Multiple sequence alignment - TraesCS5B01G148000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G148000 chr5B 100.000 3035 0 0 1 3035 276250557 276253591 0.000000e+00 5605.0
1 TraesCS5B01G148000 chr5B 86.667 120 13 2 2371 2487 622203169 622203050 2.460000e-26 130.0
2 TraesCS5B01G148000 chr5A 92.119 1675 72 15 622 2246 327092150 327093814 0.000000e+00 2307.0
3 TraesCS5B01G148000 chr5A 97.797 590 8 3 1 588 327091565 327092151 0.000000e+00 1013.0
4 TraesCS5B01G148000 chr5A 94.602 352 14 4 174 523 530205755 530205407 9.570000e-150 540.0
5 TraesCS5B01G148000 chr5A 90.551 381 16 10 303 682 634744193 634744554 1.260000e-133 486.0
6 TraesCS5B01G148000 chr5A 89.198 324 29 3 2600 2923 327096835 327097152 1.700000e-107 399.0
7 TraesCS5B01G148000 chr5D 95.228 1383 52 3 825 2193 229352447 229351065 0.000000e+00 2176.0
8 TraesCS5B01G148000 chr5D 94.350 761 16 7 1 759 229353529 229352794 0.000000e+00 1142.0
9 TraesCS5B01G148000 chr5D 89.415 359 34 4 2493 2850 229325199 229324844 1.660000e-122 449.0
10 TraesCS5B01G148000 chr5D 94.330 194 9 2 2844 3035 229294537 229294344 2.290000e-76 296.0
11 TraesCS5B01G148000 chr2A 91.089 505 23 11 179 682 110283087 110283570 0.000000e+00 664.0
12 TraesCS5B01G148000 chr2A 88.627 510 18 19 174 682 55077530 55077060 4.360000e-163 584.0
13 TraesCS5B01G148000 chr2A 87.843 510 22 11 174 682 599679135 599678665 2.040000e-156 562.0
14 TraesCS5B01G148000 chr7A 89.020 510 16 11 174 682 578433059 578432589 2.010000e-166 595.0
15 TraesCS5B01G148000 chr7A 88.235 510 19 11 174 682 493515282 493515751 3.390000e-159 571.0
16 TraesCS5B01G148000 chr1A 88.650 511 17 12 174 682 7947086 7947557 4.360000e-163 584.0
17 TraesCS5B01G148000 chr1A 88.605 509 18 11 175 682 539851971 539851502 1.570000e-162 582.0
18 TraesCS5B01G148000 chr6A 88.431 510 19 11 174 682 436390551 436391021 2.030000e-161 579.0
19 TraesCS5B01G148000 chrUn 87.179 117 12 3 2371 2486 46000469 46000583 2.460000e-26 130.0
20 TraesCS5B01G148000 chrUn 84.615 117 17 1 2371 2487 401061010 401060895 6.880000e-22 115.0
21 TraesCS5B01G148000 chrUn 84.615 117 17 1 2371 2487 401370585 401370470 6.880000e-22 115.0
22 TraesCS5B01G148000 chrUn 84.167 120 18 1 2368 2487 470107484 470107602 6.880000e-22 115.0
23 TraesCS5B01G148000 chr1B 86.441 118 15 1 2371 2487 73127951 73127834 8.830000e-26 128.0
24 TraesCS5B01G148000 chr7B 85.246 122 15 3 2368 2487 165297471 165297591 4.110000e-24 122.0
25 TraesCS5B01G148000 chr7B 90.909 44 4 0 2327 2370 635354065 635354022 3.270000e-05 60.2
26 TraesCS5B01G148000 chr3A 85.470 117 16 1 2371 2487 576204571 576204456 1.480000e-23 121.0
27 TraesCS5B01G148000 chr2D 85.124 121 10 5 2371 2487 609233341 609233225 1.910000e-22 117.0
28 TraesCS5B01G148000 chr1D 78.947 152 26 5 2846 2992 206110370 206110220 6.920000e-17 99.0
29 TraesCS5B01G148000 chr3B 93.182 44 3 0 2328 2371 446637017 446637060 7.020000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G148000 chr5B 276250557 276253591 3034 False 5605.000000 5605 100.000 1 3035 1 chr5B.!!$F1 3034
1 TraesCS5B01G148000 chr5A 327091565 327097152 5587 False 1239.666667 2307 93.038 1 2923 3 chr5A.!!$F2 2922
2 TraesCS5B01G148000 chr5D 229351065 229353529 2464 True 1659.000000 2176 94.789 1 2193 2 chr5D.!!$R3 2192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 800 0.179111 CATTGAATGCTGGCTGGCAG 60.179 55.0 25.23 25.23 45.75 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2590 0.112606 AGAGAACGGTGACTGAGGGA 59.887 55.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 6.361768 TTCCCAAAGTGTAAAAAGGTTTGT 57.638 33.333 0.00 0.00 0.00 2.83
90 91 5.067283 AGTGTAAAAAGGTTTGTCGATGCTT 59.933 36.000 0.00 0.00 0.00 3.91
91 92 5.398416 GTGTAAAAAGGTTTGTCGATGCTTC 59.602 40.000 0.00 0.00 0.00 3.86
92 93 4.647424 AAAAAGGTTTGTCGATGCTTCA 57.353 36.364 0.08 0.00 0.00 3.02
433 436 4.167892 TCCTTGGGTGTATCTGGCATATTT 59.832 41.667 0.00 0.00 0.00 1.40
440 443 7.782168 TGGGTGTATCTGGCATATTTTGAATAA 59.218 33.333 0.00 0.00 0.00 1.40
582 586 2.730382 TGATGCAGCATGAGGTTGAAT 58.270 42.857 14.22 0.00 39.69 2.57
590 594 2.675889 GCATGAGGTTGAATGCCAAAGG 60.676 50.000 0.00 0.00 42.73 3.11
608 612 0.253044 GGGTGTTGGATGCTGCTAGA 59.747 55.000 0.00 0.00 0.00 2.43
625 629 8.478066 TGCTGCTAGATTTATCTTGAGAAACTA 58.522 33.333 0.00 0.00 38.32 2.24
642 646 5.471456 AGAAACTAGAGGCATCACAAACAAG 59.529 40.000 0.00 0.00 0.00 3.16
692 696 2.666526 GAGGATTCCGGGATGCGC 60.667 66.667 8.83 5.23 0.00 6.09
786 800 0.179111 CATTGAATGCTGGCTGGCAG 60.179 55.000 25.23 25.23 45.75 4.85
787 801 1.956629 ATTGAATGCTGGCTGGCAGC 61.957 55.000 39.46 39.46 45.75 5.25
788 802 2.754658 GAATGCTGGCTGGCAGCT 60.755 61.111 42.50 30.65 45.75 4.24
789 803 2.283676 AATGCTGGCTGGCAGCTT 60.284 55.556 42.50 36.59 45.75 3.74
790 804 2.558554 GAATGCTGGCTGGCAGCTTG 62.559 60.000 42.50 27.76 45.75 4.01
810 824 5.514274 TTGGCAAGTCAAGACTAAAAAGG 57.486 39.130 2.72 0.00 41.58 3.11
811 825 3.317993 TGGCAAGTCAAGACTAAAAAGGC 59.682 43.478 2.72 5.03 41.58 4.35
812 826 3.305403 GGCAAGTCAAGACTAAAAAGGCC 60.305 47.826 2.72 0.00 41.58 5.19
813 827 3.317993 GCAAGTCAAGACTAAAAAGGCCA 59.682 43.478 5.01 0.00 41.58 5.36
814 828 4.793028 GCAAGTCAAGACTAAAAAGGCCAC 60.793 45.833 5.01 0.00 41.58 5.01
815 829 3.487372 AGTCAAGACTAAAAAGGCCACC 58.513 45.455 5.01 0.00 40.43 4.61
816 830 3.138468 AGTCAAGACTAAAAAGGCCACCT 59.862 43.478 5.01 0.00 40.43 4.00
818 832 2.558359 CAAGACTAAAAAGGCCACCTGG 59.442 50.000 5.01 0.00 32.13 4.45
820 834 2.983898 AGACTAAAAAGGCCACCTGGTA 59.016 45.455 5.01 0.00 37.57 3.25
834 1127 5.551233 CCACCTGGTATAGTGGTATTCATG 58.449 45.833 0.00 0.00 46.99 3.07
844 1137 3.956199 AGTGGTATTCATGCCAAATCCAG 59.044 43.478 0.00 0.00 44.22 3.86
861 1154 1.021390 CAGTTGACCGATCACAGCCC 61.021 60.000 0.00 0.00 33.38 5.19
867 1160 2.436646 CGATCACAGCCCCACACC 60.437 66.667 0.00 0.00 0.00 4.16
869 1162 2.858476 ATCACAGCCCCACACCCA 60.858 61.111 0.00 0.00 0.00 4.51
872 1165 4.204028 ACAGCCCCACACCCACAC 62.204 66.667 0.00 0.00 0.00 3.82
874 1167 4.204028 AGCCCCACACCCACACAC 62.204 66.667 0.00 0.00 0.00 3.82
876 1169 2.520458 CCCCACACCCACACACAT 59.480 61.111 0.00 0.00 0.00 3.21
912 1207 2.798680 CTTCGATCCTTGTTCGACGAT 58.201 47.619 0.00 0.00 44.59 3.73
944 1251 4.908156 GCTGAATAGATGCGTTGCAAATAG 59.092 41.667 0.00 0.00 43.62 1.73
946 1253 6.676237 TGAATAGATGCGTTGCAAATAGAA 57.324 33.333 0.00 0.00 43.62 2.10
958 1265 4.889832 GCAAATAGAATGCAGCAGTAGT 57.110 40.909 0.00 0.00 43.29 2.73
972 1279 1.064803 CAGTAGTCCAGCAGCGAGTAG 59.935 57.143 0.00 0.00 0.00 2.57
1011 1318 2.103736 CGCGAGATGAGCTGCTCA 59.896 61.111 32.07 32.07 44.99 4.26
1015 1322 1.882167 GAGATGAGCTGCTCACCGC 60.882 63.158 32.54 22.72 43.63 5.68
1016 1323 3.260483 GATGAGCTGCTCACCGCG 61.260 66.667 32.54 0.00 43.63 6.46
1037 1344 1.843376 CAGGACCTGACCACCACCT 60.843 63.158 17.22 0.00 32.44 4.00
1044 1351 1.770110 TGACCACCACCTCCTGCTT 60.770 57.895 0.00 0.00 0.00 3.91
1361 1668 2.759973 CTCCTCCCTGTGCCGCTA 60.760 66.667 0.00 0.00 0.00 4.26
1552 1859 3.303135 TGGCCGACTTCGAGCTGT 61.303 61.111 0.00 0.00 43.02 4.40
1990 2297 3.337619 GGCAGCTGATATGTGCCG 58.662 61.111 20.43 0.00 46.95 5.69
2094 2401 2.807967 CTGTTCCGAATGTTTCAGCTGA 59.192 45.455 13.74 13.74 0.00 4.26
2246 2577 2.882761 GTGAAACTCCCAAAGTGGTACC 59.117 50.000 4.43 4.43 38.58 3.34
2247 2578 2.158579 TGAAACTCCCAAAGTGGTACCC 60.159 50.000 10.07 0.32 38.58 3.69
2248 2579 0.399075 AACTCCCAAAGTGGTACCCG 59.601 55.000 10.07 0.00 38.58 5.28
2249 2580 0.765519 ACTCCCAAAGTGGTACCCGT 60.766 55.000 10.07 0.00 36.65 5.28
2251 2582 0.763604 TCCCAAAGTGGTACCCGTGA 60.764 55.000 10.07 0.00 35.17 4.35
2253 2584 0.953960 CCAAAGTGGTACCCGTGAGC 60.954 60.000 10.07 0.00 31.35 4.26
2254 2585 0.953960 CAAAGTGGTACCCGTGAGCC 60.954 60.000 10.07 0.00 0.00 4.70
2255 2586 2.120737 AAAGTGGTACCCGTGAGCCC 62.121 60.000 10.07 0.00 0.00 5.19
2256 2587 3.315949 GTGGTACCCGTGAGCCCA 61.316 66.667 10.07 0.00 0.00 5.36
2259 2590 1.301954 GGTACCCGTGAGCCCAAAT 59.698 57.895 0.00 0.00 0.00 2.32
2261 2592 0.746923 GTACCCGTGAGCCCAAATCC 60.747 60.000 0.00 0.00 0.00 3.01
2262 2593 1.917336 TACCCGTGAGCCCAAATCCC 61.917 60.000 0.00 0.00 0.00 3.85
2263 2594 2.677228 CCGTGAGCCCAAATCCCT 59.323 61.111 0.00 0.00 0.00 4.20
2264 2595 1.452108 CCGTGAGCCCAAATCCCTC 60.452 63.158 0.00 0.00 0.00 4.30
2266 2597 0.745845 CGTGAGCCCAAATCCCTCAG 60.746 60.000 0.00 0.00 36.38 3.35
2267 2598 0.329596 GTGAGCCCAAATCCCTCAGT 59.670 55.000 0.00 0.00 36.38 3.41
2269 2600 0.620556 GAGCCCAAATCCCTCAGTCA 59.379 55.000 0.00 0.00 0.00 3.41
2272 4275 0.392998 CCCAAATCCCTCAGTCACCG 60.393 60.000 0.00 0.00 0.00 4.94
2273 4276 0.324943 CCAAATCCCTCAGTCACCGT 59.675 55.000 0.00 0.00 0.00 4.83
2280 4283 2.168496 CCCTCAGTCACCGTTCTCTTA 58.832 52.381 0.00 0.00 0.00 2.10
2286 4289 2.169330 GTCACCGTTCTCTTACCCTCT 58.831 52.381 0.00 0.00 0.00 3.69
2291 4294 1.112950 GTTCTCTTACCCTCTCCCCG 58.887 60.000 0.00 0.00 0.00 5.73
2294 4297 2.365105 CTTACCCTCTCCCCGCCA 60.365 66.667 0.00 0.00 0.00 5.69
2295 4298 2.686106 TTACCCTCTCCCCGCCAC 60.686 66.667 0.00 0.00 0.00 5.01
2300 4517 2.427245 CCTCTCCCCGCCACACTAG 61.427 68.421 0.00 0.00 0.00 2.57
2301 4518 1.379977 CTCTCCCCGCCACACTAGA 60.380 63.158 0.00 0.00 0.00 2.43
2307 4524 1.144057 CCGCCACACTAGATCCACC 59.856 63.158 0.00 0.00 0.00 4.61
2308 4525 1.226974 CGCCACACTAGATCCACCG 60.227 63.158 0.00 0.00 0.00 4.94
2311 4528 1.878522 CACACTAGATCCACCGCGC 60.879 63.158 0.00 0.00 0.00 6.86
2312 4529 2.279517 CACTAGATCCACCGCGCC 60.280 66.667 0.00 0.00 0.00 6.53
2313 4530 3.900892 ACTAGATCCACCGCGCCG 61.901 66.667 0.00 0.00 0.00 6.46
2343 4560 3.377656 GGGACGAGACTTGCCTGA 58.622 61.111 0.00 0.00 0.00 3.86
2344 4561 1.216710 GGGACGAGACTTGCCTGAG 59.783 63.158 0.00 0.00 0.00 3.35
2345 4562 1.446966 GGACGAGACTTGCCTGAGC 60.447 63.158 0.00 0.00 40.48 4.26
2346 4563 1.446966 GACGAGACTTGCCTGAGCC 60.447 63.158 0.00 0.00 38.69 4.70
2347 4564 2.125350 CGAGACTTGCCTGAGCCC 60.125 66.667 0.00 0.00 38.69 5.19
2349 4566 2.530151 AGACTTGCCTGAGCCCCA 60.530 61.111 0.00 0.00 38.69 4.96
2350 4567 1.919600 GAGACTTGCCTGAGCCCCAT 61.920 60.000 0.00 0.00 38.69 4.00
2351 4568 1.751927 GACTTGCCTGAGCCCCATG 60.752 63.158 0.00 0.00 38.69 3.66
2352 4569 3.145551 CTTGCCTGAGCCCCATGC 61.146 66.667 0.00 0.00 38.69 4.06
2366 4583 4.881440 ATGCGTGCGCCCATCCAT 62.881 61.111 14.16 0.00 41.09 3.41
2370 4587 3.589881 GTGCGCCCATCCATGCTC 61.590 66.667 4.18 0.00 0.00 4.26
2371 4588 4.112433 TGCGCCCATCCATGCTCA 62.112 61.111 4.18 0.00 0.00 4.26
2372 4589 3.589881 GCGCCCATCCATGCTCAC 61.590 66.667 0.00 0.00 0.00 3.51
2373 4590 2.903855 CGCCCATCCATGCTCACC 60.904 66.667 0.00 0.00 0.00 4.02
2375 4592 2.196776 CCCATCCATGCTCACCCC 59.803 66.667 0.00 0.00 0.00 4.95
2376 4593 2.203252 CCATCCATGCTCACCCCG 60.203 66.667 0.00 0.00 0.00 5.73
2377 4594 2.591753 CATCCATGCTCACCCCGT 59.408 61.111 0.00 0.00 0.00 5.28
2378 4595 1.077501 CATCCATGCTCACCCCGTT 60.078 57.895 0.00 0.00 0.00 4.44
2379 4596 0.180171 CATCCATGCTCACCCCGTTA 59.820 55.000 0.00 0.00 0.00 3.18
2380 4597 0.916086 ATCCATGCTCACCCCGTTAA 59.084 50.000 0.00 0.00 0.00 2.01
2381 4598 0.693622 TCCATGCTCACCCCGTTAAA 59.306 50.000 0.00 0.00 0.00 1.52
2383 4600 2.099405 CCATGCTCACCCCGTTAAAAT 58.901 47.619 0.00 0.00 0.00 1.82
2384 4601 2.099098 CCATGCTCACCCCGTTAAAATC 59.901 50.000 0.00 0.00 0.00 2.17
2385 4602 2.570415 TGCTCACCCCGTTAAAATCA 57.430 45.000 0.00 0.00 0.00 2.57
2387 4604 2.039216 TGCTCACCCCGTTAAAATCAGA 59.961 45.455 0.00 0.00 0.00 3.27
2388 4605 2.678336 GCTCACCCCGTTAAAATCAGAG 59.322 50.000 0.00 0.00 0.00 3.35
2391 4608 2.026636 CACCCCGTTAAAATCAGAGGGA 60.027 50.000 0.00 0.00 41.26 4.20
2392 4609 2.850568 ACCCCGTTAAAATCAGAGGGAT 59.149 45.455 0.00 0.00 41.26 3.85
2394 4611 3.118038 CCCCGTTAAAATCAGAGGGATGA 60.118 47.826 0.00 0.00 41.26 2.92
2397 4614 6.296026 CCCGTTAAAATCAGAGGGATGATTA 58.704 40.000 2.61 0.00 46.64 1.75
2398 4615 6.428159 CCCGTTAAAATCAGAGGGATGATTAG 59.572 42.308 2.61 0.00 46.64 1.73
2400 4617 7.880195 CCGTTAAAATCAGAGGGATGATTAGAT 59.120 37.037 2.61 0.00 46.64 1.98
2401 4618 9.277783 CGTTAAAATCAGAGGGATGATTAGATT 57.722 33.333 2.61 0.00 46.64 2.40
2405 4622 8.748179 AAATCAGAGGGATGATTAGATTAGGA 57.252 34.615 2.61 0.00 46.64 2.94
2406 4623 8.748179 AATCAGAGGGATGATTAGATTAGGAA 57.252 34.615 0.25 0.00 45.75 3.36
2407 4624 7.789202 TCAGAGGGATGATTAGATTAGGAAG 57.211 40.000 0.00 0.00 0.00 3.46
2408 4625 6.728164 TCAGAGGGATGATTAGATTAGGAAGG 59.272 42.308 0.00 0.00 0.00 3.46
2409 4626 6.728164 CAGAGGGATGATTAGATTAGGAAGGA 59.272 42.308 0.00 0.00 0.00 3.36
2410 4627 7.236432 CAGAGGGATGATTAGATTAGGAAGGAA 59.764 40.741 0.00 0.00 0.00 3.36
2411 4628 7.796637 AGAGGGATGATTAGATTAGGAAGGAAA 59.203 37.037 0.00 0.00 0.00 3.13
2413 4630 8.791749 AGGGATGATTAGATTAGGAAGGAAAAA 58.208 33.333 0.00 0.00 0.00 1.94
2414 4631 9.072375 GGGATGATTAGATTAGGAAGGAAAAAG 57.928 37.037 0.00 0.00 0.00 2.27
2422 4639 8.195165 AGATTAGGAAGGAAAAAGAAAAAGGG 57.805 34.615 0.00 0.00 0.00 3.95
2423 4640 8.010697 AGATTAGGAAGGAAAAAGAAAAAGGGA 58.989 33.333 0.00 0.00 0.00 4.20
2425 4642 5.277250 AGGAAGGAAAAAGAAAAAGGGACA 58.723 37.500 0.00 0.00 0.00 4.02
2426 4643 5.724370 AGGAAGGAAAAAGAAAAAGGGACAA 59.276 36.000 0.00 0.00 0.00 3.18
2427 4644 6.386927 AGGAAGGAAAAAGAAAAAGGGACAAT 59.613 34.615 0.00 0.00 0.00 2.71
2428 4645 6.706270 GGAAGGAAAAAGAAAAAGGGACAATC 59.294 38.462 0.00 0.00 0.00 2.67
2429 4646 6.806668 AGGAAAAAGAAAAAGGGACAATCA 57.193 33.333 0.00 0.00 0.00 2.57
2430 4647 7.379059 AGGAAAAAGAAAAAGGGACAATCAT 57.621 32.000 0.00 0.00 0.00 2.45
2431 4648 8.491045 AGGAAAAAGAAAAAGGGACAATCATA 57.509 30.769 0.00 0.00 0.00 2.15
2433 4650 8.585018 GGAAAAAGAAAAAGGGACAATCATAGA 58.415 33.333 0.00 0.00 0.00 1.98
2435 4652 8.712228 AAAAGAAAAAGGGACAATCATAGAGT 57.288 30.769 0.00 0.00 0.00 3.24
2437 4654 7.020827 AGAAAAAGGGACAATCATAGAGTGA 57.979 36.000 1.16 0.00 42.06 3.41
2438 4655 7.461749 AGAAAAAGGGACAATCATAGAGTGAA 58.538 34.615 1.16 0.00 40.97 3.18
2439 4656 7.609532 AGAAAAAGGGACAATCATAGAGTGAAG 59.390 37.037 1.16 0.00 40.97 3.02
2440 4657 6.380079 AAAGGGACAATCATAGAGTGAAGT 57.620 37.500 1.16 0.00 40.97 3.01
2441 4658 5.350504 AGGGACAATCATAGAGTGAAGTG 57.649 43.478 1.16 0.00 40.97 3.16
2442 4659 4.163078 AGGGACAATCATAGAGTGAAGTGG 59.837 45.833 1.16 0.00 40.97 4.00
2443 4660 4.446371 GGACAATCATAGAGTGAAGTGGG 58.554 47.826 1.16 0.00 40.97 4.61
2444 4661 4.162320 GGACAATCATAGAGTGAAGTGGGA 59.838 45.833 1.16 0.00 40.97 4.37
2445 4662 5.350504 ACAATCATAGAGTGAAGTGGGAG 57.649 43.478 1.16 0.00 40.97 4.30
2446 4663 4.780021 ACAATCATAGAGTGAAGTGGGAGT 59.220 41.667 1.16 0.00 40.97 3.85
2448 5234 6.127310 ACAATCATAGAGTGAAGTGGGAGTAC 60.127 42.308 1.16 0.00 40.97 2.73
2455 5241 1.272816 TGAAGTGGGAGTACGGATGGA 60.273 52.381 0.00 0.00 0.00 3.41
2456 5242 1.829222 GAAGTGGGAGTACGGATGGAA 59.171 52.381 0.00 0.00 0.00 3.53
2458 5244 0.179081 GTGGGAGTACGGATGGAAGC 60.179 60.000 0.00 0.00 0.00 3.86
2459 5245 0.616395 TGGGAGTACGGATGGAAGCA 60.616 55.000 0.00 0.00 0.00 3.91
2462 5248 1.541233 GGAGTACGGATGGAAGCATGG 60.541 57.143 0.00 0.00 0.00 3.66
2466 5252 1.228063 CGGATGGAAGCATGGGGAG 60.228 63.158 0.00 0.00 0.00 4.30
2471 5257 2.194326 GAAGCATGGGGAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
2474 5260 3.092511 GCATGGGGAGGGAGCAGA 61.093 66.667 0.00 0.00 0.00 4.26
2475 5261 2.914289 CATGGGGAGGGAGCAGAC 59.086 66.667 0.00 0.00 0.00 3.51
2476 5262 1.997311 CATGGGGAGGGAGCAGACA 60.997 63.158 0.00 0.00 0.00 3.41
2477 5263 1.229951 ATGGGGAGGGAGCAGACAA 60.230 57.895 0.00 0.00 0.00 3.18
2478 5264 1.277580 ATGGGGAGGGAGCAGACAAG 61.278 60.000 0.00 0.00 0.00 3.16
2479 5265 2.270527 GGGAGGGAGCAGACAAGC 59.729 66.667 0.00 0.00 0.00 4.01
2480 5266 2.270527 GGAGGGAGCAGACAAGCC 59.729 66.667 0.00 0.00 34.23 4.35
2481 5267 2.125350 GAGGGAGCAGACAAGCCG 60.125 66.667 0.00 0.00 34.23 5.52
2482 5268 2.604686 AGGGAGCAGACAAGCCGA 60.605 61.111 0.00 0.00 34.23 5.54
2483 5269 2.172483 GAGGGAGCAGACAAGCCGAA 62.172 60.000 0.00 0.00 34.23 4.30
2484 5270 1.078143 GGGAGCAGACAAGCCGAAT 60.078 57.895 0.00 0.00 34.23 3.34
2486 5272 1.092345 GGAGCAGACAAGCCGAATCC 61.092 60.000 0.00 0.00 34.23 3.01
2488 5274 0.392193 AGCAGACAAGCCGAATCCAG 60.392 55.000 0.00 0.00 34.23 3.86
2490 5276 0.745845 CAGACAAGCCGAATCCAGGG 60.746 60.000 0.00 0.00 0.00 4.45
2491 5277 1.201429 AGACAAGCCGAATCCAGGGT 61.201 55.000 0.00 0.00 41.89 4.34
2492 5278 1.002134 ACAAGCCGAATCCAGGGTG 60.002 57.895 0.00 0.00 39.72 4.61
2493 5279 2.044946 AAGCCGAATCCAGGGTGC 60.045 61.111 0.00 0.00 39.72 5.01
2494 5280 3.976701 AAGCCGAATCCAGGGTGCG 62.977 63.158 0.00 0.00 39.72 5.34
2495 5281 4.467084 GCCGAATCCAGGGTGCGA 62.467 66.667 0.00 0.00 0.00 5.10
2496 5282 2.202932 CCGAATCCAGGGTGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
2498 5284 2.268920 GAATCCAGGGTGCGAGCA 59.731 61.111 0.00 0.00 0.00 4.26
2499 5285 1.153086 GAATCCAGGGTGCGAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
2501 5287 4.783621 TCCAGGGTGCGAGCATGC 62.784 66.667 10.51 10.51 0.00 4.06
2510 5296 4.794439 CGAGCATGCCGTCGTGGA 62.794 66.667 15.66 0.00 42.00 4.02
2511 5297 2.434185 GAGCATGCCGTCGTGGAA 60.434 61.111 15.66 0.00 42.00 3.53
2512 5298 1.815421 GAGCATGCCGTCGTGGAAT 60.815 57.895 15.66 0.00 42.00 3.01
2523 5309 0.446616 TCGTGGAATGACGAGAGACG 59.553 55.000 0.00 0.00 43.26 4.18
2537 5323 2.102070 GAGACGTCCTCTGACTCTGA 57.898 55.000 13.01 0.00 39.47 3.27
2539 5325 2.612212 GAGACGTCCTCTGACTCTGATC 59.388 54.545 13.01 0.00 39.47 2.92
2541 5327 2.612212 GACGTCCTCTGACTCTGATCTC 59.388 54.545 3.51 0.00 39.47 2.75
2542 5328 1.597195 CGTCCTCTGACTCTGATCTCG 59.403 57.143 0.00 0.00 39.47 4.04
2543 5329 2.740256 CGTCCTCTGACTCTGATCTCGA 60.740 54.545 0.00 0.00 39.47 4.04
2544 5330 3.476552 GTCCTCTGACTCTGATCTCGAT 58.523 50.000 0.00 0.00 38.53 3.59
2546 5332 4.338118 GTCCTCTGACTCTGATCTCGATTT 59.662 45.833 0.00 0.00 38.53 2.17
2547 5333 4.578516 TCCTCTGACTCTGATCTCGATTTC 59.421 45.833 0.00 0.00 0.00 2.17
2550 5336 6.293407 CCTCTGACTCTGATCTCGATTTCTAC 60.293 46.154 0.00 0.00 0.00 2.59
2551 5337 6.353323 TCTGACTCTGATCTCGATTTCTACT 58.647 40.000 0.00 0.00 0.00 2.57
2552 5338 6.481976 TCTGACTCTGATCTCGATTTCTACTC 59.518 42.308 0.00 0.00 0.00 2.59
2553 5339 5.529430 TGACTCTGATCTCGATTTCTACTCC 59.471 44.000 0.00 0.00 0.00 3.85
2554 5340 4.513692 ACTCTGATCTCGATTTCTACTCCG 59.486 45.833 0.00 0.00 0.00 4.63
2555 5341 4.704965 TCTGATCTCGATTTCTACTCCGA 58.295 43.478 0.00 0.00 0.00 4.55
2556 5342 5.309638 TCTGATCTCGATTTCTACTCCGAT 58.690 41.667 0.00 0.00 0.00 4.18
2557 5343 6.465084 TCTGATCTCGATTTCTACTCCGATA 58.535 40.000 0.00 0.00 0.00 2.92
2558 5344 6.935208 TCTGATCTCGATTTCTACTCCGATAA 59.065 38.462 0.00 0.00 0.00 1.75
2560 5346 7.530863 TGATCTCGATTTCTACTCCGATAATG 58.469 38.462 0.00 0.00 0.00 1.90
2561 5347 7.390718 TGATCTCGATTTCTACTCCGATAATGA 59.609 37.037 0.00 0.00 0.00 2.57
2563 5349 8.112016 TCTCGATTTCTACTCCGATAATGATT 57.888 34.615 0.00 0.00 0.00 2.57
2564 5350 8.237949 TCTCGATTTCTACTCCGATAATGATTC 58.762 37.037 0.00 0.00 0.00 2.52
2565 5351 7.021790 TCGATTTCTACTCCGATAATGATTCG 58.978 38.462 0.00 0.00 36.38 3.34
2566 5352 7.021790 CGATTTCTACTCCGATAATGATTCGA 58.978 38.462 0.00 0.00 38.88 3.71
2567 5353 7.698550 CGATTTCTACTCCGATAATGATTCGAT 59.301 37.037 0.00 0.00 38.88 3.59
2568 5354 8.694975 ATTTCTACTCCGATAATGATTCGATG 57.305 34.615 0.00 0.00 38.88 3.84
2569 5355 7.448748 TTCTACTCCGATAATGATTCGATGA 57.551 36.000 0.00 0.00 38.88 2.92
2570 5356 7.078011 TCTACTCCGATAATGATTCGATGAG 57.922 40.000 0.00 0.00 38.88 2.90
2571 5357 5.065704 ACTCCGATAATGATTCGATGAGG 57.934 43.478 0.00 0.00 38.88 3.86
2573 5359 5.105957 ACTCCGATAATGATTCGATGAGGAG 60.106 44.000 0.00 0.00 44.96 3.69
2574 5360 4.767409 TCCGATAATGATTCGATGAGGAGT 59.233 41.667 0.00 0.00 38.88 3.85
2575 5361 4.861462 CCGATAATGATTCGATGAGGAGTG 59.139 45.833 0.00 0.00 38.88 3.51
2577 5363 6.152379 CGATAATGATTCGATGAGGAGTGAA 58.848 40.000 0.00 0.00 38.88 3.18
2578 5364 6.088749 CGATAATGATTCGATGAGGAGTGAAC 59.911 42.308 0.00 0.00 38.88 3.18
2581 5367 3.056821 TGATTCGATGAGGAGTGAACGTT 60.057 43.478 0.00 0.00 0.00 3.99
2584 5370 2.492088 TCGATGAGGAGTGAACGTTGAT 59.508 45.455 5.00 0.00 0.00 2.57
2586 5372 3.428180 CGATGAGGAGTGAACGTTGATCT 60.428 47.826 5.00 0.28 0.00 2.75
2587 5373 3.303881 TGAGGAGTGAACGTTGATCTG 57.696 47.619 5.00 0.00 0.00 2.90
2588 5374 2.029020 TGAGGAGTGAACGTTGATCTGG 60.029 50.000 5.00 0.00 0.00 3.86
2589 5375 1.079503 GGAGTGAACGTTGATCTGGC 58.920 55.000 5.00 0.00 0.00 4.85
2590 5376 1.338200 GGAGTGAACGTTGATCTGGCT 60.338 52.381 5.00 0.00 0.00 4.75
2591 5377 2.417719 GAGTGAACGTTGATCTGGCTT 58.582 47.619 5.00 0.00 0.00 4.35
2593 5379 3.214328 AGTGAACGTTGATCTGGCTTTT 58.786 40.909 5.00 0.00 0.00 2.27
2594 5380 3.251004 AGTGAACGTTGATCTGGCTTTTC 59.749 43.478 5.00 0.00 0.00 2.29
2595 5381 2.552315 TGAACGTTGATCTGGCTTTTCC 59.448 45.455 5.00 0.00 0.00 3.13
2596 5382 1.534729 ACGTTGATCTGGCTTTTCCC 58.465 50.000 0.00 0.00 0.00 3.97
2598 5384 0.811281 GTTGATCTGGCTTTTCCCGG 59.189 55.000 0.00 0.00 0.00 5.73
2599 5385 0.404040 TTGATCTGGCTTTTCCCGGT 59.596 50.000 0.00 0.00 32.85 5.28
2600 5386 0.404040 TGATCTGGCTTTTCCCGGTT 59.596 50.000 0.00 0.00 32.85 4.44
2651 5649 3.658757 TTTGGTTGGTGCTTTAGATGC 57.341 42.857 0.00 0.00 0.00 3.91
2653 5651 0.451783 GGTTGGTGCTTTAGATGCCG 59.548 55.000 0.00 0.00 0.00 5.69
2665 5663 1.556564 AGATGCCGTACACGATTTCG 58.443 50.000 2.76 0.00 43.02 3.46
2685 5683 2.273449 CAAGGATTGGAGCGGGCT 59.727 61.111 0.00 0.00 43.94 5.19
2686 5684 1.526887 CAAGGATTGGAGCGGGCTA 59.473 57.895 0.00 0.00 43.94 3.93
2689 5687 2.505982 GATTGGAGCGGGCTAGCA 59.494 61.111 18.24 0.00 40.15 3.49
2690 5688 1.889573 GATTGGAGCGGGCTAGCAC 60.890 63.158 18.24 13.06 40.15 4.40
2691 5689 3.740128 ATTGGAGCGGGCTAGCACG 62.740 63.158 34.47 34.47 46.93 5.34
2711 5709 0.536724 TGATGTATCTGCACGGTGCT 59.463 50.000 30.81 15.64 45.31 4.40
2712 5710 1.066215 TGATGTATCTGCACGGTGCTT 60.066 47.619 30.81 18.78 45.31 3.91
2714 5712 0.608130 TGTATCTGCACGGTGCTTCT 59.392 50.000 30.81 18.00 45.31 2.85
2737 5735 7.680730 TCTATAAGCTTCCTGTGAAAAGAAGT 58.319 34.615 0.00 0.00 39.36 3.01
2781 5779 4.410492 CGAGAGGAAGTTTTTGGATGTG 57.590 45.455 0.00 0.00 0.00 3.21
2823 5821 7.384115 TCTTTTTAACTCACTAGATGACCGTTG 59.616 37.037 0.00 0.00 30.55 4.10
2825 5823 1.135373 ACTCACTAGATGACCGTTGCG 60.135 52.381 0.00 0.00 32.37 4.85
2826 5824 0.885879 TCACTAGATGACCGTTGCGT 59.114 50.000 0.00 0.00 29.99 5.24
2834 5832 0.816018 TGACCGTTGCGTCAATTGGT 60.816 50.000 5.42 14.50 39.78 3.67
2835 5833 0.385473 GACCGTTGCGTCAATTGGTG 60.385 55.000 17.45 0.00 35.92 4.17
2838 5836 1.136085 CCGTTGCGTCAATTGGTGTAG 60.136 52.381 5.42 0.00 0.00 2.74
2855 5853 4.319177 GTGTAGAGATCAAACTGCAACCT 58.681 43.478 0.00 0.00 31.48 3.50
2856 5854 4.153117 GTGTAGAGATCAAACTGCAACCTG 59.847 45.833 0.00 0.00 31.48 4.00
2857 5855 2.787994 AGAGATCAAACTGCAACCTGG 58.212 47.619 0.00 0.00 0.00 4.45
2923 5921 8.516811 TGAACTATTTGAAGAGACGAACTAAC 57.483 34.615 0.00 0.00 0.00 2.34
2924 5922 7.325338 TGAACTATTTGAAGAGACGAACTAACG 59.675 37.037 0.00 0.00 39.31 3.18
2925 5923 6.906659 ACTATTTGAAGAGACGAACTAACGA 58.093 36.000 0.00 0.00 37.03 3.85
2926 5924 7.365741 ACTATTTGAAGAGACGAACTAACGAA 58.634 34.615 0.00 0.00 37.03 3.85
2927 5925 5.878261 TTTGAAGAGACGAACTAACGAAC 57.122 39.130 0.00 0.00 37.03 3.95
2928 5926 4.825546 TGAAGAGACGAACTAACGAACT 57.174 40.909 0.00 0.00 37.03 3.01
2929 5927 4.534168 TGAAGAGACGAACTAACGAACTG 58.466 43.478 0.00 0.00 37.03 3.16
2930 5928 2.931228 AGAGACGAACTAACGAACTGC 58.069 47.619 0.00 0.00 37.03 4.40
2931 5929 2.292569 AGAGACGAACTAACGAACTGCA 59.707 45.455 0.00 0.00 37.03 4.41
2932 5930 3.047796 GAGACGAACTAACGAACTGCAA 58.952 45.455 0.00 0.00 37.03 4.08
2933 5931 2.793232 AGACGAACTAACGAACTGCAAC 59.207 45.455 0.00 0.00 37.03 4.17
2934 5932 2.793232 GACGAACTAACGAACTGCAACT 59.207 45.455 0.00 0.00 37.03 3.16
2935 5933 2.793232 ACGAACTAACGAACTGCAACTC 59.207 45.455 0.00 0.00 37.03 3.01
2936 5934 2.792674 CGAACTAACGAACTGCAACTCA 59.207 45.455 0.00 0.00 35.09 3.41
2937 5935 3.121328 CGAACTAACGAACTGCAACTCAG 60.121 47.826 0.00 0.00 41.01 3.35
2938 5936 3.728076 ACTAACGAACTGCAACTCAGA 57.272 42.857 0.00 0.00 45.72 3.27
2939 5937 4.054780 ACTAACGAACTGCAACTCAGAA 57.945 40.909 0.00 0.00 45.72 3.02
2940 5938 4.632153 ACTAACGAACTGCAACTCAGAAT 58.368 39.130 0.00 0.00 45.72 2.40
2941 5939 5.057149 ACTAACGAACTGCAACTCAGAATT 58.943 37.500 0.00 0.00 45.72 2.17
2942 5940 6.220930 ACTAACGAACTGCAACTCAGAATTA 58.779 36.000 0.00 0.00 45.72 1.40
2943 5941 6.704493 ACTAACGAACTGCAACTCAGAATTAA 59.296 34.615 0.00 0.00 45.72 1.40
2944 5942 5.597813 ACGAACTGCAACTCAGAATTAAG 57.402 39.130 0.00 0.00 45.72 1.85
2945 5943 5.057149 ACGAACTGCAACTCAGAATTAAGT 58.943 37.500 0.00 0.00 45.72 2.24
2946 5944 5.050091 ACGAACTGCAACTCAGAATTAAGTG 60.050 40.000 0.00 0.00 45.72 3.16
2947 5945 5.177511 CGAACTGCAACTCAGAATTAAGTGA 59.822 40.000 0.00 0.00 45.72 3.41
2948 5946 6.292865 CGAACTGCAACTCAGAATTAAGTGAA 60.293 38.462 0.00 0.00 45.72 3.18
2949 5947 6.305693 ACTGCAACTCAGAATTAAGTGAAC 57.694 37.500 0.00 0.00 45.72 3.18
2950 5948 6.058183 ACTGCAACTCAGAATTAAGTGAACT 58.942 36.000 0.00 0.00 45.72 3.01
2951 5949 7.217200 ACTGCAACTCAGAATTAAGTGAACTA 58.783 34.615 0.00 0.00 45.72 2.24
2952 5950 7.880195 ACTGCAACTCAGAATTAAGTGAACTAT 59.120 33.333 0.00 0.00 45.72 2.12
2953 5951 8.621532 TGCAACTCAGAATTAAGTGAACTATT 57.378 30.769 0.00 0.00 0.00 1.73
2954 5952 9.066892 TGCAACTCAGAATTAAGTGAACTATTT 57.933 29.630 0.00 0.00 0.00 1.40
2955 5953 9.334693 GCAACTCAGAATTAAGTGAACTATTTG 57.665 33.333 0.00 0.00 0.00 2.32
2996 5994 8.908786 ATTAAGTGAACTGTTTGAAGAGATCA 57.091 30.769 0.00 0.00 35.85 2.92
2997 5995 8.731275 TTAAGTGAACTGTTTGAAGAGATCAA 57.269 30.769 3.09 0.00 46.22 2.57
3020 6018 9.571816 TCAACTACATCCATTATTATCAATGCA 57.428 29.630 0.00 0.00 35.06 3.96
3023 6021 9.970553 ACTACATCCATTATTATCAATGCATCT 57.029 29.630 0.00 0.00 35.06 2.90
3026 6024 8.957466 ACATCCATTATTATCAATGCATCTCTG 58.043 33.333 0.00 0.00 35.06 3.35
3027 6025 8.957466 CATCCATTATTATCAATGCATCTCTGT 58.043 33.333 0.00 0.00 35.06 3.41
3028 6026 8.929260 TCCATTATTATCAATGCATCTCTGTT 57.071 30.769 0.00 0.00 35.06 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 6.749118 CGACTTATGATATGATGAAGCATCGA 59.251 38.462 0.00 0.00 43.14 3.59
90 91 5.185828 CCAGACCCGACTTATGATATGATGA 59.814 44.000 0.00 0.00 0.00 2.92
91 92 5.414360 CCAGACCCGACTTATGATATGATG 58.586 45.833 0.00 0.00 0.00 3.07
92 93 4.081420 GCCAGACCCGACTTATGATATGAT 60.081 45.833 0.00 0.00 0.00 2.45
440 443 8.348507 CAGAGACAAGCTTCTTTTTCACTTAAT 58.651 33.333 0.00 0.00 0.00 1.40
582 586 1.470996 GCATCCAACACCCTTTGGCA 61.471 55.000 0.00 0.00 45.12 4.92
590 594 2.338577 ATCTAGCAGCATCCAACACC 57.661 50.000 0.00 0.00 0.00 4.16
608 612 8.489489 TGATGCCTCTAGTTTCTCAAGATAAAT 58.511 33.333 0.00 0.00 0.00 1.40
625 629 0.877071 CGCTTGTTTGTGATGCCTCT 59.123 50.000 0.00 0.00 0.00 3.69
642 646 0.664166 CAATGCAACAACACCTCCGC 60.664 55.000 0.00 0.00 0.00 5.54
682 686 1.375853 TTCATTTCAGCGCATCCCGG 61.376 55.000 11.47 0.00 37.44 5.73
719 723 0.935898 CATTGTCTCCTCGCATGCTC 59.064 55.000 17.13 0.00 0.00 4.26
786 800 4.568152 TTTTAGTCTTGACTTGCCAAGC 57.432 40.909 3.88 0.00 42.34 4.01
787 801 5.523369 CCTTTTTAGTCTTGACTTGCCAAG 58.477 41.667 8.66 2.11 43.58 3.61
788 802 4.202111 GCCTTTTTAGTCTTGACTTGCCAA 60.202 41.667 8.66 0.00 0.00 4.52
789 803 3.317993 GCCTTTTTAGTCTTGACTTGCCA 59.682 43.478 8.66 0.00 0.00 4.92
790 804 3.305403 GGCCTTTTTAGTCTTGACTTGCC 60.305 47.826 8.66 8.04 0.00 4.52
791 805 3.317993 TGGCCTTTTTAGTCTTGACTTGC 59.682 43.478 3.32 3.42 0.00 4.01
792 806 4.261614 GGTGGCCTTTTTAGTCTTGACTTG 60.262 45.833 3.32 0.00 0.00 3.16
793 807 3.889538 GGTGGCCTTTTTAGTCTTGACTT 59.110 43.478 3.32 0.00 0.00 3.01
812 826 4.997395 GCATGAATACCACTATACCAGGTG 59.003 45.833 0.76 0.00 36.87 4.00
813 827 4.041691 GGCATGAATACCACTATACCAGGT 59.958 45.833 0.00 0.00 39.41 4.00
814 828 4.041567 TGGCATGAATACCACTATACCAGG 59.958 45.833 0.00 0.00 0.00 4.45
815 829 5.227569 TGGCATGAATACCACTATACCAG 57.772 43.478 0.00 0.00 0.00 4.00
816 830 5.638530 TTGGCATGAATACCACTATACCA 57.361 39.130 0.00 0.00 35.10 3.25
818 832 6.714810 TGGATTTGGCATGAATACCACTATAC 59.285 38.462 0.00 0.00 35.10 1.47
820 834 5.704354 TGGATTTGGCATGAATACCACTAT 58.296 37.500 0.00 0.00 35.10 2.12
834 1127 1.401905 GATCGGTCAACTGGATTTGGC 59.598 52.381 0.00 0.00 0.00 4.52
844 1137 1.745489 GGGGCTGTGATCGGTCAAC 60.745 63.158 0.00 0.00 35.80 3.18
861 1154 2.906939 CGCATGTGTGTGGGTGTGG 61.907 63.158 0.00 0.00 32.19 4.17
869 1162 2.964174 CCATTGCCGCATGTGTGT 59.036 55.556 5.38 0.00 0.00 3.72
872 1165 4.858433 CCGCCATTGCCGCATGTG 62.858 66.667 0.00 0.00 0.00 3.21
874 1167 4.260355 CTCCGCCATTGCCGCATG 62.260 66.667 0.00 0.00 0.00 4.06
912 1207 2.035961 GCATCTATTCAGCGGAGTACCA 59.964 50.000 0.00 0.00 35.59 3.25
944 1251 1.012841 GCTGGACTACTGCTGCATTC 58.987 55.000 1.31 0.00 40.50 2.67
946 1253 0.107800 CTGCTGGACTACTGCTGCAT 60.108 55.000 1.31 0.00 40.95 3.96
972 1279 3.503363 GCTGGTGCCGATGTCAGC 61.503 66.667 0.00 0.00 44.34 4.26
1022 1329 1.536662 AGGAGGTGGTGGTCAGGTC 60.537 63.158 0.00 0.00 0.00 3.85
1037 1344 4.020617 CGAGGGTGGCAAGCAGGA 62.021 66.667 0.00 0.00 0.00 3.86
1110 1417 4.293626 GTGTTGAGCGCGCGTGTT 62.294 61.111 32.35 16.37 0.00 3.32
1458 1765 1.144057 CACCATCCCCTCACGTAGC 59.856 63.158 0.00 0.00 0.00 3.58
1464 1771 4.731853 TCCGCCACCATCCCCTCA 62.732 66.667 0.00 0.00 0.00 3.86
2094 2401 2.198827 TGCATTGACGGATTGACCTT 57.801 45.000 0.00 0.00 36.31 3.50
2168 2475 9.636965 GCACAAAGCAATTAAACTCTTAAAAAG 57.363 29.630 0.00 0.00 44.79 2.27
2246 2577 1.452108 GAGGGATTTGGGCTCACGG 60.452 63.158 0.00 0.00 0.00 4.94
2247 2578 0.745845 CTGAGGGATTTGGGCTCACG 60.746 60.000 0.00 0.00 0.00 4.35
2248 2579 0.329596 ACTGAGGGATTTGGGCTCAC 59.670 55.000 0.00 0.00 0.00 3.51
2249 2580 0.620556 GACTGAGGGATTTGGGCTCA 59.379 55.000 0.00 0.00 0.00 4.26
2251 2582 0.329596 GTGACTGAGGGATTTGGGCT 59.670 55.000 0.00 0.00 0.00 5.19
2253 2584 0.392998 CGGTGACTGAGGGATTTGGG 60.393 60.000 0.00 0.00 0.00 4.12
2254 2585 0.324943 ACGGTGACTGAGGGATTTGG 59.675 55.000 0.00 0.00 0.00 3.28
2255 2586 2.076863 GAACGGTGACTGAGGGATTTG 58.923 52.381 0.00 0.00 0.00 2.32
2256 2587 1.978580 AGAACGGTGACTGAGGGATTT 59.021 47.619 0.00 0.00 0.00 2.17
2259 2590 0.112606 AGAGAACGGTGACTGAGGGA 59.887 55.000 0.00 0.00 0.00 4.20
2261 2592 2.094649 GGTAAGAGAACGGTGACTGAGG 60.095 54.545 0.00 0.00 0.00 3.86
2262 2593 2.094649 GGGTAAGAGAACGGTGACTGAG 60.095 54.545 0.00 0.00 0.00 3.35
2263 2594 1.891150 GGGTAAGAGAACGGTGACTGA 59.109 52.381 0.00 0.00 0.00 3.41
2264 2595 1.893801 AGGGTAAGAGAACGGTGACTG 59.106 52.381 0.00 0.00 0.00 3.51
2266 2597 2.164017 GAGAGGGTAAGAGAACGGTGAC 59.836 54.545 0.00 0.00 0.00 3.67
2267 2598 2.444421 GAGAGGGTAAGAGAACGGTGA 58.556 52.381 0.00 0.00 0.00 4.02
2269 2600 1.619160 GGGAGAGGGTAAGAGAACGGT 60.619 57.143 0.00 0.00 0.00 4.83
2272 4275 1.112950 CGGGGAGAGGGTAAGAGAAC 58.887 60.000 0.00 0.00 0.00 3.01
2273 4276 0.686769 GCGGGGAGAGGGTAAGAGAA 60.687 60.000 0.00 0.00 0.00 2.87
2286 4289 1.760875 GGATCTAGTGTGGCGGGGA 60.761 63.158 0.00 0.00 0.00 4.81
2291 4294 1.521681 GCGGTGGATCTAGTGTGGC 60.522 63.158 0.00 0.00 0.00 5.01
2294 4297 2.494918 GCGCGGTGGATCTAGTGT 59.505 61.111 8.83 0.00 0.00 3.55
2295 4298 2.279517 GGCGCGGTGGATCTAGTG 60.280 66.667 8.83 0.00 0.00 2.74
2320 4537 4.052229 AAGTCTCGTCCCGCACCG 62.052 66.667 0.00 0.00 0.00 4.94
2321 4538 2.432628 CAAGTCTCGTCCCGCACC 60.433 66.667 0.00 0.00 0.00 5.01
2329 4546 2.659610 GGCTCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 40.87 4.18
2331 4548 1.919600 ATGGGGCTCAGGCAAGTCTC 61.920 60.000 0.00 0.00 40.87 3.36
2332 4549 1.927527 ATGGGGCTCAGGCAAGTCT 60.928 57.895 0.00 0.00 40.87 3.24
2333 4550 1.751927 CATGGGGCTCAGGCAAGTC 60.752 63.158 0.00 0.00 40.87 3.01
2334 4551 2.357836 CATGGGGCTCAGGCAAGT 59.642 61.111 0.00 0.00 40.87 3.16
2354 4571 4.112433 TGAGCATGGATGGGCGCA 62.112 61.111 10.83 5.70 37.49 6.09
2355 4572 3.589881 GTGAGCATGGATGGGCGC 61.590 66.667 0.00 0.00 34.54 6.53
2356 4573 2.903855 GGTGAGCATGGATGGGCG 60.904 66.667 0.00 0.00 34.54 6.13
2357 4574 2.520260 GGGTGAGCATGGATGGGC 60.520 66.667 0.00 0.00 0.00 5.36
2359 4576 2.203252 CGGGGTGAGCATGGATGG 60.203 66.667 0.00 0.00 0.00 3.51
2360 4577 0.180171 TAACGGGGTGAGCATGGATG 59.820 55.000 0.00 0.00 0.00 3.51
2361 4578 0.916086 TTAACGGGGTGAGCATGGAT 59.084 50.000 0.00 0.00 0.00 3.41
2362 4579 0.693622 TTTAACGGGGTGAGCATGGA 59.306 50.000 0.00 0.00 0.00 3.41
2363 4580 1.540267 TTTTAACGGGGTGAGCATGG 58.460 50.000 0.00 0.00 0.00 3.66
2364 4581 2.752354 TGATTTTAACGGGGTGAGCATG 59.248 45.455 0.00 0.00 0.00 4.06
2365 4582 3.016736 CTGATTTTAACGGGGTGAGCAT 58.983 45.455 0.00 0.00 0.00 3.79
2366 4583 2.039216 TCTGATTTTAACGGGGTGAGCA 59.961 45.455 0.00 0.00 0.00 4.26
2367 4584 2.678336 CTCTGATTTTAACGGGGTGAGC 59.322 50.000 0.00 0.00 0.00 4.26
2368 4585 3.270877 CCTCTGATTTTAACGGGGTGAG 58.729 50.000 0.00 0.00 0.00 3.51
2369 4586 2.026636 CCCTCTGATTTTAACGGGGTGA 60.027 50.000 0.00 0.00 0.00 4.02
2370 4587 2.026636 TCCCTCTGATTTTAACGGGGTG 60.027 50.000 0.00 0.00 34.44 4.61
2371 4588 2.271777 TCCCTCTGATTTTAACGGGGT 58.728 47.619 0.00 0.00 34.44 4.95
2372 4589 3.118038 TCATCCCTCTGATTTTAACGGGG 60.118 47.826 0.00 0.00 32.52 5.73
2373 4590 4.150897 TCATCCCTCTGATTTTAACGGG 57.849 45.455 0.00 0.00 0.00 5.28
2375 4592 8.839310 ATCTAATCATCCCTCTGATTTTAACG 57.161 34.615 4.79 0.00 41.89 3.18
2379 4596 9.175577 TCCTAATCTAATCATCCCTCTGATTTT 57.824 33.333 4.79 0.00 41.89 1.82
2380 4597 8.748179 TCCTAATCTAATCATCCCTCTGATTT 57.252 34.615 4.79 0.00 41.89 2.17
2381 4598 8.748179 TTCCTAATCTAATCATCCCTCTGATT 57.252 34.615 4.85 4.85 45.44 2.57
2383 4600 6.728164 CCTTCCTAATCTAATCATCCCTCTGA 59.272 42.308 0.00 0.00 0.00 3.27
2384 4601 6.728164 TCCTTCCTAATCTAATCATCCCTCTG 59.272 42.308 0.00 0.00 0.00 3.35
2385 4602 6.879922 TCCTTCCTAATCTAATCATCCCTCT 58.120 40.000 0.00 0.00 0.00 3.69
2387 4604 7.954539 TTTCCTTCCTAATCTAATCATCCCT 57.045 36.000 0.00 0.00 0.00 4.20
2388 4605 8.996651 TTTTTCCTTCCTAATCTAATCATCCC 57.003 34.615 0.00 0.00 0.00 3.85
2396 4613 9.309224 CCCTTTTTCTTTTTCCTTCCTAATCTA 57.691 33.333 0.00 0.00 0.00 1.98
2397 4614 8.010697 TCCCTTTTTCTTTTTCCTTCCTAATCT 58.989 33.333 0.00 0.00 0.00 2.40
2398 4615 8.088981 GTCCCTTTTTCTTTTTCCTTCCTAATC 58.911 37.037 0.00 0.00 0.00 1.75
2400 4617 6.898521 TGTCCCTTTTTCTTTTTCCTTCCTAA 59.101 34.615 0.00 0.00 0.00 2.69
2401 4618 6.436890 TGTCCCTTTTTCTTTTTCCTTCCTA 58.563 36.000 0.00 0.00 0.00 2.94
2402 4619 5.277250 TGTCCCTTTTTCTTTTTCCTTCCT 58.723 37.500 0.00 0.00 0.00 3.36
2403 4620 5.607939 TGTCCCTTTTTCTTTTTCCTTCC 57.392 39.130 0.00 0.00 0.00 3.46
2404 4621 7.272244 TGATTGTCCCTTTTTCTTTTTCCTTC 58.728 34.615 0.00 0.00 0.00 3.46
2405 4622 7.194112 TGATTGTCCCTTTTTCTTTTTCCTT 57.806 32.000 0.00 0.00 0.00 3.36
2406 4623 6.806668 TGATTGTCCCTTTTTCTTTTTCCT 57.193 33.333 0.00 0.00 0.00 3.36
2407 4624 8.585018 TCTATGATTGTCCCTTTTTCTTTTTCC 58.415 33.333 0.00 0.00 0.00 3.13
2408 4625 9.631452 CTCTATGATTGTCCCTTTTTCTTTTTC 57.369 33.333 0.00 0.00 0.00 2.29
2409 4626 9.147732 ACTCTATGATTGTCCCTTTTTCTTTTT 57.852 29.630 0.00 0.00 0.00 1.94
2410 4627 8.579863 CACTCTATGATTGTCCCTTTTTCTTTT 58.420 33.333 0.00 0.00 0.00 2.27
2411 4628 7.944554 TCACTCTATGATTGTCCCTTTTTCTTT 59.055 33.333 0.00 0.00 29.99 2.52
2413 4630 7.020827 TCACTCTATGATTGTCCCTTTTTCT 57.979 36.000 0.00 0.00 29.99 2.52
2414 4631 7.391833 ACTTCACTCTATGATTGTCCCTTTTTC 59.608 37.037 0.00 0.00 37.11 2.29
2417 4634 6.176183 CACTTCACTCTATGATTGTCCCTTT 58.824 40.000 0.00 0.00 37.11 3.11
2420 4637 4.446371 CCACTTCACTCTATGATTGTCCC 58.554 47.826 0.00 0.00 37.11 4.46
2422 4639 5.105146 ACTCCCACTTCACTCTATGATTGTC 60.105 44.000 0.00 0.00 37.11 3.18
2423 4640 4.780021 ACTCCCACTTCACTCTATGATTGT 59.220 41.667 0.00 0.00 37.11 2.71
2425 4642 5.067936 CGTACTCCCACTTCACTCTATGATT 59.932 44.000 0.00 0.00 37.11 2.57
2426 4643 4.580995 CGTACTCCCACTTCACTCTATGAT 59.419 45.833 0.00 0.00 37.11 2.45
2427 4644 3.945921 CGTACTCCCACTTCACTCTATGA 59.054 47.826 0.00 0.00 34.65 2.15
2428 4645 3.066900 CCGTACTCCCACTTCACTCTATG 59.933 52.174 0.00 0.00 0.00 2.23
2429 4646 3.053842 TCCGTACTCCCACTTCACTCTAT 60.054 47.826 0.00 0.00 0.00 1.98
2430 4647 2.306805 TCCGTACTCCCACTTCACTCTA 59.693 50.000 0.00 0.00 0.00 2.43
2431 4648 1.075050 TCCGTACTCCCACTTCACTCT 59.925 52.381 0.00 0.00 0.00 3.24
2433 4650 1.825474 CATCCGTACTCCCACTTCACT 59.175 52.381 0.00 0.00 0.00 3.41
2435 4652 1.191535 CCATCCGTACTCCCACTTCA 58.808 55.000 0.00 0.00 0.00 3.02
2437 4654 1.831736 CTTCCATCCGTACTCCCACTT 59.168 52.381 0.00 0.00 0.00 3.16
2438 4655 1.486211 CTTCCATCCGTACTCCCACT 58.514 55.000 0.00 0.00 0.00 4.00
2439 4656 0.179081 GCTTCCATCCGTACTCCCAC 60.179 60.000 0.00 0.00 0.00 4.61
2440 4657 0.616395 TGCTTCCATCCGTACTCCCA 60.616 55.000 0.00 0.00 0.00 4.37
2441 4658 0.759346 ATGCTTCCATCCGTACTCCC 59.241 55.000 0.00 0.00 0.00 4.30
2442 4659 1.541233 CCATGCTTCCATCCGTACTCC 60.541 57.143 0.00 0.00 0.00 3.85
2443 4660 1.541233 CCCATGCTTCCATCCGTACTC 60.541 57.143 0.00 0.00 0.00 2.59
2444 4661 0.469917 CCCATGCTTCCATCCGTACT 59.530 55.000 0.00 0.00 0.00 2.73
2445 4662 0.535102 CCCCATGCTTCCATCCGTAC 60.535 60.000 0.00 0.00 0.00 3.67
2446 4663 0.692756 TCCCCATGCTTCCATCCGTA 60.693 55.000 0.00 0.00 0.00 4.02
2448 5234 1.228063 CTCCCCATGCTTCCATCCG 60.228 63.158 0.00 0.00 0.00 4.18
2455 5241 2.614969 TGCTCCCTCCCCATGCTT 60.615 61.111 0.00 0.00 0.00 3.91
2456 5242 3.095163 CTGCTCCCTCCCCATGCT 61.095 66.667 0.00 0.00 0.00 3.79
2458 5244 1.565390 TTGTCTGCTCCCTCCCCATG 61.565 60.000 0.00 0.00 0.00 3.66
2459 5245 1.229951 TTGTCTGCTCCCTCCCCAT 60.230 57.895 0.00 0.00 0.00 4.00
2462 5248 2.270527 GCTTGTCTGCTCCCTCCC 59.729 66.667 0.00 0.00 0.00 4.30
2466 5252 1.078143 ATTCGGCTTGTCTGCTCCC 60.078 57.895 0.00 0.00 0.00 4.30
2471 5257 0.745845 CCCTGGATTCGGCTTGTCTG 60.746 60.000 0.00 0.00 0.00 3.51
2474 5260 1.002134 CACCCTGGATTCGGCTTGT 60.002 57.895 0.00 0.00 0.00 3.16
2475 5261 2.409870 GCACCCTGGATTCGGCTTG 61.410 63.158 0.00 0.00 0.00 4.01
2476 5262 2.044946 GCACCCTGGATTCGGCTT 60.045 61.111 0.00 0.00 0.00 4.35
2477 5263 4.473520 CGCACCCTGGATTCGGCT 62.474 66.667 0.00 0.00 0.00 5.52
2478 5264 4.467084 TCGCACCCTGGATTCGGC 62.467 66.667 0.00 0.00 0.00 5.54
2479 5265 2.202932 CTCGCACCCTGGATTCGG 60.203 66.667 0.00 0.00 0.00 4.30
2480 5266 2.892425 GCTCGCACCCTGGATTCG 60.892 66.667 0.00 0.00 0.00 3.34
2481 5267 1.153086 ATGCTCGCACCCTGGATTC 60.153 57.895 0.00 0.00 0.00 2.52
2482 5268 1.452651 CATGCTCGCACCCTGGATT 60.453 57.895 0.00 0.00 0.00 3.01
2483 5269 2.191375 CATGCTCGCACCCTGGAT 59.809 61.111 0.00 0.00 0.00 3.41
2484 5270 4.783621 GCATGCTCGCACCCTGGA 62.784 66.667 11.37 0.00 0.00 3.86
2493 5279 4.794439 TCCACGACGGCATGCTCG 62.794 66.667 23.19 23.19 35.96 5.03
2494 5280 1.815421 ATTCCACGACGGCATGCTC 60.815 57.895 18.92 7.30 33.14 4.26
2495 5281 2.108514 CATTCCACGACGGCATGCT 61.109 57.895 18.92 0.00 31.30 3.79
2496 5282 2.106074 TCATTCCACGACGGCATGC 61.106 57.895 9.90 9.90 38.22 4.06
2498 5284 4.201951 GTCATTCCACGACGGCAT 57.798 55.556 0.00 0.00 33.14 4.40
2503 5289 1.790838 CGTCTCTCGTCATTCCACGAC 60.791 57.143 0.00 0.00 43.79 4.34
2504 5290 0.446616 CGTCTCTCGTCATTCCACGA 59.553 55.000 0.00 0.00 46.42 4.35
2505 5291 2.931536 CGTCTCTCGTCATTCCACG 58.068 57.895 0.00 0.00 41.36 4.94
2523 5309 2.912771 TCGAGATCAGAGTCAGAGGAC 58.087 52.381 0.00 0.00 44.66 3.85
2524 5310 3.855255 ATCGAGATCAGAGTCAGAGGA 57.145 47.619 0.00 0.00 0.00 3.71
2525 5311 4.580167 AGAAATCGAGATCAGAGTCAGAGG 59.420 45.833 0.00 0.00 0.00 3.69
2526 5312 5.756195 AGAAATCGAGATCAGAGTCAGAG 57.244 43.478 0.00 0.00 0.00 3.35
2527 5313 6.353323 AGTAGAAATCGAGATCAGAGTCAGA 58.647 40.000 0.00 0.00 0.00 3.27
2529 5315 5.529430 GGAGTAGAAATCGAGATCAGAGTCA 59.471 44.000 0.00 0.00 0.00 3.41
2531 5317 4.513692 CGGAGTAGAAATCGAGATCAGAGT 59.486 45.833 0.00 0.00 0.00 3.24
2533 5319 4.704965 TCGGAGTAGAAATCGAGATCAGA 58.295 43.478 0.00 0.00 0.00 3.27
2534 5320 5.621197 ATCGGAGTAGAAATCGAGATCAG 57.379 43.478 0.00 0.00 35.07 2.90
2536 5322 7.753659 TCATTATCGGAGTAGAAATCGAGATC 58.246 38.462 0.00 0.00 35.07 2.75
2537 5323 7.689446 TCATTATCGGAGTAGAAATCGAGAT 57.311 36.000 0.00 0.00 35.07 2.75
2539 5325 7.217258 CGAATCATTATCGGAGTAGAAATCGAG 59.783 40.741 0.00 0.00 36.68 4.04
2541 5327 7.021790 TCGAATCATTATCGGAGTAGAAATCG 58.978 38.462 0.00 0.00 40.59 3.34
2542 5328 8.802856 CATCGAATCATTATCGGAGTAGAAATC 58.197 37.037 0.00 0.00 40.59 2.17
2543 5329 8.523658 TCATCGAATCATTATCGGAGTAGAAAT 58.476 33.333 0.00 0.00 40.59 2.17
2544 5330 7.882179 TCATCGAATCATTATCGGAGTAGAAA 58.118 34.615 0.00 0.00 40.59 2.52
2546 5332 6.094186 CCTCATCGAATCATTATCGGAGTAGA 59.906 42.308 0.00 0.00 40.59 2.59
2547 5333 6.094186 TCCTCATCGAATCATTATCGGAGTAG 59.906 42.308 0.00 0.00 40.59 2.57
2550 5336 5.105957 ACTCCTCATCGAATCATTATCGGAG 60.106 44.000 0.00 0.00 40.59 4.63
2551 5337 4.767409 ACTCCTCATCGAATCATTATCGGA 59.233 41.667 0.00 0.00 40.59 4.55
2552 5338 4.861462 CACTCCTCATCGAATCATTATCGG 59.139 45.833 0.00 0.00 40.59 4.18
2553 5339 5.703876 TCACTCCTCATCGAATCATTATCG 58.296 41.667 0.00 0.00 41.53 2.92
2554 5340 6.088749 CGTTCACTCCTCATCGAATCATTATC 59.911 42.308 0.00 0.00 0.00 1.75
2555 5341 5.923114 CGTTCACTCCTCATCGAATCATTAT 59.077 40.000 0.00 0.00 0.00 1.28
2556 5342 5.163550 ACGTTCACTCCTCATCGAATCATTA 60.164 40.000 0.00 0.00 0.00 1.90
2557 5343 4.115516 CGTTCACTCCTCATCGAATCATT 58.884 43.478 0.00 0.00 0.00 2.57
2558 5344 3.131223 ACGTTCACTCCTCATCGAATCAT 59.869 43.478 0.00 0.00 0.00 2.45
2560 5346 3.152261 ACGTTCACTCCTCATCGAATC 57.848 47.619 0.00 0.00 0.00 2.52
2561 5347 3.056821 TCAACGTTCACTCCTCATCGAAT 60.057 43.478 0.00 0.00 0.00 3.34
2563 5349 1.883926 TCAACGTTCACTCCTCATCGA 59.116 47.619 0.00 0.00 0.00 3.59
2564 5350 2.347697 TCAACGTTCACTCCTCATCG 57.652 50.000 0.00 0.00 0.00 3.84
2565 5351 3.862267 CAGATCAACGTTCACTCCTCATC 59.138 47.826 0.00 0.00 0.00 2.92
2566 5352 3.368843 CCAGATCAACGTTCACTCCTCAT 60.369 47.826 0.00 0.00 0.00 2.90
2567 5353 2.029020 CCAGATCAACGTTCACTCCTCA 60.029 50.000 0.00 0.00 0.00 3.86
2568 5354 2.611518 CCAGATCAACGTTCACTCCTC 58.388 52.381 0.00 0.00 0.00 3.71
2569 5355 1.338200 GCCAGATCAACGTTCACTCCT 60.338 52.381 0.00 0.00 0.00 3.69
2570 5356 1.079503 GCCAGATCAACGTTCACTCC 58.920 55.000 0.00 0.00 0.00 3.85
2571 5357 2.086054 AGCCAGATCAACGTTCACTC 57.914 50.000 0.00 0.00 0.00 3.51
2573 5359 3.555518 GAAAAGCCAGATCAACGTTCAC 58.444 45.455 0.00 0.00 0.00 3.18
2574 5360 2.552315 GGAAAAGCCAGATCAACGTTCA 59.448 45.455 0.00 0.00 36.34 3.18
2575 5361 2.095212 GGGAAAAGCCAGATCAACGTTC 60.095 50.000 0.00 0.00 38.95 3.95
2577 5363 1.534729 GGGAAAAGCCAGATCAACGT 58.465 50.000 0.00 0.00 38.95 3.99
2578 5364 0.447801 CGGGAAAAGCCAGATCAACG 59.552 55.000 0.00 0.00 38.95 4.10
2581 5367 0.404040 AACCGGGAAAAGCCAGATCA 59.596 50.000 6.32 0.00 38.95 2.92
2584 5370 0.183971 TCAAACCGGGAAAAGCCAGA 59.816 50.000 6.32 0.00 38.95 3.86
2586 5372 0.825840 CCTCAAACCGGGAAAAGCCA 60.826 55.000 6.32 0.00 38.95 4.75
2587 5373 0.538746 TCCTCAAACCGGGAAAAGCC 60.539 55.000 6.32 0.00 0.00 4.35
2588 5374 1.545841 ATCCTCAAACCGGGAAAAGC 58.454 50.000 6.32 0.00 35.08 3.51
2589 5375 4.765339 AGTAAATCCTCAAACCGGGAAAAG 59.235 41.667 6.32 0.00 35.08 2.27
2590 5376 4.521256 CAGTAAATCCTCAAACCGGGAAAA 59.479 41.667 6.32 0.00 35.08 2.29
2591 5377 4.076394 CAGTAAATCCTCAAACCGGGAAA 58.924 43.478 6.32 0.00 35.08 3.13
2593 5379 2.640826 ACAGTAAATCCTCAAACCGGGA 59.359 45.455 6.32 0.00 35.96 5.14
2594 5380 3.007635 GACAGTAAATCCTCAAACCGGG 58.992 50.000 6.32 0.00 0.00 5.73
2595 5381 3.007635 GGACAGTAAATCCTCAAACCGG 58.992 50.000 0.00 0.00 33.03 5.28
2596 5382 3.007635 GGGACAGTAAATCCTCAAACCG 58.992 50.000 0.00 0.00 36.40 4.44
2624 5622 6.825610 TCTAAAGCACCAACCAAATTGATTT 58.174 32.000 0.00 0.00 41.23 2.17
2665 5663 1.095807 GCCCGCTCCAATCCTTGTAC 61.096 60.000 0.00 0.00 0.00 2.90
2668 5666 0.533755 CTAGCCCGCTCCAATCCTTG 60.534 60.000 0.00 0.00 0.00 3.61
2672 5670 1.889573 GTGCTAGCCCGCTCCAATC 60.890 63.158 13.29 0.00 0.00 2.67
2685 5683 2.794631 CGTGCAGATACATCACGTGCTA 60.795 50.000 11.67 0.03 45.75 3.49
2686 5684 1.645034 GTGCAGATACATCACGTGCT 58.355 50.000 11.67 0.00 35.11 4.40
2691 5689 0.652592 GCACCGTGCAGATACATCAC 59.347 55.000 18.79 0.00 44.26 3.06
2692 5690 3.064079 GCACCGTGCAGATACATCA 57.936 52.632 18.79 0.00 44.26 3.07
2711 5709 8.157476 ACTTCTTTTCACAGGAAGCTTATAGAA 58.843 33.333 0.00 0.00 39.77 2.10
2712 5710 7.680730 ACTTCTTTTCACAGGAAGCTTATAGA 58.319 34.615 0.00 0.00 39.77 1.98
2714 5712 7.174946 CCAACTTCTTTTCACAGGAAGCTTATA 59.825 37.037 0.00 0.00 39.77 0.98
2722 5720 3.297134 AGCCAACTTCTTTTCACAGGA 57.703 42.857 0.00 0.00 0.00 3.86
2737 5735 5.335583 CGGTATCAAATGACTCAAAAGCCAA 60.336 40.000 0.00 0.00 0.00 4.52
2769 5767 3.951775 TGGCATACCACATCCAAAAAC 57.048 42.857 0.00 0.00 42.67 2.43
2781 5779 5.391312 AAAAAGAACTCACATGGCATACC 57.609 39.130 0.00 0.00 0.00 2.73
2798 5796 7.510630 CAACGGTCATCTAGTGAGTTAAAAAG 58.489 38.462 0.00 0.00 37.56 2.27
2808 5806 1.269166 GACGCAACGGTCATCTAGTG 58.731 55.000 0.00 0.00 36.91 2.74
2823 5821 3.521560 TGATCTCTACACCAATTGACGC 58.478 45.455 7.12 0.00 0.00 5.19
2825 5823 6.621596 GCAGTTTGATCTCTACACCAATTGAC 60.622 42.308 7.12 0.00 0.00 3.18
2826 5824 5.412594 GCAGTTTGATCTCTACACCAATTGA 59.587 40.000 7.12 0.00 0.00 2.57
2834 5832 4.318332 CAGGTTGCAGTTTGATCTCTACA 58.682 43.478 0.00 0.00 0.00 2.74
2835 5833 3.686726 CCAGGTTGCAGTTTGATCTCTAC 59.313 47.826 0.00 0.00 0.00 2.59
2838 5836 2.783135 TCCAGGTTGCAGTTTGATCTC 58.217 47.619 0.00 0.00 0.00 2.75
2855 5853 7.067615 TGTTTCACATAGTTTGCTTAACTTCCA 59.932 33.333 9.53 0.00 44.73 3.53
2856 5854 7.422399 TGTTTCACATAGTTTGCTTAACTTCC 58.578 34.615 9.53 0.00 44.73 3.46
2857 5855 8.850454 TTGTTTCACATAGTTTGCTTAACTTC 57.150 30.769 9.53 0.00 44.73 3.01
2908 5906 3.361348 GCAGTTCGTTAGTTCGTCTCTTC 59.639 47.826 0.00 0.00 0.00 2.87
2923 5921 5.177511 TCACTTAATTCTGAGTTGCAGTTCG 59.822 40.000 0.00 0.00 45.14 3.95
2924 5922 6.545504 TCACTTAATTCTGAGTTGCAGTTC 57.454 37.500 0.00 0.00 45.14 3.01
2925 5923 6.543831 AGTTCACTTAATTCTGAGTTGCAGTT 59.456 34.615 0.00 0.00 45.14 3.16
2926 5924 6.058183 AGTTCACTTAATTCTGAGTTGCAGT 58.942 36.000 0.00 0.00 45.14 4.40
2927 5925 6.551385 AGTTCACTTAATTCTGAGTTGCAG 57.449 37.500 0.00 0.00 46.31 4.41
2928 5926 8.621532 AATAGTTCACTTAATTCTGAGTTGCA 57.378 30.769 0.00 0.00 0.00 4.08
2929 5927 9.334693 CAAATAGTTCACTTAATTCTGAGTTGC 57.665 33.333 0.00 0.00 0.00 4.17
2970 5968 9.342308 TGATCTCTTCAAACAGTTCACTTAATT 57.658 29.630 0.00 0.00 0.00 1.40
2971 5969 8.908786 TGATCTCTTCAAACAGTTCACTTAAT 57.091 30.769 0.00 0.00 0.00 1.40
2972 5970 8.612619 GTTGATCTCTTCAAACAGTTCACTTAA 58.387 33.333 0.00 0.00 45.71 1.85
2973 5971 7.987458 AGTTGATCTCTTCAAACAGTTCACTTA 59.013 33.333 0.00 0.00 45.71 2.24
2974 5972 6.825721 AGTTGATCTCTTCAAACAGTTCACTT 59.174 34.615 0.00 0.00 45.71 3.16
2975 5973 6.352516 AGTTGATCTCTTCAAACAGTTCACT 58.647 36.000 0.00 0.00 45.71 3.41
2976 5974 6.610741 AGTTGATCTCTTCAAACAGTTCAC 57.389 37.500 0.00 0.00 45.71 3.18
2977 5975 7.272244 TGTAGTTGATCTCTTCAAACAGTTCA 58.728 34.615 0.00 0.00 45.71 3.18
2978 5976 7.715265 TGTAGTTGATCTCTTCAAACAGTTC 57.285 36.000 0.00 0.00 45.71 3.01
2979 5977 7.389053 GGATGTAGTTGATCTCTTCAAACAGTT 59.611 37.037 0.00 0.00 45.71 3.16
2980 5978 6.876257 GGATGTAGTTGATCTCTTCAAACAGT 59.124 38.462 0.00 0.00 45.71 3.55
2981 5979 6.875726 TGGATGTAGTTGATCTCTTCAAACAG 59.124 38.462 0.00 0.00 45.71 3.16
2982 5980 6.768483 TGGATGTAGTTGATCTCTTCAAACA 58.232 36.000 0.00 0.00 45.71 2.83
2983 5981 7.856145 ATGGATGTAGTTGATCTCTTCAAAC 57.144 36.000 0.00 0.00 45.71 2.93
2994 5992 9.571816 TGCATTGATAATAATGGATGTAGTTGA 57.428 29.630 0.00 0.00 38.25 3.18
2997 5995 9.970553 AGATGCATTGATAATAATGGATGTAGT 57.029 29.630 0.00 0.00 45.33 2.73
3000 5998 8.957466 CAGAGATGCATTGATAATAATGGATGT 58.043 33.333 0.00 6.33 45.33 3.06
3001 5999 8.957466 ACAGAGATGCATTGATAATAATGGATG 58.043 33.333 0.00 1.36 45.33 3.51
3003 6001 8.929260 AACAGAGATGCATTGATAATAATGGA 57.071 30.769 0.00 0.00 41.56 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.