Multiple sequence alignment - TraesCS5B01G148100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G148100 chr5B 100.000 5042 0 0 1 5042 276656133 276661174 0.000000e+00 9311.0
1 TraesCS5B01G148100 chr5D 95.545 5051 182 23 1 5042 229190665 229185649 0.000000e+00 8041.0
2 TraesCS5B01G148100 chr5A 94.774 2430 99 17 1765 4178 327433406 327435823 0.000000e+00 3759.0
3 TraesCS5B01G148100 chr5A 92.506 1788 111 9 1 1767 327431461 327433246 0.000000e+00 2538.0
4 TraesCS5B01G148100 chr5A 97.083 857 23 2 4186 5042 327436000 327436854 0.000000e+00 1443.0
5 TraesCS5B01G148100 chr4A 78.119 553 91 24 2430 2966 454603865 454603327 1.750000e-84 324.0
6 TraesCS5B01G148100 chr4B 73.230 904 191 39 2446 3329 181437659 181436787 1.070000e-71 281.0
7 TraesCS5B01G148100 chr4D 83.190 232 39 0 1389 1620 119235279 119235048 3.950000e-51 213.0
8 TraesCS5B01G148100 chr7D 85.455 55 7 1 92 145 18623287 18623341 7.050000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G148100 chr5B 276656133 276661174 5041 False 9311 9311 100.000000 1 5042 1 chr5B.!!$F1 5041
1 TraesCS5B01G148100 chr5D 229185649 229190665 5016 True 8041 8041 95.545000 1 5042 1 chr5D.!!$R1 5041
2 TraesCS5B01G148100 chr5A 327431461 327436854 5393 False 2580 3759 94.787667 1 5042 3 chr5A.!!$F1 5041
3 TraesCS5B01G148100 chr4A 454603327 454603865 538 True 324 324 78.119000 2430 2966 1 chr4A.!!$R1 536
4 TraesCS5B01G148100 chr4B 181436787 181437659 872 True 281 281 73.230000 2446 3329 1 chr4B.!!$R1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 572 1.135083 CGGTTGATGCTCGGAAGTACT 60.135 52.381 0.00 0.0 0.00 2.73 F
1650 1675 0.249955 CAACCAATGCAACCATCCCC 59.750 55.000 0.00 0.0 0.00 4.81 F
3550 3809 0.606401 ACAGCGCAACCTAATGCAGT 60.606 50.000 11.47 0.0 46.76 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2056 1.033746 TAGGCAGCAGCAGAAATGGC 61.034 55.000 2.65 0.00 44.61 4.40 R
3571 3830 0.689055 TGCTGCATTCCTCAGTGACT 59.311 50.000 0.00 0.00 34.21 3.41 R
4421 4889 1.070445 GAGCAGTGATGGCGCCTAT 59.930 57.895 29.70 19.23 36.08 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 4.489771 CTGGTCGATGGGCCACCC 62.490 72.222 9.28 7.45 45.71 4.61
70 72 3.623703 GCCACCCCTTGTGTATTGTATCA 60.624 47.826 0.00 0.00 43.85 2.15
76 78 5.397899 CCCCTTGTGTATTGTATCATCACCT 60.398 44.000 0.00 0.00 0.00 4.00
80 82 5.917462 TGTGTATTGTATCATCACCTGAGG 58.083 41.667 0.00 0.00 37.28 3.86
112 114 1.734465 GATGTTCACTTCCTTGGAGCG 59.266 52.381 0.00 0.00 0.00 5.03
148 150 2.291735 TGGAGGGATGGACGTTACTACA 60.292 50.000 0.00 0.00 0.00 2.74
222 225 6.498538 TCACAAACTATTGGGGGTAAATCAT 58.501 36.000 0.00 0.00 40.52 2.45
235 238 7.017750 TGGGGGTAAATCATAAATCGATTCCTA 59.982 37.037 11.83 1.25 31.90 2.94
250 253 6.761312 TCGATTCCTAACCAAAACTTCTACA 58.239 36.000 0.00 0.00 0.00 2.74
263 266 4.325084 ACTTCTACAGCCTAGGAGTCTT 57.675 45.455 14.75 0.00 27.28 3.01
264 267 4.679331 ACTTCTACAGCCTAGGAGTCTTT 58.321 43.478 14.75 0.00 27.28 2.52
303 306 4.422073 AGATCGAATGGGAGCACATTTA 57.578 40.909 0.00 0.00 40.92 1.40
421 424 2.102757 TCACCGCTTACAGTTACAACCA 59.897 45.455 0.00 0.00 0.00 3.67
425 428 2.742053 CGCTTACAGTTACAACCATGCT 59.258 45.455 0.00 0.00 0.00 3.79
502 505 9.618890 CTTGATATCCTACCAAAGAAAGAATCA 57.381 33.333 0.00 0.00 0.00 2.57
504 507 9.396022 TGATATCCTACCAAAGAAAGAATCAAC 57.604 33.333 0.00 0.00 0.00 3.18
512 515 1.702957 AGAAAGAATCAACGTCCCCCA 59.297 47.619 0.00 0.00 0.00 4.96
568 572 1.135083 CGGTTGATGCTCGGAAGTACT 60.135 52.381 0.00 0.00 0.00 2.73
573 577 3.089284 TGATGCTCGGAAGTACTTCTCA 58.911 45.455 29.66 22.06 39.45 3.27
582 586 4.081642 CGGAAGTACTTCTCAAATGGAGGA 60.082 45.833 29.66 0.00 44.19 3.71
597 601 2.834549 TGGAGGAGGTAGCTTCTTCAAG 59.165 50.000 8.90 0.00 0.00 3.02
619 623 7.451255 TCAAGAACCACATCATTCCTATGTTTT 59.549 33.333 0.00 0.00 35.39 2.43
624 628 6.493115 ACCACATCATTCCTATGTTTTCACAA 59.507 34.615 0.00 0.00 35.39 3.33
628 632 7.667219 ACATCATTCCTATGTTTTCACAACTCT 59.333 33.333 0.00 0.00 36.16 3.24
650 654 3.073678 CAAAGACCCAACGTGATGATGA 58.926 45.455 0.00 0.00 0.00 2.92
664 668 5.233902 CGTGATGATGAACTTGAGATCCTTC 59.766 44.000 0.00 0.00 0.00 3.46
717 725 1.974957 TCCGAGAATGGGAACACTTGA 59.025 47.619 0.00 0.00 41.32 3.02
749 757 7.059945 GCTCAAATCATGAAAAACGTAAGTCAG 59.940 37.037 0.00 0.00 45.04 3.51
1273 1297 4.499183 ACTTGCTGCTACTACATGTCTTC 58.501 43.478 0.00 0.00 0.00 2.87
1288 1312 7.897575 ACATGTCTTCTCAGAACTTGTTATC 57.102 36.000 0.00 0.00 0.00 1.75
1334 1359 6.925165 CCCGAGATAAAATCCCAAATTTCATG 59.075 38.462 0.00 0.00 0.00 3.07
1395 1420 1.118356 TTGATTTTGGCGCAGGGGTT 61.118 50.000 10.83 0.00 0.00 4.11
1513 1538 3.618351 CATGAGCCAATCTTCAAGTCCT 58.382 45.455 0.00 0.00 0.00 3.85
1514 1539 3.340814 TGAGCCAATCTTCAAGTCCTC 57.659 47.619 0.00 0.00 0.00 3.71
1518 1543 2.622436 CCAATCTTCAAGTCCTCCGTC 58.378 52.381 0.00 0.00 0.00 4.79
1524 1549 2.118313 TCAAGTCCTCCGTCGTGATA 57.882 50.000 0.00 0.00 0.00 2.15
1531 1556 2.296752 TCCTCCGTCGTGATAAACAACA 59.703 45.455 0.00 0.00 0.00 3.33
1532 1557 2.410730 CCTCCGTCGTGATAAACAACAC 59.589 50.000 0.00 0.00 0.00 3.32
1539 1564 5.119588 CGTCGTGATAAACAACACCAAGTAT 59.880 40.000 0.00 0.00 34.05 2.12
1545 1570 7.387948 GTGATAAACAACACCAAGTATGACTCT 59.612 37.037 0.00 0.00 0.00 3.24
1546 1571 7.936847 TGATAAACAACACCAAGTATGACTCTT 59.063 33.333 0.00 0.00 0.00 2.85
1551 1576 3.073062 ACACCAAGTATGACTCTTTGCCT 59.927 43.478 0.00 0.00 0.00 4.75
1625 1650 1.523758 GAAATCGGCAAGTCTGTGGT 58.476 50.000 0.00 0.00 0.00 4.16
1650 1675 0.249955 CAACCAATGCAACCATCCCC 59.750 55.000 0.00 0.00 0.00 4.81
1674 1699 4.670621 GCAGTCGTAAGTTGTTGATTGTTG 59.329 41.667 0.00 0.00 39.48 3.33
1710 1735 4.081406 TCTGGCTGTGCTTATGTGAAATT 58.919 39.130 0.00 0.00 0.00 1.82
1755 1780 9.952188 GGTAGCATATGGTTAGAAAGAATTTTC 57.048 33.333 13.49 0.00 39.27 2.29
1869 2056 7.751732 TCTTCAATCATGTAGTGGAAAAATCG 58.248 34.615 0.00 0.00 0.00 3.34
1876 2063 5.054390 TGTAGTGGAAAAATCGCCATTTC 57.946 39.130 0.00 0.00 36.41 2.17
2082 2269 8.956426 TCGGAAAGCTCTTGTTTATTTCATTAT 58.044 29.630 0.00 0.00 32.73 1.28
2266 2453 1.434555 TGAACAACGCAATAGGGACG 58.565 50.000 0.00 0.00 0.00 4.79
2271 2458 2.073816 CAACGCAATAGGGACGTTTCT 58.926 47.619 0.00 0.00 46.96 2.52
2359 2546 7.136822 ACCATGCTTTATAGGATTGAGTGTA 57.863 36.000 0.00 0.00 28.79 2.90
2709 2908 3.799137 TCACTTTCGAAATTGTACCGC 57.201 42.857 22.74 0.00 0.00 5.68
3036 3235 4.391216 CAGCTGTAACAACAGAAGATCCAG 59.609 45.833 5.25 0.00 39.99 3.86
3059 3258 4.393062 GTGACCAACACTGTAATGATCCAG 59.607 45.833 0.00 0.00 45.13 3.86
3092 3291 1.173043 GGCCATTCGAACATGAACCA 58.827 50.000 0.00 0.00 0.00 3.67
3298 3497 1.019278 AACGCTCCAATGGTGCTACG 61.019 55.000 21.88 10.68 39.70 3.51
3363 3562 0.754587 TGCAATGCCACAACCTCACA 60.755 50.000 1.53 0.00 0.00 3.58
3438 3697 5.557576 ACCTAATGATGAAGCTAGATGCA 57.442 39.130 0.00 0.00 45.94 3.96
3550 3809 0.606401 ACAGCGCAACCTAATGCAGT 60.606 50.000 11.47 0.00 46.76 4.40
3570 3829 8.437360 TGCAGTGACTACAAATATAAATGAGG 57.563 34.615 0.00 0.00 0.00 3.86
3571 3830 8.264347 TGCAGTGACTACAAATATAAATGAGGA 58.736 33.333 0.00 0.00 0.00 3.71
3572 3831 8.768955 GCAGTGACTACAAATATAAATGAGGAG 58.231 37.037 0.00 0.00 0.00 3.69
3653 3912 0.035317 CACCCAGCAGTGCTTCACTA 59.965 55.000 16.89 0.00 43.43 2.74
3655 3914 0.035317 CCCAGCAGTGCTTCACTACA 59.965 55.000 16.89 0.00 43.43 2.74
3938 4199 0.609957 AGATGGACGTACGTGGACCA 60.610 55.000 28.16 25.87 35.09 4.02
4006 4294 8.304596 GGAAATTTGCATGATGATGTATCTCAT 58.695 33.333 4.63 0.00 38.57 2.90
4097 4396 7.753132 CGGTGTTTGTTATTAGCACATGTTATT 59.247 33.333 0.00 0.00 0.00 1.40
4255 4723 1.571460 GTCTTGCTGCAACGGACAG 59.429 57.895 22.41 9.50 38.22 3.51
4359 4827 0.617935 TTGATTCTCGGCCATCACCA 59.382 50.000 2.24 0.00 0.00 4.17
4556 5024 3.099141 CCATGGTTGGAAAGGCATTACT 58.901 45.455 2.57 0.00 46.92 2.24
4871 5339 6.459670 TCGGCACTTACTGATGAAATAGTA 57.540 37.500 0.00 0.00 0.00 1.82
4892 5360 1.072159 AAAAGCACTCTCCGCAGCT 59.928 52.632 0.00 0.00 39.37 4.24
4913 5381 1.737236 GATATGTCACCGCACTTTGCA 59.263 47.619 0.00 0.00 45.36 4.08
5005 5473 3.621225 TCTGGACTGCCGGATCAG 58.379 61.111 5.05 6.58 44.72 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 6.348498 TCAGGTGATGATACAATACACAAGG 58.652 40.000 0.00 0.00 31.12 3.61
70 72 1.137872 GACATCTTCGCCTCAGGTGAT 59.862 52.381 8.09 0.00 42.13 3.06
76 78 0.103026 CATCGGACATCTTCGCCTCA 59.897 55.000 0.00 0.00 0.00 3.86
80 82 1.324736 GTGAACATCGGACATCTTCGC 59.675 52.381 0.00 0.00 0.00 4.70
112 114 2.194271 CCTCCAACGACGATTAGCTTC 58.806 52.381 0.00 0.00 0.00 3.86
148 150 4.082245 CACTAATGGTTGGAAATCGCCTTT 60.082 41.667 0.00 0.00 0.00 3.11
222 225 8.857694 AGAAGTTTTGGTTAGGAATCGATTTA 57.142 30.769 12.81 0.00 0.00 1.40
235 238 4.349930 TCCTAGGCTGTAGAAGTTTTGGTT 59.650 41.667 2.96 0.00 0.00 3.67
250 253 4.426704 TGAAGGTTAAAGACTCCTAGGCT 58.573 43.478 2.96 0.00 32.54 4.58
263 266 8.665643 TCGATCTTGTTACTTTTGAAGGTTAA 57.334 30.769 0.00 0.00 0.00 2.01
264 267 8.665643 TTCGATCTTGTTACTTTTGAAGGTTA 57.334 30.769 0.00 0.00 0.00 2.85
375 378 6.808212 AGATGTAATTTTCAAACGATGCAAGG 59.192 34.615 0.00 0.00 0.00 3.61
425 428 3.619900 ATCTAGGTGGAGACTGCCATA 57.380 47.619 0.00 0.00 40.68 2.74
502 505 1.299976 GCTTCTCATGGGGGACGTT 59.700 57.895 0.00 0.00 0.00 3.99
504 507 2.190578 GGCTTCTCATGGGGGACG 59.809 66.667 0.00 0.00 0.00 4.79
512 515 1.557269 AAGACGGCTGGGCTTCTCAT 61.557 55.000 0.00 0.00 0.00 2.90
568 572 3.454858 AGCTACCTCCTCCATTTGAGAA 58.545 45.455 0.00 0.00 44.42 2.87
573 577 3.846588 TGAAGAAGCTACCTCCTCCATTT 59.153 43.478 0.00 0.00 0.00 2.32
597 601 7.029563 GTGAAAACATAGGAATGATGTGGTTC 58.970 38.462 0.00 0.00 37.59 3.62
619 623 3.541632 GTTGGGTCTTTGAGAGTTGTGA 58.458 45.455 0.00 0.00 0.00 3.58
624 628 1.760613 TCACGTTGGGTCTTTGAGAGT 59.239 47.619 0.00 0.00 0.00 3.24
628 632 2.920724 TCATCACGTTGGGTCTTTGA 57.079 45.000 0.00 0.00 0.00 2.69
717 725 6.534793 ACGTTTTTCATGATTTGAGCAAGTTT 59.465 30.769 0.00 0.00 35.27 2.66
749 757 2.910688 TCCGCACATCCTCTTTATCC 57.089 50.000 0.00 0.00 0.00 2.59
752 760 2.115427 TGGATCCGCACATCCTCTTTA 58.885 47.619 7.39 0.00 42.79 1.85
754 762 1.135094 ATGGATCCGCACATCCTCTT 58.865 50.000 7.39 0.00 42.79 2.85
1273 1297 4.437239 AGCATCCGATAACAAGTTCTGAG 58.563 43.478 0.00 0.00 0.00 3.35
1288 1312 3.265791 GGGAAATCTATGCTAGCATCCG 58.734 50.000 32.76 23.58 37.82 4.18
1334 1359 2.318578 CACATCGTTGCAATGTTGGAC 58.681 47.619 25.87 3.83 35.19 4.02
1395 1420 5.134202 TCTTGAAGACGTAGCAATTCTCA 57.866 39.130 0.00 0.00 0.00 3.27
1461 1486 2.907042 CTCCTTGAGGGTTTGGTACTCT 59.093 50.000 0.00 0.00 41.50 3.24
1513 1538 2.223994 TGGTGTTGTTTATCACGACGGA 60.224 45.455 0.00 0.00 42.31 4.69
1514 1539 2.136728 TGGTGTTGTTTATCACGACGG 58.863 47.619 0.00 0.00 42.31 4.79
1518 1543 6.147164 AGTCATACTTGGTGTTGTTTATCACG 59.853 38.462 0.00 0.00 35.67 4.35
1524 1549 6.680378 GCAAAGAGTCATACTTGGTGTTGTTT 60.680 38.462 0.00 0.00 0.00 2.83
1531 1556 3.560025 CCAGGCAAAGAGTCATACTTGGT 60.560 47.826 0.00 0.00 0.00 3.67
1532 1557 3.012518 CCAGGCAAAGAGTCATACTTGG 58.987 50.000 0.00 0.00 0.00 3.61
1539 1564 1.140312 AGAACCCAGGCAAAGAGTCA 58.860 50.000 0.00 0.00 0.00 3.41
1545 1570 2.732289 GCTGAAGAACCCAGGCAAA 58.268 52.632 0.00 0.00 32.51 3.68
1546 1571 4.500265 GCTGAAGAACCCAGGCAA 57.500 55.556 0.00 0.00 32.51 4.52
1551 1576 3.569849 TTCCGGCTGAAGAACCCA 58.430 55.556 0.00 0.00 0.00 4.51
1587 1612 4.435436 ATGAGCGCGACTTCGGCA 62.435 61.111 12.10 1.02 40.23 5.69
1596 1621 2.628106 CCGATTTCCATGAGCGCG 59.372 61.111 0.00 0.00 0.00 6.86
1650 1675 3.059868 ACAATCAACAACTTACGACTGCG 60.060 43.478 0.00 0.00 44.79 5.18
1674 1699 3.879892 ACAGCCAGACTTGAGAAAGAAAC 59.120 43.478 0.00 0.00 0.00 2.78
1710 1735 7.398829 TGCTACCCACAATATTCTTTCTAACA 58.601 34.615 0.00 0.00 0.00 2.41
1755 1780 7.697291 CCTCTTACTAGCTTCTACGTTAAACAG 59.303 40.741 0.00 0.00 0.00 3.16
1869 2056 1.033746 TAGGCAGCAGCAGAAATGGC 61.034 55.000 2.65 0.00 44.61 4.40
2266 2453 5.917447 GCATTTTTCTCTCAAGGACAGAAAC 59.083 40.000 0.00 0.00 0.00 2.78
2271 2458 5.415701 GGTATGCATTTTTCTCTCAAGGACA 59.584 40.000 3.54 0.00 0.00 4.02
2359 2546 5.892119 TCAGTCATCCTCCTACGAATTAAGT 59.108 40.000 0.00 0.00 0.00 2.24
2398 2585 3.256879 CACAGCAGGAAAGAGACTAGACA 59.743 47.826 0.00 0.00 0.00 3.41
2709 2908 4.164988 ACCTCAATACCCAAAGGATGAGAG 59.835 45.833 12.55 0.00 40.84 3.20
3036 3235 4.323417 TGGATCATTACAGTGTTGGTCAC 58.677 43.478 0.00 0.00 46.46 3.67
3056 3255 1.664321 GCCAAGCTTCATCAGGCTGG 61.664 60.000 15.73 4.40 42.01 4.85
3059 3258 1.041447 ATGGCCAAGCTTCATCAGGC 61.041 55.000 10.96 14.76 44.48 4.85
3092 3291 1.795170 GCATTGCAGTGTCACCGGTT 61.795 55.000 2.97 0.00 0.00 4.44
3120 3319 1.098050 GATGGCCAAGCGTCTTCAAT 58.902 50.000 10.96 0.00 0.00 2.57
3121 3320 0.960364 GGATGGCCAAGCGTCTTCAA 60.960 55.000 10.96 0.00 0.00 2.69
3298 3497 8.338986 GCTTTACATTTCTAGCTTCCTCATTAC 58.661 37.037 0.00 0.00 0.00 1.89
3339 3538 1.364901 GTTGTGGCATTGCAGTGCT 59.635 52.632 29.95 0.00 44.45 4.40
3353 3552 5.485353 TCTTCTATCTTCCATGTGAGGTTGT 59.515 40.000 0.00 0.00 0.00 3.32
3363 3562 3.645687 GCTCCCACTCTTCTATCTTCCAT 59.354 47.826 0.00 0.00 0.00 3.41
3550 3809 9.817809 GTGACTCCTCATTTATATTTGTAGTCA 57.182 33.333 0.00 0.00 37.78 3.41
3570 3829 1.338484 TGCTGCATTCCTCAGTGACTC 60.338 52.381 0.00 0.00 34.21 3.36
3571 3830 0.689055 TGCTGCATTCCTCAGTGACT 59.311 50.000 0.00 0.00 34.21 3.41
3572 3831 1.669779 GATGCTGCATTCCTCAGTGAC 59.330 52.381 17.36 0.00 34.21 3.67
3653 3912 1.531602 GGGTTCCTTTGGCTGCTGT 60.532 57.895 0.00 0.00 0.00 4.40
3655 3914 1.228675 CTGGGTTCCTTTGGCTGCT 60.229 57.895 0.00 0.00 0.00 4.24
3942 4203 2.073716 TGGACCACCAACCGACCTT 61.074 57.895 0.00 0.00 43.91 3.50
4006 4294 8.969260 ATAGTTCATTGATCAGATAAGCAACA 57.031 30.769 0.00 0.00 0.00 3.33
4055 4354 9.804758 AACAAACACCGACTATTAATTCAAAAA 57.195 25.926 0.00 0.00 0.00 1.94
4062 4361 9.386010 TGCTAATAACAAACACCGACTATTAAT 57.614 29.630 0.00 0.00 0.00 1.40
4063 4362 8.658609 GTGCTAATAACAAACACCGACTATTAA 58.341 33.333 0.00 0.00 0.00 1.40
4064 4363 7.818446 TGTGCTAATAACAAACACCGACTATTA 59.182 33.333 0.00 0.00 0.00 0.98
4065 4364 6.651643 TGTGCTAATAACAAACACCGACTATT 59.348 34.615 0.00 0.00 0.00 1.73
4066 4365 6.167685 TGTGCTAATAACAAACACCGACTAT 58.832 36.000 0.00 0.00 0.00 2.12
4067 4366 5.539979 TGTGCTAATAACAAACACCGACTA 58.460 37.500 0.00 0.00 0.00 2.59
4068 4367 4.382291 TGTGCTAATAACAAACACCGACT 58.618 39.130 0.00 0.00 0.00 4.18
4069 4368 4.735662 TGTGCTAATAACAAACACCGAC 57.264 40.909 0.00 0.00 0.00 4.79
4070 4369 4.757657 ACATGTGCTAATAACAAACACCGA 59.242 37.500 0.00 0.00 0.00 4.69
4071 4370 5.041951 ACATGTGCTAATAACAAACACCG 57.958 39.130 0.00 0.00 0.00 4.94
4072 4371 8.980143 AATAACATGTGCTAATAACAAACACC 57.020 30.769 0.00 0.00 0.00 4.16
4073 4372 9.072294 GGAATAACATGTGCTAATAACAAACAC 57.928 33.333 0.00 0.00 0.00 3.32
4074 4373 9.019656 AGGAATAACATGTGCTAATAACAAACA 57.980 29.630 0.00 0.00 0.00 2.83
4075 4374 9.855021 AAGGAATAACATGTGCTAATAACAAAC 57.145 29.630 0.00 0.00 0.00 2.93
4077 4376 9.237187 TGAAGGAATAACATGTGCTAATAACAA 57.763 29.630 0.00 0.00 0.00 2.83
4078 4377 8.800370 TGAAGGAATAACATGTGCTAATAACA 57.200 30.769 0.00 0.00 0.00 2.41
4097 4396 2.151202 GACAACGCTCCAATTGAAGGA 58.849 47.619 7.12 0.00 0.00 3.36
4130 4429 5.009410 AGTCAGGCATGCTGCTATTTATTTC 59.991 40.000 18.92 0.00 44.28 2.17
4250 4718 3.810310 ACAGCAGAATAGCTACTGTCC 57.190 47.619 11.73 0.00 45.99 4.02
4255 4723 4.688021 AGCACTAACAGCAGAATAGCTAC 58.312 43.478 0.00 0.00 44.54 3.58
4286 4754 5.046159 TGAGGTTTAGGGGTGTTGTGTATAG 60.046 44.000 0.00 0.00 0.00 1.31
4359 4827 2.468301 TCTGCAGAAGAGGCTAGGAT 57.532 50.000 15.67 0.00 0.00 3.24
4421 4889 1.070445 GAGCAGTGATGGCGCCTAT 59.930 57.895 29.70 19.23 36.08 2.57
4556 5024 3.470267 GCGAAAGGCGTGATCGAA 58.530 55.556 16.20 0.00 43.41 3.71
4892 5360 1.737236 GCAAAGTGCGGTGACATATCA 59.263 47.619 0.00 0.00 31.71 2.15
4954 5422 2.847234 TTGTCAGGACGGGGCACT 60.847 61.111 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.