTGGTACAGAGGG 59.493 45.833 0.00 0.00 42.39 4.30
2307 7625 5.667466 GACGATTATTTTGGTACAGAGGGA 58.333 41.667 0.00 0.00 42.39 4.20
2308 7626 5.671493 ACGATTATTTTGGTACAGAGGGAG 58.329 41.667 0.00 0.00 42.39 4.30
2408 7743 6.478344 CCTATGCTTGATTCTACTTCACAGAC 59.522 42.308 0.00 0.00 0.00 3.51
2525 7862 1.068588 GGAACAAACAAACTGGCTCCC 59.931 52.381 0.00 0.00 0.00 4.30
2541 7878 1.942657 CTCCCATGAATAGGTTGTGCG 59.057 52.381 0.00 0.00 0.00 5.34
2546 7883 3.876914 CCATGAATAGGTTGTGCGTATGT 59.123 43.478 0.00 0.00 0.00 2.29
2550 7887 1.999048 TAGGTTGTGCGTATGTTCGG 58.001 50.000 0.00 0.00 0.00 4.30
2560 7897 2.333926 CGTATGTTCGGTTCTGCTTCA 58.666 47.619 0.00 0.00 0.00 3.02
2578 7915 6.454795 TGCTTCATTGGGTTCAAATAGAAAC 58.545 36.000 0.00 0.00 43.44 2.78
2593 7930 8.559536 TCAAATAGAAACTGATCTTTGACACAC 58.440 33.333 0.00 0.00 0.00 3.82
2859 8310 0.038166 ATGGACTGTGCAATTCCGGT 59.962 50.000 5.98 0.00 31.38 5.28
2999 8454 4.003648 GCACATAGGGCTATTGGTATGAC 58.996 47.826 0.00 0.00 0.00 3.06
3013 8469 6.735678 TTGGTATGACATCACACAACATAC 57.264 37.500 0.00 0.00 41.06 2.39
3109 8579 8.464770 TTTTTAATTCTTGACATACATGCAGC 57.535 30.769 0.00 0.00 0.00 5.25
3253 8723 2.686816 GCATGGGTGTGCGTGTACC 61.687 63.158 0.00 0.00 35.10 3.34
3288 8758 6.558488 ATGGATATCTAAAGATGGAGGAGC 57.442 41.667 2.05 0.00 36.05 4.70
3349 8819 8.697507 AGAAAGGATGAGTACAAAAGAAATGT 57.302 30.769 0.00 0.00 34.81 2.71
3414 8884 6.441924 AGGAGGAAGTTCAGACAAGAATATCA 59.558 38.462 5.01 0.00 0.00 2.15
3416 8886 8.424918 GGAGGAAGTTCAGACAAGAATATCATA 58.575 37.037 5.01 0.00 0.00 2.15
3578 9054 6.708885 TCATGAAGGAAATATGCCCTAGAT 57.291 37.500 0.00 0.00 31.36 1.98
3669 9147 6.673154 ATTAACCGGAAACTTAGTACATGC 57.327 37.500 9.46 0.00 0.00 4.06
3782 9261 6.751157 ACATGTGTTGTCATTTGATGAATGT 58.249 32.000 0.00 0.00 44.46 2.71
3883 9363 5.639506 TGCTACTGCTTTCTTCATGACTTAC 59.360 40.000 0.00 0.00 40.48 2.34
3885 9365 6.314896 GCTACTGCTTTCTTCATGACTTACAT 59.685 38.462 0.00 0.00 36.55 2.29
3896 9376 7.981789 TCTTCATGACTTACATATGTTCCTCAC 59.018 37.037 14.77 2.58 37.46 3.51
3924 9404 6.114187 TGAGATTATGCAACTCCCGAATAT 57.886 37.500 0.00 0.00 0.00 1.28
3965 9445 6.148645 TGTGCTATCAAACGTCACAACATAAT 59.851 34.615 1.90 0.00 35.08 1.28
3968 9448 7.021196 GCTATCAAACGTCACAACATAATTGT 58.979 34.615 0.00 0.00 37.82 2.71
4271 9762 2.229792 ACAATCGCCACTTCACACAAT 58.770 42.857 0.00 0.00 0.00 2.71
4352 9855 3.385193 AAAAGAAGAACCCCAAATGCG 57.615 42.857 0.00 0.00 0.00 4.73
4356 9860 1.611491 GAAGAACCCCAAATGCGACAA 59.389 47.619 0.00 0.00 0.00 3.18
4359 9863 0.678950 AACCCCAAATGCGACAAAGG 59.321 50.000 0.00 0.00 0.00 3.11
4404 9908 5.344884 GCTCCACTACTGATCAACTAGAAC 58.655 45.833 12.17 0.00 0.00 3.01
4420 9925 3.775661 AGAACGAAACAACACAAAGGG 57.224 42.857 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.034896 ACGTGAAAGCCAGGAATCGT 59.965 50.000 0.00 0.00 34.88 3.73
413 588 2.513897 GCTGGACCGTGGCATACC 60.514 66.667 0.00 0.00 0.00 2.73
644 842 6.021596 CGATAGCAATTGGTCAACACTAAAC 58.978 40.000 14.50 0.00 0.00 2.01
690 888 2.025727 CGGCGGTAGGCTAAGACG 59.974 66.667 11.29 11.29 42.94 4.18
788 997 4.796312 CGGACAAATTTCGTGTTTTGACTT 59.204 37.500 11.62 0.00 36.54 3.01
789 998 4.347813 CGGACAAATTTCGTGTTTTGACT 58.652 39.130 11.62 0.00 36.54 3.41
834 1043 9.456147 TTTTAGCCTGCTACTTTGATTATTGTA 57.544 29.630 0.00 0.00 0.00 2.41
835 1044 7.938140 TTTAGCCTGCTACTTTGATTATTGT 57.062 32.000 0.00 0.00 0.00 2.71
839 1048 5.357032 GCCTTTTAGCCTGCTACTTTGATTA 59.643 40.000 0.00 0.00 0.00 1.75
885 1094 1.769733 CATGGTCAAAGTTTGTGGCG 58.230 50.000 15.08 0.00 0.00 5.69
902 1111 1.079073 CCAAGTTTCCCCCTGGCAT 59.921 57.895 0.00 0.00 0.00 4.40
911 1120 2.909965 TGTGGCGCCCAAGTTTCC 60.910 61.111 26.77 1.72 34.18 3.13
992 1232 1.134098 CCGTGGGCTCCATATTTCAGT 60.134 52.381 0.00 0.00 35.28 3.41
999 1239 2.363975 GGTGACCGTGGGCTCCATA 61.364 63.158 7.98 0.00 35.28 2.74
1236 1479 3.889044 TCGCAGCCGTCGGAGATC 61.889 66.667 17.49 0.00 40.67 2.75
1668 3004 1.795768 GGAATGAGTTGACGAGCACA 58.204 50.000 0.00 0.00 0.00 4.57
1806 3148 6.747280 GTGTGCAGTTTATAATTGTGGATGAC 59.253 38.462 0.00 0.00 0.00 3.06
1844 6942 1.893759 CACGCGCTGCAATCATAAAA 58.106 45.000 5.73 0.00 0.00 1.52
1914 7113 8.950007 ACCAACATAGGAAAAATTCTAAGGAA 57.050 30.769 0.00 0.00 35.78 3.36
1933 7135 8.583296 TCAATCATATGAATCAAACAACCAACA 58.417 29.630 9.99 0.00 0.00 3.33
1991 7288 7.808856 GCTAGAAATTCTATGGGAAGTAGTACG 59.191 40.741 2.87 0.00 37.36 3.67
2134 7452 4.037446 TGATTCGCAGGGTTATAAAATGCC 59.963 41.667 10.53 0.00 33.32 4.40
2137 7455 7.033185 GTGTTTGATTCGCAGGGTTATAAAAT 58.967 34.615 0.00 0.00 0.00 1.82
2143 7461 2.852449 TGTGTTTGATTCGCAGGGTTA 58.148 42.857 0.00 0.00 0.00 2.85
2146 7464 4.574421 TGTATATGTGTTTGATTCGCAGGG 59.426 41.667 0.00 0.00 0.00 4.45
2151 7469 9.605955 TCTTGTTTTGTATATGTGTTTGATTCG 57.394 29.630 0.00 0.00 0.00 3.34
2208 7526 5.454329 GGGAGTAGAAAACTACAGTGGTGTT 60.454 44.000 9.51 0.00 41.38 3.32
2215 7533 5.986501 ACAGAGGGAGTAGAAAACTACAG 57.013 43.478 9.51 0.00 41.38 2.74
2226 7544 5.121380 ACTATTTCGGTACAGAGGGAGTA 57.879 43.478 0.00 0.00 0.00 2.59
2227 7545 3.978610 ACTATTTCGGTACAGAGGGAGT 58.021 45.455 0.00 0.00 0.00 3.85
2228 7546 4.159879 ACAACTATTTCGGTACAGAGGGAG 59.840 45.833 0.00 0.00 0.00 4.30
2229 7547 4.091549 ACAACTATTTCGGTACAGAGGGA 58.908 43.478 0.00 0.00 0.00 4.20
2230 7548 4.430908 GACAACTATTTCGGTACAGAGGG 58.569 47.826 0.00 0.00 0.00 4.30
2231 7549 4.103357 CGACAACTATTTCGGTACAGAGG 58.897 47.826 0.00 0.00 0.00 3.69
2232 7550 4.730657 ACGACAACTATTTCGGTACAGAG 58.269 43.478 0.00 0.00 39.63 3.35
2233 7551 4.771590 ACGACAACTATTTCGGTACAGA 57.228 40.909 0.00 0.00 39.63 3.41
2234 7552 4.090930 CCAACGACAACTATTTCGGTACAG 59.909 45.833 0.00 0.00 39.63 2.74
2235 7553 3.989167 CCAACGACAACTATTTCGGTACA 59.011 43.478 0.00 0.00 39.63 2.90
2236 7554 4.236935 TCCAACGACAACTATTTCGGTAC 58.763 43.478 0.00 0.00 39.63 3.34
2237 7555 4.517952 TCCAACGACAACTATTTCGGTA 57.482 40.909 0.00 0.00 39.63 4.02
2238 7556 3.389925 TCCAACGACAACTATTTCGGT 57.610 42.857 0.00 0.00 39.63 4.69
2239 7557 4.939509 ATTCCAACGACAACTATTTCGG 57.060 40.909 0.00 0.00 39.63 4.30
2240 7558 5.291128 AGCTATTCCAACGACAACTATTTCG 59.709 40.000 0.00 0.00 41.14 3.46
2241 7559 6.312918 TCAGCTATTCCAACGACAACTATTTC 59.687 38.462 0.00 0.00 0.00 2.17
2242 7560 6.170506 TCAGCTATTCCAACGACAACTATTT 58.829 36.000 0.00 0.00 0.00 1.40
2243 7561 5.730550 TCAGCTATTCCAACGACAACTATT 58.269 37.500 0.00 0.00 0.00 1.73
2244 7562 5.339008 TCAGCTATTCCAACGACAACTAT 57.661 39.130 0.00 0.00 0.00 2.12
2245 7563 4.794278 TCAGCTATTCCAACGACAACTA 57.206 40.909 0.00 0.00 0.00 2.24
2246 7564 3.678056 TCAGCTATTCCAACGACAACT 57.322 42.857 0.00 0.00 0.00 3.16
2247 7565 3.746492 ACTTCAGCTATTCCAACGACAAC 59.254 43.478 0.00 0.00 0.00 3.32
2248 7566 4.002906 ACTTCAGCTATTCCAACGACAA 57.997 40.909 0.00 0.00 0.00 3.18
2249 7567 3.678056 ACTTCAGCTATTCCAACGACA 57.322 42.857 0.00 0.00 0.00 4.35
2250 7568 3.994392 TGAACTTCAGCTATTCCAACGAC 59.006 43.478 0.00 0.00 0.00 4.34
2251 7569 4.245660 CTGAACTTCAGCTATTCCAACGA 58.754 43.478 5.84 0.00 37.72 3.85
2252 7570 4.590400 CTGAACTTCAGCTATTCCAACG 57.410 45.455 5.84 0.00 37.72 4.10
2279 7597 3.548668 TGTACCAAAATAATCGTCGCTCG 59.451 43.478 0.00 0.00 41.41 5.03
2280 7598 4.802039 TCTGTACCAAAATAATCGTCGCTC 59.198 41.667 0.00 0.00 0.00 5.03
2281 7599 4.751060 TCTGTACCAAAATAATCGTCGCT 58.249 39.130 0.00 0.00 0.00 4.93
2282 7600 4.025979 CCTCTGTACCAAAATAATCGTCGC 60.026 45.833 0.00 0.00 0.00 5.19
2283 7601 4.506654 CCCTCTGTACCAAAATAATCGTCG 59.493 45.833 0.00 0.00 0.00 5.12
2284 7602 5.667466 TCCCTCTGTACCAAAATAATCGTC 58.333 41.667 0.00 0.00 0.00 4.20
2285 7603 5.189145 ACTCCCTCTGTACCAAAATAATCGT 59.811 40.000 0.00 0.00 0.00 3.73
2286 7604 5.671493 ACTCCCTCTGTACCAAAATAATCG 58.329 41.667 0.00 0.00 0.00 3.34
2287 7605 6.700520 CGTACTCCCTCTGTACCAAAATAATC 59.299 42.308 0.00 0.00 37.55 1.75
2288 7606 6.381994 TCGTACTCCCTCTGTACCAAAATAAT 59.618 38.462 0.00 0.00 37.55 1.28
2289 7607 5.716228 TCGTACTCCCTCTGTACCAAAATAA 59.284 40.000 0.00 0.00 37.55 1.40
2290 7608 5.263599 TCGTACTCCCTCTGTACCAAAATA 58.736 41.667 0.00 0.00 37.55 1.40
2291 7609 4.091549 TCGTACTCCCTCTGTACCAAAAT 58.908 43.478 0.00 0.00 37.55 1.82
2292 7610 3.499338 TCGTACTCCCTCTGTACCAAAA 58.501 45.455 0.00 0.00 37.55 2.44
2293 7611 3.087031 CTCGTACTCCCTCTGTACCAAA 58.913 50.000 0.00 0.00 37.55 3.28
2294 7612 2.040813 ACTCGTACTCCCTCTGTACCAA 59.959 50.000 0.00 0.00 37.55 3.67
2295 7613 1.632409 ACTCGTACTCCCTCTGTACCA 59.368 52.381 0.00 0.00 37.55 3.25
2296 7614 2.416680 ACTCGTACTCCCTCTGTACC 57.583 55.000 0.00 0.00 37.55 3.34
2297 7615 7.742556 ATATAAACTCGTACTCCCTCTGTAC 57.257 40.000 0.00 0.00 37.50 2.90
2298 7616 8.757982 AAATATAAACTCGTACTCCCTCTGTA 57.242 34.615 0.00 0.00 0.00 2.74
2299 7617 7.657023 AAATATAAACTCGTACTCCCTCTGT 57.343 36.000 0.00 0.00 0.00 3.41
2347 7665 5.048083 TCTCAAACCTCATTTGGTGTTATGC 60.048 40.000 0.00 0.00 46.65 3.14
2408 7743 5.276461 TCACTAGGGTAACATATGCACAG 57.724 43.478 1.58 0.00 39.74 3.66
2449 7784 0.598562 GGACTCGACTCAGCTCACAA 59.401 55.000 0.00 0.00 0.00 3.33
2459 7794 4.744795 AAAGAAGCATATGGACTCGACT 57.255 40.909 4.56 0.00 0.00 4.18
2519 7856 2.301346 CACAACCTATTCATGGGAGCC 58.699 52.381 0.00 0.00 32.04 4.70
2525 7862 5.484173 AACATACGCACAACCTATTCATG 57.516 39.130 0.00 0.00 0.00 3.07
2541 7878 4.437390 CCAATGAAGCAGAACCGAACATAC 60.437 45.833 0.00 0.00 0.00 2.39
2546 7883 1.202879 ACCCAATGAAGCAGAACCGAA 60.203 47.619 0.00 0.00 0.00 4.30
2550 7887 4.320608 TTTGAACCCAATGAAGCAGAAC 57.679 40.909 0.00 0.00 31.46 3.01
2560 7897 8.655935 AAGATCAGTTTCTATTTGAACCCAAT 57.344 30.769 0.00 0.00 33.88 3.16
2593 7930 2.486472 ACCTCCTGCTCAAATGACAG 57.514 50.000 6.21 6.21 0.00 3.51
2859 8310 6.066032 CCTTACAACCCAGAGAAAAGGTTTA 58.934 40.000 0.00 0.00 41.97 2.01
2999 8454 9.121517 GAATGAAAAGAAGTATGTTGTGTGATG 57.878 33.333 0.00 0.00 0.00 3.07
3094 8563 2.925578 GCAAGCTGCATGTATGTCAA 57.074 45.000 6.74 0.00 44.26 3.18
3109 8579 2.034558 CCACAGTGGGTAACAAAGCAAG 59.965 50.000 12.40 0.00 39.74 4.01
3253 8723 9.929180 TCTTTAGATATCCATTATTGTCCTTCG 57.071 33.333 0.00 0.00 0.00 3.79
3288 8758 3.450457 ACCTCTCTAATGCACCTCTCAAG 59.550 47.826 0.00 0.00 0.00 3.02
3349 8819 2.224018 GCCTTTTGCATCCACTTCACAA 60.224 45.455 0.00 0.00 40.77 3.33
3414 8884 8.367911 TGATGAATACTTGGTAGCGAATTCTAT 58.632 33.333 3.52 0.00 0.00 1.98
3416 8886 6.582636 TGATGAATACTTGGTAGCGAATTCT 58.417 36.000 3.52 0.00 0.00 2.40
3669 9147 8.869897 ACACTATGTTTTGTCTATGTATTCACG 58.130 33.333 0.00 0.00 0.00 4.35
3780 9259 7.128234 TCATTCTCCTAATGATGTGATCACA 57.872 36.000 29.67 29.67 43.01 3.58
3896 9376 4.687948 CGGGAGTTGCATAATCTCATAGTG 59.312 45.833 0.00 0.00 0.00 2.74
3924 9404 0.105964 CACACAAGGTGTTCCTCCGA 59.894 55.000 0.00 0.00 45.08 4.55
4075 9555 8.029522 GCTTATAGTGATGATCATTACCGAGAA 58.970 37.037 22.99 15.11 0.00 2.87
4359 9863 3.078836 TTGGGGTCGATCGGGGAC 61.079 66.667 16.41 6.05 0.00 4.46
4404 9908 2.159310 TCTTGCCCTTTGTGTTGTTTCG 60.159 45.455 0.00 0.00 0.00 3.46
4420 9925 2.134346 GGAGCTCGATGAAGATCTTGC 58.866 52.381 14.00 8.89 32.29 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.