Multiple sequence alignment - TraesCS5B01G147500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G147500 chr5B 100.000 2559 0 0 1 2559 275503171 275505729 0.000000e+00 4726.0
1 TraesCS5B01G147500 chr5D 92.819 1295 52 17 604 1879 230043634 230042362 0.000000e+00 1838.0
2 TraesCS5B01G147500 chr5D 88.361 421 35 6 2127 2535 230042372 230041954 6.360000e-136 494.0
3 TraesCS5B01G147500 chr5D 90.052 191 16 3 2 190 230044066 230043877 7.070000e-61 244.0
4 TraesCS5B01G147500 chr5D 82.731 249 25 10 236 476 230043875 230043637 3.340000e-49 206.0
5 TraesCS5B01G147500 chr5A 92.214 1310 53 22 604 1879 326649490 326650784 0.000000e+00 1808.0
6 TraesCS5B01G147500 chr5A 88.454 485 31 8 1 476 326649019 326649487 1.720000e-156 562.0
7 TraesCS5B01G147500 chr5A 88.453 433 37 6 2127 2558 326650773 326651193 6.320000e-141 510.0
8 TraesCS5B01G147500 chr5A 98.374 123 2 0 482 604 655994061 655993939 1.540000e-52 217.0
9 TraesCS5B01G147500 chr5A 94.737 133 6 1 474 606 427320023 427319892 3.340000e-49 206.0
10 TraesCS5B01G147500 chr7B 90.283 247 23 1 1881 2126 432940690 432940936 3.180000e-84 322.0
11 TraesCS5B01G147500 chr7B 94.697 132 7 0 472 603 505938659 505938528 3.340000e-49 206.0
12 TraesCS5B01G147500 chr4A 86.747 249 32 1 1880 2127 16436420 16436172 2.510000e-70 276.0
13 TraesCS5B01G147500 chr6B 86.290 248 33 1 1880 2126 698408516 698408269 4.200000e-68 268.0
14 TraesCS5B01G147500 chr6B 97.600 125 3 0 482 606 644577286 644577162 5.550000e-52 215.0
15 TraesCS5B01G147500 chr6B 92.308 143 9 2 470 611 18270498 18270639 4.320000e-48 202.0
16 TraesCS5B01G147500 chr3A 86.345 249 31 3 1880 2126 21802042 21801795 4.200000e-68 268.0
17 TraesCS5B01G147500 chr3A 100.000 28 0 0 2080 2107 614746335 614746362 5.000000e-03 52.8
18 TraesCS5B01G147500 chr1B 89.151 212 22 1 1880 2090 413981072 413980861 1.950000e-66 263.0
19 TraesCS5B01G147500 chr1B 96.875 128 4 0 479 606 286319952 286320079 5.550000e-52 215.0
20 TraesCS5B01G147500 chr1B 94.161 137 7 1 469 604 601258834 601258970 9.280000e-50 207.0
21 TraesCS5B01G147500 chr7A 84.884 258 34 4 1880 2134 671706603 671706858 3.270000e-64 255.0
22 TraesCS5B01G147500 chr7A 94.161 137 6 2 468 603 202726066 202725931 9.280000e-50 207.0
23 TraesCS5B01G147500 chr4B 85.200 250 34 3 1880 2127 652396701 652396453 1.180000e-63 254.0
24 TraesCS5B01G147500 chr1D 85.259 251 32 4 1880 2126 493034380 493034629 1.180000e-63 254.0
25 TraesCS5B01G147500 chr1D 84.800 250 35 3 1880 2126 85195071 85195320 5.470000e-62 248.0
26 TraesCS5B01G147500 chr3B 97.561 123 3 0 482 604 797463993 797463871 7.170000e-51 211.0
27 TraesCS5B01G147500 chr2A 97.436 39 1 0 2520 2558 775082694 775082732 1.640000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G147500 chr5B 275503171 275505729 2558 False 4726.0 4726 100.00000 1 2559 1 chr5B.!!$F1 2558
1 TraesCS5B01G147500 chr5D 230041954 230044066 2112 True 695.5 1838 88.49075 2 2535 4 chr5D.!!$R1 2533
2 TraesCS5B01G147500 chr5A 326649019 326651193 2174 False 960.0 1808 89.70700 1 2558 3 chr5A.!!$F1 2557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 615 0.033796 TTCGGACGGAGGGAGTATGT 60.034 55.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2176 0.035739 TAGGCCGGCGGGAAAATATC 59.964 55.0 29.48 7.8 34.06 1.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.337260 TGCTTGAGTCTTCTTCGCCTC 60.337 52.381 0.00 0.00 0.00 4.70
56 57 0.243907 CTTCGCCTCGGTCTTCTTGA 59.756 55.000 0.00 0.00 0.00 3.02
110 113 1.063567 ACGCTCTCAGATAGGGGAGTT 60.064 52.381 5.06 0.00 32.93 3.01
118 121 3.906218 TCAGATAGGGGAGTTGGATGATG 59.094 47.826 0.00 0.00 0.00 3.07
168 171 0.970937 ATCCGAAGTGGGCTTCTCGA 60.971 55.000 5.91 0.00 46.65 4.04
199 202 4.109766 CCAACATAAATGCGAGTAGACGA 58.890 43.478 0.00 0.00 35.09 4.20
225 228 1.432270 GGTGATAGCGGCTTCAGTGC 61.432 60.000 8.26 0.98 0.00 4.40
227 230 0.460811 TGATAGCGGCTTCAGTGCTG 60.461 55.000 8.26 0.00 39.73 4.41
228 231 1.153289 ATAGCGGCTTCAGTGCTGG 60.153 57.895 8.26 0.00 39.73 4.85
229 232 2.599645 ATAGCGGCTTCAGTGCTGGG 62.600 60.000 8.26 0.00 39.73 4.45
295 298 1.748493 GTTGTTGGAAGTTGGCAGACA 59.252 47.619 0.00 0.00 0.00 3.41
319 323 3.863606 CTCCTAAGAGCTCCCCGG 58.136 66.667 10.93 8.27 32.13 5.73
325 329 1.278127 CTAAGAGCTCCCCGGTTTTGA 59.722 52.381 10.93 0.00 0.00 2.69
350 360 5.066505 GCCGACATAGAGGATTTCAAACATT 59.933 40.000 0.00 0.00 0.00 2.71
360 370 6.784031 AGGATTTCAAACATTAGTCTGGTCT 58.216 36.000 0.00 0.00 0.00 3.85
399 409 5.050431 CGTTGAAGGCCTAAAAATGTTTTGG 60.050 40.000 5.16 4.60 41.12 3.28
402 412 5.129485 TGAAGGCCTAAAAATGTTTTGGACA 59.871 36.000 16.01 6.08 46.72 4.02
415 425 8.735692 AATGTTTTGGACAGTTCATTTCAAAT 57.264 26.923 0.00 0.00 42.62 2.32
424 434 9.788960 GGACAGTTCATTTCAAATATTTAGGAC 57.211 33.333 0.00 0.00 0.00 3.85
437 447 9.252962 CAAATATTTAGGACAATTTGATGAGCC 57.747 33.333 2.79 0.00 40.24 4.70
441 451 0.447801 GACAATTTGATGAGCCGCGT 59.552 50.000 4.92 0.00 0.00 6.01
442 452 0.881118 ACAATTTGATGAGCCGCGTT 59.119 45.000 4.92 0.00 0.00 4.84
443 453 1.261989 CAATTTGATGAGCCGCGTTG 58.738 50.000 4.92 0.00 0.00 4.10
444 454 1.135717 CAATTTGATGAGCCGCGTTGA 60.136 47.619 4.92 0.00 0.00 3.18
445 455 1.164411 ATTTGATGAGCCGCGTTGAA 58.836 45.000 4.92 0.00 0.00 2.69
465 475 5.933617 TGAAGATGTCATATTGGGAAGAGG 58.066 41.667 0.00 0.00 0.00 3.69
466 476 5.667172 TGAAGATGTCATATTGGGAAGAGGA 59.333 40.000 0.00 0.00 0.00 3.71
467 477 5.822132 AGATGTCATATTGGGAAGAGGAG 57.178 43.478 0.00 0.00 0.00 3.69
468 478 5.222870 AGATGTCATATTGGGAAGAGGAGT 58.777 41.667 0.00 0.00 0.00 3.85
469 479 5.669447 AGATGTCATATTGGGAAGAGGAGTT 59.331 40.000 0.00 0.00 0.00 3.01
470 480 5.359194 TGTCATATTGGGAAGAGGAGTTC 57.641 43.478 0.00 0.00 0.00 3.01
473 483 4.782691 TCATATTGGGAAGAGGAGTTCACA 59.217 41.667 0.00 0.00 38.10 3.58
475 485 2.930826 TGGGAAGAGGAGTTCACAAC 57.069 50.000 0.00 0.00 36.90 3.32
476 486 2.408565 TGGGAAGAGGAGTTCACAACT 58.591 47.619 0.00 0.00 46.38 3.16
477 487 2.104792 TGGGAAGAGGAGTTCACAACTG 59.895 50.000 0.00 0.00 43.03 3.16
483 493 2.262423 GGAGTTCACAACTGCTTCCT 57.738 50.000 0.99 0.00 45.24 3.36
484 494 2.147150 GGAGTTCACAACTGCTTCCTC 58.853 52.381 0.99 0.00 45.24 3.71
485 495 2.224402 GGAGTTCACAACTGCTTCCTCT 60.224 50.000 0.99 0.00 45.24 3.69
486 496 2.805099 GAGTTCACAACTGCTTCCTCTG 59.195 50.000 0.00 0.00 43.03 3.35
487 497 2.171448 AGTTCACAACTGCTTCCTCTGT 59.829 45.455 0.00 0.00 41.01 3.41
488 498 2.533266 TCACAACTGCTTCCTCTGTC 57.467 50.000 0.00 0.00 0.00 3.51
489 499 1.070758 TCACAACTGCTTCCTCTGTCC 59.929 52.381 0.00 0.00 0.00 4.02
490 500 0.034059 ACAACTGCTTCCTCTGTCCG 59.966 55.000 0.00 0.00 0.00 4.79
491 501 0.671781 CAACTGCTTCCTCTGTCCGG 60.672 60.000 0.00 0.00 0.00 5.14
492 502 0.832135 AACTGCTTCCTCTGTCCGGA 60.832 55.000 0.00 0.00 0.00 5.14
493 503 0.832135 ACTGCTTCCTCTGTCCGGAA 60.832 55.000 5.23 0.00 38.18 4.30
494 504 0.321671 CTGCTTCCTCTGTCCGGAAA 59.678 55.000 5.23 0.00 39.86 3.13
495 505 0.984230 TGCTTCCTCTGTCCGGAAAT 59.016 50.000 5.23 0.00 39.86 2.17
496 506 2.168521 CTGCTTCCTCTGTCCGGAAATA 59.831 50.000 5.23 0.00 39.86 1.40
497 507 2.093658 TGCTTCCTCTGTCCGGAAATAC 60.094 50.000 5.23 0.00 39.86 1.89
498 508 2.168728 GCTTCCTCTGTCCGGAAATACT 59.831 50.000 5.23 0.00 39.86 2.12
499 509 3.369576 GCTTCCTCTGTCCGGAAATACTT 60.370 47.826 5.23 0.00 39.86 2.24
500 510 3.887621 TCCTCTGTCCGGAAATACTTG 57.112 47.619 5.23 0.00 0.00 3.16
501 511 3.170717 TCCTCTGTCCGGAAATACTTGT 58.829 45.455 5.23 0.00 0.00 3.16
502 512 3.194968 TCCTCTGTCCGGAAATACTTGTC 59.805 47.826 5.23 0.00 0.00 3.18
503 513 3.056107 CCTCTGTCCGGAAATACTTGTCA 60.056 47.826 5.23 0.00 0.00 3.58
504 514 4.383118 CCTCTGTCCGGAAATACTTGTCAT 60.383 45.833 5.23 0.00 0.00 3.06
505 515 4.755411 TCTGTCCGGAAATACTTGTCATC 58.245 43.478 5.23 0.00 0.00 2.92
506 516 4.221924 TCTGTCCGGAAATACTTGTCATCA 59.778 41.667 5.23 0.00 0.00 3.07
507 517 4.900684 TGTCCGGAAATACTTGTCATCAA 58.099 39.130 5.23 0.00 0.00 2.57
508 518 5.309638 TGTCCGGAAATACTTGTCATCAAA 58.690 37.500 5.23 0.00 32.87 2.69
509 519 5.765677 TGTCCGGAAATACTTGTCATCAAAA 59.234 36.000 5.23 0.00 32.87 2.44
510 520 6.432783 TGTCCGGAAATACTTGTCATCAAAAT 59.567 34.615 5.23 0.00 32.87 1.82
511 521 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
512 522 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
513 523 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
514 524 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
567 577 7.787028 AGTTCTAGATACATCCTCTTTTGTCC 58.213 38.462 0.00 0.00 0.00 4.02
568 578 7.400339 AGTTCTAGATACATCCTCTTTTGTCCA 59.600 37.037 0.00 0.00 0.00 4.02
569 579 7.921041 TCTAGATACATCCTCTTTTGTCCAT 57.079 36.000 0.00 0.00 0.00 3.41
570 580 8.324191 TCTAGATACATCCTCTTTTGTCCATT 57.676 34.615 0.00 0.00 0.00 3.16
571 581 8.772250 TCTAGATACATCCTCTTTTGTCCATTT 58.228 33.333 0.00 0.00 0.00 2.32
572 582 9.401058 CTAGATACATCCTCTTTTGTCCATTTT 57.599 33.333 0.00 0.00 0.00 1.82
573 583 8.059798 AGATACATCCTCTTTTGTCCATTTTG 57.940 34.615 0.00 0.00 0.00 2.44
574 584 7.890127 AGATACATCCTCTTTTGTCCATTTTGA 59.110 33.333 0.00 0.00 0.00 2.69
575 585 6.923199 ACATCCTCTTTTGTCCATTTTGAT 57.077 33.333 0.00 0.00 0.00 2.57
576 586 6.694447 ACATCCTCTTTTGTCCATTTTGATG 58.306 36.000 0.00 0.00 33.80 3.07
577 587 6.494491 ACATCCTCTTTTGTCCATTTTGATGA 59.506 34.615 0.00 0.00 32.39 2.92
578 588 6.331369 TCCTCTTTTGTCCATTTTGATGAC 57.669 37.500 0.00 0.00 0.00 3.06
579 589 5.832595 TCCTCTTTTGTCCATTTTGATGACA 59.167 36.000 0.00 0.00 0.00 3.58
580 590 6.323482 TCCTCTTTTGTCCATTTTGATGACAA 59.677 34.615 0.00 0.00 34.47 3.18
581 591 6.643770 CCTCTTTTGTCCATTTTGATGACAAG 59.356 38.462 0.00 0.00 37.13 3.16
582 592 7.111247 TCTTTTGTCCATTTTGATGACAAGT 57.889 32.000 0.00 0.00 37.13 3.16
583 593 8.231692 TCTTTTGTCCATTTTGATGACAAGTA 57.768 30.769 0.00 0.00 37.13 2.24
584 594 8.859090 TCTTTTGTCCATTTTGATGACAAGTAT 58.141 29.630 0.00 0.00 37.13 2.12
585 595 9.480053 CTTTTGTCCATTTTGATGACAAGTATT 57.520 29.630 0.00 0.00 37.13 1.89
586 596 9.829507 TTTTGTCCATTTTGATGACAAGTATTT 57.170 25.926 0.00 0.00 37.13 1.40
587 597 9.829507 TTTGTCCATTTTGATGACAAGTATTTT 57.170 25.926 0.00 0.00 37.13 1.82
588 598 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
589 599 7.807433 TGTCCATTTTGATGACAAGTATTTTCG 59.193 33.333 0.00 0.00 37.32 3.46
590 600 7.273381 GTCCATTTTGATGACAAGTATTTTCGG 59.727 37.037 0.00 0.00 37.32 4.30
591 601 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
592 602 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
593 603 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
594 604 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
595 605 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
596 606 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
597 607 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
598 608 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
599 609 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
600 610 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
601 611 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
602 612 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
603 613 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
604 614 1.108776 TTTCGGACGGAGGGAGTATG 58.891 55.000 0.00 0.00 0.00 2.39
605 615 0.033796 TTCGGACGGAGGGAGTATGT 60.034 55.000 0.00 0.00 0.00 2.29
606 616 0.750546 TCGGACGGAGGGAGTATGTG 60.751 60.000 0.00 0.00 0.00 3.21
607 617 0.750546 CGGACGGAGGGAGTATGTGA 60.751 60.000 0.00 0.00 0.00 3.58
608 618 1.705873 GGACGGAGGGAGTATGTGAT 58.294 55.000 0.00 0.00 0.00 3.06
609 619 2.040178 GGACGGAGGGAGTATGTGATT 58.960 52.381 0.00 0.00 0.00 2.57
610 620 3.228453 GGACGGAGGGAGTATGTGATTA 58.772 50.000 0.00 0.00 0.00 1.75
611 621 3.256136 GGACGGAGGGAGTATGTGATTAG 59.744 52.174 0.00 0.00 0.00 1.73
612 622 3.231818 ACGGAGGGAGTATGTGATTAGG 58.768 50.000 0.00 0.00 0.00 2.69
613 623 3.117246 ACGGAGGGAGTATGTGATTAGGA 60.117 47.826 0.00 0.00 0.00 2.94
633 643 1.168714 GCACCCTTAGCAGTGAAAGG 58.831 55.000 14.75 14.75 41.69 3.11
650 660 5.355910 GTGAAAGGTTGTCCAACTTGTCTAA 59.644 40.000 12.10 0.00 40.94 2.10
651 661 5.588648 TGAAAGGTTGTCCAACTTGTCTAAG 59.411 40.000 12.10 0.00 40.94 2.18
655 665 6.365520 AGGTTGTCCAACTTGTCTAAGAAAT 58.634 36.000 9.79 0.00 40.94 2.17
656 666 7.514721 AGGTTGTCCAACTTGTCTAAGAAATA 58.485 34.615 9.79 0.00 40.94 1.40
657 667 7.996644 AGGTTGTCCAACTTGTCTAAGAAATAA 59.003 33.333 9.79 0.00 40.94 1.40
658 668 8.074370 GGTTGTCCAACTTGTCTAAGAAATAAC 58.926 37.037 9.79 0.00 40.94 1.89
659 669 7.739498 TGTCCAACTTGTCTAAGAAATAACC 57.261 36.000 0.00 0.00 37.36 2.85
660 670 7.284074 TGTCCAACTTGTCTAAGAAATAACCA 58.716 34.615 0.00 0.00 37.36 3.67
661 671 7.444183 TGTCCAACTTGTCTAAGAAATAACCAG 59.556 37.037 0.00 0.00 37.36 4.00
662 672 7.444487 GTCCAACTTGTCTAAGAAATAACCAGT 59.556 37.037 0.00 0.00 37.36 4.00
712 723 8.863872 ATAACCAGTTTGTTAAAGCTATCACT 57.136 30.769 0.00 0.00 34.59 3.41
713 724 6.560253 ACCAGTTTGTTAAAGCTATCACTG 57.440 37.500 0.00 0.00 0.00 3.66
714 725 5.473504 ACCAGTTTGTTAAAGCTATCACTGG 59.526 40.000 17.23 17.23 44.53 4.00
802 817 3.878778 CAACCTGGATAAGAAGGACCTG 58.121 50.000 0.00 0.00 37.01 4.00
968 984 0.672401 AATACGCCACCAACCTGACG 60.672 55.000 0.00 0.00 0.00 4.35
1011 1027 4.088634 CCATTCCCAAAGAAAGTCATCCA 58.911 43.478 0.00 0.00 38.21 3.41
1013 1029 5.473039 CATTCCCAAAGAAAGTCATCCAAC 58.527 41.667 0.00 0.00 38.21 3.77
1022 1043 4.217118 AGAAAGTCATCCAACAATCACTGC 59.783 41.667 0.00 0.00 0.00 4.40
1043 1064 3.696898 CAAGAGATTAGGAACCTCGTCG 58.303 50.000 0.00 0.00 32.52 5.12
1085 1106 3.626924 GTCGGTGCAGTCCTGGGT 61.627 66.667 0.00 0.00 0.00 4.51
1121 1142 2.176055 CACCGTCGGTCAGTCTCG 59.824 66.667 15.67 0.00 31.02 4.04
1126 1147 1.674980 GTCGGTCAGTCTCGGTCCT 60.675 63.158 0.00 0.00 0.00 3.85
1154 1175 0.105658 CCCTTCCCTCCCGTGATCTA 60.106 60.000 0.00 0.00 0.00 1.98
1191 1218 2.929960 ACGTAGTTGTGATGTGAGACG 58.070 47.619 0.00 0.00 37.78 4.18
1208 1243 5.517054 GTGAGACGAGGTACTGATTTTGATC 59.483 44.000 0.00 0.00 41.55 2.92
1210 1245 4.158025 AGACGAGGTACTGATTTTGATCGT 59.842 41.667 0.00 0.00 41.55 3.73
1346 1381 2.578713 CACCACTACTACGCCGCG 60.579 66.667 12.14 12.14 0.00 6.46
1444 1479 2.126031 GGAGAACGAGCGGTGGAC 60.126 66.667 2.87 0.00 0.00 4.02
1685 1732 2.043941 GATGGGGGTGGGGGTAGT 59.956 66.667 0.00 0.00 0.00 2.73
1742 1803 1.243342 CCAAGAAACCCAGCGATGCA 61.243 55.000 0.00 0.00 0.00 3.96
1747 1808 1.534336 AAACCCAGCGATGCATTGCA 61.534 50.000 34.75 14.72 44.86 4.08
1805 1866 5.940192 AGTTGATCGAATAAACAACAGCA 57.060 34.783 17.65 0.00 43.06 4.41
1883 1944 2.687902 AGGCCGGCCTAGTGAGTA 59.312 61.111 46.67 0.00 46.14 2.59
1884 1945 1.233369 AGGCCGGCCTAGTGAGTAT 59.767 57.895 46.67 20.29 46.14 2.12
1885 1946 0.828343 AGGCCGGCCTAGTGAGTATC 60.828 60.000 46.67 15.00 46.14 2.24
1886 1947 0.828343 GGCCGGCCTAGTGAGTATCT 60.828 60.000 38.76 0.00 34.92 1.98
1887 1948 0.315568 GCCGGCCTAGTGAGTATCTG 59.684 60.000 18.11 0.00 34.92 2.90
1888 1949 0.962489 CCGGCCTAGTGAGTATCTGG 59.038 60.000 0.00 0.00 34.92 3.86
1889 1950 1.693627 CGGCCTAGTGAGTATCTGGT 58.306 55.000 0.00 0.00 34.92 4.00
1890 1951 1.338337 CGGCCTAGTGAGTATCTGGTG 59.662 57.143 0.00 0.00 34.92 4.17
1891 1952 2.667470 GGCCTAGTGAGTATCTGGTGA 58.333 52.381 0.00 0.00 34.92 4.02
1892 1953 3.235200 GGCCTAGTGAGTATCTGGTGAT 58.765 50.000 0.00 0.00 34.92 3.06
1893 1954 4.408276 GGCCTAGTGAGTATCTGGTGATA 58.592 47.826 0.00 0.00 34.92 2.15
1899 1960 3.491581 GTATCTGGTGATACCGCGG 57.508 57.895 26.86 26.86 45.62 6.46
1900 1961 0.666577 GTATCTGGTGATACCGCGGC 60.667 60.000 28.58 10.14 45.62 6.53
1901 1962 0.826256 TATCTGGTGATACCGCGGCT 60.826 55.000 28.58 13.87 42.58 5.52
1902 1963 2.088674 ATCTGGTGATACCGCGGCTC 62.089 60.000 28.58 22.74 42.58 4.70
1903 1964 3.071837 TGGTGATACCGCGGCTCA 61.072 61.111 28.58 25.22 42.58 4.26
1904 1965 2.279517 GGTGATACCGCGGCTCAG 60.280 66.667 28.58 0.11 0.00 3.35
1905 1966 2.279517 GTGATACCGCGGCTCAGG 60.280 66.667 28.58 0.00 0.00 3.86
1906 1967 2.758327 TGATACCGCGGCTCAGGT 60.758 61.111 28.58 7.06 44.08 4.00
1907 1968 2.279517 GATACCGCGGCTCAGGTG 60.280 66.667 28.58 0.00 41.51 4.00
1908 1969 4.530857 ATACCGCGGCTCAGGTGC 62.531 66.667 28.58 0.00 41.51 5.01
1914 1975 3.760035 CGGCTCAGGTGCTACCGT 61.760 66.667 0.00 0.00 44.90 4.83
1915 1976 2.125512 GGCTCAGGTGCTACCGTG 60.126 66.667 0.00 0.00 44.90 4.94
1916 1977 2.646175 GGCTCAGGTGCTACCGTGA 61.646 63.158 0.00 0.00 44.90 4.35
1917 1978 1.517832 GCTCAGGTGCTACCGTGAT 59.482 57.895 0.00 0.00 44.90 3.06
1918 1979 0.744874 GCTCAGGTGCTACCGTGATA 59.255 55.000 0.00 0.00 44.90 2.15
1919 1980 1.536284 GCTCAGGTGCTACCGTGATAC 60.536 57.143 0.00 0.00 44.90 2.24
1920 1981 0.736636 TCAGGTGCTACCGTGATACG 59.263 55.000 0.00 0.00 44.90 3.06
1921 1982 0.736636 CAGGTGCTACCGTGATACGA 59.263 55.000 2.52 0.00 46.05 3.43
1922 1983 1.022735 AGGTGCTACCGTGATACGAG 58.977 55.000 2.52 0.00 46.05 4.18
1923 1984 0.594284 GGTGCTACCGTGATACGAGC 60.594 60.000 2.52 5.61 46.05 5.03
1924 1985 0.381089 GTGCTACCGTGATACGAGCT 59.619 55.000 13.61 0.00 46.05 4.09
1925 1986 0.661552 TGCTACCGTGATACGAGCTC 59.338 55.000 2.73 2.73 46.05 4.09
1926 1987 0.040246 GCTACCGTGATACGAGCTCC 60.040 60.000 8.47 0.00 46.05 4.70
1927 1988 1.595466 CTACCGTGATACGAGCTCCT 58.405 55.000 8.47 0.00 46.05 3.69
1928 1989 1.264557 CTACCGTGATACGAGCTCCTG 59.735 57.143 8.47 0.00 46.05 3.86
1929 1990 1.360551 CCGTGATACGAGCTCCTGG 59.639 63.158 8.47 0.00 46.05 4.45
1930 1991 1.360551 CGTGATACGAGCTCCTGGG 59.639 63.158 8.47 0.00 46.05 4.45
1931 1992 1.068250 GTGATACGAGCTCCTGGGC 59.932 63.158 8.47 0.00 0.00 5.36
1932 1993 2.134287 TGATACGAGCTCCTGGGCC 61.134 63.158 8.47 0.00 0.00 5.80
1933 1994 3.214250 GATACGAGCTCCTGGGCCG 62.214 68.421 8.47 0.00 34.12 6.13
1934 1995 4.753662 TACGAGCTCCTGGGCCGT 62.754 66.667 8.47 18.93 40.25 5.68
1940 2001 3.917760 CTCCTGGGCCGTCGGATC 61.918 72.222 17.49 6.39 0.00 3.36
1946 2007 3.234730 GGCCGTCGGATCCCAGAT 61.235 66.667 17.49 0.00 0.00 2.90
1947 2008 2.340443 GCCGTCGGATCCCAGATC 59.660 66.667 17.49 0.00 0.00 2.75
1948 2009 3.052081 CCGTCGGATCCCAGATCC 58.948 66.667 4.91 12.74 34.90 3.36
1949 2010 1.832608 CCGTCGGATCCCAGATCCA 60.833 63.158 20.62 7.74 38.08 3.41
1950 2011 1.399744 CCGTCGGATCCCAGATCCAA 61.400 60.000 20.62 2.40 38.08 3.53
1951 2012 0.681733 CGTCGGATCCCAGATCCAAT 59.318 55.000 20.62 0.00 38.08 3.16
1952 2013 1.606480 CGTCGGATCCCAGATCCAATG 60.606 57.143 20.62 6.87 38.08 2.82
1953 2014 1.059098 TCGGATCCCAGATCCAATGG 58.941 55.000 20.62 0.00 38.08 3.16
1954 2015 0.607489 CGGATCCCAGATCCAATGGC 60.607 60.000 20.62 0.00 38.08 4.40
1955 2016 0.479815 GGATCCCAGATCCAATGGCA 59.520 55.000 16.97 0.00 38.09 4.92
1956 2017 1.133388 GGATCCCAGATCCAATGGCAA 60.133 52.381 16.97 0.00 38.09 4.52
1957 2018 2.669781 GATCCCAGATCCAATGGCAAA 58.330 47.619 0.00 0.00 36.43 3.68
1958 2019 1.851304 TCCCAGATCCAATGGCAAAC 58.149 50.000 0.00 0.00 36.43 2.93
1959 2020 1.076841 TCCCAGATCCAATGGCAAACA 59.923 47.619 0.00 0.00 36.43 2.83
1960 2021 1.479323 CCCAGATCCAATGGCAAACAG 59.521 52.381 0.00 0.00 36.43 3.16
1961 2022 1.479323 CCAGATCCAATGGCAAACAGG 59.521 52.381 0.00 0.00 0.00 4.00
1962 2023 1.479323 CAGATCCAATGGCAAACAGGG 59.521 52.381 0.00 0.00 0.00 4.45
1963 2024 1.358787 AGATCCAATGGCAAACAGGGA 59.641 47.619 0.00 0.00 39.80 4.20
1964 2025 1.753073 GATCCAATGGCAAACAGGGAG 59.247 52.381 0.00 0.00 39.13 4.30
1965 2026 0.899717 TCCAATGGCAAACAGGGAGC 60.900 55.000 0.00 0.00 33.12 4.70
1966 2027 0.901580 CCAATGGCAAACAGGGAGCT 60.902 55.000 0.00 0.00 31.02 4.09
1967 2028 0.245539 CAATGGCAAACAGGGAGCTG 59.754 55.000 0.00 0.00 0.00 4.24
1968 2029 1.538687 AATGGCAAACAGGGAGCTGC 61.539 55.000 0.00 0.00 0.00 5.25
1969 2030 2.282745 GGCAAACAGGGAGCTGCT 60.283 61.111 0.00 0.00 35.13 4.24
1970 2031 2.633509 GGCAAACAGGGAGCTGCTG 61.634 63.158 7.01 4.17 35.13 4.41
1971 2032 1.900498 GCAAACAGGGAGCTGCTGT 60.900 57.895 7.01 4.84 0.00 4.40
1972 2033 0.606401 GCAAACAGGGAGCTGCTGTA 60.606 55.000 7.01 0.00 0.00 2.74
1973 2034 1.446907 CAAACAGGGAGCTGCTGTAG 58.553 55.000 7.01 0.00 0.00 2.74
1985 2046 3.670311 CTGCTGTAGCTGCTGTATTTG 57.330 47.619 13.43 0.00 42.66 2.32
1986 2047 3.005554 CTGCTGTAGCTGCTGTATTTGT 58.994 45.455 13.43 0.00 42.66 2.83
1987 2048 2.743664 TGCTGTAGCTGCTGTATTTGTG 59.256 45.455 13.43 0.00 42.66 3.33
1988 2049 2.476854 GCTGTAGCTGCTGTATTTGTGC 60.477 50.000 13.43 1.88 38.21 4.57
1989 2050 1.731709 TGTAGCTGCTGTATTTGTGCG 59.268 47.619 13.43 0.00 0.00 5.34
1990 2051 0.726827 TAGCTGCTGTATTTGTGCGC 59.273 50.000 13.43 0.00 0.00 6.09
1991 2052 1.209898 GCTGCTGTATTTGTGCGCA 59.790 52.632 5.66 5.66 0.00 6.09
1992 2053 0.179156 GCTGCTGTATTTGTGCGCAT 60.179 50.000 15.91 0.00 0.00 4.73
1993 2054 1.733389 GCTGCTGTATTTGTGCGCATT 60.733 47.619 15.91 1.38 0.00 3.56
1994 2055 2.598589 CTGCTGTATTTGTGCGCATTT 58.401 42.857 15.91 0.97 0.00 2.32
1995 2056 2.988493 CTGCTGTATTTGTGCGCATTTT 59.012 40.909 15.91 1.37 0.00 1.82
1996 2057 3.388308 TGCTGTATTTGTGCGCATTTTT 58.612 36.364 15.91 1.79 0.00 1.94
1997 2058 3.428198 TGCTGTATTTGTGCGCATTTTTC 59.572 39.130 15.91 0.00 0.00 2.29
1998 2059 3.428198 GCTGTATTTGTGCGCATTTTTCA 59.572 39.130 15.91 2.70 0.00 2.69
1999 2060 4.433283 GCTGTATTTGTGCGCATTTTTCAG 60.433 41.667 15.91 18.23 0.00 3.02
2000 2061 4.864633 TGTATTTGTGCGCATTTTTCAGA 58.135 34.783 15.91 1.25 0.00 3.27
2001 2062 5.468592 TGTATTTGTGCGCATTTTTCAGAT 58.531 33.333 15.91 9.79 0.00 2.90
2002 2063 5.925397 TGTATTTGTGCGCATTTTTCAGATT 59.075 32.000 15.91 0.00 0.00 2.40
2003 2064 5.927954 ATTTGTGCGCATTTTTCAGATTT 57.072 30.435 15.91 0.00 0.00 2.17
2004 2065 5.731599 TTTGTGCGCATTTTTCAGATTTT 57.268 30.435 15.91 0.00 0.00 1.82
2005 2066 6.834959 TTTGTGCGCATTTTTCAGATTTTA 57.165 29.167 15.91 0.00 0.00 1.52
2006 2067 5.820926 TGTGCGCATTTTTCAGATTTTAC 57.179 34.783 15.91 0.00 0.00 2.01
2007 2068 4.381270 TGTGCGCATTTTTCAGATTTTACG 59.619 37.500 15.91 0.00 0.00 3.18
2008 2069 4.615121 GTGCGCATTTTTCAGATTTTACGA 59.385 37.500 15.91 0.00 0.00 3.43
2009 2070 4.851014 TGCGCATTTTTCAGATTTTACGAG 59.149 37.500 5.66 0.00 0.00 4.18
2010 2071 4.262976 GCGCATTTTTCAGATTTTACGAGG 59.737 41.667 0.30 0.00 0.00 4.63
2011 2072 4.793216 CGCATTTTTCAGATTTTACGAGGG 59.207 41.667 0.00 0.00 0.00 4.30
2012 2073 4.562789 GCATTTTTCAGATTTTACGAGGGC 59.437 41.667 0.00 0.00 0.00 5.19
2013 2074 5.622233 GCATTTTTCAGATTTTACGAGGGCT 60.622 40.000 0.00 0.00 0.00 5.19
2014 2075 6.389906 CATTTTTCAGATTTTACGAGGGCTT 58.610 36.000 0.00 0.00 0.00 4.35
2015 2076 6.399639 TTTTTCAGATTTTACGAGGGCTTT 57.600 33.333 0.00 0.00 0.00 3.51
2016 2077 6.399639 TTTTCAGATTTTACGAGGGCTTTT 57.600 33.333 0.00 0.00 0.00 2.27
2017 2078 6.399639 TTTCAGATTTTACGAGGGCTTTTT 57.600 33.333 0.00 0.00 0.00 1.94
2045 2106 4.978083 AATGTCATCATTTCACAGGAGC 57.022 40.909 0.00 0.00 40.88 4.70
2046 2107 3.708403 TGTCATCATTTCACAGGAGCT 57.292 42.857 0.00 0.00 0.00 4.09
2047 2108 3.603532 TGTCATCATTTCACAGGAGCTC 58.396 45.455 4.71 4.71 0.00 4.09
2048 2109 3.262660 TGTCATCATTTCACAGGAGCTCT 59.737 43.478 14.64 0.00 0.00 4.09
2049 2110 4.260170 GTCATCATTTCACAGGAGCTCTT 58.740 43.478 14.64 2.08 0.00 2.85
2050 2111 4.094590 GTCATCATTTCACAGGAGCTCTTG 59.905 45.833 23.14 23.14 0.00 3.02
2051 2112 3.063510 TCATTTCACAGGAGCTCTTGG 57.936 47.619 27.37 16.98 0.00 3.61
2052 2113 2.639347 TCATTTCACAGGAGCTCTTGGA 59.361 45.455 27.37 18.77 0.00 3.53
2053 2114 3.265221 TCATTTCACAGGAGCTCTTGGAT 59.735 43.478 27.37 13.74 0.00 3.41
2054 2115 3.340814 TTTCACAGGAGCTCTTGGATC 57.659 47.619 27.37 4.06 0.00 3.36
2055 2116 2.244486 TCACAGGAGCTCTTGGATCT 57.756 50.000 27.37 5.85 0.00 2.75
2056 2117 3.388552 TCACAGGAGCTCTTGGATCTA 57.611 47.619 27.37 7.18 0.00 1.98
2057 2118 3.713003 TCACAGGAGCTCTTGGATCTAA 58.287 45.455 27.37 5.57 0.00 2.10
2058 2119 3.703556 TCACAGGAGCTCTTGGATCTAAG 59.296 47.826 27.37 12.38 0.00 2.18
2059 2120 3.703556 CACAGGAGCTCTTGGATCTAAGA 59.296 47.826 27.37 19.20 35.51 2.10
2060 2121 4.344679 CACAGGAGCTCTTGGATCTAAGAT 59.655 45.833 27.37 8.19 36.21 2.40
2061 2122 4.588528 ACAGGAGCTCTTGGATCTAAGATC 59.411 45.833 27.37 16.62 36.21 2.75
2062 2123 4.021192 CAGGAGCTCTTGGATCTAAGATCC 60.021 50.000 23.98 23.98 36.65 3.36
2063 2124 3.900601 GGAGCTCTTGGATCTAAGATCCA 59.099 47.826 25.41 12.33 45.71 3.41
2069 2130 3.795688 TGGATCTAAGATCCAATGGCC 57.204 47.619 16.82 0.00 44.54 5.36
2070 2131 2.038952 TGGATCTAAGATCCAATGGCCG 59.961 50.000 16.82 0.00 44.54 6.13
2071 2132 2.303022 GGATCTAAGATCCAATGGCCGA 59.697 50.000 0.00 0.00 38.09 5.54
2072 2133 3.594134 GATCTAAGATCCAATGGCCGAG 58.406 50.000 0.00 0.00 0.00 4.63
2073 2134 1.070758 TCTAAGATCCAATGGCCGAGC 59.929 52.381 0.00 0.00 0.00 5.03
2074 2135 1.071385 CTAAGATCCAATGGCCGAGCT 59.929 52.381 0.00 0.00 0.00 4.09
2075 2136 0.179034 AAGATCCAATGGCCGAGCTC 60.179 55.000 2.73 2.73 0.00 4.09
2076 2137 1.958205 GATCCAATGGCCGAGCTCG 60.958 63.158 29.06 29.06 39.44 5.03
2077 2138 4.838152 TCCAATGGCCGAGCTCGC 62.838 66.667 30.49 23.62 38.18 5.03
2079 2140 3.869272 CAATGGCCGAGCTCGCAC 61.869 66.667 30.49 23.38 38.18 5.34
2090 2151 3.449227 CTCGCACGGGAGCACCTA 61.449 66.667 0.00 0.00 36.97 3.08
2091 2152 2.992689 TCGCACGGGAGCACCTAA 60.993 61.111 0.00 0.00 36.97 2.69
2092 2153 2.509336 CGCACGGGAGCACCTAAG 60.509 66.667 0.00 0.00 36.97 2.18
2093 2154 2.820037 GCACGGGAGCACCTAAGC 60.820 66.667 0.00 0.00 36.97 3.09
2095 2156 1.296715 CACGGGAGCACCTAAGCTT 59.703 57.895 3.48 3.48 46.75 3.74
2096 2157 0.535335 CACGGGAGCACCTAAGCTTA 59.465 55.000 5.94 5.94 46.75 3.09
2097 2158 0.824759 ACGGGAGCACCTAAGCTTAG 59.175 55.000 24.11 24.11 46.75 2.18
2106 2167 0.105039 CCTAAGCTTAGGTGCTCCCG 59.895 60.000 35.30 14.28 44.26 5.14
2107 2168 0.105039 CTAAGCTTAGGTGCTCCCGG 59.895 60.000 23.48 0.00 43.24 5.73
2108 2169 0.324923 TAAGCTTAGGTGCTCCCGGA 60.325 55.000 0.73 0.00 43.24 5.14
2109 2170 1.617947 AAGCTTAGGTGCTCCCGGAG 61.618 60.000 10.41 10.41 43.24 4.63
2118 2179 4.277552 CTCCCGGAGCACCTGATA 57.722 61.111 0.73 0.00 0.00 2.15
2119 2180 2.751991 CTCCCGGAGCACCTGATAT 58.248 57.895 0.73 0.00 0.00 1.63
2120 2181 1.051812 CTCCCGGAGCACCTGATATT 58.948 55.000 0.73 0.00 0.00 1.28
2121 2182 1.417890 CTCCCGGAGCACCTGATATTT 59.582 52.381 0.73 0.00 0.00 1.40
2122 2183 1.843851 TCCCGGAGCACCTGATATTTT 59.156 47.619 0.73 0.00 0.00 1.82
2123 2184 2.158813 TCCCGGAGCACCTGATATTTTC 60.159 50.000 0.73 0.00 0.00 2.29
2124 2185 2.222027 CCGGAGCACCTGATATTTTCC 58.778 52.381 0.00 0.00 0.00 3.13
2125 2186 2.222027 CGGAGCACCTGATATTTTCCC 58.778 52.381 0.00 0.00 0.00 3.97
2126 2187 2.222027 GGAGCACCTGATATTTTCCCG 58.778 52.381 0.00 0.00 0.00 5.14
2127 2188 1.604278 GAGCACCTGATATTTTCCCGC 59.396 52.381 0.00 0.00 0.00 6.13
2128 2189 0.668535 GCACCTGATATTTTCCCGCC 59.331 55.000 0.00 0.00 0.00 6.13
2129 2190 0.944386 CACCTGATATTTTCCCGCCG 59.056 55.000 0.00 0.00 0.00 6.46
2130 2191 0.179029 ACCTGATATTTTCCCGCCGG 60.179 55.000 0.00 0.00 0.00 6.13
2131 2192 1.515521 CCTGATATTTTCCCGCCGGC 61.516 60.000 19.07 19.07 0.00 6.13
2132 2193 1.515521 CTGATATTTTCCCGCCGGCC 61.516 60.000 23.46 2.48 0.00 6.13
2188 2249 6.605594 GGTTGTTACATTATCCATTCAAGGGA 59.394 38.462 0.00 0.00 39.14 4.20
2201 2262 7.768643 TCCATTCAAGGGATCCATATGTTAAT 58.231 34.615 15.23 3.42 0.00 1.40
2226 2287 5.490357 TGGATCTGGAAGGAAGAATCTTTCT 59.510 40.000 0.00 0.00 40.49 2.52
2254 2315 6.345096 AGAAAGTGGAGAAAAGAGAGAGAG 57.655 41.667 0.00 0.00 0.00 3.20
2333 2394 6.037610 GCAAGGTATGGTAATGTCTTTGAGAG 59.962 42.308 0.00 0.00 0.00 3.20
2339 2400 9.871238 GTATGGTAATGTCTTTGAGAGTCTTTA 57.129 33.333 0.00 0.00 0.00 1.85
2357 2418 5.790495 GTCTTTAGAGTATTTTGCTGCAACG 59.210 40.000 15.72 0.00 0.00 4.10
2404 2473 8.732746 AATTAGGTGTAAAGTTATGGCTACAG 57.267 34.615 0.00 0.00 0.00 2.74
2406 2475 4.019681 AGGTGTAAAGTTATGGCTACAGCA 60.020 41.667 13.48 0.00 42.45 4.41
2427 2496 2.951726 GCAACCAGCAAATTTCCTCTC 58.048 47.619 0.00 0.00 44.79 3.20
2432 2501 4.589908 ACCAGCAAATTTCCTCTCGTATT 58.410 39.130 0.00 0.00 0.00 1.89
2436 2505 4.935808 AGCAAATTTCCTCTCGTATTCGTT 59.064 37.500 0.00 0.00 38.33 3.85
2441 2510 0.928908 CCTCTCGTATTCGTTCGCGG 60.929 60.000 6.13 0.00 41.70 6.46
2487 2558 4.864334 CGGGAGGCAGCCATCCAC 62.864 72.222 23.76 15.32 37.33 4.02
2505 2576 4.485875 TCCACCCGTATCCTGTATATGTT 58.514 43.478 0.00 0.00 0.00 2.71
2506 2577 5.643176 TCCACCCGTATCCTGTATATGTTA 58.357 41.667 0.00 0.00 0.00 2.41
2508 2579 5.408356 CACCCGTATCCTGTATATGTTAGC 58.592 45.833 0.00 0.00 0.00 3.09
2544 2615 4.614555 TCAAATATGCGTTGATCCACAC 57.385 40.909 0.00 0.00 30.08 3.82
2552 2623 0.306533 GTTGATCCACACAACGCGTT 59.693 50.000 20.79 20.79 38.23 4.84
2558 2629 1.502990 CCACACAACGCGTTGGATCA 61.503 55.000 43.98 0.00 44.45 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.894184 ACCGAGGCGAAGAAGACTCA 60.894 55.000 0.57 0.00 46.44 3.41
110 113 2.381618 TCTTCCCAAAACCCATCATCCA 59.618 45.455 0.00 0.00 0.00 3.41
118 121 2.622962 CGGCGTCTTCCCAAAACCC 61.623 63.158 0.00 0.00 0.00 4.11
184 187 1.736126 TCTCGTCGTCTACTCGCATTT 59.264 47.619 0.00 0.00 0.00 2.32
192 195 1.005340 ATCACCGTCTCGTCGTCTAC 58.995 55.000 0.00 0.00 0.00 2.59
199 202 3.108343 CCGCTATCACCGTCTCGT 58.892 61.111 0.00 0.00 0.00 4.18
251 254 0.640495 TCCTATCCGGAAACCCTCCT 59.360 55.000 9.01 0.00 42.85 3.69
252 255 0.757512 GTCCTATCCGGAAACCCTCC 59.242 60.000 9.01 0.00 45.32 4.30
319 323 3.247006 TCCTCTATGTCGGCTCAAAAC 57.753 47.619 0.00 0.00 0.00 2.43
325 329 4.192317 GTTTGAAATCCTCTATGTCGGCT 58.808 43.478 0.00 0.00 0.00 5.52
350 360 3.055819 GCTCACCAAATCAGACCAGACTA 60.056 47.826 0.00 0.00 0.00 2.59
360 370 0.592637 CAACGCAGCTCACCAAATCA 59.407 50.000 0.00 0.00 0.00 2.57
415 425 5.008613 GCGGCTCATCAAATTGTCCTAAATA 59.991 40.000 0.00 0.00 0.00 1.40
424 434 1.135717 TCAACGCGGCTCATCAAATTG 60.136 47.619 12.47 1.28 0.00 2.32
437 447 3.303329 CCCAATATGACATCTTCAACGCG 60.303 47.826 3.53 3.53 37.92 6.01
441 451 6.158520 TCCTCTTCCCAATATGACATCTTCAA 59.841 38.462 0.00 0.00 37.92 2.69
442 452 5.667172 TCCTCTTCCCAATATGACATCTTCA 59.333 40.000 0.00 0.00 39.11 3.02
443 453 6.179906 TCCTCTTCCCAATATGACATCTTC 57.820 41.667 0.00 0.00 0.00 2.87
444 454 5.669447 ACTCCTCTTCCCAATATGACATCTT 59.331 40.000 0.00 0.00 0.00 2.40
445 455 5.222870 ACTCCTCTTCCCAATATGACATCT 58.777 41.667 0.00 0.00 0.00 2.90
465 475 2.805099 CAGAGGAAGCAGTTGTGAACTC 59.195 50.000 0.00 0.00 40.46 3.01
466 476 2.171448 ACAGAGGAAGCAGTTGTGAACT 59.829 45.455 0.00 0.00 44.06 3.01
467 477 2.545946 GACAGAGGAAGCAGTTGTGAAC 59.454 50.000 0.00 0.00 0.00 3.18
468 478 2.485479 GGACAGAGGAAGCAGTTGTGAA 60.485 50.000 0.00 0.00 0.00 3.18
469 479 1.070758 GGACAGAGGAAGCAGTTGTGA 59.929 52.381 0.00 0.00 0.00 3.58
470 480 1.517242 GGACAGAGGAAGCAGTTGTG 58.483 55.000 0.00 0.00 0.00 3.33
473 483 0.832135 TCCGGACAGAGGAAGCAGTT 60.832 55.000 0.00 0.00 34.33 3.16
474 484 0.832135 TTCCGGACAGAGGAAGCAGT 60.832 55.000 1.83 0.00 42.33 4.40
475 485 1.975327 TTCCGGACAGAGGAAGCAG 59.025 57.895 1.83 0.00 42.33 4.24
476 486 4.208426 TTCCGGACAGAGGAAGCA 57.792 55.556 1.83 0.00 42.33 3.91
479 489 3.581332 ACAAGTATTTCCGGACAGAGGAA 59.419 43.478 1.83 0.00 45.19 3.36
481 491 3.056107 TGACAAGTATTTCCGGACAGAGG 60.056 47.826 1.83 0.00 0.00 3.69
483 493 4.221924 TGATGACAAGTATTTCCGGACAGA 59.778 41.667 1.83 0.00 0.00 3.41
484 494 4.503910 TGATGACAAGTATTTCCGGACAG 58.496 43.478 1.83 0.00 0.00 3.51
485 495 4.545208 TGATGACAAGTATTTCCGGACA 57.455 40.909 1.83 0.00 0.00 4.02
486 496 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
487 497 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
488 498 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
489 499 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
541 551 8.915036 GGACAAAAGAGGATGTATCTAGAACTA 58.085 37.037 0.00 0.00 0.00 2.24
542 552 7.400339 TGGACAAAAGAGGATGTATCTAGAACT 59.600 37.037 0.00 0.00 0.00 3.01
543 553 7.556844 TGGACAAAAGAGGATGTATCTAGAAC 58.443 38.462 0.00 0.00 0.00 3.01
544 554 7.733773 TGGACAAAAGAGGATGTATCTAGAA 57.266 36.000 0.00 0.00 0.00 2.10
545 555 7.921041 ATGGACAAAAGAGGATGTATCTAGA 57.079 36.000 0.00 0.00 0.00 2.43
546 556 8.970859 AAATGGACAAAAGAGGATGTATCTAG 57.029 34.615 0.00 0.00 0.00 2.43
547 557 9.177608 CAAAATGGACAAAAGAGGATGTATCTA 57.822 33.333 0.00 0.00 0.00 1.98
548 558 7.890127 TCAAAATGGACAAAAGAGGATGTATCT 59.110 33.333 0.00 0.00 0.00 1.98
549 559 8.055279 TCAAAATGGACAAAAGAGGATGTATC 57.945 34.615 0.00 0.00 0.00 2.24
550 560 8.472413 CATCAAAATGGACAAAAGAGGATGTAT 58.528 33.333 0.00 0.00 0.00 2.29
551 561 7.669304 TCATCAAAATGGACAAAAGAGGATGTA 59.331 33.333 0.00 0.00 33.42 2.29
552 562 6.494491 TCATCAAAATGGACAAAAGAGGATGT 59.506 34.615 0.00 0.00 33.42 3.06
553 563 6.810182 GTCATCAAAATGGACAAAAGAGGATG 59.190 38.462 0.00 0.00 33.42 3.51
554 564 6.494491 TGTCATCAAAATGGACAAAAGAGGAT 59.506 34.615 0.00 0.00 33.42 3.24
555 565 5.832595 TGTCATCAAAATGGACAAAAGAGGA 59.167 36.000 0.00 0.00 33.42 3.71
556 566 6.088016 TGTCATCAAAATGGACAAAAGAGG 57.912 37.500 0.00 0.00 33.42 3.69
557 567 7.205297 ACTTGTCATCAAAATGGACAAAAGAG 58.795 34.615 7.70 0.00 34.98 2.85
558 568 7.111247 ACTTGTCATCAAAATGGACAAAAGA 57.889 32.000 7.70 0.00 34.98 2.52
559 569 9.480053 AATACTTGTCATCAAAATGGACAAAAG 57.520 29.630 7.70 0.73 34.98 2.27
560 570 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
561 571 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
562 572 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
563 573 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
564 574 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
565 575 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
566 576 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
567 577 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
568 578 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
569 579 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
570 580 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
571 581 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
572 582 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
573 583 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
574 584 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
575 585 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
576 586 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
577 587 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
578 588 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
579 589 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
580 590 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
581 591 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
582 592 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
583 593 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
584 594 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
585 595 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
586 596 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
587 597 0.750546 CACATACTCCCTCCGTCCGA 60.751 60.000 0.00 0.00 0.00 4.55
588 598 0.750546 TCACATACTCCCTCCGTCCG 60.751 60.000 0.00 0.00 0.00 4.79
589 599 1.705873 ATCACATACTCCCTCCGTCC 58.294 55.000 0.00 0.00 0.00 4.79
590 600 3.256136 CCTAATCACATACTCCCTCCGTC 59.744 52.174 0.00 0.00 0.00 4.79
591 601 3.117246 TCCTAATCACATACTCCCTCCGT 60.117 47.826 0.00 0.00 0.00 4.69
592 602 3.497332 TCCTAATCACATACTCCCTCCG 58.503 50.000 0.00 0.00 0.00 4.63
593 603 3.259625 GCTCCTAATCACATACTCCCTCC 59.740 52.174 0.00 0.00 0.00 4.30
594 604 3.898123 TGCTCCTAATCACATACTCCCTC 59.102 47.826 0.00 0.00 0.00 4.30
595 605 3.643792 GTGCTCCTAATCACATACTCCCT 59.356 47.826 0.00 0.00 33.63 4.20
596 606 3.244249 GGTGCTCCTAATCACATACTCCC 60.244 52.174 0.00 0.00 35.04 4.30
597 607 3.244249 GGGTGCTCCTAATCACATACTCC 60.244 52.174 4.53 0.00 35.04 3.85
598 608 3.643792 AGGGTGCTCCTAATCACATACTC 59.356 47.826 4.53 0.00 45.98 2.59
599 609 3.658725 AGGGTGCTCCTAATCACATACT 58.341 45.455 4.53 0.00 45.98 2.12
611 621 0.324943 TTCACTGCTAAGGGTGCTCC 59.675 55.000 0.00 0.00 33.91 4.70
612 622 2.079925 CTTTCACTGCTAAGGGTGCTC 58.920 52.381 0.00 0.00 33.91 4.26
613 623 1.271597 CCTTTCACTGCTAAGGGTGCT 60.272 52.381 0.00 0.00 37.78 4.40
633 643 8.074370 GGTTATTTCTTAGACAAGTTGGACAAC 58.926 37.037 7.96 7.08 41.45 3.32
684 694 9.515226 TGATAGCTTTAACAAACTGGTTATTCT 57.485 29.630 0.00 0.00 33.56 2.40
685 695 9.556030 GTGATAGCTTTAACAAACTGGTTATTC 57.444 33.333 0.00 0.00 33.56 1.75
688 699 7.174253 CCAGTGATAGCTTTAACAAACTGGTTA 59.826 37.037 9.78 0.00 45.39 2.85
691 702 5.942872 CCAGTGATAGCTTTAACAAACTGG 58.057 41.667 4.28 4.28 45.25 4.00
712 723 1.610967 TCTGTATCACGGGTGCCCA 60.611 57.895 8.14 0.00 35.37 5.36
713 724 1.153429 GTCTGTATCACGGGTGCCC 60.153 63.158 0.00 0.00 0.00 5.36
714 725 1.518572 CGTCTGTATCACGGGTGCC 60.519 63.158 0.00 0.00 33.46 5.01
802 817 2.224233 GGAGGTAGCCCGAGGTTTTATC 60.224 54.545 0.00 0.00 35.12 1.75
968 984 0.595095 GAATTGGATGGGATCAGCGC 59.405 55.000 0.00 0.00 0.00 5.92
1011 1027 5.809001 TCCTAATCTCTTGCAGTGATTGTT 58.191 37.500 16.13 5.52 38.45 2.83
1013 1029 5.065731 GGTTCCTAATCTCTTGCAGTGATTG 59.934 44.000 16.13 9.25 38.45 2.67
1022 1043 3.377485 TCGACGAGGTTCCTAATCTCTTG 59.623 47.826 0.00 0.00 0.00 3.02
1043 1064 2.295909 CTCATCTTCTCCATCTCCGGTC 59.704 54.545 0.00 0.00 0.00 4.79
1148 1169 3.945921 ACAAGAAGACCGATCGTAGATCA 59.054 43.478 15.09 0.00 45.12 2.92
1154 1175 1.808945 ACGTACAAGAAGACCGATCGT 59.191 47.619 15.09 1.83 0.00 3.73
1163 1184 5.918576 TCACATCACAACTACGTACAAGAAG 59.081 40.000 0.00 0.00 0.00 2.85
1191 1218 4.265556 CACGACGATCAAAATCAGTACCTC 59.734 45.833 0.00 0.00 31.76 3.85
1346 1381 1.331399 CCTCCTCCTCCCTCCGTTTC 61.331 65.000 0.00 0.00 0.00 2.78
1418 1453 2.282958 TCGTTCTCCTGGCCGTCT 60.283 61.111 0.00 0.00 0.00 4.18
1444 1479 3.628032 TGAACGTCTGATCTGCTAGTAGG 59.372 47.826 8.07 0.00 0.00 3.18
1805 1866 2.567615 ACTTGGATAACTCAGGCGACTT 59.432 45.455 0.00 0.00 40.21 3.01
1882 1943 0.826256 AGCCGCGGTATCACCAGATA 60.826 55.000 28.70 0.00 38.47 1.98
1883 1944 2.088674 GAGCCGCGGTATCACCAGAT 62.089 60.000 28.70 0.00 38.47 2.90
1884 1945 2.758327 AGCCGCGGTATCACCAGA 60.758 61.111 28.70 0.00 38.47 3.86
1885 1946 2.279517 GAGCCGCGGTATCACCAG 60.280 66.667 28.70 0.00 38.47 4.00
1886 1947 3.071837 TGAGCCGCGGTATCACCA 61.072 61.111 28.70 12.55 38.47 4.17
1887 1948 2.279517 CTGAGCCGCGGTATCACC 60.280 66.667 28.70 8.76 34.05 4.02
1888 1949 2.279517 CCTGAGCCGCGGTATCAC 60.280 66.667 28.70 9.61 0.00 3.06
1889 1950 2.758327 ACCTGAGCCGCGGTATCA 60.758 61.111 28.70 27.39 0.00 2.15
1890 1951 2.279517 CACCTGAGCCGCGGTATC 60.280 66.667 28.70 24.37 30.91 2.24
1891 1952 4.530857 GCACCTGAGCCGCGGTAT 62.531 66.667 28.70 16.56 30.91 2.73
1897 1958 3.760035 ACGGTAGCACCTGAGCCG 61.760 66.667 0.00 0.00 46.83 5.52
1898 1959 1.961180 ATCACGGTAGCACCTGAGCC 61.961 60.000 4.21 0.00 35.66 4.70
1899 1960 0.744874 TATCACGGTAGCACCTGAGC 59.255 55.000 4.21 0.00 35.66 4.26
1900 1961 1.268589 CGTATCACGGTAGCACCTGAG 60.269 57.143 4.21 0.00 38.08 3.35
1901 1962 0.736636 CGTATCACGGTAGCACCTGA 59.263 55.000 4.21 6.78 38.08 3.86
1902 1963 0.736636 TCGTATCACGGTAGCACCTG 59.263 55.000 0.00 2.57 42.81 4.00
1903 1964 1.022735 CTCGTATCACGGTAGCACCT 58.977 55.000 0.00 0.00 42.81 4.00
1904 1965 0.594284 GCTCGTATCACGGTAGCACC 60.594 60.000 7.32 0.00 40.02 5.01
1905 1966 0.381089 AGCTCGTATCACGGTAGCAC 59.619 55.000 12.86 0.00 41.89 4.40
1906 1967 0.661552 GAGCTCGTATCACGGTAGCA 59.338 55.000 12.86 0.00 41.89 3.49
1907 1968 0.040246 GGAGCTCGTATCACGGTAGC 60.040 60.000 7.83 4.72 42.81 3.58
1908 1969 1.264557 CAGGAGCTCGTATCACGGTAG 59.735 57.143 8.91 0.00 42.81 3.18
1909 1970 1.306148 CAGGAGCTCGTATCACGGTA 58.694 55.000 8.91 0.00 42.81 4.02
1910 1971 1.384989 CCAGGAGCTCGTATCACGGT 61.385 60.000 8.91 0.00 42.81 4.83
1911 1972 1.360551 CCAGGAGCTCGTATCACGG 59.639 63.158 8.91 1.87 42.81 4.94
1912 1973 1.360551 CCCAGGAGCTCGTATCACG 59.639 63.158 8.91 0.00 44.19 4.35
1913 1974 1.068250 GCCCAGGAGCTCGTATCAC 59.932 63.158 8.91 0.00 0.00 3.06
1914 1975 2.134287 GGCCCAGGAGCTCGTATCA 61.134 63.158 8.91 0.00 0.00 2.15
1915 1976 2.737830 GGCCCAGGAGCTCGTATC 59.262 66.667 8.91 1.23 0.00 2.24
1916 1977 3.227276 CGGCCCAGGAGCTCGTAT 61.227 66.667 8.91 0.00 0.00 3.06
1917 1978 4.753662 ACGGCCCAGGAGCTCGTA 62.754 66.667 8.91 0.00 37.71 3.43
1923 1984 3.917760 GATCCGACGGCCCAGGAG 61.918 72.222 9.66 0.00 37.49 3.69
1929 1990 3.227792 GATCTGGGATCCGACGGCC 62.228 68.421 9.66 5.39 0.00 6.13
1930 1991 2.340443 GATCTGGGATCCGACGGC 59.660 66.667 9.66 0.00 0.00 5.68
1931 1992 1.399744 TTGGATCTGGGATCCGACGG 61.400 60.000 18.12 7.84 41.03 4.79
1932 1993 0.681733 ATTGGATCTGGGATCCGACG 59.318 55.000 16.15 0.00 41.03 5.12
1933 1994 1.271054 CCATTGGATCTGGGATCCGAC 60.271 57.143 16.15 0.00 41.03 4.79
1934 1995 1.059098 CCATTGGATCTGGGATCCGA 58.941 55.000 16.15 16.15 41.03 4.55
1935 1996 0.607489 GCCATTGGATCTGGGATCCG 60.607 60.000 18.12 7.97 41.03 4.18
1936 1997 0.479815 TGCCATTGGATCTGGGATCC 59.520 55.000 16.97 16.97 38.66 3.36
1937 1998 2.363359 GTTTGCCATTGGATCTGGGATC 59.637 50.000 6.95 0.00 33.79 3.36
1938 1999 2.292389 TGTTTGCCATTGGATCTGGGAT 60.292 45.455 6.95 0.00 33.79 3.85
1939 2000 1.076841 TGTTTGCCATTGGATCTGGGA 59.923 47.619 6.95 0.00 34.16 4.37
1940 2001 1.479323 CTGTTTGCCATTGGATCTGGG 59.521 52.381 6.95 0.00 34.16 4.45
1941 2002 1.479323 CCTGTTTGCCATTGGATCTGG 59.521 52.381 6.95 3.15 36.81 3.86
1942 2003 1.479323 CCCTGTTTGCCATTGGATCTG 59.521 52.381 6.95 0.00 0.00 2.90
1943 2004 1.358787 TCCCTGTTTGCCATTGGATCT 59.641 47.619 6.95 0.00 0.00 2.75
1944 2005 1.753073 CTCCCTGTTTGCCATTGGATC 59.247 52.381 6.95 0.00 0.00 3.36
1945 2006 1.856629 CTCCCTGTTTGCCATTGGAT 58.143 50.000 6.95 0.00 0.00 3.41
1946 2007 0.899717 GCTCCCTGTTTGCCATTGGA 60.900 55.000 6.95 0.00 0.00 3.53
1947 2008 0.901580 AGCTCCCTGTTTGCCATTGG 60.902 55.000 0.00 0.00 0.00 3.16
1948 2009 0.245539 CAGCTCCCTGTTTGCCATTG 59.754 55.000 0.00 0.00 34.31 2.82
1949 2010 1.538687 GCAGCTCCCTGTTTGCCATT 61.539 55.000 0.00 0.00 41.26 3.16
1950 2011 1.980772 GCAGCTCCCTGTTTGCCAT 60.981 57.895 0.00 0.00 41.26 4.40
1951 2012 2.598394 GCAGCTCCCTGTTTGCCA 60.598 61.111 0.00 0.00 41.26 4.92
1952 2013 2.282745 AGCAGCTCCCTGTTTGCC 60.283 61.111 0.00 0.00 41.26 4.52
1953 2014 0.606401 TACAGCAGCTCCCTGTTTGC 60.606 55.000 18.63 2.25 42.98 3.68
1954 2015 1.446907 CTACAGCAGCTCCCTGTTTG 58.553 55.000 18.63 10.49 42.98 2.93
1955 2016 3.944476 CTACAGCAGCTCCCTGTTT 57.056 52.632 18.63 1.69 42.98 2.83
1965 2026 3.005554 ACAAATACAGCAGCTACAGCAG 58.994 45.455 3.70 0.00 45.16 4.24
1966 2027 2.743664 CACAAATACAGCAGCTACAGCA 59.256 45.455 3.70 0.00 45.16 4.41
1967 2028 2.476854 GCACAAATACAGCAGCTACAGC 60.477 50.000 0.00 0.00 42.49 4.40
1968 2029 2.222886 CGCACAAATACAGCAGCTACAG 60.223 50.000 0.00 0.00 0.00 2.74
1969 2030 1.731709 CGCACAAATACAGCAGCTACA 59.268 47.619 0.00 0.00 0.00 2.74
1970 2031 1.529826 GCGCACAAATACAGCAGCTAC 60.530 52.381 0.30 0.00 0.00 3.58
1971 2032 0.726827 GCGCACAAATACAGCAGCTA 59.273 50.000 0.30 0.00 0.00 3.32
1972 2033 1.236616 TGCGCACAAATACAGCAGCT 61.237 50.000 5.66 0.00 33.57 4.24
1973 2034 0.179156 ATGCGCACAAATACAGCAGC 60.179 50.000 14.90 0.00 41.34 5.25
1974 2035 2.267188 AATGCGCACAAATACAGCAG 57.733 45.000 14.90 0.00 41.34 4.24
1975 2036 2.721274 AAATGCGCACAAATACAGCA 57.279 40.000 14.90 0.00 42.28 4.41
1976 2037 3.428198 TGAAAAATGCGCACAAATACAGC 59.572 39.130 14.90 0.00 0.00 4.40
1977 2038 4.916831 TCTGAAAAATGCGCACAAATACAG 59.083 37.500 14.90 17.80 0.00 2.74
1978 2039 4.864633 TCTGAAAAATGCGCACAAATACA 58.135 34.783 14.90 8.53 0.00 2.29
1979 2040 6.393720 AATCTGAAAAATGCGCACAAATAC 57.606 33.333 14.90 3.62 0.00 1.89
1980 2041 7.418840 AAAATCTGAAAAATGCGCACAAATA 57.581 28.000 14.90 0.00 0.00 1.40
1981 2042 5.927954 AAATCTGAAAAATGCGCACAAAT 57.072 30.435 14.90 0.00 0.00 2.32
1982 2043 5.731599 AAAATCTGAAAAATGCGCACAAA 57.268 30.435 14.90 0.00 0.00 2.83
1983 2044 5.108065 CGTAAAATCTGAAAAATGCGCACAA 60.108 36.000 14.90 0.00 0.00 3.33
1984 2045 4.381270 CGTAAAATCTGAAAAATGCGCACA 59.619 37.500 14.90 4.51 0.00 4.57
1985 2046 4.615121 TCGTAAAATCTGAAAAATGCGCAC 59.385 37.500 14.90 0.00 0.00 5.34
1986 2047 4.788690 TCGTAAAATCTGAAAAATGCGCA 58.211 34.783 14.96 14.96 0.00 6.09
1987 2048 4.262976 CCTCGTAAAATCTGAAAAATGCGC 59.737 41.667 0.00 0.00 0.00 6.09
1988 2049 4.793216 CCCTCGTAAAATCTGAAAAATGCG 59.207 41.667 0.00 0.00 0.00 4.73
1989 2050 4.562789 GCCCTCGTAAAATCTGAAAAATGC 59.437 41.667 0.00 0.00 0.00 3.56
1990 2051 5.954335 AGCCCTCGTAAAATCTGAAAAATG 58.046 37.500 0.00 0.00 0.00 2.32
1991 2052 6.590234 AAGCCCTCGTAAAATCTGAAAAAT 57.410 33.333 0.00 0.00 0.00 1.82
1992 2053 6.399639 AAAGCCCTCGTAAAATCTGAAAAA 57.600 33.333 0.00 0.00 0.00 1.94
1993 2054 6.399639 AAAAGCCCTCGTAAAATCTGAAAA 57.600 33.333 0.00 0.00 0.00 2.29
1994 2055 6.399639 AAAAAGCCCTCGTAAAATCTGAAA 57.600 33.333 0.00 0.00 0.00 2.69
2024 2085 4.597004 AGCTCCTGTGAAATGATGACATT 58.403 39.130 0.00 0.00 46.99 2.71
2025 2086 4.080469 AGAGCTCCTGTGAAATGATGACAT 60.080 41.667 10.93 0.00 38.50 3.06
2026 2087 3.262660 AGAGCTCCTGTGAAATGATGACA 59.737 43.478 10.93 0.00 0.00 3.58
2027 2088 3.871485 AGAGCTCCTGTGAAATGATGAC 58.129 45.455 10.93 0.00 0.00 3.06
2028 2089 4.259356 CAAGAGCTCCTGTGAAATGATGA 58.741 43.478 10.93 0.00 0.00 2.92
2029 2090 3.377485 CCAAGAGCTCCTGTGAAATGATG 59.623 47.826 10.93 0.00 0.00 3.07
2030 2091 3.265221 TCCAAGAGCTCCTGTGAAATGAT 59.735 43.478 10.93 0.00 0.00 2.45
2031 2092 2.639347 TCCAAGAGCTCCTGTGAAATGA 59.361 45.455 10.93 0.00 0.00 2.57
2032 2093 3.063510 TCCAAGAGCTCCTGTGAAATG 57.936 47.619 10.93 0.00 0.00 2.32
2033 2094 3.522750 AGATCCAAGAGCTCCTGTGAAAT 59.477 43.478 10.93 4.03 0.00 2.17
2034 2095 2.909006 AGATCCAAGAGCTCCTGTGAAA 59.091 45.455 10.93 0.00 0.00 2.69
2035 2096 2.544721 AGATCCAAGAGCTCCTGTGAA 58.455 47.619 10.93 0.00 0.00 3.18
2036 2097 2.244486 AGATCCAAGAGCTCCTGTGA 57.756 50.000 10.93 7.95 0.00 3.58
2037 2098 3.703556 TCTTAGATCCAAGAGCTCCTGTG 59.296 47.826 10.93 6.39 31.01 3.66
2038 2099 3.987745 TCTTAGATCCAAGAGCTCCTGT 58.012 45.455 10.93 0.00 31.01 4.00
2039 2100 4.021192 GGATCTTAGATCCAAGAGCTCCTG 60.021 50.000 30.30 7.89 40.12 3.86
2040 2101 4.159557 GGATCTTAGATCCAAGAGCTCCT 58.840 47.826 30.30 1.27 40.12 3.69
2041 2102 3.900601 TGGATCTTAGATCCAAGAGCTCC 59.099 47.826 34.17 15.07 44.54 4.70
2049 2110 2.038952 CGGCCATTGGATCTTAGATCCA 59.961 50.000 33.07 33.07 45.71 3.41
2050 2111 2.303022 TCGGCCATTGGATCTTAGATCC 59.697 50.000 29.06 29.06 38.66 3.36
2051 2112 3.594134 CTCGGCCATTGGATCTTAGATC 58.406 50.000 13.44 13.44 0.00 2.75
2052 2113 2.289945 GCTCGGCCATTGGATCTTAGAT 60.290 50.000 6.95 0.00 0.00 1.98
2053 2114 1.070758 GCTCGGCCATTGGATCTTAGA 59.929 52.381 6.95 0.00 0.00 2.10
2054 2115 1.071385 AGCTCGGCCATTGGATCTTAG 59.929 52.381 6.95 0.00 0.00 2.18
2055 2116 1.070758 GAGCTCGGCCATTGGATCTTA 59.929 52.381 6.95 0.00 0.00 2.10
2056 2117 0.179034 GAGCTCGGCCATTGGATCTT 60.179 55.000 6.95 0.00 0.00 2.40
2057 2118 1.449353 GAGCTCGGCCATTGGATCT 59.551 57.895 6.95 0.00 0.00 2.75
2058 2119 1.958205 CGAGCTCGGCCATTGGATC 60.958 63.158 28.40 0.00 35.37 3.36
2059 2120 2.109799 CGAGCTCGGCCATTGGAT 59.890 61.111 28.40 0.00 35.37 3.41
2060 2121 4.838152 GCGAGCTCGGCCATTGGA 62.838 66.667 35.10 0.00 40.23 3.53
2062 2123 3.869272 GTGCGAGCTCGGCCATTG 61.869 66.667 35.10 8.21 40.23 2.82
2073 2134 2.890847 CTTAGGTGCTCCCGTGCGAG 62.891 65.000 0.00 0.00 38.74 5.03
2074 2135 2.992689 TTAGGTGCTCCCGTGCGA 60.993 61.111 0.00 0.00 38.74 5.10
2075 2136 2.509336 CTTAGGTGCTCCCGTGCG 60.509 66.667 0.00 0.00 38.74 5.34
2076 2137 2.804828 AAGCTTAGGTGCTCCCGTGC 62.805 60.000 0.00 3.46 43.24 5.34
2077 2138 0.535335 TAAGCTTAGGTGCTCCCGTG 59.465 55.000 0.86 0.00 43.24 4.94
2078 2139 0.824759 CTAAGCTTAGGTGCTCCCGT 59.175 55.000 23.48 0.00 43.24 5.28
2079 2140 0.105039 CCTAAGCTTAGGTGCTCCCG 59.895 60.000 35.30 14.28 44.26 5.14
2088 2149 0.105039 CCGGGAGCACCTAAGCTTAG 59.895 60.000 24.11 24.11 46.75 2.18
2089 2150 0.324923 TCCGGGAGCACCTAAGCTTA 60.325 55.000 5.94 5.94 46.75 3.09
2090 2151 1.612442 TCCGGGAGCACCTAAGCTT 60.612 57.895 3.48 3.48 46.75 3.74
2092 2153 2.501610 CTCCGGGAGCACCTAAGC 59.498 66.667 11.83 0.00 36.97 3.09
2101 2162 1.051812 AATATCAGGTGCTCCGGGAG 58.948 55.000 19.95 19.95 39.05 4.30
2102 2163 1.507140 AAATATCAGGTGCTCCGGGA 58.493 50.000 0.00 5.03 39.05 5.14
2103 2164 2.222027 GAAAATATCAGGTGCTCCGGG 58.778 52.381 0.00 0.00 39.05 5.73
2104 2165 2.222027 GGAAAATATCAGGTGCTCCGG 58.778 52.381 0.00 0.00 39.05 5.14
2105 2166 2.222027 GGGAAAATATCAGGTGCTCCG 58.778 52.381 0.00 0.00 39.05 4.63
2106 2167 2.222027 CGGGAAAATATCAGGTGCTCC 58.778 52.381 0.00 0.00 0.00 4.70
2107 2168 1.604278 GCGGGAAAATATCAGGTGCTC 59.396 52.381 0.00 0.00 0.00 4.26
2108 2169 1.680338 GCGGGAAAATATCAGGTGCT 58.320 50.000 0.00 0.00 0.00 4.40
2109 2170 0.668535 GGCGGGAAAATATCAGGTGC 59.331 55.000 0.00 0.00 0.00 5.01
2110 2171 0.944386 CGGCGGGAAAATATCAGGTG 59.056 55.000 0.00 0.00 0.00 4.00
2111 2172 0.179029 CCGGCGGGAAAATATCAGGT 60.179 55.000 20.56 0.00 34.06 4.00
2112 2173 1.515521 GCCGGCGGGAAAATATCAGG 61.516 60.000 29.48 0.00 34.06 3.86
2113 2174 1.515521 GGCCGGCGGGAAAATATCAG 61.516 60.000 29.48 0.00 34.06 2.90
2114 2175 1.527380 GGCCGGCGGGAAAATATCA 60.527 57.895 29.48 0.00 34.06 2.15
2115 2176 0.035739 TAGGCCGGCGGGAAAATATC 59.964 55.000 29.48 7.80 34.06 1.63
2116 2177 0.036306 CTAGGCCGGCGGGAAAATAT 59.964 55.000 29.48 0.00 34.06 1.28
2117 2178 1.339644 ACTAGGCCGGCGGGAAAATA 61.340 55.000 29.48 3.40 34.06 1.40
2118 2179 2.192175 CTAGGCCGGCGGGAAAAT 59.808 61.111 29.48 2.28 34.06 1.82
2119 2180 3.319441 GACTAGGCCGGCGGGAAAA 62.319 63.158 29.48 0.27 34.06 2.29
2120 2181 3.777910 GACTAGGCCGGCGGGAAA 61.778 66.667 29.48 2.25 34.06 3.13
2122 2183 4.853142 ATGACTAGGCCGGCGGGA 62.853 66.667 29.48 6.89 34.06 5.14
2123 2184 4.609018 CATGACTAGGCCGGCGGG 62.609 72.222 29.48 13.56 0.00 6.13
2124 2185 3.506059 CTCATGACTAGGCCGGCGG 62.506 68.421 24.35 24.35 0.00 6.13
2125 2186 2.016393 TTCTCATGACTAGGCCGGCG 62.016 60.000 22.54 9.65 0.00 6.46
2126 2187 0.178068 TTTCTCATGACTAGGCCGGC 59.822 55.000 21.18 21.18 0.00 6.13
2127 2188 2.168521 TCTTTTCTCATGACTAGGCCGG 59.831 50.000 0.00 0.00 0.00 6.13
2128 2189 3.526931 TCTTTTCTCATGACTAGGCCG 57.473 47.619 0.00 0.00 0.00 6.13
2129 2190 4.819088 GGATTCTTTTCTCATGACTAGGCC 59.181 45.833 0.00 0.00 0.00 5.19
2130 2191 5.526846 CAGGATTCTTTTCTCATGACTAGGC 59.473 44.000 0.00 0.00 0.00 3.93
2131 2192 6.054295 CCAGGATTCTTTTCTCATGACTAGG 58.946 44.000 0.00 0.00 0.00 3.02
2132 2193 6.882656 TCCAGGATTCTTTTCTCATGACTAG 58.117 40.000 0.00 0.00 0.00 2.57
2201 2262 5.786121 AAGATTCTTCCTTCCAGATCCAA 57.214 39.130 0.00 0.00 0.00 3.53
2226 2287 5.914033 TCTCTTTTCTCCACTTTCTTTCGA 58.086 37.500 0.00 0.00 0.00 3.71
2254 2315 4.142838 GCAACTGAAATTAAAATGCCAGCC 60.143 41.667 0.00 0.00 0.00 4.85
2333 2394 5.790495 CGTTGCAGCAAAATACTCTAAAGAC 59.210 40.000 10.11 0.00 0.00 3.01
2339 2400 2.350772 GCACGTTGCAGCAAAATACTCT 60.351 45.455 10.11 0.00 44.26 3.24
2404 2473 1.150827 GGAAATTTGCTGGTTGCTGC 58.849 50.000 1.93 0.00 43.37 5.25
2406 2475 2.560105 GAGAGGAAATTTGCTGGTTGCT 59.440 45.455 17.69 7.23 43.37 3.91
2426 2495 0.521867 CTGTCCGCGAACGAATACGA 60.522 55.000 8.23 0.00 43.93 3.43
2427 2496 1.469126 CCTGTCCGCGAACGAATACG 61.469 60.000 8.23 0.00 43.93 3.06
2441 2510 1.831652 CAGTGGACTGGTCCCCTGTC 61.832 65.000 19.34 10.77 46.07 3.51
2450 2519 3.367806 CCGCATCTATATCAGTGGACTGG 60.368 52.174 6.94 0.00 43.91 4.00
2451 2520 3.367806 CCCGCATCTATATCAGTGGACTG 60.368 52.174 0.00 0.00 45.08 3.51
2452 2521 2.828520 CCCGCATCTATATCAGTGGACT 59.171 50.000 0.00 0.00 33.57 3.85
2453 2522 2.826128 TCCCGCATCTATATCAGTGGAC 59.174 50.000 0.00 0.00 33.57 4.02
2454 2523 3.092301 CTCCCGCATCTATATCAGTGGA 58.908 50.000 0.00 0.00 33.57 4.02
2455 2524 2.167281 CCTCCCGCATCTATATCAGTGG 59.833 54.545 0.00 0.00 0.00 4.00
2456 2525 2.417924 GCCTCCCGCATCTATATCAGTG 60.418 54.545 0.00 0.00 37.47 3.66
2457 2526 1.827969 GCCTCCCGCATCTATATCAGT 59.172 52.381 0.00 0.00 37.47 3.41
2458 2527 1.827344 TGCCTCCCGCATCTATATCAG 59.173 52.381 0.00 0.00 44.64 2.90
2459 2528 1.937191 TGCCTCCCGCATCTATATCA 58.063 50.000 0.00 0.00 44.64 2.15
2487 2558 4.464951 TGGCTAACATATACAGGATACGGG 59.535 45.833 0.00 0.00 46.39 5.28
2506 2577 9.101655 GCATATTTGAATTTGAATTTACTGGCT 57.898 29.630 0.00 0.00 0.00 4.75
2508 2579 9.086336 ACGCATATTTGAATTTGAATTTACTGG 57.914 29.630 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.