Multiple sequence alignment - TraesCS5B01G146600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G146600 chr5B 100.000 2658 0 0 1 2658 275059100 275056443 0.000000e+00 4909.0
1 TraesCS5B01G146600 chr5B 84.914 232 19 8 2102 2319 275035677 275035448 1.240000e-53 220.0
2 TraesCS5B01G146600 chr5B 87.500 80 6 4 1985 2060 275035768 275035689 3.640000e-14 89.8
3 TraesCS5B01G146600 chr5B 92.105 38 3 0 2210 2247 275035644 275035607 1.000000e-03 54.7
4 TraesCS5B01G146600 chr5B 94.286 35 2 0 2139 2173 275056888 275056854 1.000000e-03 54.7
5 TraesCS5B01G146600 chr5B 94.286 35 2 0 2213 2247 275056962 275056928 1.000000e-03 54.7
6 TraesCS5B01G146600 chr5D 91.859 1818 101 27 1 1807 231329262 231331043 0.000000e+00 2494.0
7 TraesCS5B01G146600 chr5D 89.074 421 45 1 1791 2211 231331066 231331485 3.030000e-144 521.0
8 TraesCS5B01G146600 chr5D 91.266 229 16 3 1832 2060 231331789 231332013 2.570000e-80 309.0
9 TraesCS5B01G146600 chr5D 94.022 184 10 1 2391 2573 231331575 231331758 7.250000e-71 278.0
10 TraesCS5B01G146600 chr5D 89.732 224 9 3 2155 2364 231331355 231331578 9.370000e-70 274.0
11 TraesCS5B01G146600 chr5A 90.688 1439 86 19 402 1807 325953482 325952059 0.000000e+00 1871.0
12 TraesCS5B01G146600 chr5A 95.599 568 21 4 1791 2355 325952036 325951470 0.000000e+00 907.0
13 TraesCS5B01G146600 chr5A 91.367 278 15 2 2390 2658 325951470 325951193 3.230000e-99 372.0
14 TraesCS5B01G146600 chr5A 84.319 389 41 12 1 376 325953982 325953601 1.940000e-96 363.0
15 TraesCS5B01G146600 chr5A 85.169 236 20 5 2102 2323 325950670 325950436 7.400000e-56 228.0
16 TraesCS5B01G146600 chr5A 94.286 35 2 0 2139 2173 325951613 325951579 1.000000e-03 54.7
17 TraesCS5B01G146600 chr5A 92.105 38 3 0 2210 2247 325951690 325951653 1.000000e-03 54.7
18 TraesCS5B01G146600 chr4A 89.189 111 9 3 998 1106 477034976 477034867 4.620000e-28 135.0
19 TraesCS5B01G146600 chr4A 82.558 86 13 2 2330 2414 339591853 339591937 1.020000e-09 75.0
20 TraesCS5B01G146600 chr4A 85.714 70 5 2 2335 2404 584280166 584280102 4.750000e-08 69.4
21 TraesCS5B01G146600 chr4B 95.000 80 4 0 1001 1080 140889916 140889995 2.780000e-25 126.0
22 TraesCS5B01G146600 chr2A 84.615 91 9 4 2327 2412 692641949 692642039 4.710000e-13 86.1
23 TraesCS5B01G146600 chr2D 83.516 91 10 4 2327 2412 551871635 551871725 2.190000e-11 80.5
24 TraesCS5B01G146600 chr1D 85.526 76 5 2 2335 2404 228806409 228806334 1.020000e-09 75.0
25 TraesCS5B01G146600 chr1D 93.478 46 3 0 2367 2412 124343560 124343605 4.750000e-08 69.4
26 TraesCS5B01G146600 chr1D 81.928 83 10 1 2330 2412 7380203 7380280 6.140000e-07 65.8
27 TraesCS5B01G146600 chr3A 87.500 64 7 1 272 335 674340461 674340399 3.670000e-09 73.1
28 TraesCS5B01G146600 chr3D 83.333 72 6 2 2330 2401 254113237 254113302 7.940000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G146600 chr5B 275056443 275059100 2657 True 1672.800000 4909 96.190667 1 2658 3 chr5B.!!$R2 2657
1 TraesCS5B01G146600 chr5D 231329262 231332013 2751 False 775.200000 2494 91.190600 1 2573 5 chr5D.!!$F1 2572
2 TraesCS5B01G146600 chr5A 325950436 325953982 3546 True 550.057143 1871 90.504714 1 2658 7 chr5A.!!$R1 2657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
957 1088 1.131883 TCGTTTCGGATTCCTCTCGTC 59.868 52.381 0.3 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 2324 0.824109 TGTCCCTATCCAACAGCTCG 59.176 55.0 0.0 0.0 0.0 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 164 3.703556 AGAGATCGAGTCCATGTCAATGT 59.296 43.478 0.00 0.00 31.27 2.71
243 248 4.762251 GGGCTAGGAATCATGTGGAATTAC 59.238 45.833 0.00 0.00 0.00 1.89
259 264 6.546034 GTGGAATTACAGTGTATAAGGGCATT 59.454 38.462 3.28 0.00 0.00 3.56
261 266 7.617723 TGGAATTACAGTGTATAAGGGCATTTT 59.382 33.333 3.28 0.00 0.00 1.82
262 267 8.474831 GGAATTACAGTGTATAAGGGCATTTTT 58.525 33.333 3.28 0.00 0.00 1.94
273 278 2.696989 GGCATTTTTAATGCTGGCCT 57.303 45.000 20.07 0.00 44.02 5.19
274 279 2.554142 GGCATTTTTAATGCTGGCCTC 58.446 47.619 20.07 0.00 44.02 4.70
533 640 2.877866 AGAGGTCGAAGAGAAGGTCAA 58.122 47.619 0.00 0.00 36.95 3.18
544 659 2.855728 GAAGGTCAATGCGCTTGCCG 62.856 60.000 9.73 0.00 36.63 5.69
896 1027 3.496692 CCTGAGCGGATTCCATTCCATTA 60.497 47.826 3.09 0.00 35.34 1.90
957 1088 1.131883 TCGTTTCGGATTCCTCTCGTC 59.868 52.381 0.30 0.00 0.00 4.20
974 1105 1.664873 GTCTAATTGGTTCCGGAGCC 58.335 55.000 29.11 29.11 0.00 4.70
1064 1195 1.338136 GCCGGATTCTTCCTCCTCCA 61.338 60.000 5.05 0.00 40.17 3.86
1094 1225 2.019951 CCGACACCGACTGTTTCCG 61.020 63.158 0.00 0.00 38.22 4.30
1095 1226 1.299620 CGACACCGACTGTTTCCGT 60.300 57.895 0.00 0.00 38.22 4.69
1124 1255 2.034048 GAGGGCTCGGAATCTCCCAC 62.034 65.000 0.00 0.00 41.22 4.61
1191 1323 4.081087 CCAGTCTTGCCTACTTTTAGCCTA 60.081 45.833 0.00 0.00 0.00 3.93
1268 1400 2.030007 CCAATTCATGTTCGTGCAACCT 60.030 45.455 0.00 0.00 33.51 3.50
1280 1412 0.457853 TGCAACCTACGCTAGCGAAG 60.458 55.000 41.33 28.74 42.83 3.79
1420 1564 4.566004 TCATTAGGTTTCGAAGTCACCAG 58.434 43.478 17.54 6.60 34.00 4.00
1422 1566 4.884668 TTAGGTTTCGAAGTCACCAGAT 57.115 40.909 17.54 2.49 34.00 2.90
1452 1596 5.636965 CCATGGTTCAAATTTGCAATAACGA 59.363 36.000 13.54 9.89 0.00 3.85
1459 1603 8.372521 GTTCAAATTTGCAATAACGATCGATTT 58.627 29.630 24.34 9.29 0.00 2.17
1555 1702 0.819259 TGCAGGTTGGTTCAGCTGTC 60.819 55.000 14.67 8.29 43.10 3.51
1561 1708 2.427095 GGTTGGTTCAGCTGTCAAAACT 59.573 45.455 14.67 0.00 0.00 2.66
1588 1735 2.282180 ACAACGGTGGACATGGCC 60.282 61.111 12.04 12.04 0.00 5.36
1594 1741 4.722700 GTGGACATGGCCAGCGGT 62.723 66.667 24.38 9.65 38.95 5.68
1642 1789 2.941415 GCCACCGGTGAATTCTGAATCT 60.941 50.000 36.07 0.00 0.00 2.40
1698 1845 6.545666 TCTCTGTTTGACATTTGTGTAATGGT 59.454 34.615 0.00 0.00 46.49 3.55
1918 2105 6.239402 GCATATAAGAAATGCCAGAAATGGGT 60.239 38.462 0.00 0.00 43.17 4.51
1982 2169 7.774625 TCAAATTGGGAGAAATTTCTTGCTTTT 59.225 29.630 21.33 14.08 37.59 2.27
2059 2246 1.705997 CCTGTATACCCCCACCCTGC 61.706 65.000 0.00 0.00 0.00 4.85
2079 2266 2.498905 CATCGACATTTGAAGCACACG 58.501 47.619 0.00 0.00 0.00 4.49
2096 2283 1.800805 ACGCTTTGTGATCTCACCTG 58.199 50.000 7.81 0.12 45.88 4.00
2139 2326 5.764131 GGTTGATTACCAATGTGAAAACGA 58.236 37.500 0.00 0.00 46.92 3.85
2298 2499 5.694910 GTGAAGTACGTTTGATCCTTCTTCA 59.305 40.000 0.00 0.00 38.01 3.02
2302 2503 9.745880 GAAGTACGTTTGATCCTTCTTCATATA 57.254 33.333 0.00 0.00 32.93 0.86
2342 2543 4.961099 ACTTAGCTTATACTCCCTCCGTTT 59.039 41.667 0.00 0.00 0.00 3.60
2364 2565 6.392625 TTGGAAATAATTGACGTGGTTTCA 57.607 33.333 0.00 0.00 0.00 2.69
2366 2567 5.533154 TGGAAATAATTGACGTGGTTTCAGT 59.467 36.000 0.00 0.00 0.00 3.41
2367 2568 6.039941 TGGAAATAATTGACGTGGTTTCAGTT 59.960 34.615 0.00 0.00 0.00 3.16
2368 2569 6.921307 GGAAATAATTGACGTGGTTTCAGTTT 59.079 34.615 0.00 0.00 0.00 2.66
2369 2570 7.096230 GGAAATAATTGACGTGGTTTCAGTTTG 60.096 37.037 0.00 0.00 0.00 2.93
2370 2571 4.974368 AATTGACGTGGTTTCAGTTTGA 57.026 36.364 0.00 0.00 0.00 2.69
2371 2572 4.974368 ATTGACGTGGTTTCAGTTTGAA 57.026 36.364 0.00 0.00 34.03 2.69
2372 2573 3.750639 TGACGTGGTTTCAGTTTGAAC 57.249 42.857 0.00 0.00 35.89 3.18
2373 2574 3.340034 TGACGTGGTTTCAGTTTGAACT 58.660 40.909 0.00 0.00 35.89 3.01
2374 2575 4.505808 TGACGTGGTTTCAGTTTGAACTA 58.494 39.130 0.00 0.00 35.89 2.24
2375 2576 4.936411 TGACGTGGTTTCAGTTTGAACTAA 59.064 37.500 0.00 0.00 35.89 2.24
2376 2577 5.411977 TGACGTGGTTTCAGTTTGAACTAAA 59.588 36.000 0.00 0.00 35.89 1.85
2377 2578 6.072618 TGACGTGGTTTCAGTTTGAACTAAAA 60.073 34.615 0.00 0.00 35.89 1.52
2378 2579 6.088173 ACGTGGTTTCAGTTTGAACTAAAAC 58.912 36.000 12.25 12.25 43.36 2.43
2382 2583 6.548931 GTTTCAGTTTGAACTAAAACCACG 57.451 37.500 10.28 0.00 39.95 4.94
2383 2584 5.883503 TTCAGTTTGAACTAAAACCACGT 57.116 34.783 0.00 0.00 40.26 4.49
2384 2585 5.473796 TCAGTTTGAACTAAAACCACGTC 57.526 39.130 0.00 0.00 40.26 4.34
2385 2586 4.936411 TCAGTTTGAACTAAAACCACGTCA 59.064 37.500 0.00 0.00 40.26 4.35
2386 2587 5.064198 TCAGTTTGAACTAAAACCACGTCAG 59.936 40.000 0.00 0.00 40.26 3.51
2387 2588 4.939439 AGTTTGAACTAAAACCACGTCAGT 59.061 37.500 0.00 0.00 40.26 3.41
2388 2589 5.413523 AGTTTGAACTAAAACCACGTCAGTT 59.586 36.000 0.00 0.00 40.26 3.16
2389 2590 6.594937 AGTTTGAACTAAAACCACGTCAGTTA 59.405 34.615 1.13 0.00 40.26 2.24
2390 2591 7.281549 AGTTTGAACTAAAACCACGTCAGTTAT 59.718 33.333 1.13 0.00 40.26 1.89
2391 2592 7.556733 TTGAACTAAAACCACGTCAGTTATT 57.443 32.000 1.13 2.27 29.89 1.40
2392 2593 7.556733 TGAACTAAAACCACGTCAGTTATTT 57.443 32.000 1.13 0.00 29.89 1.40
2393 2594 7.632721 TGAACTAAAACCACGTCAGTTATTTC 58.367 34.615 1.13 2.34 29.89 2.17
2394 2595 6.549912 ACTAAAACCACGTCAGTTATTTCC 57.450 37.500 1.13 0.00 0.00 3.13
2395 2596 4.477302 AAAACCACGTCAGTTATTTCCG 57.523 40.909 1.13 0.00 0.00 4.30
2396 2597 3.389925 AACCACGTCAGTTATTTCCGA 57.610 42.857 0.00 0.00 0.00 4.55
2397 2598 3.389925 ACCACGTCAGTTATTTCCGAA 57.610 42.857 0.00 0.00 0.00 4.30
2398 2599 3.731089 ACCACGTCAGTTATTTCCGAAA 58.269 40.909 0.00 0.00 0.00 3.46
2476 2678 6.405278 TGCTGCATTGCTAATCTACTACTA 57.595 37.500 10.49 0.00 0.00 1.82
2500 2702 5.690409 ACACTACTCATTGTGTAAGTGTTCG 59.310 40.000 18.11 4.24 44.40 3.95
2600 2810 7.551035 AGTATGATGATTTCTTCTCAAGTGC 57.449 36.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 54 4.729227 TTACGATGTAGCATGGAGTTCA 57.271 40.909 0.00 0.00 0.00 3.18
243 248 7.436080 CAGCATTAAAAATGCCCTTATACACTG 59.564 37.037 18.37 5.27 45.59 3.66
259 264 3.006752 CAGTTTGGAGGCCAGCATTAAAA 59.993 43.478 5.01 0.00 33.81 1.52
261 266 2.170166 CAGTTTGGAGGCCAGCATTAA 58.830 47.619 5.01 0.00 33.81 1.40
262 267 1.838112 CAGTTTGGAGGCCAGCATTA 58.162 50.000 5.01 0.00 33.81 1.90
273 278 1.675310 CAGATGCGGGCAGTTTGGA 60.675 57.895 0.00 0.00 0.00 3.53
274 279 1.926511 GACAGATGCGGGCAGTTTGG 61.927 60.000 0.00 0.00 0.00 3.28
311 324 0.446222 CGTTGGATGGCTTAACACGG 59.554 55.000 0.00 0.00 0.00 4.94
316 329 0.249676 TACCGCGTTGGATGGCTTAA 59.750 50.000 4.92 0.00 42.00 1.85
518 625 1.996292 CGCATTGACCTTCTCTTCGA 58.004 50.000 0.00 0.00 0.00 3.71
522 629 1.446907 CAAGCGCATTGACCTTCTCT 58.553 50.000 11.47 0.00 41.83 3.10
533 640 2.081425 TTTTGAACCGGCAAGCGCAT 62.081 50.000 11.47 0.00 41.24 4.73
544 659 1.274798 CGTGCGTGCCATTTTGAACC 61.275 55.000 0.00 0.00 0.00 3.62
754 874 3.056328 GCCAGGACCGAAACAGCC 61.056 66.667 0.00 0.00 0.00 4.85
957 1088 1.668419 CTGGCTCCGGAACCAATTAG 58.332 55.000 26.17 11.83 34.96 1.73
974 1105 0.801251 CCTCTTTCGCTTCTTGCCTG 59.199 55.000 0.00 0.00 38.78 4.85
1081 1212 1.299620 CGTCACGGAAACAGTCGGT 60.300 57.895 0.00 0.00 40.23 4.69
1107 1238 2.506472 GTGGGAGATTCCGAGCCC 59.494 66.667 0.00 0.00 37.43 5.19
1167 1298 3.939066 GCTAAAAGTAGGCAAGACTGGA 58.061 45.455 0.00 0.00 0.00 3.86
1199 1331 8.618677 CAAGAAACGTGAGAGGTACTGTATATA 58.381 37.037 0.00 0.00 41.55 0.86
1200 1332 7.481642 CAAGAAACGTGAGAGGTACTGTATAT 58.518 38.462 0.00 0.00 41.55 0.86
1201 1333 6.624423 GCAAGAAACGTGAGAGGTACTGTATA 60.624 42.308 0.00 0.00 41.55 1.47
1202 1334 5.710984 CAAGAAACGTGAGAGGTACTGTAT 58.289 41.667 0.00 0.00 41.55 2.29
1203 1335 4.558095 GCAAGAAACGTGAGAGGTACTGTA 60.558 45.833 0.00 0.00 41.55 2.74
1204 1336 3.799232 GCAAGAAACGTGAGAGGTACTGT 60.799 47.826 0.00 0.00 41.55 3.55
1205 1337 2.731976 GCAAGAAACGTGAGAGGTACTG 59.268 50.000 0.00 0.00 41.55 2.74
1268 1400 8.806177 TTTATCATAAATTCTTCGCTAGCGTA 57.194 30.769 34.10 25.25 40.74 4.42
1377 1519 4.407296 TGAACCTTACCAACAAGCCATTTT 59.593 37.500 0.00 0.00 0.00 1.82
1379 1521 3.571590 TGAACCTTACCAACAAGCCATT 58.428 40.909 0.00 0.00 0.00 3.16
1420 1564 6.017275 TGCAAATTTGAACCATGGTTTGAATC 60.017 34.615 30.33 18.06 38.60 2.52
1422 1566 5.188434 TGCAAATTTGAACCATGGTTTGAA 58.812 33.333 30.33 25.20 38.60 2.69
1452 1596 7.915293 TCACAAACTAACATGGTAAATCGAT 57.085 32.000 0.00 0.00 0.00 3.59
1459 1603 5.506730 TCCCATCACAAACTAACATGGTA 57.493 39.130 0.00 0.00 33.38 3.25
1555 1702 2.223479 CGTTGTCCAGAACCCAGTTTTG 60.223 50.000 0.00 0.00 0.00 2.44
1561 1708 1.147376 CACCGTTGTCCAGAACCCA 59.853 57.895 0.00 0.00 0.00 4.51
1594 1741 2.658422 GTCCGCCAAAGGTACCGA 59.342 61.111 6.18 0.00 0.00 4.69
1629 1776 4.012374 GGCCTTGTCAGATTCAGAATTCA 58.988 43.478 8.44 0.00 0.00 2.57
1642 1789 4.308458 CGTCACCGGGCCTTGTCA 62.308 66.667 6.32 0.00 0.00 3.58
1674 1821 6.638063 CACCATTACACAAATGTCAAACAGAG 59.362 38.462 0.00 0.00 43.03 3.35
1698 1845 2.552155 CCAATTTCGTCCCTTGTCTCCA 60.552 50.000 0.00 0.00 0.00 3.86
1785 1932 3.996150 ACACAAGGCTCAAACATGAAG 57.004 42.857 0.00 0.00 0.00 3.02
1982 2169 3.161067 CTCCTCTGGACAACTCAAGAGA 58.839 50.000 3.73 0.00 0.00 3.10
2059 2246 2.498905 CGTGTGCTTCAAATGTCGATG 58.501 47.619 0.00 0.00 0.00 3.84
2096 2283 1.000938 CAGTCAAGCAACTTTCCCAGC 60.001 52.381 0.00 0.00 0.00 4.85
2137 2324 0.824109 TGTCCCTATCCAACAGCTCG 59.176 55.000 0.00 0.00 0.00 5.03
2139 2326 3.118531 AGATTGTCCCTATCCAACAGCT 58.881 45.455 0.00 0.00 0.00 4.24
2248 2447 7.707035 CGTGTTGGCTAAGTCTAATCTAGAAAT 59.293 37.037 0.00 0.00 36.40 2.17
2342 2543 5.533154 ACTGAAACCACGTCAATTATTTCCA 59.467 36.000 0.00 0.00 0.00 3.53
2364 2565 4.939439 ACTGACGTGGTTTTAGTTCAAACT 59.061 37.500 0.00 0.46 42.91 2.66
2366 2567 5.883503 AACTGACGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
2367 2568 7.556733 AATAACTGACGTGGTTTTAGTTCAA 57.443 32.000 0.00 0.00 33.93 2.69
2368 2569 7.254863 GGAAATAACTGACGTGGTTTTAGTTCA 60.255 37.037 0.00 0.00 31.54 3.18
2369 2570 7.073883 GGAAATAACTGACGTGGTTTTAGTTC 58.926 38.462 0.00 0.27 33.93 3.01
2370 2571 6.293027 CGGAAATAACTGACGTGGTTTTAGTT 60.293 38.462 0.00 0.00 35.86 2.24
2371 2572 5.178067 CGGAAATAACTGACGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2372 2573 5.406175 TCGGAAATAACTGACGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2373 2574 5.295950 TCGGAAATAACTGACGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2374 2575 4.128643 TCGGAAATAACTGACGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2375 2576 3.731089 TCGGAAATAACTGACGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2376 2577 3.389925 TCGGAAATAACTGACGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2377 2578 3.389925 TTCGGAAATAACTGACGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
2378 2579 3.124636 CCTTTCGGAAATAACTGACGTGG 59.875 47.826 3.24 0.00 0.00 4.94
2379 2580 3.991773 TCCTTTCGGAAATAACTGACGTG 59.008 43.478 3.24 0.00 36.03 4.49
2380 2581 4.243270 CTCCTTTCGGAAATAACTGACGT 58.757 43.478 3.24 0.00 39.29 4.34
2381 2582 3.617263 CCTCCTTTCGGAAATAACTGACG 59.383 47.826 3.24 0.00 39.29 4.35
2382 2583 4.576879 ACCTCCTTTCGGAAATAACTGAC 58.423 43.478 3.24 0.00 39.29 3.51
2383 2584 4.903045 ACCTCCTTTCGGAAATAACTGA 57.097 40.909 3.24 0.00 39.29 3.41
2384 2585 8.904099 ATATTACCTCCTTTCGGAAATAACTG 57.096 34.615 3.24 0.00 39.29 3.16
2385 2586 9.916360 AAATATTACCTCCTTTCGGAAATAACT 57.084 29.630 3.24 0.00 39.29 2.24
2386 2587 9.946165 CAAATATTACCTCCTTTCGGAAATAAC 57.054 33.333 3.24 0.00 39.29 1.89
2387 2588 9.689501 ACAAATATTACCTCCTTTCGGAAATAA 57.310 29.630 3.24 0.23 39.29 1.40
2388 2589 9.333724 GACAAATATTACCTCCTTTCGGAAATA 57.666 33.333 3.24 0.00 39.29 1.40
2389 2590 7.832187 TGACAAATATTACCTCCTTTCGGAAAT 59.168 33.333 3.24 0.00 39.29 2.17
2390 2591 7.169591 TGACAAATATTACCTCCTTTCGGAAA 58.830 34.615 2.78 2.78 39.29 3.13
2391 2592 6.713276 TGACAAATATTACCTCCTTTCGGAA 58.287 36.000 0.00 0.00 39.29 4.30
2392 2593 6.302535 TGACAAATATTACCTCCTTTCGGA 57.697 37.500 0.00 0.00 37.82 4.55
2393 2594 6.995511 TTGACAAATATTACCTCCTTTCGG 57.004 37.500 0.00 0.00 0.00 4.30
2453 2655 5.282055 AGTAGTAGATTAGCAATGCAGCA 57.718 39.130 8.35 0.00 36.85 4.41
2500 2702 7.492344 CCCAATAACCAGATTAAATTCAAGTGC 59.508 37.037 0.00 0.00 0.00 4.40
2513 2715 3.200825 CCAGACTGTCCCAATAACCAGAT 59.799 47.826 3.76 0.00 0.00 2.90
2613 2823 6.648725 GGATGACCTCTGCATTTTATCTAGAC 59.351 42.308 0.00 0.00 0.00 2.59
2614 2824 6.556495 AGGATGACCTCTGCATTTTATCTAGA 59.444 38.462 0.00 0.00 44.13 2.43
2615 2825 6.649973 CAGGATGACCTCTGCATTTTATCTAG 59.350 42.308 0.00 0.00 45.94 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.