Multiple sequence alignment - TraesCS5B01G147200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G147200 chr5B 100.000 4101 0 0 1 4101 275269658 275265558 0.000000e+00 7574.0
1 TraesCS5B01G147200 chr5B 96.685 181 6 0 1 181 275294394 275294214 6.660000e-78 302.0
2 TraesCS5B01G147200 chr5B 96.133 181 7 0 1 181 164569585 164569765 3.100000e-76 296.0
3 TraesCS5B01G147200 chr5B 95.187 187 9 0 1 187 506990363 506990177 3.100000e-76 296.0
4 TraesCS5B01G147200 chr5B 90.123 162 14 2 489 650 275296374 275296215 4.150000e-50 209.0
5 TraesCS5B01G147200 chr5B 95.349 43 2 0 278 320 275269242 275269200 7.360000e-08 69.4
6 TraesCS5B01G147200 chr5A 92.382 1549 79 15 1821 3350 326057406 326055878 0.000000e+00 2170.0
7 TraesCS5B01G147200 chr5A 89.577 1372 40 25 435 1735 326058891 326057552 0.000000e+00 1646.0
8 TraesCS5B01G147200 chr5A 95.154 227 10 1 3876 4101 217146511 217146285 1.400000e-94 357.0
9 TraesCS5B01G147200 chr5A 86.498 237 30 1 3640 3876 326055587 326055353 4.070000e-65 259.0
10 TraesCS5B01G147200 chr5A 79.167 216 38 7 1232 1444 535240200 535240411 4.270000e-30 143.0
11 TraesCS5B01G147200 chr5A 75.000 244 42 15 3640 3881 441097006 441096780 1.210000e-15 95.3
12 TraesCS5B01G147200 chr5A 100.000 29 0 0 1770 1798 326057469 326057441 2.000000e-03 54.7
13 TraesCS5B01G147200 chr5D 96.429 1008 35 1 2637 3644 230506731 230507737 0.000000e+00 1661.0
14 TraesCS5B01G147200 chr5D 91.057 1107 33 16 396 1473 230504516 230505585 0.000000e+00 1435.0
15 TraesCS5B01G147200 chr5D 93.216 796 31 11 1478 2255 230505627 230506417 0.000000e+00 1149.0
16 TraesCS5B01G147200 chr5D 91.361 463 35 3 3640 4101 230507787 230508245 2.690000e-176 628.0
17 TraesCS5B01G147200 chr5D 93.403 288 16 3 2353 2640 230506418 230506702 1.360000e-114 424.0
18 TraesCS5B01G147200 chr5D 94.298 228 11 2 3876 4101 156586492 156586265 8.440000e-92 348.0
19 TraesCS5B01G147200 chr5D 88.073 109 10 3 175 282 230504001 230504107 4.300000e-25 126.0
20 TraesCS5B01G147200 chr5D 78.613 173 29 5 3710 3878 551828571 551828739 1.560000e-19 108.0
21 TraesCS5B01G147200 chr5D 96.078 51 2 0 404 454 449053578 449053628 2.630000e-12 84.2
22 TraesCS5B01G147200 chr5D 100.000 35 0 0 280 314 3979365 3979331 9.520000e-07 65.8
23 TraesCS5B01G147200 chr5D 100.000 35 0 0 280 314 78010264 78010230 9.520000e-07 65.8
24 TraesCS5B01G147200 chrUn 96.476 227 7 1 3876 4101 108422477 108422703 1.390000e-99 374.0
25 TraesCS5B01G147200 chrUn 96.078 51 2 0 404 454 70363859 70363909 2.630000e-12 84.2
26 TraesCS5B01G147200 chrUn 100.000 35 0 0 280 314 70363874 70363908 9.520000e-07 65.8
27 TraesCS5B01G147200 chrUn 100.000 35 0 0 280 314 77495613 77495647 9.520000e-07 65.8
28 TraesCS5B01G147200 chr3D 96.053 228 7 2 3876 4101 251690061 251689834 1.800000e-98 370.0
29 TraesCS5B01G147200 chr3D 79.008 262 45 6 3387 3644 425171962 425172217 1.960000e-38 171.0
30 TraesCS5B01G147200 chr3D 76.068 234 47 9 3416 3644 100178836 100178607 3.350000e-21 113.0
31 TraesCS5B01G147200 chr4D 77.866 628 113 21 1085 1695 97957977 97958595 2.330000e-97 366.0
32 TraesCS5B01G147200 chr4D 77.636 626 109 25 1087 1695 97720684 97721295 6.520000e-93 351.0
33 TraesCS5B01G147200 chr4D 78.892 379 72 7 1069 1443 97508655 97509029 2.450000e-62 250.0
34 TraesCS5B01G147200 chr4D 77.288 295 60 7 3356 3645 49886816 49887108 2.540000e-37 167.0
35 TraesCS5B01G147200 chr4D 79.330 179 35 2 1241 1418 394361889 394362066 1.550000e-24 124.0
36 TraesCS5B01G147200 chr4B 77.830 636 107 24 1069 1695 139399173 139399783 3.010000e-96 363.0
37 TraesCS5B01G147200 chr4B 77.673 636 107 24 1069 1695 139472318 139472927 5.040000e-94 355.0
38 TraesCS5B01G147200 chr4B 77.673 636 107 24 1069 1695 139510766 139511375 5.040000e-94 355.0
39 TraesCS5B01G147200 chr4B 96.133 181 7 0 1 181 664822547 664822367 3.100000e-76 296.0
40 TraesCS5B01G147200 chr4B 77.963 481 83 16 1214 1689 139511506 139511968 3.120000e-71 279.0
41 TraesCS5B01G147200 chr4B 79.498 239 44 5 3634 3870 15432481 15432716 9.120000e-37 165.0
42 TraesCS5B01G147200 chr4B 79.888 179 34 2 1241 1418 483951293 483951470 3.330000e-26 130.0
43 TraesCS5B01G147200 chr7A 95.175 228 9 2 3876 4101 167928702 167928929 3.900000e-95 359.0
44 TraesCS5B01G147200 chr7A 95.122 41 1 1 278 317 721664199 721664159 3.420000e-06 63.9
45 TraesCS5B01G147200 chr3B 94.714 227 11 1 3876 4101 263803335 263803109 6.520000e-93 351.0
46 TraesCS5B01G147200 chr3B 95.187 187 9 0 1 187 332506751 332506565 3.100000e-76 296.0
47 TraesCS5B01G147200 chr3B 95.187 187 9 0 1 187 447036962 447036776 3.100000e-76 296.0
48 TraesCS5B01G147200 chr3A 94.714 227 11 1 3876 4101 737582678 737582452 6.520000e-93 351.0
49 TraesCS5B01G147200 chr3A 94.643 56 2 1 401 455 746052338 746052393 7.300000e-13 86.1
50 TraesCS5B01G147200 chr3A 80.198 101 20 0 3778 3878 684871509 684871609 4.400000e-10 76.8
51 TraesCS5B01G147200 chr3A 80.198 101 20 0 3778 3878 684872254 684872354 4.400000e-10 76.8
52 TraesCS5B01G147200 chr4A 77.389 628 115 22 1087 1695 478339981 478339362 8.440000e-92 348.0
53 TraesCS5B01G147200 chr4A 77.338 631 110 23 1087 1695 478302678 478302059 3.930000e-90 342.0
54 TraesCS5B01G147200 chr4A 81.766 351 58 5 1085 1432 478219654 478219307 5.190000e-74 289.0
55 TraesCS5B01G147200 chr4A 79.000 100 20 1 3641 3740 124354443 124354345 2.650000e-07 67.6
56 TraesCS5B01G147200 chr1D 94.273 227 12 1 3876 4101 270277107 270277333 3.030000e-91 346.0
57 TraesCS5B01G147200 chr1D 78.788 198 38 4 1222 1417 467611830 467611635 3.330000e-26 130.0
58 TraesCS5B01G147200 chr1D 76.250 240 57 0 3640 3879 419025793 419025554 1.200000e-25 128.0
59 TraesCS5B01G147200 chr1D 75.918 245 57 2 3634 3878 488978822 488978580 1.550000e-24 124.0
60 TraesCS5B01G147200 chr1D 100.000 35 0 0 280 314 426388458 426388492 9.520000e-07 65.8
61 TraesCS5B01G147200 chr7B 95.722 187 7 1 1 186 586114812 586114998 2.400000e-77 300.0
62 TraesCS5B01G147200 chr7B 74.157 178 43 3 3694 3869 708531788 708531964 2.050000e-08 71.3
63 TraesCS5B01G147200 chr6B 96.133 181 7 0 1 181 311533529 311533349 3.100000e-76 296.0
64 TraesCS5B01G147200 chr1B 93.782 193 10 1 1 193 411780917 411781107 5.190000e-74 289.0
65 TraesCS5B01G147200 chr1B 92.857 56 3 1 404 459 539141298 539141352 3.400000e-11 80.5
66 TraesCS5B01G147200 chr2B 96.429 56 1 1 404 459 657085566 657085512 1.570000e-14 91.6
67 TraesCS5B01G147200 chr2D 98.039 51 1 0 404 454 168964782 168964732 5.650000e-14 89.8
68 TraesCS5B01G147200 chr2D 94.643 56 2 1 400 454 618335241 618335186 7.300000e-13 86.1
69 TraesCS5B01G147200 chr2D 94.545 55 2 1 401 454 32068190 32068136 2.630000e-12 84.2
70 TraesCS5B01G147200 chr6D 100.000 35 0 0 280 314 467991146 467991112 9.520000e-07 65.8
71 TraesCS5B01G147200 chr2A 91.667 48 1 2 267 314 774311310 774311354 3.420000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G147200 chr5B 275265558 275269658 4100 True 3821.700000 7574 97.67450 1 4101 2 chr5B.!!$R2 4100
1 TraesCS5B01G147200 chr5B 275294214 275296374 2160 True 255.500000 302 93.40400 1 650 2 chr5B.!!$R3 649
2 TraesCS5B01G147200 chr5A 326055353 326058891 3538 True 1032.425000 2170 92.11425 435 3876 4 chr5A.!!$R3 3441
3 TraesCS5B01G147200 chr5D 230504001 230508245 4244 False 903.833333 1661 92.25650 175 4101 6 chr5D.!!$F3 3926
4 TraesCS5B01G147200 chr4D 97957977 97958595 618 False 366.000000 366 77.86600 1085 1695 1 chr4D.!!$F4 610
5 TraesCS5B01G147200 chr4D 97720684 97721295 611 False 351.000000 351 77.63600 1087 1695 1 chr4D.!!$F3 608
6 TraesCS5B01G147200 chr4B 139399173 139399783 610 False 363.000000 363 77.83000 1069 1695 1 chr4B.!!$F2 626
7 TraesCS5B01G147200 chr4B 139472318 139472927 609 False 355.000000 355 77.67300 1069 1695 1 chr4B.!!$F3 626
8 TraesCS5B01G147200 chr4B 139510766 139511968 1202 False 317.000000 355 77.81800 1069 1695 2 chr4B.!!$F5 626
9 TraesCS5B01G147200 chr4A 478339362 478339981 619 True 348.000000 348 77.38900 1087 1695 1 chr4A.!!$R4 608
10 TraesCS5B01G147200 chr4A 478302059 478302678 619 True 342.000000 342 77.33800 1087 1695 1 chr4A.!!$R3 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 74 0.101939 CGCTTCCCCTTACGGTCTAC 59.898 60.0 0.00 0.00 0.00 2.59 F
306 307 0.107165 GCCCCTACACCCTCATGAAC 60.107 60.0 0.00 0.00 0.00 3.18 F
424 777 0.399075 AAGGTGTAACAGTTCCCGGG 59.601 55.0 16.85 16.85 39.98 5.73 F
1722 3385 0.107017 CCACCCATCGCTCAAAGGAT 60.107 55.0 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1031 1424 0.102481 ACTACTAGCGTTCATGCCGG 59.898 55.0 0.00 0.00 34.65 6.13 R
1484 2698 0.804364 ATGCATGTCGTTCGTTGCAT 59.196 45.0 18.53 18.53 38.05 3.96 R
2332 4071 0.734889 CACGGCCAGCTTTATCCTTG 59.265 55.0 2.24 0.00 0.00 3.61 R
3586 5551 0.029567 CGAACTCGAGAAGGATCCGG 59.970 60.0 21.68 0.00 43.02 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
23 24 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
24 25 0.381089 ATCGGTCGGATCGTGAAGAC 59.619 55.000 10.85 0.00 0.00 3.01
26 27 1.505353 GGTCGGATCGTGAAGACGT 59.495 57.895 0.00 0.00 46.20 4.34
27 28 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
28 29 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
29 30 1.129251 GTCGGATCGTGAAGACGTACA 59.871 52.381 0.00 0.00 46.20 2.90
30 31 1.805943 TCGGATCGTGAAGACGTACAA 59.194 47.619 0.00 0.00 46.20 2.41
31 32 1.909532 CGGATCGTGAAGACGTACAAC 59.090 52.381 0.00 0.00 46.20 3.32
32 33 2.413765 CGGATCGTGAAGACGTACAACT 60.414 50.000 0.00 0.00 46.20 3.16
33 34 3.181517 CGGATCGTGAAGACGTACAACTA 60.182 47.826 0.00 0.00 46.20 2.24
34 35 4.495349 CGGATCGTGAAGACGTACAACTAT 60.495 45.833 0.00 0.00 46.20 2.12
35 36 5.277011 CGGATCGTGAAGACGTACAACTATA 60.277 44.000 0.00 0.00 46.20 1.31
36 37 6.565435 CGGATCGTGAAGACGTACAACTATAT 60.565 42.308 0.00 0.00 46.20 0.86
37 38 6.796072 GGATCGTGAAGACGTACAACTATATC 59.204 42.308 0.00 0.00 46.20 1.63
38 39 6.667007 TCGTGAAGACGTACAACTATATCA 57.333 37.500 0.00 0.00 46.20 2.15
39 40 7.075674 TCGTGAAGACGTACAACTATATCAA 57.924 36.000 0.00 0.00 46.20 2.57
40 41 6.963242 TCGTGAAGACGTACAACTATATCAAC 59.037 38.462 0.00 0.00 46.20 3.18
41 42 6.195983 CGTGAAGACGTACAACTATATCAACC 59.804 42.308 0.00 0.00 40.91 3.77
42 43 6.195983 GTGAAGACGTACAACTATATCAACCG 59.804 42.308 0.00 0.00 0.00 4.44
43 44 4.604976 AGACGTACAACTATATCAACCGC 58.395 43.478 0.00 0.00 0.00 5.68
44 45 3.365832 ACGTACAACTATATCAACCGCG 58.634 45.455 0.00 0.00 0.00 6.46
45 46 3.181497 ACGTACAACTATATCAACCGCGT 60.181 43.478 4.92 0.00 0.00 6.01
46 47 3.792956 CGTACAACTATATCAACCGCGTT 59.207 43.478 4.92 0.00 0.00 4.84
47 48 4.316861 CGTACAACTATATCAACCGCGTTG 60.317 45.833 4.92 10.14 43.99 4.10
48 49 3.592059 ACAACTATATCAACCGCGTTGT 58.408 40.909 16.97 9.25 43.23 3.32
49 50 3.615496 ACAACTATATCAACCGCGTTGTC 59.385 43.478 16.97 0.00 43.23 3.18
50 51 3.513680 ACTATATCAACCGCGTTGTCA 57.486 42.857 16.97 9.39 43.23 3.58
51 52 4.054780 ACTATATCAACCGCGTTGTCAT 57.945 40.909 16.97 13.93 43.23 3.06
52 53 5.190992 ACTATATCAACCGCGTTGTCATA 57.809 39.130 16.97 14.19 43.23 2.15
53 54 5.593968 ACTATATCAACCGCGTTGTCATAA 58.406 37.500 16.97 2.99 43.23 1.90
54 55 4.789095 ATATCAACCGCGTTGTCATAAC 57.211 40.909 16.97 0.00 43.23 1.89
55 56 0.785378 TCAACCGCGTTGTCATAACG 59.215 50.000 16.97 1.71 43.23 3.18
62 63 0.725117 CGTTGTCATAACGCTTCCCC 59.275 55.000 0.00 0.00 36.82 4.81
63 64 1.674817 CGTTGTCATAACGCTTCCCCT 60.675 52.381 0.00 0.00 36.82 4.79
64 65 2.433436 GTTGTCATAACGCTTCCCCTT 58.567 47.619 0.00 0.00 0.00 3.95
65 66 3.602483 GTTGTCATAACGCTTCCCCTTA 58.398 45.455 0.00 0.00 0.00 2.69
66 67 3.255969 TGTCATAACGCTTCCCCTTAC 57.744 47.619 0.00 0.00 0.00 2.34
67 68 2.199236 GTCATAACGCTTCCCCTTACG 58.801 52.381 0.00 0.00 0.00 3.18
68 69 1.137479 TCATAACGCTTCCCCTTACGG 59.863 52.381 0.00 0.00 0.00 4.02
69 70 1.134610 CATAACGCTTCCCCTTACGGT 60.135 52.381 0.00 0.00 0.00 4.83
70 71 0.532115 TAACGCTTCCCCTTACGGTC 59.468 55.000 0.00 0.00 0.00 4.79
71 72 1.190178 AACGCTTCCCCTTACGGTCT 61.190 55.000 0.00 0.00 0.00 3.85
72 73 0.323725 ACGCTTCCCCTTACGGTCTA 60.324 55.000 0.00 0.00 0.00 2.59
73 74 0.101939 CGCTTCCCCTTACGGTCTAC 59.898 60.000 0.00 0.00 0.00 2.59
78 79 2.412605 CCCTTACGGTCTACGAGGG 58.587 63.158 0.00 0.00 46.43 4.30
79 80 0.394899 CCCTTACGGTCTACGAGGGT 60.395 60.000 5.61 0.00 46.43 4.34
80 81 1.134098 CCCTTACGGTCTACGAGGGTA 60.134 57.143 5.61 0.00 46.43 3.69
81 82 3.323922 CCCTTACGGTCTACGAGGGTAC 61.324 59.091 5.61 0.00 46.43 3.34
82 83 5.815010 CCCTTACGGTCTACGAGGGTACA 62.815 56.522 5.61 0.00 46.43 2.90
86 87 2.062971 GGTCTACGAGGGTACATGGA 57.937 55.000 0.00 0.00 0.00 3.41
87 88 1.680207 GGTCTACGAGGGTACATGGAC 59.320 57.143 0.00 0.00 0.00 4.02
88 89 2.372264 GTCTACGAGGGTACATGGACA 58.628 52.381 10.99 0.00 0.00 4.02
89 90 2.756760 GTCTACGAGGGTACATGGACAA 59.243 50.000 10.99 0.00 0.00 3.18
90 91 3.383825 GTCTACGAGGGTACATGGACAAT 59.616 47.826 10.99 0.00 0.00 2.71
91 92 4.581824 GTCTACGAGGGTACATGGACAATA 59.418 45.833 10.99 0.00 0.00 1.90
92 93 3.814005 ACGAGGGTACATGGACAATAC 57.186 47.619 10.99 0.00 0.00 1.89
93 94 3.371965 ACGAGGGTACATGGACAATACT 58.628 45.455 10.99 1.85 0.00 2.12
94 95 3.383825 ACGAGGGTACATGGACAATACTC 59.616 47.826 10.99 10.28 0.00 2.59
95 96 3.637229 CGAGGGTACATGGACAATACTCT 59.363 47.826 10.99 1.11 32.17 3.24
96 97 4.261656 CGAGGGTACATGGACAATACTCTC 60.262 50.000 10.99 9.97 41.26 3.20
97 98 3.967987 AGGGTACATGGACAATACTCTCC 59.032 47.826 10.99 0.00 0.00 3.71
98 99 3.071167 GGGTACATGGACAATACTCTCCC 59.929 52.174 10.99 0.00 0.00 4.30
99 100 3.071167 GGTACATGGACAATACTCTCCCC 59.929 52.174 10.99 0.00 0.00 4.81
100 101 3.136641 ACATGGACAATACTCTCCCCT 57.863 47.619 0.00 0.00 0.00 4.79
101 102 3.041946 ACATGGACAATACTCTCCCCTC 58.958 50.000 0.00 0.00 0.00 4.30
102 103 3.310954 ACATGGACAATACTCTCCCCTCT 60.311 47.826 0.00 0.00 0.00 3.69
103 104 3.033659 TGGACAATACTCTCCCCTCTC 57.966 52.381 0.00 0.00 0.00 3.20
104 105 1.957877 GGACAATACTCTCCCCTCTCG 59.042 57.143 0.00 0.00 0.00 4.04
105 106 2.657143 GACAATACTCTCCCCTCTCGT 58.343 52.381 0.00 0.00 0.00 4.18
106 107 3.025262 GACAATACTCTCCCCTCTCGTT 58.975 50.000 0.00 0.00 0.00 3.85
107 108 2.761208 ACAATACTCTCCCCTCTCGTTG 59.239 50.000 0.00 0.00 0.00 4.10
108 109 1.404843 ATACTCTCCCCTCTCGTTGC 58.595 55.000 0.00 0.00 0.00 4.17
109 110 0.331954 TACTCTCCCCTCTCGTTGCT 59.668 55.000 0.00 0.00 0.00 3.91
110 111 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
111 112 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
112 113 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
113 114 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
114 115 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
115 116 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
116 117 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
117 118 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
118 119 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
119 120 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
120 121 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
121 122 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
122 123 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
123 124 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
124 125 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
125 126 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
126 127 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
127 128 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
128 129 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
129 130 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
130 131 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
131 132 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
132 133 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
133 134 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
134 135 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
135 136 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
147 148 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
168 169 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
169 170 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
170 171 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
171 172 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
172 173 5.374921 TGAAATTACTACGTTCCCCAACAA 58.625 37.500 0.00 0.00 32.14 2.83
173 174 6.005198 TGAAATTACTACGTTCCCCAACAAT 58.995 36.000 0.00 0.00 32.14 2.71
174 175 6.149807 TGAAATTACTACGTTCCCCAACAATC 59.850 38.462 0.00 0.00 32.14 2.67
175 176 2.484742 ACTACGTTCCCCAACAATCC 57.515 50.000 0.00 0.00 32.14 3.01
176 177 1.003928 ACTACGTTCCCCAACAATCCC 59.996 52.381 0.00 0.00 32.14 3.85
177 178 1.003812 CTACGTTCCCCAACAATCCCA 59.996 52.381 0.00 0.00 32.14 4.37
178 179 0.407918 ACGTTCCCCAACAATCCCAT 59.592 50.000 0.00 0.00 32.14 4.00
179 180 1.102978 CGTTCCCCAACAATCCCATC 58.897 55.000 0.00 0.00 32.14 3.51
180 181 1.485124 GTTCCCCAACAATCCCATCC 58.515 55.000 0.00 0.00 32.14 3.51
181 182 0.338120 TTCCCCAACAATCCCATCCC 59.662 55.000 0.00 0.00 0.00 3.85
182 183 0.853134 TCCCCAACAATCCCATCCCA 60.853 55.000 0.00 0.00 0.00 4.37
189 190 0.557238 CAATCCCATCCCATCCACCA 59.443 55.000 0.00 0.00 0.00 4.17
226 227 1.075659 GAGCAGGCCTCCAAAACCT 59.924 57.895 0.00 0.00 34.35 3.50
227 228 0.962855 GAGCAGGCCTCCAAAACCTC 60.963 60.000 0.00 0.00 34.35 3.85
228 229 2.335712 GCAGGCCTCCAAAACCTCG 61.336 63.158 0.00 0.00 0.00 4.63
231 232 2.034221 GCCTCCAAAACCTCGCCT 59.966 61.111 0.00 0.00 0.00 5.52
232 233 2.041115 GCCTCCAAAACCTCGCCTC 61.041 63.158 0.00 0.00 0.00 4.70
237 238 1.160137 CCAAAACCTCGCCTCTTGAG 58.840 55.000 0.00 0.00 0.00 3.02
241 242 0.457851 AACCTCGCCTCTTGAGATCG 59.542 55.000 0.00 3.09 35.43 3.69
246 247 2.292016 CTCGCCTCTTGAGATCGTGTAT 59.708 50.000 0.00 0.00 35.43 2.29
256 257 2.294791 GAGATCGTGTATGGGAGAGGTG 59.705 54.545 0.00 0.00 0.00 4.00
269 270 3.344515 GGAGAGGTGCGATTAGGTTTTT 58.655 45.455 0.00 0.00 0.00 1.94
271 272 4.000988 GAGAGGTGCGATTAGGTTTTTGA 58.999 43.478 0.00 0.00 0.00 2.69
273 274 3.081804 AGGTGCGATTAGGTTTTTGAGG 58.918 45.455 0.00 0.00 0.00 3.86
274 275 3.078837 GGTGCGATTAGGTTTTTGAGGA 58.921 45.455 0.00 0.00 0.00 3.71
275 276 3.127030 GGTGCGATTAGGTTTTTGAGGAG 59.873 47.826 0.00 0.00 0.00 3.69
276 277 2.747446 TGCGATTAGGTTTTTGAGGAGC 59.253 45.455 0.00 0.00 0.00 4.70
277 278 2.223044 GCGATTAGGTTTTTGAGGAGCG 60.223 50.000 0.00 0.00 0.00 5.03
278 279 3.000727 CGATTAGGTTTTTGAGGAGCGT 58.999 45.455 0.00 0.00 0.00 5.07
282 283 0.596577 GGTTTTTGAGGAGCGTTCCC 59.403 55.000 15.45 7.23 45.24 3.97
283 284 0.237498 GTTTTTGAGGAGCGTTCCCG 59.763 55.000 15.45 0.00 45.24 5.14
284 285 0.887387 TTTTTGAGGAGCGTTCCCGG 60.887 55.000 15.45 0.00 45.24 5.73
302 303 3.741325 GTGCCCCTACACCCTCAT 58.259 61.111 0.00 0.00 34.35 2.90
303 304 1.224592 GTGCCCCTACACCCTCATG 59.775 63.158 0.00 0.00 34.35 3.07
304 305 1.082019 TGCCCCTACACCCTCATGA 59.918 57.895 0.00 0.00 0.00 3.07
305 306 0.548926 TGCCCCTACACCCTCATGAA 60.549 55.000 0.00 0.00 0.00 2.57
306 307 0.107165 GCCCCTACACCCTCATGAAC 60.107 60.000 0.00 0.00 0.00 3.18
307 308 1.285280 CCCCTACACCCTCATGAACA 58.715 55.000 0.00 0.00 0.00 3.18
308 309 1.210478 CCCCTACACCCTCATGAACAG 59.790 57.143 0.00 0.00 0.00 3.16
309 310 1.909302 CCCTACACCCTCATGAACAGT 59.091 52.381 0.00 0.00 0.00 3.55
310 311 3.104512 CCCTACACCCTCATGAACAGTA 58.895 50.000 0.00 0.00 0.00 2.74
311 312 3.517901 CCCTACACCCTCATGAACAGTAA 59.482 47.826 0.00 0.00 0.00 2.24
312 313 4.019681 CCCTACACCCTCATGAACAGTAAA 60.020 45.833 0.00 0.00 0.00 2.01
313 314 5.339200 CCCTACACCCTCATGAACAGTAAAT 60.339 44.000 0.00 0.00 0.00 1.40
314 315 5.586243 CCTACACCCTCATGAACAGTAAATG 59.414 44.000 0.00 0.00 0.00 2.32
315 316 5.241403 ACACCCTCATGAACAGTAAATGA 57.759 39.130 0.00 0.00 0.00 2.57
316 317 5.630121 ACACCCTCATGAACAGTAAATGAA 58.370 37.500 0.00 0.00 30.28 2.57
317 318 5.707298 ACACCCTCATGAACAGTAAATGAAG 59.293 40.000 0.00 0.00 30.28 3.02
318 319 5.707298 CACCCTCATGAACAGTAAATGAAGT 59.293 40.000 0.00 0.00 30.28 3.01
319 320 6.878923 CACCCTCATGAACAGTAAATGAAGTA 59.121 38.462 0.00 0.00 30.28 2.24
320 321 7.065085 CACCCTCATGAACAGTAAATGAAGTAG 59.935 40.741 0.00 0.00 30.28 2.57
321 322 7.038302 ACCCTCATGAACAGTAAATGAAGTAGA 60.038 37.037 0.00 0.00 30.28 2.59
322 323 7.278868 CCCTCATGAACAGTAAATGAAGTAGAC 59.721 40.741 0.00 0.00 30.28 2.59
323 324 7.819415 CCTCATGAACAGTAAATGAAGTAGACA 59.181 37.037 0.00 0.00 30.28 3.41
324 325 9.208022 CTCATGAACAGTAAATGAAGTAGACAA 57.792 33.333 0.00 0.00 30.28 3.18
325 326 9.554395 TCATGAACAGTAAATGAAGTAGACAAA 57.446 29.630 0.00 0.00 0.00 2.83
326 327 9.599322 CATGAACAGTAAATGAAGTAGACAAAC 57.401 33.333 0.00 0.00 0.00 2.93
327 328 7.847487 TGAACAGTAAATGAAGTAGACAAACG 58.153 34.615 0.00 0.00 0.00 3.60
328 329 7.493320 TGAACAGTAAATGAAGTAGACAAACGT 59.507 33.333 0.00 0.00 0.00 3.99
329 330 8.876275 AACAGTAAATGAAGTAGACAAACGTA 57.124 30.769 0.00 0.00 0.00 3.57
330 331 8.516811 ACAGTAAATGAAGTAGACAAACGTAG 57.483 34.615 0.00 0.00 0.00 3.51
331 332 8.355169 ACAGTAAATGAAGTAGACAAACGTAGA 58.645 33.333 0.00 0.00 0.00 2.59
332 333 9.355215 CAGTAAATGAAGTAGACAAACGTAGAT 57.645 33.333 0.00 0.00 0.00 1.98
333 334 9.355215 AGTAAATGAAGTAGACAAACGTAGATG 57.645 33.333 0.00 0.00 0.00 2.90
334 335 9.350357 GTAAATGAAGTAGACAAACGTAGATGA 57.650 33.333 0.00 0.00 0.00 2.92
335 336 8.827177 AAATGAAGTAGACAAACGTAGATGAA 57.173 30.769 0.00 0.00 0.00 2.57
336 337 8.467402 AATGAAGTAGACAAACGTAGATGAAG 57.533 34.615 0.00 0.00 0.00 3.02
337 338 6.978338 TGAAGTAGACAAACGTAGATGAAGT 58.022 36.000 0.00 0.00 0.00 3.01
338 339 8.102800 TGAAGTAGACAAACGTAGATGAAGTA 57.897 34.615 0.00 0.00 0.00 2.24
339 340 8.737175 TGAAGTAGACAAACGTAGATGAAGTAT 58.263 33.333 0.00 0.00 0.00 2.12
340 341 9.570488 GAAGTAGACAAACGTAGATGAAGTATT 57.430 33.333 0.00 0.00 0.00 1.89
341 342 8.912787 AGTAGACAAACGTAGATGAAGTATTG 57.087 34.615 0.00 0.00 0.00 1.90
342 343 7.974501 AGTAGACAAACGTAGATGAAGTATTGG 59.025 37.037 0.00 0.00 0.00 3.16
343 344 6.931838 AGACAAACGTAGATGAAGTATTGGA 58.068 36.000 0.00 0.00 0.00 3.53
344 345 7.383687 AGACAAACGTAGATGAAGTATTGGAA 58.616 34.615 0.00 0.00 0.00 3.53
345 346 7.876068 AGACAAACGTAGATGAAGTATTGGAAA 59.124 33.333 0.00 0.00 0.00 3.13
346 347 8.029642 ACAAACGTAGATGAAGTATTGGAAAG 57.970 34.615 0.00 0.00 0.00 2.62
347 348 7.119262 ACAAACGTAGATGAAGTATTGGAAAGG 59.881 37.037 0.00 0.00 0.00 3.11
348 349 6.295719 ACGTAGATGAAGTATTGGAAAGGT 57.704 37.500 0.00 0.00 0.00 3.50
349 350 6.106673 ACGTAGATGAAGTATTGGAAAGGTG 58.893 40.000 0.00 0.00 0.00 4.00
350 351 6.070995 ACGTAGATGAAGTATTGGAAAGGTGA 60.071 38.462 0.00 0.00 0.00 4.02
351 352 6.816640 CGTAGATGAAGTATTGGAAAGGTGAA 59.183 38.462 0.00 0.00 0.00 3.18
352 353 7.010552 CGTAGATGAAGTATTGGAAAGGTGAAG 59.989 40.741 0.00 0.00 0.00 3.02
353 354 6.183347 AGATGAAGTATTGGAAAGGTGAAGG 58.817 40.000 0.00 0.00 0.00 3.46
356 357 2.304761 AGTATTGGAAAGGTGAAGGCGA 59.695 45.455 0.00 0.00 0.00 5.54
383 384 7.328493 TGTTTGTCTACTTCATCTACATTGTCG 59.672 37.037 0.00 0.00 0.00 4.35
392 393 1.542472 TCTACATTGTCGTCGCCTTCA 59.458 47.619 0.00 0.00 0.00 3.02
402 755 1.278238 GTCGCCTTCACCGAGTATTG 58.722 55.000 0.00 0.00 35.11 1.90
419 772 6.128634 CGAGTATTGGAAAGGTGTAACAGTTC 60.129 42.308 0.00 0.00 39.98 3.01
422 775 2.148768 GGAAAGGTGTAACAGTTCCCG 58.851 52.381 0.00 0.00 42.37 5.14
424 777 0.399075 AAGGTGTAACAGTTCCCGGG 59.601 55.000 16.85 16.85 39.98 5.73
545 910 3.827008 TCTCAGGTGTTATGGCATCTC 57.173 47.619 1.65 0.00 0.00 2.75
672 1041 2.862530 GCAGCTTTATCGTCGCCTGATA 60.863 50.000 0.00 0.00 0.00 2.15
796 1165 2.216750 TACGTGCCCTAGACAACGGC 62.217 60.000 0.00 7.74 43.32 5.68
844 1213 2.307098 AGAGAGTTGGTGGGAAAGATGG 59.693 50.000 0.00 0.00 0.00 3.51
888 1281 7.473735 TTTGCCACCACAAATAATTCATCTA 57.526 32.000 0.00 0.00 34.68 1.98
975 1368 3.110868 CTGCACTGCACACGCACAA 62.111 57.895 0.00 0.00 45.36 3.33
1015 1408 3.580193 GCATGGCTGCCGCTAGTG 61.580 66.667 14.98 8.59 42.88 2.74
1016 1409 3.580193 CATGGCTGCCGCTAGTGC 61.580 66.667 14.98 0.00 36.09 4.40
1017 1410 4.100084 ATGGCTGCCGCTAGTGCA 62.100 61.111 14.98 8.49 39.64 4.57
1018 1411 3.626996 ATGGCTGCCGCTAGTGCAA 62.627 57.895 14.98 0.00 38.46 4.08
1019 1412 3.503363 GGCTGCCGCTAGTGCAAG 61.503 66.667 1.35 5.14 38.46 4.01
1020 1413 2.743928 GCTGCCGCTAGTGCAAGT 60.744 61.111 9.80 0.00 38.46 3.16
1021 1414 3.031964 GCTGCCGCTAGTGCAAGTG 62.032 63.158 9.80 0.00 38.46 3.16
1022 1415 3.031964 CTGCCGCTAGTGCAAGTGC 62.032 63.158 9.80 0.00 38.46 4.40
1023 1416 4.152625 GCCGCTAGTGCAAGTGCG 62.153 66.667 17.69 17.69 45.83 5.34
1025 1418 3.490759 CGCTAGTGCAAGTGCGGG 61.491 66.667 17.10 0.00 45.83 6.13
1026 1419 3.804193 GCTAGTGCAAGTGCGGGC 61.804 66.667 0.00 0.00 45.83 6.13
1027 1420 3.127533 CTAGTGCAAGTGCGGGCC 61.128 66.667 0.00 0.00 45.83 5.80
1046 1439 3.630148 CGCCGGCATGAACGCTAG 61.630 66.667 28.98 0.98 0.00 3.42
1060 1453 0.863538 CGCTAGTAGTGCTCTGTGCG 60.864 60.000 0.00 5.52 46.63 5.34
1218 1636 4.162690 GCGTCCATCCTCCGCCTT 62.163 66.667 0.00 0.00 41.50 4.35
1473 2648 2.366916 CCTACTCCTACTTCCCATGCAG 59.633 54.545 0.00 0.00 0.00 4.41
1475 2650 2.769209 ACTCCTACTTCCCATGCAGAT 58.231 47.619 0.00 0.00 0.00 2.90
1476 2651 3.118531 ACTCCTACTTCCCATGCAGATT 58.881 45.455 0.00 0.00 0.00 2.40
1480 2655 6.732862 ACTCCTACTTCCCATGCAGATTATAT 59.267 38.462 0.00 0.00 0.00 0.86
1484 2698 8.321353 CCTACTTCCCATGCAGATTATATTACA 58.679 37.037 0.00 0.00 0.00 2.41
1643 3306 2.338620 CTCGCCAACCTCACGTCA 59.661 61.111 0.00 0.00 0.00 4.35
1646 3309 2.310233 CGCCAACCTCACGTCACTG 61.310 63.158 0.00 0.00 0.00 3.66
1720 3383 0.745845 CTCCACCCATCGCTCAAAGG 60.746 60.000 0.00 0.00 0.00 3.11
1722 3385 0.107017 CCACCCATCGCTCAAAGGAT 60.107 55.000 0.00 0.00 0.00 3.24
1729 3424 6.039270 CACCCATCGCTCAAAGGATTAAATAA 59.961 38.462 0.00 0.00 0.00 1.40
1758 3455 4.646492 CCCTTTGCATTAGCCAACTAATCT 59.354 41.667 0.00 0.00 44.17 2.40
1814 3527 1.403323 GCAGACCTAATTTCTGGCAGC 59.597 52.381 10.34 0.00 40.84 5.25
1815 3528 2.715046 CAGACCTAATTTCTGGCAGCA 58.285 47.619 10.34 0.00 37.44 4.41
1828 3553 3.069300 TCTGGCAGCATGATAGAGAGAAC 59.931 47.826 10.34 0.00 39.69 3.01
1961 3693 2.166459 ACACTGCACGATACAGCTGTAT 59.834 45.455 34.12 34.12 43.38 2.29
1962 3694 2.537214 CACTGCACGATACAGCTGTATG 59.463 50.000 37.57 29.34 40.99 2.39
1963 3695 2.166459 ACTGCACGATACAGCTGTATGT 59.834 45.455 37.57 29.88 40.99 2.29
1964 3696 3.380320 ACTGCACGATACAGCTGTATGTA 59.620 43.478 37.57 24.83 40.99 2.29
2069 3807 4.569761 TCATCCGTGATTAGTGACTAGC 57.430 45.455 0.00 0.00 0.00 3.42
2256 3995 6.292328 GCCACTTAACTTTTTCAGTGAAATGC 60.292 38.462 18.69 5.13 39.25 3.56
2272 4011 0.394899 ATGCCTGGCTCTGGCTTTAC 60.395 55.000 21.03 0.00 46.43 2.01
2315 4054 8.532977 TCACATATATATTCACGTGTCATTGG 57.467 34.615 16.51 1.29 0.00 3.16
2319 4058 9.855021 CATATATATTCACGTGTCATTGGACTA 57.145 33.333 16.51 0.00 44.61 2.59
2326 4065 9.778741 ATTCACGTGTCATTGGACTAATAATAT 57.221 29.630 16.51 0.00 44.61 1.28
2348 4088 0.396278 AGGCAAGGATAAAGCTGGCC 60.396 55.000 0.00 0.00 40.18 5.36
2351 4091 0.734889 CAAGGATAAAGCTGGCCGTG 59.265 55.000 0.00 0.00 0.00 4.94
2425 4165 9.712305 TTAGATAGAAGAATAAAGCTGGCATAC 57.288 33.333 0.00 0.00 0.00 2.39
2426 4166 7.972301 AGATAGAAGAATAAAGCTGGCATACT 58.028 34.615 0.00 0.00 0.00 2.12
2427 4167 9.094578 AGATAGAAGAATAAAGCTGGCATACTA 57.905 33.333 0.00 0.00 0.00 1.82
2501 4242 5.825593 TCCTTTTACTCTGTTCCATCACT 57.174 39.130 0.00 0.00 0.00 3.41
2525 4266 7.998964 ACTGACTCAAATCCCTTTTTCTTTCTA 59.001 33.333 0.00 0.00 0.00 2.10
2666 4438 3.054065 GGGAAGATGAAGTGTCCCTCATT 60.054 47.826 0.12 0.00 45.50 2.57
2698 4470 6.094464 TCTGTTTTCTCTGATTACATGCATGG 59.906 38.462 29.41 11.47 0.00 3.66
3056 5012 1.001268 GAGATATCTCGCCGCTCACAA 60.001 52.381 16.77 0.00 32.78 3.33
3085 5041 3.784178 TGGAGAGATCAGGAAGAACTGT 58.216 45.455 0.00 0.00 39.48 3.55
3137 5093 6.141844 CGATCAAGGTGATACAACGTATGTAC 59.858 42.308 11.16 4.19 46.90 2.90
3295 5259 5.858049 CGTTTGTGTGTTGCATCATTTCTAT 59.142 36.000 0.00 0.00 0.00 1.98
3364 5328 6.456501 AGGCATATAACCATACTCTCGTTTC 58.543 40.000 0.00 0.00 0.00 2.78
3382 5346 4.045736 GTTTCCCTTCCCTAACCCTAGAT 58.954 47.826 0.00 0.00 0.00 1.98
3384 5348 2.869689 TCCCTTCCCTAACCCTAGATGA 59.130 50.000 0.00 0.00 0.00 2.92
3400 5364 7.147637 ACCCTAGATGATTAGGACAAACTCTTC 60.148 40.741 0.71 0.00 42.39 2.87
3402 5366 7.925483 CCTAGATGATTAGGACAAACTCTTCTG 59.075 40.741 0.00 0.00 42.39 3.02
3492 5457 2.190578 GAATCCCGGTGCCTCCAG 59.809 66.667 0.00 0.00 35.57 3.86
3534 5499 6.016610 GGTTATGTTTTTGTAGTCCTTGCAGA 60.017 38.462 0.00 0.00 0.00 4.26
3586 5551 1.040646 TCGAGTGTATCATCTGGGCC 58.959 55.000 0.00 0.00 0.00 5.80
3607 5572 1.268133 CGGATCCTTCTCGAGTTCGTC 60.268 57.143 13.13 5.78 40.80 4.20
3633 5598 1.448922 GGCGTAGTCGATGGAGCTCT 61.449 60.000 14.64 0.00 39.71 4.09
3635 5600 0.309302 CGTAGTCGATGGAGCTCTGG 59.691 60.000 14.64 0.00 39.71 3.86
3669 5688 8.574251 TGGTGTTAGTTGCTTCAAATATATGT 57.426 30.769 0.00 0.00 0.00 2.29
3692 5711 1.533129 GGGTTTAACGGCGATCAATGC 60.533 52.381 16.62 0.00 0.00 3.56
3710 5729 3.435186 GGCTTCAGGGCGCTTGTC 61.435 66.667 7.64 0.00 0.00 3.18
3741 5760 0.033090 GTCCACGAAGACTTTCCGGT 59.967 55.000 0.00 0.00 33.79 5.28
3748 5767 2.207590 GAAGACTTTCCGGTTGTCGTT 58.792 47.619 0.00 5.28 36.01 3.85
3751 5770 2.140717 GACTTTCCGGTTGTCGTTGAT 58.859 47.619 0.00 0.00 37.11 2.57
3775 5794 1.040893 TCAAGCCGGCTCCGATTAGA 61.041 55.000 32.93 15.67 42.83 2.10
3776 5795 0.179084 CAAGCCGGCTCCGATTAGAA 60.179 55.000 32.93 0.00 42.83 2.10
3797 5816 2.267642 GGCCATAGCGGTGTGTCA 59.732 61.111 10.52 0.00 41.24 3.58
3805 5824 1.037493 AGCGGTGTGTCAGTGACTTA 58.963 50.000 23.29 10.01 33.15 2.24
3823 5842 3.119101 ACTTATTCTGACGGCAGTAGTGG 60.119 47.826 19.93 9.72 42.84 4.00
3832 5851 2.092882 GCAGTAGTGGTCGTTCGGC 61.093 63.158 0.00 0.00 0.00 5.54
3836 5855 2.563798 TAGTGGTCGTTCGGCGGTT 61.564 57.895 7.21 0.00 41.72 4.44
3891 5910 3.057806 AGTTGGTTTTTCGATAAAGGGCG 60.058 43.478 0.98 0.00 0.00 6.13
3897 5916 4.673534 TTTTCGATAAAGGGCGTCTTTC 57.326 40.909 8.70 0.00 43.98 2.62
3906 5925 3.320673 AGGGCGTCTTTCTTAACTCAG 57.679 47.619 0.00 0.00 0.00 3.35
3910 5929 3.121445 GGCGTCTTTCTTAACTCAGAACG 59.879 47.826 0.00 0.00 32.28 3.95
3912 5931 4.913924 GCGTCTTTCTTAACTCAGAACGTA 59.086 41.667 0.00 0.00 32.28 3.57
3948 5967 7.716998 AGATACAAATCATGATGAGTAACACCC 59.283 37.037 18.78 9.81 34.28 4.61
3961 5980 1.847798 AACACCCGGCCTCTGCATAA 61.848 55.000 0.00 0.00 40.13 1.90
3965 5984 1.705186 ACCCGGCCTCTGCATAATTAT 59.295 47.619 0.00 0.00 40.13 1.28
4054 6074 4.026804 GTCAAATAAGACCGTCACTATGCG 60.027 45.833 0.40 0.00 32.36 4.73
4074 6094 3.002656 GCGTATGTTGAAGGATGTGATGG 59.997 47.826 0.00 0.00 0.00 3.51
4080 6100 0.109342 GAAGGATGTGATGGGCCGAT 59.891 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.033202 TCACGATCCGACCGATCCAA 61.033 55.000 0.00 0.00 44.07 3.53
2 3 1.033202 TTCACGATCCGACCGATCCA 61.033 55.000 0.00 0.00 44.07 3.41
3 4 0.317938 CTTCACGATCCGACCGATCC 60.318 60.000 0.00 0.00 44.07 3.36
4 5 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
5 6 0.381089 GTCTTCACGATCCGACCGAT 59.619 55.000 0.00 0.00 0.00 4.18
6 7 1.798735 GTCTTCACGATCCGACCGA 59.201 57.895 0.00 0.00 0.00 4.69
17 18 6.195983 CGGTTGATATAGTTGTACGTCTTCAC 59.804 42.308 0.00 0.00 0.00 3.18
18 19 6.260377 CGGTTGATATAGTTGTACGTCTTCA 58.740 40.000 0.00 0.00 0.00 3.02
19 20 5.172771 GCGGTTGATATAGTTGTACGTCTTC 59.827 44.000 0.00 0.00 0.00 2.87
20 21 5.039333 GCGGTTGATATAGTTGTACGTCTT 58.961 41.667 0.00 0.00 0.00 3.01
21 22 4.604976 GCGGTTGATATAGTTGTACGTCT 58.395 43.478 0.00 0.00 0.00 4.18
22 23 3.419922 CGCGGTTGATATAGTTGTACGTC 59.580 47.826 0.00 0.00 0.00 4.34
23 24 3.181497 ACGCGGTTGATATAGTTGTACGT 60.181 43.478 12.47 0.00 0.00 3.57
24 25 3.365832 ACGCGGTTGATATAGTTGTACG 58.634 45.455 12.47 0.00 0.00 3.67
25 26 4.563976 ACAACGCGGTTGATATAGTTGTAC 59.436 41.667 22.26 0.00 46.66 2.90
26 27 4.746729 ACAACGCGGTTGATATAGTTGTA 58.253 39.130 22.26 0.00 46.66 2.41
27 28 3.592059 ACAACGCGGTTGATATAGTTGT 58.408 40.909 22.26 12.11 45.28 3.32
28 29 3.615056 TGACAACGCGGTTGATATAGTTG 59.385 43.478 22.26 11.55 45.28 3.16
29 30 3.852286 TGACAACGCGGTTGATATAGTT 58.148 40.909 22.26 4.07 45.28 2.24
30 31 3.513680 TGACAACGCGGTTGATATAGT 57.486 42.857 22.26 4.69 45.28 2.12
31 32 5.387035 CGTTATGACAACGCGGTTGATATAG 60.387 44.000 22.26 1.41 45.28 1.31
32 33 4.441744 CGTTATGACAACGCGGTTGATATA 59.558 41.667 22.26 16.76 45.28 0.86
33 34 3.244345 CGTTATGACAACGCGGTTGATAT 59.756 43.478 22.26 17.46 45.28 1.63
34 35 2.599527 CGTTATGACAACGCGGTTGATA 59.400 45.455 22.26 13.29 45.28 2.15
35 36 1.392168 CGTTATGACAACGCGGTTGAT 59.608 47.619 22.26 12.10 45.28 2.57
36 37 0.785378 CGTTATGACAACGCGGTTGA 59.215 50.000 22.26 6.79 45.28 3.18
43 44 0.725117 GGGGAAGCGTTATGACAACG 59.275 55.000 5.22 5.22 45.56 4.10
44 45 2.109425 AGGGGAAGCGTTATGACAAC 57.891 50.000 0.00 0.00 0.00 3.32
45 46 2.871096 AAGGGGAAGCGTTATGACAA 57.129 45.000 0.00 0.00 0.00 3.18
46 47 2.417651 CGTAAGGGGAAGCGTTATGACA 60.418 50.000 0.00 0.00 0.00 3.58
47 48 2.199236 CGTAAGGGGAAGCGTTATGAC 58.801 52.381 0.00 0.00 0.00 3.06
48 49 2.589798 CGTAAGGGGAAGCGTTATGA 57.410 50.000 0.00 0.00 0.00 2.15
62 63 2.632377 TGTACCCTCGTAGACCGTAAG 58.368 52.381 0.00 0.00 37.94 2.34
63 64 2.779755 TGTACCCTCGTAGACCGTAA 57.220 50.000 0.00 0.00 37.94 3.18
64 65 2.564771 CATGTACCCTCGTAGACCGTA 58.435 52.381 0.00 0.00 37.94 4.02
65 66 1.386533 CATGTACCCTCGTAGACCGT 58.613 55.000 0.00 0.00 37.94 4.83
66 67 0.666913 CCATGTACCCTCGTAGACCG 59.333 60.000 0.00 0.00 38.13 4.79
67 68 1.680207 GTCCATGTACCCTCGTAGACC 59.320 57.143 0.00 0.00 0.00 3.85
68 69 2.372264 TGTCCATGTACCCTCGTAGAC 58.628 52.381 0.00 0.00 0.00 2.59
69 70 2.812836 TGTCCATGTACCCTCGTAGA 57.187 50.000 0.00 0.00 0.00 2.59
70 71 4.583489 AGTATTGTCCATGTACCCTCGTAG 59.417 45.833 0.00 0.00 0.00 3.51
71 72 4.539726 AGTATTGTCCATGTACCCTCGTA 58.460 43.478 0.00 0.00 0.00 3.43
72 73 3.371965 AGTATTGTCCATGTACCCTCGT 58.628 45.455 0.00 0.00 0.00 4.18
73 74 3.637229 AGAGTATTGTCCATGTACCCTCG 59.363 47.826 0.00 0.00 0.00 4.63
74 75 4.039366 GGAGAGTATTGTCCATGTACCCTC 59.961 50.000 0.00 0.00 36.76 4.30
75 76 3.967987 GGAGAGTATTGTCCATGTACCCT 59.032 47.826 0.00 0.00 36.76 4.34
76 77 3.071167 GGGAGAGTATTGTCCATGTACCC 59.929 52.174 3.74 0.00 38.50 3.69
77 78 3.071167 GGGGAGAGTATTGTCCATGTACC 59.929 52.174 3.74 0.00 38.50 3.34
78 79 3.967987 AGGGGAGAGTATTGTCCATGTAC 59.032 47.826 3.74 0.00 38.50 2.90
79 80 4.078571 AGAGGGGAGAGTATTGTCCATGTA 60.079 45.833 3.74 0.00 38.50 2.29
80 81 3.041946 GAGGGGAGAGTATTGTCCATGT 58.958 50.000 3.74 0.00 38.50 3.21
81 82 3.312890 AGAGGGGAGAGTATTGTCCATG 58.687 50.000 3.74 0.00 38.50 3.66
82 83 3.582164 GAGAGGGGAGAGTATTGTCCAT 58.418 50.000 3.74 0.00 38.50 3.41
83 84 2.687014 CGAGAGGGGAGAGTATTGTCCA 60.687 54.545 3.74 0.00 38.50 4.02
84 85 1.957877 CGAGAGGGGAGAGTATTGTCC 59.042 57.143 0.00 0.00 36.03 4.02
85 86 2.657143 ACGAGAGGGGAGAGTATTGTC 58.343 52.381 0.00 0.00 0.00 3.18
86 87 2.761208 CAACGAGAGGGGAGAGTATTGT 59.239 50.000 0.00 0.00 0.00 2.71
87 88 2.482142 GCAACGAGAGGGGAGAGTATTG 60.482 54.545 0.00 0.00 0.00 1.90
88 89 1.757699 GCAACGAGAGGGGAGAGTATT 59.242 52.381 0.00 0.00 0.00 1.89
89 90 1.063567 AGCAACGAGAGGGGAGAGTAT 60.064 52.381 0.00 0.00 0.00 2.12
90 91 0.331954 AGCAACGAGAGGGGAGAGTA 59.668 55.000 0.00 0.00 0.00 2.59
91 92 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
92 93 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
93 94 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
94 95 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
95 96 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
96 97 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
97 98 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
98 99 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
99 100 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
100 101 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
101 102 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
102 103 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
103 104 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
104 105 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
105 106 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
106 107 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
107 108 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
108 109 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
109 110 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
110 111 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
111 112 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
112 113 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
113 114 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
114 115 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
115 116 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
116 117 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
117 118 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
118 119 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
119 120 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
120 121 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
121 122 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
122 123 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
123 124 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
124 125 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
125 126 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
126 127 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
127 128 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
128 129 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
145 146 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
146 147 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
147 148 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
148 149 5.374921 TGTTGGGGAACGTAGTAATTTCAA 58.625 37.500 0.00 0.00 45.00 2.69
149 150 4.970711 TGTTGGGGAACGTAGTAATTTCA 58.029 39.130 0.00 0.00 45.00 2.69
150 151 5.945466 TTGTTGGGGAACGTAGTAATTTC 57.055 39.130 0.00 0.00 45.00 2.17
151 152 5.416639 GGATTGTTGGGGAACGTAGTAATTT 59.583 40.000 0.00 0.00 45.00 1.82
152 153 4.945543 GGATTGTTGGGGAACGTAGTAATT 59.054 41.667 0.00 0.00 45.00 1.40
153 154 4.520179 GGATTGTTGGGGAACGTAGTAAT 58.480 43.478 0.00 0.00 45.00 1.89
154 155 3.307621 GGGATTGTTGGGGAACGTAGTAA 60.308 47.826 0.00 0.00 45.00 2.24
155 156 2.236893 GGGATTGTTGGGGAACGTAGTA 59.763 50.000 0.00 0.00 45.00 1.82
157 158 1.003812 TGGGATTGTTGGGGAACGTAG 59.996 52.381 0.00 0.00 0.00 3.51
158 159 1.065647 TGGGATTGTTGGGGAACGTA 58.934 50.000 0.00 0.00 0.00 3.57
159 160 0.407918 ATGGGATTGTTGGGGAACGT 59.592 50.000 0.00 0.00 0.00 3.99
160 161 1.102978 GATGGGATTGTTGGGGAACG 58.897 55.000 0.00 0.00 0.00 3.95
161 162 1.485124 GGATGGGATTGTTGGGGAAC 58.515 55.000 0.00 0.00 0.00 3.62
162 163 0.338120 GGGATGGGATTGTTGGGGAA 59.662 55.000 0.00 0.00 0.00 3.97
163 164 0.853134 TGGGATGGGATTGTTGGGGA 60.853 55.000 0.00 0.00 0.00 4.81
164 165 0.265553 ATGGGATGGGATTGTTGGGG 59.734 55.000 0.00 0.00 0.00 4.96
165 166 1.708341 GATGGGATGGGATTGTTGGG 58.292 55.000 0.00 0.00 0.00 4.12
166 167 1.063038 TGGATGGGATGGGATTGTTGG 60.063 52.381 0.00 0.00 0.00 3.77
167 168 2.034124 GTGGATGGGATGGGATTGTTG 58.966 52.381 0.00 0.00 0.00 3.33
168 169 1.062962 GGTGGATGGGATGGGATTGTT 60.063 52.381 0.00 0.00 0.00 2.83
169 170 0.557729 GGTGGATGGGATGGGATTGT 59.442 55.000 0.00 0.00 0.00 2.71
170 171 0.557238 TGGTGGATGGGATGGGATTG 59.443 55.000 0.00 0.00 0.00 2.67
171 172 0.557729 GTGGTGGATGGGATGGGATT 59.442 55.000 0.00 0.00 0.00 3.01
172 173 1.708993 CGTGGTGGATGGGATGGGAT 61.709 60.000 0.00 0.00 0.00 3.85
173 174 2.374525 CGTGGTGGATGGGATGGGA 61.375 63.158 0.00 0.00 0.00 4.37
174 175 2.192979 CGTGGTGGATGGGATGGG 59.807 66.667 0.00 0.00 0.00 4.00
175 176 1.451927 CACGTGGTGGATGGGATGG 60.452 63.158 7.95 0.00 0.00 3.51
176 177 2.114670 GCACGTGGTGGATGGGATG 61.115 63.158 18.88 0.00 33.64 3.51
177 178 2.272146 GCACGTGGTGGATGGGAT 59.728 61.111 18.88 0.00 33.64 3.85
178 179 3.245346 TGCACGTGGTGGATGGGA 61.245 61.111 18.88 0.00 33.64 4.37
179 180 3.055719 GTGCACGTGGTGGATGGG 61.056 66.667 18.88 0.00 36.11 4.00
180 181 3.422303 CGTGCACGTGGTGGATGG 61.422 66.667 30.50 0.00 37.27 3.51
181 182 3.422303 CCGTGCACGTGGTGGATG 61.422 66.667 34.81 15.31 39.90 3.51
182 183 3.469863 AACCGTGCACGTGGTGGAT 62.470 57.895 34.81 13.41 38.82 3.41
189 190 3.719883 TTCCGTCAACCGTGCACGT 62.720 57.895 34.81 21.36 37.74 4.49
226 227 1.746470 TACACGATCTCAAGAGGCGA 58.254 50.000 16.09 0.00 33.31 5.54
227 228 2.389059 CATACACGATCTCAAGAGGCG 58.611 52.381 10.24 10.24 34.51 5.52
228 229 2.546795 CCCATACACGATCTCAAGAGGC 60.547 54.545 0.00 0.00 0.00 4.70
231 232 3.885901 CTCTCCCATACACGATCTCAAGA 59.114 47.826 0.00 0.00 0.00 3.02
232 233 3.005261 CCTCTCCCATACACGATCTCAAG 59.995 52.174 0.00 0.00 0.00 3.02
237 238 1.269831 GCACCTCTCCCATACACGATC 60.270 57.143 0.00 0.00 0.00 3.69
241 242 0.753262 ATCGCACCTCTCCCATACAC 59.247 55.000 0.00 0.00 0.00 2.90
246 247 0.325296 ACCTAATCGCACCTCTCCCA 60.325 55.000 0.00 0.00 0.00 4.37
256 257 2.223044 CGCTCCTCAAAAACCTAATCGC 60.223 50.000 0.00 0.00 0.00 4.58
286 287 0.548926 TTCATGAGGGTGTAGGGGCA 60.549 55.000 0.00 0.00 0.00 5.36
288 289 1.210478 CTGTTCATGAGGGTGTAGGGG 59.790 57.143 0.00 0.00 0.00 4.79
290 291 4.819105 TTACTGTTCATGAGGGTGTAGG 57.181 45.455 0.00 0.00 0.00 3.18
291 292 6.406370 TCATTTACTGTTCATGAGGGTGTAG 58.594 40.000 0.00 0.00 0.00 2.74
293 294 5.241403 TCATTTACTGTTCATGAGGGTGT 57.759 39.130 0.00 0.00 0.00 4.16
297 298 7.819415 TGTCTACTTCATTTACTGTTCATGAGG 59.181 37.037 0.00 8.54 31.90 3.86
298 299 8.763049 TGTCTACTTCATTTACTGTTCATGAG 57.237 34.615 0.00 0.00 0.00 2.90
299 300 9.554395 TTTGTCTACTTCATTTACTGTTCATGA 57.446 29.630 0.00 0.00 0.00 3.07
300 301 9.599322 GTTTGTCTACTTCATTTACTGTTCATG 57.401 33.333 0.00 0.00 0.00 3.07
301 302 8.495949 CGTTTGTCTACTTCATTTACTGTTCAT 58.504 33.333 0.00 0.00 0.00 2.57
302 303 7.493320 ACGTTTGTCTACTTCATTTACTGTTCA 59.507 33.333 0.00 0.00 0.00 3.18
303 304 7.848491 ACGTTTGTCTACTTCATTTACTGTTC 58.152 34.615 0.00 0.00 0.00 3.18
304 305 7.781548 ACGTTTGTCTACTTCATTTACTGTT 57.218 32.000 0.00 0.00 0.00 3.16
305 306 8.355169 TCTACGTTTGTCTACTTCATTTACTGT 58.645 33.333 0.00 0.00 0.00 3.55
306 307 8.738199 TCTACGTTTGTCTACTTCATTTACTG 57.262 34.615 0.00 0.00 0.00 2.74
307 308 9.355215 CATCTACGTTTGTCTACTTCATTTACT 57.645 33.333 0.00 0.00 0.00 2.24
308 309 9.350357 TCATCTACGTTTGTCTACTTCATTTAC 57.650 33.333 0.00 0.00 0.00 2.01
309 310 9.917129 TTCATCTACGTTTGTCTACTTCATTTA 57.083 29.630 0.00 0.00 0.00 1.40
310 311 8.827177 TTCATCTACGTTTGTCTACTTCATTT 57.173 30.769 0.00 0.00 0.00 2.32
311 312 8.088981 ACTTCATCTACGTTTGTCTACTTCATT 58.911 33.333 0.00 0.00 0.00 2.57
312 313 7.603651 ACTTCATCTACGTTTGTCTACTTCAT 58.396 34.615 0.00 0.00 0.00 2.57
313 314 6.978338 ACTTCATCTACGTTTGTCTACTTCA 58.022 36.000 0.00 0.00 0.00 3.02
314 315 9.570488 AATACTTCATCTACGTTTGTCTACTTC 57.430 33.333 0.00 0.00 0.00 3.01
315 316 9.355215 CAATACTTCATCTACGTTTGTCTACTT 57.645 33.333 0.00 0.00 0.00 2.24
316 317 7.974501 CCAATACTTCATCTACGTTTGTCTACT 59.025 37.037 0.00 0.00 0.00 2.57
317 318 7.972277 TCCAATACTTCATCTACGTTTGTCTAC 59.028 37.037 0.00 0.00 0.00 2.59
318 319 8.058667 TCCAATACTTCATCTACGTTTGTCTA 57.941 34.615 0.00 0.00 0.00 2.59
319 320 6.931838 TCCAATACTTCATCTACGTTTGTCT 58.068 36.000 0.00 0.00 0.00 3.41
320 321 7.591006 TTCCAATACTTCATCTACGTTTGTC 57.409 36.000 0.00 0.00 0.00 3.18
321 322 7.119262 CCTTTCCAATACTTCATCTACGTTTGT 59.881 37.037 0.00 0.00 0.00 2.83
322 323 7.119262 ACCTTTCCAATACTTCATCTACGTTTG 59.881 37.037 0.00 0.00 0.00 2.93
323 324 7.119262 CACCTTTCCAATACTTCATCTACGTTT 59.881 37.037 0.00 0.00 0.00 3.60
324 325 6.594159 CACCTTTCCAATACTTCATCTACGTT 59.406 38.462 0.00 0.00 0.00 3.99
325 326 6.070995 TCACCTTTCCAATACTTCATCTACGT 60.071 38.462 0.00 0.00 0.00 3.57
326 327 6.338146 TCACCTTTCCAATACTTCATCTACG 58.662 40.000 0.00 0.00 0.00 3.51
327 328 7.281100 CCTTCACCTTTCCAATACTTCATCTAC 59.719 40.741 0.00 0.00 0.00 2.59
328 329 7.338710 CCTTCACCTTTCCAATACTTCATCTA 58.661 38.462 0.00 0.00 0.00 1.98
329 330 6.183347 CCTTCACCTTTCCAATACTTCATCT 58.817 40.000 0.00 0.00 0.00 2.90
330 331 5.163612 GCCTTCACCTTTCCAATACTTCATC 60.164 44.000 0.00 0.00 0.00 2.92
331 332 4.706962 GCCTTCACCTTTCCAATACTTCAT 59.293 41.667 0.00 0.00 0.00 2.57
332 333 4.079253 GCCTTCACCTTTCCAATACTTCA 58.921 43.478 0.00 0.00 0.00 3.02
333 334 3.127030 CGCCTTCACCTTTCCAATACTTC 59.873 47.826 0.00 0.00 0.00 3.01
334 335 3.081804 CGCCTTCACCTTTCCAATACTT 58.918 45.455 0.00 0.00 0.00 2.24
335 336 2.304761 TCGCCTTCACCTTTCCAATACT 59.695 45.455 0.00 0.00 0.00 2.12
336 337 2.706890 TCGCCTTCACCTTTCCAATAC 58.293 47.619 0.00 0.00 0.00 1.89
337 338 3.278574 CATCGCCTTCACCTTTCCAATA 58.721 45.455 0.00 0.00 0.00 1.90
338 339 2.094675 CATCGCCTTCACCTTTCCAAT 58.905 47.619 0.00 0.00 0.00 3.16
339 340 1.202879 ACATCGCCTTCACCTTTCCAA 60.203 47.619 0.00 0.00 0.00 3.53
340 341 0.400213 ACATCGCCTTCACCTTTCCA 59.600 50.000 0.00 0.00 0.00 3.53
341 342 1.534729 AACATCGCCTTCACCTTTCC 58.465 50.000 0.00 0.00 0.00 3.13
342 343 2.293399 ACAAACATCGCCTTCACCTTTC 59.707 45.455 0.00 0.00 0.00 2.62
343 344 2.293399 GACAAACATCGCCTTCACCTTT 59.707 45.455 0.00 0.00 0.00 3.11
344 345 1.880027 GACAAACATCGCCTTCACCTT 59.120 47.619 0.00 0.00 0.00 3.50
345 346 1.072331 AGACAAACATCGCCTTCACCT 59.928 47.619 0.00 0.00 0.00 4.00
346 347 1.523758 AGACAAACATCGCCTTCACC 58.476 50.000 0.00 0.00 0.00 4.02
347 348 3.326747 AGTAGACAAACATCGCCTTCAC 58.673 45.455 0.00 0.00 0.00 3.18
348 349 3.678056 AGTAGACAAACATCGCCTTCA 57.322 42.857 0.00 0.00 0.00 3.02
349 350 3.994392 TGAAGTAGACAAACATCGCCTTC 59.006 43.478 0.00 0.00 33.94 3.46
350 351 4.002906 TGAAGTAGACAAACATCGCCTT 57.997 40.909 0.00 0.00 0.00 4.35
351 352 3.678056 TGAAGTAGACAAACATCGCCT 57.322 42.857 0.00 0.00 0.00 5.52
352 353 4.184629 AGATGAAGTAGACAAACATCGCC 58.815 43.478 0.00 0.00 41.15 5.54
353 354 5.805486 TGTAGATGAAGTAGACAAACATCGC 59.195 40.000 0.00 0.00 41.15 4.58
356 357 9.155975 GACAATGTAGATGAAGTAGACAAACAT 57.844 33.333 0.00 0.00 0.00 2.71
383 384 1.278238 CAATACTCGGTGAAGGCGAC 58.722 55.000 0.00 0.00 0.00 5.19
392 393 4.040706 TGTTACACCTTTCCAATACTCGGT 59.959 41.667 0.00 0.00 0.00 4.69
402 755 2.148768 CGGGAACTGTTACACCTTTCC 58.851 52.381 4.94 6.96 35.87 3.13
424 777 1.224592 CATGAGGGTGTAGGGGCAC 59.775 63.158 0.00 0.00 38.56 5.01
672 1041 4.554163 CGTCGTCGCCTTTTCTCT 57.446 55.556 0.00 0.00 0.00 3.10
796 1165 5.123820 TGGACTTTGAGTTGAAACTGAAGTG 59.876 40.000 18.78 9.54 39.81 3.16
1010 1403 3.127533 GGCCCGCACTTGCACTAG 61.128 66.667 1.48 0.00 42.21 2.57
1029 1422 2.947118 TACTAGCGTTCATGCCGGCG 62.947 60.000 23.90 8.74 34.65 6.46
1030 1423 1.215655 CTACTAGCGTTCATGCCGGC 61.216 60.000 22.73 22.73 34.65 6.13
1031 1424 0.102481 ACTACTAGCGTTCATGCCGG 59.898 55.000 0.00 0.00 34.65 6.13
1032 1425 1.200483 CACTACTAGCGTTCATGCCG 58.800 55.000 0.00 0.83 34.65 5.69
1033 1426 0.931005 GCACTACTAGCGTTCATGCC 59.069 55.000 0.00 0.00 34.65 4.40
1034 1427 1.855360 GAGCACTACTAGCGTTCATGC 59.145 52.381 0.00 0.00 37.01 4.06
1035 1428 3.111838 CAGAGCACTACTAGCGTTCATG 58.888 50.000 0.00 0.00 37.01 3.07
1036 1429 2.755655 ACAGAGCACTACTAGCGTTCAT 59.244 45.455 0.00 0.00 37.01 2.57
1037 1430 2.095212 CACAGAGCACTACTAGCGTTCA 60.095 50.000 0.00 0.00 37.01 3.18
1038 1431 2.520979 CACAGAGCACTACTAGCGTTC 58.479 52.381 0.00 0.00 37.01 3.95
1039 1432 1.402984 GCACAGAGCACTACTAGCGTT 60.403 52.381 0.00 0.00 44.79 4.84
1040 1433 0.171455 GCACAGAGCACTACTAGCGT 59.829 55.000 0.00 0.00 44.79 5.07
1041 1434 0.863538 CGCACAGAGCACTACTAGCG 60.864 60.000 0.00 0.00 46.13 4.26
1042 1435 0.171455 ACGCACAGAGCACTACTAGC 59.829 55.000 0.00 0.00 46.13 3.42
1043 1436 1.530031 CGACGCACAGAGCACTACTAG 60.530 57.143 0.00 0.00 46.13 2.57
1044 1437 0.446616 CGACGCACAGAGCACTACTA 59.553 55.000 0.00 0.00 46.13 1.82
1045 1438 1.210413 CGACGCACAGAGCACTACT 59.790 57.895 0.00 0.00 46.13 2.57
1046 1439 1.066114 GACGACGCACAGAGCACTAC 61.066 60.000 0.00 0.00 46.13 2.73
1060 1453 0.733729 ATGACGACTAGCAGGACGAC 59.266 55.000 7.59 3.06 0.00 4.34
1150 1568 4.640855 CACCACCGACGCGACTGT 62.641 66.667 15.93 6.43 0.00 3.55
1218 1636 1.497991 CGAAGCAGTCGTGGAAGAAA 58.502 50.000 1.91 0.00 45.09 2.52
1473 2648 7.560700 TGTCGTTCGTTGCATGTAATATAATC 58.439 34.615 0.00 0.00 0.00 1.75
1475 2650 6.889019 TGTCGTTCGTTGCATGTAATATAA 57.111 33.333 0.00 0.00 0.00 0.98
1476 2651 6.563196 GCATGTCGTTCGTTGCATGTAATATA 60.563 38.462 18.50 0.00 40.37 0.86
1480 2655 2.412195 GCATGTCGTTCGTTGCATGTAA 60.412 45.455 18.50 0.00 40.37 2.41
1484 2698 0.804364 ATGCATGTCGTTCGTTGCAT 59.196 45.000 18.53 18.53 38.05 3.96
1670 3333 1.741770 GAGCGCGACCATGTCCTTT 60.742 57.895 12.10 0.00 0.00 3.11
1729 3424 5.662657 AGTTGGCTAATGCAAAGGGAATAAT 59.337 36.000 0.00 0.00 41.91 1.28
1738 3433 6.832520 TTGAGATTAGTTGGCTAATGCAAA 57.167 33.333 4.79 0.00 45.16 3.68
1814 3527 7.731882 TTAGTCCTACGTTCTCTCTATCATG 57.268 40.000 0.00 0.00 0.00 3.07
1815 3528 7.940137 ACATTAGTCCTACGTTCTCTCTATCAT 59.060 37.037 0.00 0.00 0.00 2.45
1961 3693 2.280119 GCGATCATGCCGGCTACA 60.280 61.111 29.70 7.94 0.00 2.74
1962 3694 3.044305 GGCGATCATGCCGGCTAC 61.044 66.667 29.70 12.80 46.75 3.58
2069 3807 9.798994 ACTTCTAATTGGTAGTACGAGTAATTG 57.201 33.333 0.00 5.08 0.00 2.32
2256 3995 1.003580 TCAAGTAAAGCCAGAGCCAGG 59.996 52.381 0.00 0.00 41.25 4.45
2272 4011 2.686915 GTGATGGGAGGCATCTTTCAAG 59.313 50.000 0.00 0.00 0.00 3.02
2298 4037 9.778741 ATTATTAGTCCAATGACACGTGAATAT 57.221 29.630 25.01 10.20 44.33 1.28
2300 4039 9.778741 ATATTATTAGTCCAATGACACGTGAAT 57.221 29.630 25.01 12.57 44.33 2.57
2321 4060 7.176690 GCCAGCTTTATCCTTGCCTTAATATTA 59.823 37.037 0.00 0.00 0.00 0.98
2322 4061 6.015095 GCCAGCTTTATCCTTGCCTTAATATT 60.015 38.462 0.00 0.00 0.00 1.28
2325 4064 3.638627 GCCAGCTTTATCCTTGCCTTAAT 59.361 43.478 0.00 0.00 0.00 1.40
2326 4065 3.023832 GCCAGCTTTATCCTTGCCTTAA 58.976 45.455 0.00 0.00 0.00 1.85
2328 4067 1.478631 GCCAGCTTTATCCTTGCCTT 58.521 50.000 0.00 0.00 0.00 4.35
2330 4069 1.728490 CGGCCAGCTTTATCCTTGCC 61.728 60.000 2.24 0.00 37.67 4.52
2331 4070 1.032114 ACGGCCAGCTTTATCCTTGC 61.032 55.000 2.24 0.00 0.00 4.01
2332 4071 0.734889 CACGGCCAGCTTTATCCTTG 59.265 55.000 2.24 0.00 0.00 3.61
2335 4075 2.143925 GATACACGGCCAGCTTTATCC 58.856 52.381 2.24 0.00 0.00 2.59
2348 4088 1.710013 AGCACAAACCGAGATACACG 58.290 50.000 0.00 0.00 0.00 4.49
2351 4091 8.366671 AGATAATAAAGCACAAACCGAGATAC 57.633 34.615 0.00 0.00 0.00 2.24
2424 4164 9.159254 TCATAATCAAGTTGGATATCTGGTAGT 57.841 33.333 2.34 0.00 0.00 2.73
2427 4167 9.872684 AATTCATAATCAAGTTGGATATCTGGT 57.127 29.630 2.34 0.00 0.00 4.00
2449 4190 3.911964 GCGTGTGTGGTTGTGATTAATTC 59.088 43.478 0.00 0.00 0.00 2.17
2457 4198 1.803555 TCATATGCGTGTGTGGTTGTG 59.196 47.619 2.35 0.00 0.00 3.33
2501 4242 7.230712 GGTAGAAAGAAAAAGGGATTTGAGTCA 59.769 37.037 0.00 0.00 0.00 3.41
2575 4316 6.110033 AGGAACGTTTTGGCACTTTTATTTT 58.890 32.000 0.46 0.00 0.00 1.82
2649 4421 7.337942 AGAATTTGTAATGAGGGACACTTCATC 59.662 37.037 0.00 0.00 0.00 2.92
2698 4470 1.103803 TGTGAGATCCTGCGTAGGTC 58.896 55.000 19.70 15.26 44.88 3.85
3056 5012 3.729108 TCCTGATCTCTCCATTGTTCCT 58.271 45.455 0.00 0.00 0.00 3.36
3137 5093 4.058124 TCAACAAAACGTGGATCTCTCAG 58.942 43.478 0.00 0.00 0.00 3.35
3295 5259 9.387257 TCTCTCGTAAGTAGTACATGTGAAATA 57.613 33.333 9.11 0.00 39.48 1.40
3308 5272 7.041030 TCCAAGCATCTATTCTCTCGTAAGTAG 60.041 40.741 0.00 0.00 39.48 2.57
3364 5328 3.346146 TCATCTAGGGTTAGGGAAGGG 57.654 52.381 0.00 0.00 0.00 3.95
3400 5364 2.261671 CCGGTGAAGTCGGGACAG 59.738 66.667 0.00 0.00 43.45 3.51
3492 5457 7.326968 ACATAACCTAGACTACTAACCGAAC 57.673 40.000 0.00 0.00 0.00 3.95
3586 5551 0.029567 CGAACTCGAGAAGGATCCGG 59.970 60.000 21.68 0.00 43.02 5.14
3607 5572 0.248661 CATCGACTACGCCCAGACAG 60.249 60.000 0.00 0.00 39.58 3.51
3633 5598 3.688694 ACTAACACCAAATCTACGCCA 57.311 42.857 0.00 0.00 0.00 5.69
3635 5600 3.435671 AGCAACTAACACCAAATCTACGC 59.564 43.478 0.00 0.00 0.00 4.42
3669 5688 3.331478 TTGATCGCCGTTAAACCCTTA 57.669 42.857 0.00 0.00 0.00 2.69
3710 5729 2.267961 GTGGACGTGCCCCTAAGG 59.732 66.667 4.04 0.00 39.47 2.69
3741 5760 3.071479 GGCTTGACCTTATCAACGACAA 58.929 45.455 0.00 0.00 42.62 3.18
3748 5767 0.178068 GAGCCGGCTTGACCTTATCA 59.822 55.000 33.34 0.00 35.61 2.15
3751 5770 2.987125 GGAGCCGGCTTGACCTTA 59.013 61.111 33.34 0.00 35.61 2.69
3775 5794 2.824041 CACCGCTATGGCCGCTTT 60.824 61.111 0.00 0.00 43.94 3.51
3776 5795 4.096003 ACACCGCTATGGCCGCTT 62.096 61.111 0.00 0.00 43.94 4.68
3785 5804 1.037493 AAGTCACTGACACACCGCTA 58.963 50.000 11.80 0.00 34.60 4.26
3797 5816 2.563179 ACTGCCGTCAGAATAAGTCACT 59.437 45.455 0.00 0.00 42.95 3.41
3805 5824 1.204941 GACCACTACTGCCGTCAGAAT 59.795 52.381 0.00 0.00 42.95 2.40
3832 5851 8.447787 AAAATTACATCGAGATTTTGAAACCG 57.552 30.769 9.40 0.00 33.19 4.44
3859 5878 7.924103 ATCGAAAAACCAACTCAAACATAAC 57.076 32.000 0.00 0.00 0.00 1.89
3891 5910 5.919141 TGCTACGTTCTGAGTTAAGAAAGAC 59.081 40.000 0.00 0.00 37.72 3.01
3897 5916 6.093404 TCTTGATGCTACGTTCTGAGTTAAG 58.907 40.000 0.00 0.00 0.00 1.85
3906 5925 6.887376 TTGTATCTTCTTGATGCTACGTTC 57.113 37.500 0.00 0.00 38.39 3.95
3910 5929 9.049523 TCATGATTTGTATCTTCTTGATGCTAC 57.950 33.333 0.00 0.00 38.39 3.58
3912 5931 8.568794 CATCATGATTTGTATCTTCTTGATGCT 58.431 33.333 5.16 0.00 38.39 3.79
3948 5967 4.611310 CATCATAATTATGCAGAGGCCG 57.389 45.455 18.89 0.00 40.13 6.13
3961 5980 3.510753 TGTTTGGCTGTGTGCATCATAAT 59.489 39.130 0.00 0.00 45.15 1.28
3965 5984 0.385029 GTGTTTGGCTGTGTGCATCA 59.615 50.000 0.00 0.00 45.15 3.07
3977 5996 8.925161 TTTTCTTTCAGACTATTTGTGTTTGG 57.075 30.769 0.00 0.00 0.00 3.28
4054 6074 3.316308 GCCCATCACATCCTTCAACATAC 59.684 47.826 0.00 0.00 0.00 2.39
4080 6100 0.177141 GTGGCAGCATAACCTCCGTA 59.823 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.