Multiple sequence alignment - TraesCS5B01G146400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G146400 chr5B 100.000 3831 0 0 2148 5978 274461314 274465144 0.000000e+00 7075.0
1 TraesCS5B01G146400 chr5B 98.461 3118 33 4 2388 5494 274349841 274352954 0.000000e+00 5478.0
2 TraesCS5B01G146400 chr5B 100.000 1868 0 0 1 1868 274459167 274461034 0.000000e+00 3450.0
3 TraesCS5B01G146400 chr5B 98.091 1886 15 3 1 1868 274348029 274349911 0.000000e+00 3264.0
4 TraesCS5B01G146400 chr5B 99.590 244 1 0 2148 2391 274460791 274461034 4.250000e-121 446.0
5 TraesCS5B01G146400 chr5B 99.590 244 1 0 1625 1868 274461314 274461557 4.250000e-121 446.0
6 TraesCS5B01G146400 chr5B 99.184 245 2 0 2148 2392 274349668 274349912 5.500000e-120 442.0
7 TraesCS5B01G146400 chr5B 98.148 54 0 1 5066 5119 274352579 274352631 6.380000e-15 93.5
8 TraesCS5B01G146400 chr5B 96.296 54 1 1 5119 5171 274352526 274352579 2.970000e-13 87.9
9 TraesCS5B01G146400 chr5B 96.296 54 1 1 5119 5171 274464232 274464285 2.970000e-13 87.9
10 TraesCS5B01G146400 chr5B 96.296 54 1 1 5066 5119 274464285 274464337 2.970000e-13 87.9
11 TraesCS5B01G146400 chr5A 92.541 724 17 9 2515 3203 382106511 382107232 0.000000e+00 1003.0
12 TraesCS5B01G146400 chr5A 92.149 726 18 11 2514 3203 444900331 444899609 0.000000e+00 989.0
13 TraesCS5B01G146400 chr5A 93.103 493 25 3 5494 5978 496993039 496993530 0.000000e+00 713.0
14 TraesCS5B01G146400 chr5A 80.315 508 62 21 5494 5971 600894034 600893535 3.430000e-92 350.0
15 TraesCS5B01G146400 chr5A 98.425 127 2 0 2388 2514 143581188 143581314 2.170000e-54 224.0
16 TraesCS5B01G146400 chr5A 87.500 64 6 2 747 810 546766173 546766234 8.310000e-09 73.1
17 TraesCS5B01G146400 chr2D 91.008 734 21 6 2514 3203 537418338 537419070 0.000000e+00 948.0
18 TraesCS5B01G146400 chr2D 90.859 733 21 21 2515 3203 561051789 561051059 0.000000e+00 941.0
19 TraesCS5B01G146400 chr2D 98.425 127 2 0 2388 2514 350750383 350750509 2.170000e-54 224.0
20 TraesCS5B01G146400 chr2D 98.425 127 2 0 2388 2514 405107295 405107421 2.170000e-54 224.0
21 TraesCS5B01G146400 chr2D 96.610 118 4 0 2275 2392 594144229 594144112 4.730000e-46 196.0
22 TraesCS5B01G146400 chr2D 96.581 117 4 0 1752 1868 594144229 594144113 1.700000e-45 195.0
23 TraesCS5B01G146400 chr1B 89.510 734 32 11 2514 3203 662721747 662721015 0.000000e+00 887.0
24 TraesCS5B01G146400 chr1B 96.791 187 6 0 3203 3389 605915024 605914838 4.500000e-81 313.0
25 TraesCS5B01G146400 chr1B 96.257 187 7 0 3203 3389 98964558 98964744 2.090000e-79 307.0
26 TraesCS5B01G146400 chr7A 88.950 733 35 23 2514 3203 162406390 162407119 0.000000e+00 863.0
27 TraesCS5B01G146400 chr7A 95.263 190 9 0 3203 3392 319591817 319592006 9.740000e-78 302.0
28 TraesCS5B01G146400 chr7A 80.899 178 31 3 642 818 721109550 721109725 2.910000e-28 137.0
29 TraesCS5B01G146400 chr7A 84.810 79 10 2 697 774 275543282 275543205 1.790000e-10 78.7
30 TraesCS5B01G146400 chr7B 96.146 493 11 2 5494 5978 322663932 322663440 0.000000e+00 798.0
31 TraesCS5B01G146400 chr7B 82.480 371 41 15 5630 5978 418452998 418452630 2.710000e-78 303.0
32 TraesCS5B01G146400 chr2B 94.929 493 17 4 5494 5978 706793659 706794151 0.000000e+00 765.0
33 TraesCS5B01G146400 chr2B 79.528 508 67 22 5493 5971 568676803 568676304 1.610000e-85 327.0
34 TraesCS5B01G146400 chr6A 94.378 498 23 3 5485 5978 90100759 90100263 0.000000e+00 760.0
35 TraesCS5B01G146400 chr6A 96.610 118 4 0 2275 2392 170904700 170904583 4.730000e-46 196.0
36 TraesCS5B01G146400 chr6A 96.581 117 4 0 1752 1868 170904700 170904584 1.700000e-45 195.0
37 TraesCS5B01G146400 chr6A 80.412 194 31 6 642 831 229083256 229083446 2.250000e-29 141.0
38 TraesCS5B01G146400 chr1A 93.902 492 21 5 5494 5978 510302004 510302493 0.000000e+00 734.0
39 TraesCS5B01G146400 chr7D 95.466 397 9 2 2816 3203 592818044 592818440 5.090000e-175 625.0
40 TraesCS5B01G146400 chr7D 92.027 301 14 7 2506 2800 592817284 592817580 1.200000e-111 414.0
41 TraesCS5B01G146400 chr7D 96.610 118 4 0 2275 2392 41280253 41280136 4.730000e-46 196.0
42 TraesCS5B01G146400 chr7D 96.581 117 4 0 1752 1868 41280253 41280137 1.700000e-45 195.0
43 TraesCS5B01G146400 chr6D 93.072 332 22 1 5494 5825 283459783 283460113 9.010000e-133 484.0
44 TraesCS5B01G146400 chr6D 79.837 367 43 21 5633 5975 465128161 465127802 7.740000e-59 239.0
45 TraesCS5B01G146400 chr6D 96.610 118 4 0 2275 2392 169574226 169574109 4.730000e-46 196.0
46 TraesCS5B01G146400 chr6D 96.581 117 4 0 1752 1868 169574226 169574110 1.700000e-45 195.0
47 TraesCS5B01G146400 chr6B 88.991 327 31 3 5494 5819 420847765 420848087 3.360000e-107 399.0
48 TraesCS5B01G146400 chr6B 91.908 173 9 2 5811 5978 420856838 420857010 2.780000e-58 237.0
49 TraesCS5B01G146400 chr4D 80.709 508 61 21 5494 5971 58919666 58919166 1.580000e-95 361.0
50 TraesCS5B01G146400 chr4D 93.909 197 11 1 3203 3398 195030467 195030663 4.530000e-76 296.0
51 TraesCS5B01G146400 chr4D 99.213 127 1 0 2388 2514 319247576 319247702 4.660000e-56 230.0
52 TraesCS5B01G146400 chr4D 98.425 127 2 0 2388 2514 42525769 42525895 2.170000e-54 224.0
53 TraesCS5B01G146400 chr4D 98.425 127 2 0 2388 2514 172708810 172708936 2.170000e-54 224.0
54 TraesCS5B01G146400 chr4D 96.610 118 4 0 2275 2392 319247530 319247647 4.730000e-46 196.0
55 TraesCS5B01G146400 chr4D 96.610 118 4 0 2275 2392 418863653 418863536 4.730000e-46 196.0
56 TraesCS5B01G146400 chr4D 96.581 117 4 0 1752 1868 319247530 319247646 1.700000e-45 195.0
57 TraesCS5B01G146400 chr4D 96.581 117 4 0 1752 1868 418863653 418863537 1.700000e-45 195.0
58 TraesCS5B01G146400 chr5D 98.396 187 3 0 3203 3389 67584586 67584772 4.470000e-86 329.0
59 TraesCS5B01G146400 chr5D 99.206 126 1 0 2389 2514 330310873 330310998 1.680000e-55 228.0
60 TraesCS5B01G146400 chr3D 97.326 187 5 0 3203 3389 264712103 264712289 9.670000e-83 318.0
61 TraesCS5B01G146400 chr3D 96.791 187 6 0 3203 3389 225855033 225855219 4.500000e-81 313.0
62 TraesCS5B01G146400 chr3D 77.495 511 59 30 5494 5978 395993781 395994261 7.690000e-64 255.0
63 TraesCS5B01G146400 chr3D 85.950 121 11 5 3080 3198 270624883 270624999 2.260000e-24 124.0
64 TraesCS5B01G146400 chr3D 97.260 73 1 1 2956 3027 529794640 529794568 8.140000e-24 122.0
65 TraesCS5B01G146400 chr3D 85.556 90 10 3 736 824 32328468 32328381 2.290000e-14 91.6
66 TraesCS5B01G146400 chr3A 96.257 187 7 0 3203 3389 308688717 308688531 2.090000e-79 307.0
67 TraesCS5B01G146400 chr3A 91.892 37 3 0 829 865 465019971 465020007 1.100000e-02 52.8
68 TraesCS5B01G146400 chr3B 98.425 127 2 0 2388 2514 123125583 123125709 2.170000e-54 224.0
69 TraesCS5B01G146400 chr3B 78.906 256 35 9 5493 5733 515019391 515019642 8.020000e-34 156.0
70 TraesCS5B01G146400 chr4A 96.610 118 4 0 2275 2392 662099879 662099996 4.730000e-46 196.0
71 TraesCS5B01G146400 chr1D 96.581 117 4 0 1752 1868 164444996 164444880 1.700000e-45 195.0
72 TraesCS5B01G146400 chrUn 87.342 79 10 0 732 810 46161848 46161926 2.290000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G146400 chr5B 274459167 274465144 5977 False 1932.133333 7075 98.628667 1 5978 6 chr5B.!!$F2 5977
1 TraesCS5B01G146400 chr5B 274348029 274352954 4925 False 1873.080000 5478 98.036000 1 5494 5 chr5B.!!$F1 5493
2 TraesCS5B01G146400 chr5A 382106511 382107232 721 False 1003.000000 1003 92.541000 2515 3203 1 chr5A.!!$F2 688
3 TraesCS5B01G146400 chr5A 444899609 444900331 722 True 989.000000 989 92.149000 2514 3203 1 chr5A.!!$R1 689
4 TraesCS5B01G146400 chr2D 537418338 537419070 732 False 948.000000 948 91.008000 2514 3203 1 chr2D.!!$F3 689
5 TraesCS5B01G146400 chr2D 561051059 561051789 730 True 941.000000 941 90.859000 2515 3203 1 chr2D.!!$R1 688
6 TraesCS5B01G146400 chr1B 662721015 662721747 732 True 887.000000 887 89.510000 2514 3203 1 chr1B.!!$R2 689
7 TraesCS5B01G146400 chr7A 162406390 162407119 729 False 863.000000 863 88.950000 2514 3203 1 chr7A.!!$F1 689
8 TraesCS5B01G146400 chr7D 592817284 592818440 1156 False 519.500000 625 93.746500 2506 3203 2 chr7D.!!$F1 697
9 TraesCS5B01G146400 chr4D 58919166 58919666 500 True 361.000000 361 80.709000 5494 5971 1 chr4D.!!$R1 477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 934 2.361610 GGTGACTGGGGGCACATG 60.362 66.667 4.36 0.0 36.76 3.21 F
1853 1872 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.0 41.19 4.26 F
2376 2395 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.0 41.19 4.26 F
2394 2413 0.242825 CGGACGGCTAAAGTGTGAGA 59.757 55.000 0.00 0.0 0.00 3.27 F
2415 2434 0.249031 GGTTTGGGCATATTCAGCGC 60.249 55.000 0.00 0.0 44.24 5.92 F
2423 2442 1.072159 ATATTCAGCGCAGGCCTCC 59.928 57.895 11.47 0.0 41.24 4.30 F
2424 2443 1.699054 ATATTCAGCGCAGGCCTCCA 61.699 55.000 11.47 0.0 41.24 3.86 F
2425 2444 2.315781 TATTCAGCGCAGGCCTCCAG 62.316 60.000 11.47 0.0 41.24 3.86 F
2479 2498 2.737039 GCGGAGAATGTCAAGAGAGGTC 60.737 54.545 0.00 0.0 0.00 3.85 F
4668 5150 0.249238 TTTGCACATTTGACGGGCAC 60.249 50.000 0.00 0.0 33.66 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2206 0.102300 GTGTTCTTTGGTGGTGGTGC 59.898 55.000 0.00 0.0 0.00 5.01 R
3365 3847 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.0 0.00 3.33 R
4276 4758 2.553602 CACCAGTGAGCAATAAAGCACA 59.446 45.455 0.00 0.0 36.85 4.57 R
4306 4788 5.520376 AGTGCTGCAAACTTTAAGAATGT 57.480 34.783 2.77 0.0 0.00 2.71 R
4516 4998 7.122650 TCCCAGTCTTGAAAATTAATGGATGAC 59.877 37.037 0.00 0.0 30.99 3.06 R
4530 5012 6.542821 AGTTTCAATATGTCCCAGTCTTGAA 58.457 36.000 0.00 0.0 32.49 2.69 R
4647 5129 0.858583 GCCCGTCAAATGTGCAAAAC 59.141 50.000 0.00 0.0 0.00 2.43 R
4668 5150 9.522804 GTTCCAGATAGTTACTAGAATGACAAG 57.477 37.037 0.00 0.0 0.00 3.16 R
4755 5237 6.479972 TTAATGATCCCACTGTCTTCGTAT 57.520 37.500 0.00 0.0 0.00 3.06 R
5708 6207 0.250124 TGGGTGCGTCGTTCAAGAAT 60.250 50.000 0.00 0.0 0.00 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 194 4.506217 GCGAATTCGTTTGTCAGTATAGC 58.494 43.478 27.24 3.27 42.22 2.97
590 609 3.079578 GGGTTTCTTTAGGGTTTCGGAG 58.920 50.000 0.00 0.00 0.00 4.63
702 721 4.101585 TGCCATGTAATCTAGGGAAGACAG 59.898 45.833 0.00 0.00 36.93 3.51
915 934 2.361610 GGTGACTGGGGGCACATG 60.362 66.667 4.36 0.00 36.76 3.21
1220 1239 2.143925 GTCACGGAATATAGGGCAAGC 58.856 52.381 0.00 0.00 0.00 4.01
1259 1278 9.150348 ACCTTTTCCTTTTATCATTTTATTGCG 57.850 29.630 0.00 0.00 0.00 4.85
1420 1439 6.725246 ACACTTATTTTCTGAAAGGTCAACG 58.275 36.000 2.75 0.00 31.88 4.10
1558 1577 7.933577 TCGCATTACCTTAGCTAGTAGTAACTA 59.066 37.037 12.04 0.00 37.15 2.24
1569 1588 7.708998 AGCTAGTAGTAACTACTTGATTGAGC 58.291 38.462 9.53 7.81 43.82 4.26
1679 1698 2.447572 TGGCACCACCACCAGAGA 60.448 61.111 0.00 0.00 46.36 3.10
1680 1699 2.075566 TGGCACCACCACCAGAGAA 61.076 57.895 0.00 0.00 46.36 2.87
1681 1700 1.600916 GGCACCACCACCAGAGAAC 60.601 63.158 0.00 0.00 38.86 3.01
1682 1701 1.148273 GCACCACCACCAGAGAACA 59.852 57.895 0.00 0.00 0.00 3.18
1683 1702 1.166531 GCACCACCACCAGAGAACAC 61.167 60.000 0.00 0.00 0.00 3.32
1684 1703 0.469917 CACCACCACCAGAGAACACT 59.530 55.000 0.00 0.00 0.00 3.55
1685 1704 0.469917 ACCACCACCAGAGAACACTG 59.530 55.000 0.00 0.00 37.61 3.66
1686 1705 0.469917 CCACCACCAGAGAACACTGT 59.530 55.000 0.00 0.00 36.30 3.55
1687 1706 1.541233 CCACCACCAGAGAACACTGTC 60.541 57.143 0.00 0.00 36.30 3.51
1688 1707 1.138859 CACCACCAGAGAACACTGTCA 59.861 52.381 0.00 0.00 36.30 3.58
1689 1708 2.050144 ACCACCAGAGAACACTGTCAT 58.950 47.619 0.00 0.00 36.30 3.06
1690 1709 2.439507 ACCACCAGAGAACACTGTCATT 59.560 45.455 0.00 0.00 36.30 2.57
1691 1710 2.810274 CCACCAGAGAACACTGTCATTG 59.190 50.000 0.00 0.00 36.30 2.82
1692 1711 2.225019 CACCAGAGAACACTGTCATTGC 59.775 50.000 0.00 0.00 36.30 3.56
1693 1712 2.105477 ACCAGAGAACACTGTCATTGCT 59.895 45.455 0.00 0.00 36.30 3.91
1694 1713 3.144506 CCAGAGAACACTGTCATTGCTT 58.855 45.455 0.00 0.00 36.30 3.91
1695 1714 3.058432 CCAGAGAACACTGTCATTGCTTG 60.058 47.826 0.00 0.00 36.30 4.01
1696 1715 3.811497 CAGAGAACACTGTCATTGCTTGA 59.189 43.478 0.00 0.00 33.73 3.02
1697 1716 4.274214 CAGAGAACACTGTCATTGCTTGAA 59.726 41.667 0.00 0.00 35.70 2.69
1698 1717 4.883585 AGAGAACACTGTCATTGCTTGAAA 59.116 37.500 0.00 0.00 35.70 2.69
1699 1718 5.533903 AGAGAACACTGTCATTGCTTGAAAT 59.466 36.000 0.00 0.00 35.70 2.17
1700 1719 6.712095 AGAGAACACTGTCATTGCTTGAAATA 59.288 34.615 0.00 0.00 35.70 1.40
1701 1720 6.672147 AGAACACTGTCATTGCTTGAAATAC 58.328 36.000 0.00 0.00 35.70 1.89
1702 1721 5.034554 ACACTGTCATTGCTTGAAATACG 57.965 39.130 0.00 0.00 35.70 3.06
1703 1722 4.515191 ACACTGTCATTGCTTGAAATACGT 59.485 37.500 0.00 0.00 35.70 3.57
1704 1723 5.008613 ACACTGTCATTGCTTGAAATACGTT 59.991 36.000 0.00 0.00 35.70 3.99
1705 1724 5.914635 CACTGTCATTGCTTGAAATACGTTT 59.085 36.000 0.00 0.00 35.70 3.60
1706 1725 6.417635 CACTGTCATTGCTTGAAATACGTTTT 59.582 34.615 0.00 0.00 35.70 2.43
1707 1726 7.589587 CACTGTCATTGCTTGAAATACGTTTTA 59.410 33.333 0.00 0.00 35.70 1.52
1708 1727 8.296713 ACTGTCATTGCTTGAAATACGTTTTAT 58.703 29.630 0.00 0.00 35.70 1.40
1709 1728 9.128107 CTGTCATTGCTTGAAATACGTTTTATT 57.872 29.630 0.00 0.00 35.70 1.40
1716 1735 9.781834 TGCTTGAAATACGTTTTATTATCTTGG 57.218 29.630 0.00 0.00 0.00 3.61
1717 1736 8.743099 GCTTGAAATACGTTTTATTATCTTGGC 58.257 33.333 0.00 0.00 0.00 4.52
1718 1737 9.781834 CTTGAAATACGTTTTATTATCTTGGCA 57.218 29.630 0.00 0.00 0.00 4.92
1719 1738 9.562583 TTGAAATACGTTTTATTATCTTGGCAC 57.437 29.630 0.00 0.00 0.00 5.01
1720 1739 8.731605 TGAAATACGTTTTATTATCTTGGCACA 58.268 29.630 0.00 0.00 0.00 4.57
1721 1740 9.730420 GAAATACGTTTTATTATCTTGGCACAT 57.270 29.630 0.00 0.00 39.30 3.21
1722 1741 9.515020 AAATACGTTTTATTATCTTGGCACATG 57.485 29.630 0.00 0.00 39.30 3.21
1723 1742 6.751514 ACGTTTTATTATCTTGGCACATGA 57.248 33.333 0.00 0.00 46.38 3.07
1724 1743 7.151999 ACGTTTTATTATCTTGGCACATGAA 57.848 32.000 0.00 0.00 45.49 2.57
1725 1744 7.771183 ACGTTTTATTATCTTGGCACATGAAT 58.229 30.769 0.00 0.00 45.49 2.57
1726 1745 8.250332 ACGTTTTATTATCTTGGCACATGAATT 58.750 29.630 0.00 0.00 45.49 2.17
1727 1746 9.086336 CGTTTTATTATCTTGGCACATGAATTT 57.914 29.630 0.00 0.00 45.49 1.82
1732 1751 8.712285 ATTATCTTGGCACATGAATTTTCTTG 57.288 30.769 0.00 5.03 45.49 3.02
1733 1752 5.787953 TCTTGGCACATGAATTTTCTTGA 57.212 34.783 0.00 0.00 39.60 3.02
1734 1753 6.349243 TCTTGGCACATGAATTTTCTTGAT 57.651 33.333 0.00 0.00 39.60 2.57
1735 1754 6.761312 TCTTGGCACATGAATTTTCTTGATT 58.239 32.000 0.00 0.00 39.60 2.57
1736 1755 7.894708 TCTTGGCACATGAATTTTCTTGATTA 58.105 30.769 0.00 0.00 39.60 1.75
1737 1756 8.030692 TCTTGGCACATGAATTTTCTTGATTAG 58.969 33.333 0.00 4.07 39.60 1.73
1738 1757 7.465353 TGGCACATGAATTTTCTTGATTAGA 57.535 32.000 0.00 0.00 36.27 2.10
1739 1758 7.315142 TGGCACATGAATTTTCTTGATTAGAC 58.685 34.615 0.00 3.71 36.27 2.59
1740 1759 7.177216 TGGCACATGAATTTTCTTGATTAGACT 59.823 33.333 0.00 0.00 36.27 3.24
1741 1760 8.031277 GGCACATGAATTTTCTTGATTAGACTT 58.969 33.333 0.00 0.00 36.27 3.01
1767 1786 4.439253 AATTGGATAGAGTTGGGGTAGC 57.561 45.455 0.00 0.00 0.00 3.58
1768 1787 2.561209 TGGATAGAGTTGGGGTAGCA 57.439 50.000 0.00 0.00 0.00 3.49
1769 1788 2.116238 TGGATAGAGTTGGGGTAGCAC 58.884 52.381 0.00 0.00 0.00 4.40
1770 1789 1.416772 GGATAGAGTTGGGGTAGCACC 59.583 57.143 0.00 0.00 37.60 5.01
1771 1790 2.116238 GATAGAGTTGGGGTAGCACCA 58.884 52.381 7.49 0.00 41.02 4.17
1772 1791 2.032965 TAGAGTTGGGGTAGCACCAA 57.967 50.000 9.86 9.86 45.25 3.67
1777 1796 2.917713 TTGGGGTAGCACCAATTGAT 57.082 45.000 7.12 0.00 42.75 2.57
1778 1797 2.142356 TGGGGTAGCACCAATTGATG 57.858 50.000 7.12 0.00 41.02 3.07
1779 1798 1.638070 TGGGGTAGCACCAATTGATGA 59.362 47.619 3.20 0.00 41.02 2.92
1780 1799 2.301346 GGGGTAGCACCAATTGATGAG 58.699 52.381 3.20 0.00 41.02 2.90
1781 1800 2.357154 GGGGTAGCACCAATTGATGAGT 60.357 50.000 3.20 0.00 41.02 3.41
1782 1801 3.118038 GGGGTAGCACCAATTGATGAGTA 60.118 47.826 3.20 0.00 41.02 2.59
1783 1802 4.130118 GGGTAGCACCAATTGATGAGTAG 58.870 47.826 3.20 0.00 41.02 2.57
1784 1803 3.561725 GGTAGCACCAATTGATGAGTAGC 59.438 47.826 3.20 0.04 38.42 3.58
1785 1804 3.641434 AGCACCAATTGATGAGTAGCT 57.359 42.857 3.20 4.26 0.00 3.32
1786 1805 3.960571 AGCACCAATTGATGAGTAGCTT 58.039 40.909 3.20 0.00 0.00 3.74
1787 1806 3.693085 AGCACCAATTGATGAGTAGCTTG 59.307 43.478 3.20 0.00 0.00 4.01
1788 1807 3.441572 GCACCAATTGATGAGTAGCTTGT 59.558 43.478 3.20 0.00 0.00 3.16
1789 1808 4.082571 GCACCAATTGATGAGTAGCTTGTT 60.083 41.667 3.20 0.00 0.00 2.83
1790 1809 5.634896 CACCAATTGATGAGTAGCTTGTTC 58.365 41.667 7.12 0.00 0.00 3.18
1791 1810 5.181811 CACCAATTGATGAGTAGCTTGTTCA 59.818 40.000 7.12 0.00 0.00 3.18
1792 1811 5.769662 ACCAATTGATGAGTAGCTTGTTCAA 59.230 36.000 7.12 0.00 0.00 2.69
1793 1812 6.088824 CCAATTGATGAGTAGCTTGTTCAAC 58.911 40.000 7.12 0.00 0.00 3.18
1794 1813 6.294120 CCAATTGATGAGTAGCTTGTTCAACA 60.294 38.462 7.12 0.00 0.00 3.33
1795 1814 7.310664 CAATTGATGAGTAGCTTGTTCAACAT 58.689 34.615 0.00 0.00 0.00 2.71
1796 1815 6.882610 TTGATGAGTAGCTTGTTCAACATT 57.117 33.333 0.00 0.00 0.00 2.71
1797 1816 6.245115 TGATGAGTAGCTTGTTCAACATTG 57.755 37.500 0.00 0.00 0.00 2.82
1798 1817 5.764686 TGATGAGTAGCTTGTTCAACATTGT 59.235 36.000 0.00 0.00 0.00 2.71
1799 1818 5.673337 TGAGTAGCTTGTTCAACATTGTC 57.327 39.130 0.00 0.00 0.00 3.18
1800 1819 5.368145 TGAGTAGCTTGTTCAACATTGTCT 58.632 37.500 0.00 0.00 0.00 3.41
1801 1820 5.237127 TGAGTAGCTTGTTCAACATTGTCTG 59.763 40.000 0.00 0.00 0.00 3.51
1802 1821 5.368145 AGTAGCTTGTTCAACATTGTCTGA 58.632 37.500 0.00 0.00 0.00 3.27
1803 1822 4.825546 AGCTTGTTCAACATTGTCTGAG 57.174 40.909 0.00 0.00 0.00 3.35
1804 1823 4.454678 AGCTTGTTCAACATTGTCTGAGA 58.545 39.130 0.00 0.00 0.00 3.27
1805 1824 5.068636 AGCTTGTTCAACATTGTCTGAGAT 58.931 37.500 0.00 0.00 0.00 2.75
1806 1825 5.048921 AGCTTGTTCAACATTGTCTGAGATG 60.049 40.000 0.00 0.76 0.00 2.90
1807 1826 5.694231 TTGTTCAACATTGTCTGAGATGG 57.306 39.130 0.00 0.00 0.00 3.51
1808 1827 4.717877 TGTTCAACATTGTCTGAGATGGT 58.282 39.130 0.00 0.00 0.00 3.55
1809 1828 5.132502 TGTTCAACATTGTCTGAGATGGTT 58.867 37.500 0.00 0.00 0.00 3.67
1810 1829 5.593909 TGTTCAACATTGTCTGAGATGGTTT 59.406 36.000 0.00 0.00 0.00 3.27
1811 1830 5.694231 TCAACATTGTCTGAGATGGTTTG 57.306 39.130 0.00 3.41 0.00 2.93
1812 1831 4.520111 TCAACATTGTCTGAGATGGTTTGG 59.480 41.667 0.00 0.00 0.00 3.28
1813 1832 3.424703 ACATTGTCTGAGATGGTTTGGG 58.575 45.455 6.08 0.00 0.00 4.12
1814 1833 1.909700 TTGTCTGAGATGGTTTGGGC 58.090 50.000 0.00 0.00 0.00 5.36
1815 1834 0.770499 TGTCTGAGATGGTTTGGGCA 59.230 50.000 0.00 0.00 0.00 5.36
1816 1835 1.355381 TGTCTGAGATGGTTTGGGCAT 59.645 47.619 0.00 0.00 0.00 4.40
1817 1836 2.575735 TGTCTGAGATGGTTTGGGCATA 59.424 45.455 0.00 0.00 0.00 3.14
1818 1837 3.202818 TGTCTGAGATGGTTTGGGCATAT 59.797 43.478 0.00 0.00 0.00 1.78
1819 1838 4.210331 GTCTGAGATGGTTTGGGCATATT 58.790 43.478 0.00 0.00 0.00 1.28
1820 1839 4.276926 GTCTGAGATGGTTTGGGCATATTC 59.723 45.833 0.00 0.00 0.00 1.75
1821 1840 4.079844 TCTGAGATGGTTTGGGCATATTCA 60.080 41.667 0.00 0.00 0.00 2.57
1822 1841 4.209538 TGAGATGGTTTGGGCATATTCAG 58.790 43.478 0.00 0.00 0.00 3.02
1823 1842 2.961062 AGATGGTTTGGGCATATTCAGC 59.039 45.455 0.00 0.00 0.00 4.26
1824 1843 1.102154 TGGTTTGGGCATATTCAGCG 58.898 50.000 0.00 0.00 0.00 5.18
1825 1844 0.249031 GGTTTGGGCATATTCAGCGC 60.249 55.000 0.00 0.00 44.24 5.92
1828 1847 3.348236 GGGCATATTCAGCGCAGG 58.652 61.111 11.47 0.20 43.54 4.85
1829 1848 2.641559 GGCATATTCAGCGCAGGC 59.358 61.111 11.47 0.29 40.37 4.85
1830 1849 2.641559 GCATATTCAGCGCAGGCC 59.358 61.111 11.47 0.00 41.24 5.19
1831 1850 1.895707 GCATATTCAGCGCAGGCCT 60.896 57.895 11.47 0.00 41.24 5.19
1832 1851 1.849976 GCATATTCAGCGCAGGCCTC 61.850 60.000 11.47 0.00 41.24 4.70
1833 1852 1.072159 ATATTCAGCGCAGGCCTCC 59.928 57.895 11.47 0.00 41.24 4.30
1834 1853 1.699054 ATATTCAGCGCAGGCCTCCA 61.699 55.000 11.47 0.00 41.24 3.86
1835 1854 2.315781 TATTCAGCGCAGGCCTCCAG 62.316 60.000 11.47 0.00 41.24 3.86
1837 1856 4.399395 CAGCGCAGGCCTCCAGAA 62.399 66.667 11.47 0.00 41.24 3.02
1838 1857 4.093291 AGCGCAGGCCTCCAGAAG 62.093 66.667 11.47 0.00 41.24 2.85
1840 1859 4.093291 CGCAGGCCTCCAGAAGCT 62.093 66.667 0.00 0.00 0.00 3.74
1841 1860 2.124778 GCAGGCCTCCAGAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
1842 1861 2.588989 CAGGCCTCCAGAAGCTCC 59.411 66.667 0.00 0.00 0.00 4.70
1843 1862 2.123632 AGGCCTCCAGAAGCTCCA 59.876 61.111 0.00 0.00 0.00 3.86
1844 1863 1.994507 AGGCCTCCAGAAGCTCCAG 60.995 63.158 0.00 0.00 0.00 3.86
1845 1864 2.297129 GGCCTCCAGAAGCTCCAGT 61.297 63.158 0.00 0.00 0.00 4.00
1846 1865 1.078567 GCCTCCAGAAGCTCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
1847 1866 1.078567 CCTCCAGAAGCTCCAGTGC 60.079 63.158 0.00 0.00 0.00 4.40
1848 1867 1.675801 CTCCAGAAGCTCCAGTGCA 59.324 57.895 0.00 0.00 34.99 4.57
1849 1868 0.252479 CTCCAGAAGCTCCAGTGCAT 59.748 55.000 0.00 0.00 34.99 3.96
1850 1869 1.483827 CTCCAGAAGCTCCAGTGCATA 59.516 52.381 0.00 0.00 34.99 3.14
1851 1870 1.483827 TCCAGAAGCTCCAGTGCATAG 59.516 52.381 0.00 0.00 34.99 2.23
1852 1871 1.297664 CAGAAGCTCCAGTGCATAGC 58.702 55.000 0.00 0.00 36.48 2.97
1853 1872 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.00 41.19 4.26
1854 1873 1.153289 AAGCTCCAGTGCATAGCGG 60.153 57.895 0.00 0.00 41.19 5.52
1855 1874 1.617018 AAGCTCCAGTGCATAGCGGA 61.617 55.000 0.00 0.00 41.19 5.54
1856 1875 1.884926 GCTCCAGTGCATAGCGGAC 60.885 63.158 0.00 0.00 35.88 4.79
1857 1876 1.589993 CTCCAGTGCATAGCGGACG 60.590 63.158 0.00 0.00 41.69 4.79
1858 1877 2.586079 CCAGTGCATAGCGGACGG 60.586 66.667 0.00 0.00 41.69 4.79
1859 1878 3.264897 CAGTGCATAGCGGACGGC 61.265 66.667 0.00 0.00 41.69 5.68
2168 2187 4.789012 CATTGGTTGATTGGTAACTGCT 57.211 40.909 0.00 0.00 37.61 4.24
2169 2188 5.138125 CATTGGTTGATTGGTAACTGCTT 57.862 39.130 0.00 0.00 37.61 3.91
2170 2189 4.582701 TTGGTTGATTGGTAACTGCTTG 57.417 40.909 0.00 0.00 37.61 4.01
2171 2190 3.826524 TGGTTGATTGGTAACTGCTTGA 58.173 40.909 0.00 0.00 37.61 3.02
2172 2191 4.406456 TGGTTGATTGGTAACTGCTTGAT 58.594 39.130 0.00 0.00 37.61 2.57
2173 2192 4.832266 TGGTTGATTGGTAACTGCTTGATT 59.168 37.500 0.00 0.00 37.61 2.57
2174 2193 5.163513 GGTTGATTGGTAACTGCTTGATTG 58.836 41.667 0.00 0.00 37.61 2.67
2175 2194 5.048083 GGTTGATTGGTAACTGCTTGATTGA 60.048 40.000 0.00 0.00 37.61 2.57
2176 2195 5.885230 TGATTGGTAACTGCTTGATTGAG 57.115 39.130 0.00 0.00 37.61 3.02
2177 2196 4.156556 TGATTGGTAACTGCTTGATTGAGC 59.843 41.667 0.00 0.00 43.00 4.26
2178 2197 2.436417 TGGTAACTGCTTGATTGAGCC 58.564 47.619 0.00 0.00 42.01 4.70
2179 2198 1.745653 GGTAACTGCTTGATTGAGCCC 59.254 52.381 0.00 0.00 42.01 5.19
2180 2199 2.436417 GTAACTGCTTGATTGAGCCCA 58.564 47.619 0.00 0.00 42.01 5.36
2181 2200 1.999648 AACTGCTTGATTGAGCCCAA 58.000 45.000 0.00 0.00 42.01 4.12
2182 2201 1.999648 ACTGCTTGATTGAGCCCAAA 58.000 45.000 0.00 0.00 42.01 3.28
2183 2202 1.615392 ACTGCTTGATTGAGCCCAAAC 59.385 47.619 0.00 0.00 42.01 2.93
2184 2203 1.614903 CTGCTTGATTGAGCCCAAACA 59.385 47.619 0.00 0.00 42.01 2.83
2185 2204 2.232941 CTGCTTGATTGAGCCCAAACAT 59.767 45.455 0.00 0.00 42.01 2.71
2186 2205 2.028839 TGCTTGATTGAGCCCAAACATG 60.029 45.455 0.00 0.00 42.01 3.21
2187 2206 2.675889 GCTTGATTGAGCCCAAACATGG 60.676 50.000 0.00 0.00 35.46 3.66
2194 2213 3.059099 CCCAAACATGGCACCACC 58.941 61.111 0.00 0.00 39.84 4.61
2319 2338 6.882610 TTGATGAGTAGCTTGTTCAACATT 57.117 33.333 0.00 0.00 0.00 2.71
2360 2379 4.399395 CAGCGCAGGCCTCCAGAA 62.399 66.667 11.47 0.00 41.24 3.02
2361 2380 4.093291 AGCGCAGGCCTCCAGAAG 62.093 66.667 11.47 0.00 41.24 2.85
2363 2382 4.093291 CGCAGGCCTCCAGAAGCT 62.093 66.667 0.00 0.00 0.00 3.74
2364 2383 2.124778 GCAGGCCTCCAGAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
2365 2384 2.588989 CAGGCCTCCAGAAGCTCC 59.411 66.667 0.00 0.00 0.00 4.70
2366 2385 2.123632 AGGCCTCCAGAAGCTCCA 59.876 61.111 0.00 0.00 0.00 3.86
2367 2386 1.994507 AGGCCTCCAGAAGCTCCAG 60.995 63.158 0.00 0.00 0.00 3.86
2368 2387 2.297129 GGCCTCCAGAAGCTCCAGT 61.297 63.158 0.00 0.00 0.00 4.00
2369 2388 1.078567 GCCTCCAGAAGCTCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
2370 2389 1.078567 CCTCCAGAAGCTCCAGTGC 60.079 63.158 0.00 0.00 0.00 4.40
2371 2390 1.675801 CTCCAGAAGCTCCAGTGCA 59.324 57.895 0.00 0.00 34.99 4.57
2372 2391 0.252479 CTCCAGAAGCTCCAGTGCAT 59.748 55.000 0.00 0.00 34.99 3.96
2373 2392 1.483827 CTCCAGAAGCTCCAGTGCATA 59.516 52.381 0.00 0.00 34.99 3.14
2374 2393 1.483827 TCCAGAAGCTCCAGTGCATAG 59.516 52.381 0.00 0.00 34.99 2.23
2375 2394 1.297664 CAGAAGCTCCAGTGCATAGC 58.702 55.000 0.00 0.00 36.48 2.97
2376 2395 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.00 41.19 4.26
2377 2396 1.153289 AAGCTCCAGTGCATAGCGG 60.153 57.895 0.00 0.00 41.19 5.52
2378 2397 1.617018 AAGCTCCAGTGCATAGCGGA 61.617 55.000 0.00 0.00 41.19 5.54
2379 2398 1.884926 GCTCCAGTGCATAGCGGAC 60.885 63.158 0.00 0.00 35.88 4.79
2380 2399 1.589993 CTCCAGTGCATAGCGGACG 60.590 63.158 0.00 0.00 41.69 4.79
2381 2400 2.586079 CCAGTGCATAGCGGACGG 60.586 66.667 0.00 0.00 41.69 4.79
2382 2401 3.264897 CAGTGCATAGCGGACGGC 61.265 66.667 0.00 0.00 41.69 5.68
2391 2410 3.165498 GCGGACGGCTAAAGTGTG 58.835 61.111 0.00 0.00 39.11 3.82
2392 2411 1.373748 GCGGACGGCTAAAGTGTGA 60.374 57.895 0.00 0.00 39.11 3.58
2393 2412 1.352156 GCGGACGGCTAAAGTGTGAG 61.352 60.000 0.00 0.00 39.11 3.51
2394 2413 0.242825 CGGACGGCTAAAGTGTGAGA 59.757 55.000 0.00 0.00 0.00 3.27
2395 2414 1.135083 CGGACGGCTAAAGTGTGAGAT 60.135 52.381 0.00 0.00 0.00 2.75
2396 2415 2.271800 GGACGGCTAAAGTGTGAGATG 58.728 52.381 0.00 0.00 0.00 2.90
2397 2416 2.271800 GACGGCTAAAGTGTGAGATGG 58.728 52.381 0.00 0.00 0.00 3.51
2398 2417 1.623811 ACGGCTAAAGTGTGAGATGGT 59.376 47.619 0.00 0.00 0.00 3.55
2399 2418 2.038557 ACGGCTAAAGTGTGAGATGGTT 59.961 45.455 0.00 0.00 0.00 3.67
2400 2419 3.074412 CGGCTAAAGTGTGAGATGGTTT 58.926 45.455 0.00 0.00 0.00 3.27
2401 2420 3.120199 CGGCTAAAGTGTGAGATGGTTTG 60.120 47.826 0.00 0.00 0.00 2.93
2402 2421 3.191371 GGCTAAAGTGTGAGATGGTTTGG 59.809 47.826 0.00 0.00 0.00 3.28
2403 2422 3.191371 GCTAAAGTGTGAGATGGTTTGGG 59.809 47.826 0.00 0.00 0.00 4.12
2404 2423 1.620822 AAGTGTGAGATGGTTTGGGC 58.379 50.000 0.00 0.00 0.00 5.36
2405 2424 0.478072 AGTGTGAGATGGTTTGGGCA 59.522 50.000 0.00 0.00 0.00 5.36
2406 2425 1.076024 AGTGTGAGATGGTTTGGGCAT 59.924 47.619 0.00 0.00 0.00 4.40
2407 2426 2.308570 AGTGTGAGATGGTTTGGGCATA 59.691 45.455 0.00 0.00 0.00 3.14
2408 2427 3.053395 AGTGTGAGATGGTTTGGGCATAT 60.053 43.478 0.00 0.00 0.00 1.78
2409 2428 3.701040 GTGTGAGATGGTTTGGGCATATT 59.299 43.478 0.00 0.00 0.00 1.28
2410 2429 3.953612 TGTGAGATGGTTTGGGCATATTC 59.046 43.478 0.00 0.00 0.00 1.75
2411 2430 3.953612 GTGAGATGGTTTGGGCATATTCA 59.046 43.478 0.00 0.00 0.00 2.57
2412 2431 4.037208 GTGAGATGGTTTGGGCATATTCAG 59.963 45.833 0.00 0.00 0.00 3.02
2413 2432 2.961062 AGATGGTTTGGGCATATTCAGC 59.039 45.455 0.00 0.00 0.00 4.26
2414 2433 1.102154 TGGTTTGGGCATATTCAGCG 58.898 50.000 0.00 0.00 0.00 5.18
2415 2434 0.249031 GGTTTGGGCATATTCAGCGC 60.249 55.000 0.00 0.00 44.24 5.92
2418 2437 3.348236 GGGCATATTCAGCGCAGG 58.652 61.111 11.47 0.20 43.54 4.85
2419 2438 2.641559 GGCATATTCAGCGCAGGC 59.358 61.111 11.47 0.29 40.37 4.85
2420 2439 2.641559 GCATATTCAGCGCAGGCC 59.358 61.111 11.47 0.00 41.24 5.19
2421 2440 1.895707 GCATATTCAGCGCAGGCCT 60.896 57.895 11.47 0.00 41.24 5.19
2422 2441 1.849976 GCATATTCAGCGCAGGCCTC 61.850 60.000 11.47 0.00 41.24 4.70
2423 2442 1.072159 ATATTCAGCGCAGGCCTCC 59.928 57.895 11.47 0.00 41.24 4.30
2424 2443 1.699054 ATATTCAGCGCAGGCCTCCA 61.699 55.000 11.47 0.00 41.24 3.86
2425 2444 2.315781 TATTCAGCGCAGGCCTCCAG 62.316 60.000 11.47 0.00 41.24 3.86
2427 2446 4.399395 CAGCGCAGGCCTCCAGAA 62.399 66.667 11.47 0.00 41.24 3.02
2479 2498 2.737039 GCGGAGAATGTCAAGAGAGGTC 60.737 54.545 0.00 0.00 0.00 3.85
2502 2521 2.943033 GGGTAGACCGAATTTGACATGG 59.057 50.000 0.00 0.00 36.71 3.66
3123 3605 5.009631 CCTGTGATCCAAACAACCATCTTA 58.990 41.667 0.00 0.00 0.00 2.10
3363 3845 4.341235 ACTTGTTTGGGACTAAAGGCTTTC 59.659 41.667 17.13 1.89 0.00 2.62
3364 3846 4.178956 TGTTTGGGACTAAAGGCTTTCT 57.821 40.909 17.13 2.51 0.00 2.52
3365 3847 4.542697 TGTTTGGGACTAAAGGCTTTCTT 58.457 39.130 17.13 4.22 37.28 2.52
3651 4133 8.243391 ACCAAACAGGCCCATAAATCTTTATGA 61.243 37.037 19.46 0.00 45.44 2.15
3734 4216 6.016276 TGTTTCTTTCCTCCTGTTTGATAAGC 60.016 38.462 0.00 0.00 0.00 3.09
3999 4481 4.592778 ACCATCATTTAGTGGTGCCTTTTT 59.407 37.500 0.00 0.00 46.55 1.94
4177 4659 5.105567 TGGCTTTGATATAAAACCGGAGA 57.894 39.130 9.46 0.00 0.00 3.71
4385 4867 4.513442 TGCCTCGTTGCTTTATTACTGAT 58.487 39.130 1.05 0.00 0.00 2.90
4530 5012 7.069085 CCTTCAGGATGTGTCATCCATTAATTT 59.931 37.037 24.56 5.41 40.61 1.82
4668 5150 0.249238 TTTGCACATTTGACGGGCAC 60.249 50.000 0.00 0.00 33.66 5.01
4755 5237 4.588899 AGTTAGTGGCTGATGCACATAAA 58.411 39.130 0.00 0.00 41.91 1.40
5018 5503 3.627395 TTCTGCCCATTCGTAGTGATT 57.373 42.857 0.00 0.00 0.00 2.57
5181 5666 3.304391 GCATGAGCGTTTTCAACCAAGTA 60.304 43.478 0.00 0.00 0.00 2.24
5206 5691 7.547227 ACCTTTTGTAAGCTTTGCCTATTATG 58.453 34.615 3.20 0.00 0.00 1.90
5347 5832 3.619483 TGTGTCCGTACAACAAGTTCAAG 59.381 43.478 0.00 0.00 37.36 3.02
5513 5998 0.650512 CTAGTACAAATGCCCGTGCG 59.349 55.000 0.00 0.00 41.78 5.34
5515 6000 1.133869 GTACAAATGCCCGTGCGTC 59.866 57.895 0.00 0.00 41.78 5.19
5535 6020 1.022451 GCAACGGGCGTGGAATCTTA 61.022 55.000 0.00 0.00 0.00 2.10
5547 6032 4.378459 CGTGGAATCTTACAAAACCTGCTC 60.378 45.833 0.00 0.00 0.00 4.26
5551 6036 5.885912 GGAATCTTACAAAACCTGCTCCATA 59.114 40.000 0.00 0.00 0.00 2.74
5556 6041 3.009723 ACAAAACCTGCTCCATATGTCG 58.990 45.455 1.24 0.00 0.00 4.35
5570 6055 7.307219 GCTCCATATGTCGTTAGGTACAATTTC 60.307 40.741 1.24 0.00 0.00 2.17
5571 6056 6.987992 TCCATATGTCGTTAGGTACAATTTCC 59.012 38.462 1.24 0.00 0.00 3.13
5572 6057 6.204108 CCATATGTCGTTAGGTACAATTTCCC 59.796 42.308 1.24 0.00 0.00 3.97
5573 6058 4.895668 TGTCGTTAGGTACAATTTCCCT 57.104 40.909 0.00 0.00 0.00 4.20
5577 6062 6.546772 TGTCGTTAGGTACAATTTCCCTTTTT 59.453 34.615 0.00 0.00 0.00 1.94
5578 6063 7.080099 GTCGTTAGGTACAATTTCCCTTTTTC 58.920 38.462 0.00 0.00 0.00 2.29
5579 6064 6.999871 TCGTTAGGTACAATTTCCCTTTTTCT 59.000 34.615 0.00 0.00 0.00 2.52
5581 6066 7.593644 CGTTAGGTACAATTTCCCTTTTTCTTG 59.406 37.037 0.00 0.00 0.00 3.02
5582 6067 8.635328 GTTAGGTACAATTTCCCTTTTTCTTGA 58.365 33.333 0.00 0.00 0.00 3.02
5583 6068 7.290110 AGGTACAATTTCCCTTTTTCTTGAG 57.710 36.000 0.00 0.00 0.00 3.02
5584 6069 5.926542 GGTACAATTTCCCTTTTTCTTGAGC 59.073 40.000 0.00 0.00 0.00 4.26
5585 6070 5.612725 ACAATTTCCCTTTTTCTTGAGCA 57.387 34.783 0.00 0.00 0.00 4.26
5586 6071 5.604565 ACAATTTCCCTTTTTCTTGAGCAG 58.395 37.500 0.00 0.00 0.00 4.24
5587 6072 4.879197 ATTTCCCTTTTTCTTGAGCAGG 57.121 40.909 0.00 0.00 0.00 4.85
5617 6102 6.543831 GCTGTGATTTATTAACCAGTCTCCAT 59.456 38.462 0.00 0.00 0.00 3.41
5620 6105 7.339212 TGTGATTTATTAACCAGTCTCCATTGG 59.661 37.037 0.00 0.00 40.38 3.16
5625 6110 2.867109 ACCAGTCTCCATTGGTTCTG 57.133 50.000 1.86 9.42 45.16 3.02
5628 6120 2.304180 CCAGTCTCCATTGGTTCTGAGT 59.696 50.000 18.44 8.30 0.00 3.41
5636 6128 6.065976 TCCATTGGTTCTGAGTGTGATAAT 57.934 37.500 1.86 0.00 0.00 1.28
5647 6139 2.276201 GTGTGATAATACACGCTGGCA 58.724 47.619 0.00 0.00 44.58 4.92
5648 6140 2.675844 GTGTGATAATACACGCTGGCAA 59.324 45.455 0.00 0.00 44.58 4.52
5654 6146 1.372582 ATACACGCTGGCAAGACATG 58.627 50.000 0.00 0.00 0.00 3.21
5680 6172 8.088365 GGAACCATGTTTTACAAAGCTTATTCT 58.912 33.333 0.00 0.00 0.00 2.40
5681 6173 9.476202 GAACCATGTTTTACAAAGCTTATTCTT 57.524 29.630 0.00 0.00 0.00 2.52
5708 6207 6.472686 ACAACTAAAACATGGGCAACTTTA 57.527 33.333 0.00 0.00 0.00 1.85
5712 6211 7.539034 ACTAAAACATGGGCAACTTTATTCT 57.461 32.000 0.00 0.00 0.00 2.40
5728 6227 0.878523 TTCTTGAACGACGCACCCAG 60.879 55.000 0.00 0.00 0.00 4.45
5744 6243 0.178992 CCAGCAAACCTTGGACTCCA 60.179 55.000 0.00 0.00 0.00 3.86
5760 6259 5.781452 GACTCCACGAAGTCCTAAATTTC 57.219 43.478 0.00 0.00 41.61 2.17
5763 6262 6.296803 ACTCCACGAAGTCCTAAATTTCTTT 58.703 36.000 0.00 0.00 41.61 2.52
5764 6263 6.204882 ACTCCACGAAGTCCTAAATTTCTTTG 59.795 38.462 0.00 0.00 41.61 2.77
5766 6265 6.204108 TCCACGAAGTCCTAAATTTCTTTGTC 59.796 38.462 7.09 0.00 41.61 3.18
5767 6266 6.017440 CCACGAAGTCCTAAATTTCTTTGTCA 60.017 38.462 7.09 0.00 41.61 3.58
5769 6268 8.717821 CACGAAGTCCTAAATTTCTTTGTCATA 58.282 33.333 7.09 0.00 41.61 2.15
5789 6290 9.719355 TGTCATATACGCACCATTTCTTATATT 57.281 29.630 0.00 0.00 0.00 1.28
5795 6296 7.016361 ACGCACCATTTCTTATATTCAGTTC 57.984 36.000 0.00 0.00 0.00 3.01
5798 6299 8.993121 CGCACCATTTCTTATATTCAGTTCTAT 58.007 33.333 0.00 0.00 0.00 1.98
5834 6339 7.744087 ACTAATGTTACATTGTTGCTTCTCA 57.256 32.000 19.55 0.00 0.00 3.27
5852 6357 5.418310 TCTCAGTTGAATTTTGGTCGTTC 57.582 39.130 0.00 0.00 0.00 3.95
5854 6359 5.355630 TCTCAGTTGAATTTTGGTCGTTCAA 59.644 36.000 0.00 0.00 38.95 2.69
5862 6367 0.741915 TTGGTCGTTCAAAAGCCACC 59.258 50.000 0.00 0.00 0.00 4.61
5863 6368 0.394488 TGGTCGTTCAAAAGCCACCA 60.394 50.000 0.00 0.00 0.00 4.17
5892 6397 5.147330 TCTTCGCCTAATTGAAGACTTCA 57.853 39.130 13.99 13.99 44.11 3.02
5894 6399 5.582269 TCTTCGCCTAATTGAAGACTTCATG 59.418 40.000 18.38 9.22 44.11 3.07
5895 6400 4.191544 TCGCCTAATTGAAGACTTCATGG 58.808 43.478 18.38 17.08 39.84 3.66
5896 6401 4.081142 TCGCCTAATTGAAGACTTCATGGA 60.081 41.667 18.38 4.66 39.84 3.41
5898 6403 5.189180 GCCTAATTGAAGACTTCATGGAGT 58.811 41.667 18.38 6.28 39.84 3.85
5899 6404 5.065731 GCCTAATTGAAGACTTCATGGAGTG 59.934 44.000 18.38 7.54 39.84 3.51
5900 6405 6.176183 CCTAATTGAAGACTTCATGGAGTGT 58.824 40.000 18.38 4.19 39.84 3.55
5902 6407 6.966534 AATTGAAGACTTCATGGAGTGTTT 57.033 33.333 17.14 8.83 39.84 2.83
5904 6409 5.034852 TGAAGACTTCATGGAGTGTTTGA 57.965 39.130 17.14 5.45 33.78 2.69
5908 6413 5.624159 AGACTTCATGGAGTGTTTGATTCA 58.376 37.500 12.64 0.00 0.00 2.57
5910 6415 5.380043 ACTTCATGGAGTGTTTGATTCAGT 58.620 37.500 5.64 0.00 0.00 3.41
5911 6416 5.829924 ACTTCATGGAGTGTTTGATTCAGTT 59.170 36.000 5.64 0.00 0.00 3.16
5942 6455 8.472683 TTTCATTTCAGAAAACACGATTTTGT 57.527 26.923 0.00 1.22 34.77 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.441348 TCGCCCCATCGCTGTCTA 60.441 61.111 0.00 0.00 0.00 2.59
175 194 4.778415 CGTCGGGCGGTGACTCAG 62.778 72.222 0.00 0.00 36.85 3.35
1220 1239 4.407365 AGGAAAAGGTGGAACTAACATGG 58.593 43.478 0.00 0.00 36.74 3.66
1259 1278 8.726988 TGGTGTTTGTAGCAGTATTAAGAAATC 58.273 33.333 0.00 0.00 0.00 2.17
1420 1439 1.073897 GCTCCATAGGGCCATCCAC 59.926 63.158 6.18 0.00 38.24 4.02
1558 1577 1.066573 CGTCTCTGGGCTCAATCAAGT 60.067 52.381 0.00 0.00 0.00 3.16
1569 1588 2.359981 TGGATAGTACCGTCTCTGGG 57.640 55.000 0.00 0.00 0.00 4.45
1676 1695 4.818534 TTCAAGCAATGACAGTGTTCTC 57.181 40.909 4.63 0.00 37.92 2.87
1677 1696 5.779529 ATTTCAAGCAATGACAGTGTTCT 57.220 34.783 4.63 0.00 37.92 3.01
1678 1697 5.565259 CGTATTTCAAGCAATGACAGTGTTC 59.435 40.000 4.63 0.00 37.92 3.18
1679 1698 5.008613 ACGTATTTCAAGCAATGACAGTGTT 59.991 36.000 4.63 0.00 37.92 3.32
1680 1699 4.515191 ACGTATTTCAAGCAATGACAGTGT 59.485 37.500 4.63 0.00 37.92 3.55
1681 1700 5.034554 ACGTATTTCAAGCAATGACAGTG 57.965 39.130 0.00 0.00 37.92 3.66
1682 1701 5.689383 AACGTATTTCAAGCAATGACAGT 57.311 34.783 0.00 0.00 37.92 3.55
1683 1702 6.991485 AAAACGTATTTCAAGCAATGACAG 57.009 33.333 0.00 0.00 37.92 3.51
1690 1709 9.781834 CCAAGATAATAAAACGTATTTCAAGCA 57.218 29.630 0.00 0.00 0.00 3.91
1691 1710 8.743099 GCCAAGATAATAAAACGTATTTCAAGC 58.257 33.333 0.00 0.00 0.00 4.01
1692 1711 9.781834 TGCCAAGATAATAAAACGTATTTCAAG 57.218 29.630 0.00 0.00 0.00 3.02
1693 1712 9.562583 GTGCCAAGATAATAAAACGTATTTCAA 57.437 29.630 0.00 0.00 0.00 2.69
1694 1713 8.731605 TGTGCCAAGATAATAAAACGTATTTCA 58.268 29.630 0.00 0.00 0.00 2.69
1695 1714 9.730420 ATGTGCCAAGATAATAAAACGTATTTC 57.270 29.630 0.00 0.00 0.00 2.17
1696 1715 9.515020 CATGTGCCAAGATAATAAAACGTATTT 57.485 29.630 0.00 0.00 0.00 1.40
1697 1716 8.898761 TCATGTGCCAAGATAATAAAACGTATT 58.101 29.630 0.00 0.00 0.00 1.89
1698 1717 8.445275 TCATGTGCCAAGATAATAAAACGTAT 57.555 30.769 0.00 0.00 0.00 3.06
1699 1718 7.851387 TCATGTGCCAAGATAATAAAACGTA 57.149 32.000 0.00 0.00 0.00 3.57
1700 1719 6.751514 TCATGTGCCAAGATAATAAAACGT 57.248 33.333 0.00 0.00 0.00 3.99
1701 1720 8.633075 AATTCATGTGCCAAGATAATAAAACG 57.367 30.769 0.00 0.00 0.00 3.60
1706 1725 9.806203 CAAGAAAATTCATGTGCCAAGATAATA 57.194 29.630 0.00 0.00 0.00 0.98
1707 1726 8.533657 TCAAGAAAATTCATGTGCCAAGATAAT 58.466 29.630 0.00 0.00 0.00 1.28
1708 1727 7.894708 TCAAGAAAATTCATGTGCCAAGATAA 58.105 30.769 0.00 0.00 0.00 1.75
1709 1728 7.465353 TCAAGAAAATTCATGTGCCAAGATA 57.535 32.000 0.00 0.00 0.00 1.98
1710 1729 6.349243 TCAAGAAAATTCATGTGCCAAGAT 57.651 33.333 0.00 0.00 0.00 2.40
1711 1730 5.787953 TCAAGAAAATTCATGTGCCAAGA 57.212 34.783 0.00 0.00 0.00 3.02
1712 1731 8.030692 TCTAATCAAGAAAATTCATGTGCCAAG 58.969 33.333 0.00 0.00 0.00 3.61
1713 1732 7.814107 GTCTAATCAAGAAAATTCATGTGCCAA 59.186 33.333 0.00 0.00 35.47 4.52
1714 1733 7.177216 AGTCTAATCAAGAAAATTCATGTGCCA 59.823 33.333 0.00 0.00 35.47 4.92
1715 1734 7.542025 AGTCTAATCAAGAAAATTCATGTGCC 58.458 34.615 0.00 0.00 35.47 5.01
1716 1735 8.976986 AAGTCTAATCAAGAAAATTCATGTGC 57.023 30.769 0.00 0.00 35.47 4.57
1743 1762 5.656859 GCTACCCCAACTCTATCCAATTTTT 59.343 40.000 0.00 0.00 0.00 1.94
1744 1763 5.201243 GCTACCCCAACTCTATCCAATTTT 58.799 41.667 0.00 0.00 0.00 1.82
1745 1764 4.229582 TGCTACCCCAACTCTATCCAATTT 59.770 41.667 0.00 0.00 0.00 1.82
1746 1765 3.785887 TGCTACCCCAACTCTATCCAATT 59.214 43.478 0.00 0.00 0.00 2.32
1747 1766 3.136626 GTGCTACCCCAACTCTATCCAAT 59.863 47.826 0.00 0.00 0.00 3.16
1748 1767 2.504175 GTGCTACCCCAACTCTATCCAA 59.496 50.000 0.00 0.00 0.00 3.53
1749 1768 2.116238 GTGCTACCCCAACTCTATCCA 58.884 52.381 0.00 0.00 0.00 3.41
1750 1769 1.416772 GGTGCTACCCCAACTCTATCC 59.583 57.143 0.00 0.00 30.04 2.59
1751 1770 2.116238 TGGTGCTACCCCAACTCTATC 58.884 52.381 3.33 0.00 37.50 2.08
1752 1771 2.263895 TGGTGCTACCCCAACTCTAT 57.736 50.000 3.33 0.00 37.50 1.98
1753 1772 2.032965 TTGGTGCTACCCCAACTCTA 57.967 50.000 3.33 0.00 37.50 2.43
1754 1773 1.372501 ATTGGTGCTACCCCAACTCT 58.627 50.000 0.00 0.00 44.36 3.24
1755 1774 1.818674 CAATTGGTGCTACCCCAACTC 59.181 52.381 0.00 0.00 44.36 3.01
1756 1775 1.427368 TCAATTGGTGCTACCCCAACT 59.573 47.619 5.42 0.00 44.36 3.16
1757 1776 1.917872 TCAATTGGTGCTACCCCAAC 58.082 50.000 5.42 0.00 44.36 3.77
1758 1777 2.042297 TCATCAATTGGTGCTACCCCAA 59.958 45.455 14.14 0.00 45.55 4.12
1759 1778 1.638070 TCATCAATTGGTGCTACCCCA 59.362 47.619 14.14 0.00 37.50 4.96
1760 1779 2.301346 CTCATCAATTGGTGCTACCCC 58.699 52.381 14.14 0.00 37.50 4.95
1761 1780 3.004752 ACTCATCAATTGGTGCTACCC 57.995 47.619 14.14 0.00 37.50 3.69
1762 1781 3.561725 GCTACTCATCAATTGGTGCTACC 59.438 47.826 14.14 0.00 39.22 3.18
1763 1782 4.446371 AGCTACTCATCAATTGGTGCTAC 58.554 43.478 14.14 1.88 0.00 3.58
1764 1783 4.760530 AGCTACTCATCAATTGGTGCTA 57.239 40.909 14.14 5.00 0.00 3.49
1765 1784 3.641434 AGCTACTCATCAATTGGTGCT 57.359 42.857 14.14 4.22 0.00 4.40
1766 1785 3.441572 ACAAGCTACTCATCAATTGGTGC 59.558 43.478 14.14 1.69 0.00 5.01
1767 1786 5.181811 TGAACAAGCTACTCATCAATTGGTG 59.818 40.000 12.75 12.75 0.00 4.17
1768 1787 5.316167 TGAACAAGCTACTCATCAATTGGT 58.684 37.500 5.42 0.00 0.00 3.67
1769 1788 5.885230 TGAACAAGCTACTCATCAATTGG 57.115 39.130 5.42 0.00 0.00 3.16
1770 1789 6.671190 TGTTGAACAAGCTACTCATCAATTG 58.329 36.000 0.00 0.00 0.00 2.32
1771 1790 6.882610 TGTTGAACAAGCTACTCATCAATT 57.117 33.333 0.00 0.00 0.00 2.32
1772 1791 7.040201 ACAATGTTGAACAAGCTACTCATCAAT 60.040 33.333 0.62 0.00 0.00 2.57
1773 1792 6.262944 ACAATGTTGAACAAGCTACTCATCAA 59.737 34.615 0.62 0.00 0.00 2.57
1774 1793 5.764686 ACAATGTTGAACAAGCTACTCATCA 59.235 36.000 0.62 0.00 0.00 3.07
1775 1794 6.148480 AGACAATGTTGAACAAGCTACTCATC 59.852 38.462 0.62 0.00 0.00 2.92
1776 1795 6.000219 AGACAATGTTGAACAAGCTACTCAT 59.000 36.000 0.62 0.00 0.00 2.90
1777 1796 5.237127 CAGACAATGTTGAACAAGCTACTCA 59.763 40.000 0.62 0.00 0.00 3.41
1778 1797 5.466728 TCAGACAATGTTGAACAAGCTACTC 59.533 40.000 0.62 0.00 0.00 2.59
1779 1798 5.368145 TCAGACAATGTTGAACAAGCTACT 58.632 37.500 0.62 0.00 0.00 2.57
1780 1799 5.466728 TCTCAGACAATGTTGAACAAGCTAC 59.533 40.000 0.62 0.00 0.00 3.58
1781 1800 5.610398 TCTCAGACAATGTTGAACAAGCTA 58.390 37.500 0.62 0.00 0.00 3.32
1782 1801 4.454678 TCTCAGACAATGTTGAACAAGCT 58.545 39.130 0.62 0.00 0.00 3.74
1783 1802 4.818534 TCTCAGACAATGTTGAACAAGC 57.181 40.909 0.62 0.00 0.00 4.01
1784 1803 5.240183 ACCATCTCAGACAATGTTGAACAAG 59.760 40.000 0.62 0.52 0.00 3.16
1785 1804 5.132502 ACCATCTCAGACAATGTTGAACAA 58.867 37.500 0.62 0.00 0.00 2.83
1786 1805 4.717877 ACCATCTCAGACAATGTTGAACA 58.282 39.130 0.00 0.00 0.00 3.18
1787 1806 5.695851 AACCATCTCAGACAATGTTGAAC 57.304 39.130 0.00 0.00 0.00 3.18
1788 1807 5.009911 CCAAACCATCTCAGACAATGTTGAA 59.990 40.000 0.00 0.00 0.00 2.69
1789 1808 4.520111 CCAAACCATCTCAGACAATGTTGA 59.480 41.667 0.00 0.00 0.00 3.18
1790 1809 4.321452 CCCAAACCATCTCAGACAATGTTG 60.321 45.833 0.00 0.00 0.00 3.33
1791 1810 3.828451 CCCAAACCATCTCAGACAATGTT 59.172 43.478 0.00 0.00 0.00 2.71
1792 1811 3.424703 CCCAAACCATCTCAGACAATGT 58.575 45.455 0.00 0.00 0.00 2.71
1793 1812 2.165030 GCCCAAACCATCTCAGACAATG 59.835 50.000 0.00 0.00 0.00 2.82
1794 1813 2.225091 TGCCCAAACCATCTCAGACAAT 60.225 45.455 0.00 0.00 0.00 2.71
1795 1814 1.144708 TGCCCAAACCATCTCAGACAA 59.855 47.619 0.00 0.00 0.00 3.18
1796 1815 0.770499 TGCCCAAACCATCTCAGACA 59.230 50.000 0.00 0.00 0.00 3.41
1797 1816 2.134789 ATGCCCAAACCATCTCAGAC 57.865 50.000 0.00 0.00 0.00 3.51
1798 1817 4.079844 TGAATATGCCCAAACCATCTCAGA 60.080 41.667 0.00 0.00 0.00 3.27
1799 1818 4.209538 TGAATATGCCCAAACCATCTCAG 58.790 43.478 0.00 0.00 0.00 3.35
1800 1819 4.209538 CTGAATATGCCCAAACCATCTCA 58.790 43.478 0.00 0.00 0.00 3.27
1801 1820 3.005155 GCTGAATATGCCCAAACCATCTC 59.995 47.826 0.00 0.00 0.00 2.75
1802 1821 2.961062 GCTGAATATGCCCAAACCATCT 59.039 45.455 0.00 0.00 0.00 2.90
1803 1822 2.287788 CGCTGAATATGCCCAAACCATC 60.288 50.000 0.00 0.00 0.00 3.51
1804 1823 1.682854 CGCTGAATATGCCCAAACCAT 59.317 47.619 0.00 0.00 0.00 3.55
1805 1824 1.102154 CGCTGAATATGCCCAAACCA 58.898 50.000 0.00 0.00 0.00 3.67
1806 1825 0.249031 GCGCTGAATATGCCCAAACC 60.249 55.000 0.00 0.00 0.00 3.27
1807 1826 0.455410 TGCGCTGAATATGCCCAAAC 59.545 50.000 9.73 0.00 0.00 2.93
1808 1827 0.740149 CTGCGCTGAATATGCCCAAA 59.260 50.000 9.73 0.00 0.00 3.28
1809 1828 1.102809 CCTGCGCTGAATATGCCCAA 61.103 55.000 16.65 0.00 0.00 4.12
1810 1829 1.526686 CCTGCGCTGAATATGCCCA 60.527 57.895 16.65 0.00 0.00 5.36
1811 1830 2.912624 GCCTGCGCTGAATATGCCC 61.913 63.158 16.65 0.00 0.00 5.36
1812 1831 2.641559 GCCTGCGCTGAATATGCC 59.358 61.111 16.65 0.00 0.00 4.40
1813 1832 1.849976 GAGGCCTGCGCTGAATATGC 61.850 60.000 12.00 9.73 34.44 3.14
1814 1833 1.233285 GGAGGCCTGCGCTGAATATG 61.233 60.000 12.00 0.00 34.44 1.78
1815 1834 1.072159 GGAGGCCTGCGCTGAATAT 59.928 57.895 12.00 0.00 34.44 1.28
1816 1835 2.315781 CTGGAGGCCTGCGCTGAATA 62.316 60.000 20.39 0.00 34.44 1.75
1817 1836 3.694058 CTGGAGGCCTGCGCTGAAT 62.694 63.158 20.39 0.55 34.44 2.57
1818 1837 4.399395 CTGGAGGCCTGCGCTGAA 62.399 66.667 20.39 0.00 34.44 3.02
1820 1839 4.399395 TTCTGGAGGCCTGCGCTG 62.399 66.667 20.39 12.20 34.44 5.18
1821 1840 4.093291 CTTCTGGAGGCCTGCGCT 62.093 66.667 20.39 0.00 34.44 5.92
1823 1842 4.093291 AGCTTCTGGAGGCCTGCG 62.093 66.667 20.39 14.23 33.44 5.18
1824 1843 2.124778 GAGCTTCTGGAGGCCTGC 60.125 66.667 18.95 18.95 33.44 4.85
1825 1844 2.254737 CTGGAGCTTCTGGAGGCCTG 62.255 65.000 12.00 0.00 33.44 4.85
1826 1845 1.994507 CTGGAGCTTCTGGAGGCCT 60.995 63.158 3.86 3.86 33.44 5.19
1827 1846 2.297129 ACTGGAGCTTCTGGAGGCC 61.297 63.158 3.68 0.00 33.44 5.19
1828 1847 1.078567 CACTGGAGCTTCTGGAGGC 60.079 63.158 3.68 0.00 0.00 4.70
1829 1848 1.078567 GCACTGGAGCTTCTGGAGG 60.079 63.158 3.68 0.00 0.00 4.30
1830 1849 0.252479 ATGCACTGGAGCTTCTGGAG 59.748 55.000 3.68 0.00 34.99 3.86
1831 1850 1.483827 CTATGCACTGGAGCTTCTGGA 59.516 52.381 3.68 0.00 34.99 3.86
1832 1851 1.950828 CTATGCACTGGAGCTTCTGG 58.049 55.000 3.68 0.00 34.99 3.86
1833 1852 1.297664 GCTATGCACTGGAGCTTCTG 58.702 55.000 0.00 0.00 33.28 3.02
1834 1853 0.179089 CGCTATGCACTGGAGCTTCT 60.179 55.000 9.31 0.00 33.91 2.85
1835 1854 1.156645 CCGCTATGCACTGGAGCTTC 61.157 60.000 9.31 0.00 33.91 3.86
1836 1855 1.153289 CCGCTATGCACTGGAGCTT 60.153 57.895 9.31 0.00 33.91 3.74
1837 1856 2.060383 TCCGCTATGCACTGGAGCT 61.060 57.895 9.31 0.00 33.91 4.09
1838 1857 1.884926 GTCCGCTATGCACTGGAGC 60.885 63.158 0.00 0.00 0.00 4.70
1839 1858 1.589993 CGTCCGCTATGCACTGGAG 60.590 63.158 0.00 0.00 0.00 3.86
1840 1859 2.494445 CGTCCGCTATGCACTGGA 59.506 61.111 0.00 0.00 0.00 3.86
1841 1860 2.586079 CCGTCCGCTATGCACTGG 60.586 66.667 0.00 0.00 0.00 4.00
1842 1861 3.264897 GCCGTCCGCTATGCACTG 61.265 66.667 0.00 0.00 0.00 3.66
2147 2166 4.789012 AGCAGTTACCAATCAACCAATG 57.211 40.909 0.00 0.00 0.00 2.82
2148 2167 4.832266 TCAAGCAGTTACCAATCAACCAAT 59.168 37.500 0.00 0.00 0.00 3.16
2149 2168 4.211125 TCAAGCAGTTACCAATCAACCAA 58.789 39.130 0.00 0.00 0.00 3.67
2150 2169 3.826524 TCAAGCAGTTACCAATCAACCA 58.173 40.909 0.00 0.00 0.00 3.67
2151 2170 5.048083 TCAATCAAGCAGTTACCAATCAACC 60.048 40.000 0.00 0.00 0.00 3.77
2152 2171 6.012658 TCAATCAAGCAGTTACCAATCAAC 57.987 37.500 0.00 0.00 0.00 3.18
2153 2172 5.335897 GCTCAATCAAGCAGTTACCAATCAA 60.336 40.000 0.00 0.00 42.05 2.57
2154 2173 4.156556 GCTCAATCAAGCAGTTACCAATCA 59.843 41.667 0.00 0.00 42.05 2.57
2155 2174 4.439289 GGCTCAATCAAGCAGTTACCAATC 60.439 45.833 0.00 0.00 44.35 2.67
2156 2175 3.445096 GGCTCAATCAAGCAGTTACCAAT 59.555 43.478 0.00 0.00 44.35 3.16
2157 2176 2.819608 GGCTCAATCAAGCAGTTACCAA 59.180 45.455 0.00 0.00 44.35 3.67
2158 2177 2.436417 GGCTCAATCAAGCAGTTACCA 58.564 47.619 0.00 0.00 44.35 3.25
2159 2178 1.745653 GGGCTCAATCAAGCAGTTACC 59.254 52.381 0.00 0.00 44.35 2.85
2160 2179 2.436417 TGGGCTCAATCAAGCAGTTAC 58.564 47.619 0.00 0.00 44.35 2.50
2161 2180 2.877097 TGGGCTCAATCAAGCAGTTA 57.123 45.000 0.00 0.00 44.35 2.24
2162 2181 1.999648 TTGGGCTCAATCAAGCAGTT 58.000 45.000 0.00 0.00 44.35 3.16
2163 2182 1.615392 GTTTGGGCTCAATCAAGCAGT 59.385 47.619 0.00 0.00 44.35 4.40
2164 2183 1.614903 TGTTTGGGCTCAATCAAGCAG 59.385 47.619 7.63 0.00 44.35 4.24
2165 2184 1.702182 TGTTTGGGCTCAATCAAGCA 58.298 45.000 7.63 0.00 44.35 3.91
2166 2185 2.613691 CATGTTTGGGCTCAATCAAGC 58.386 47.619 13.86 0.00 41.73 4.01
2167 2186 3.241067 CCATGTTTGGGCTCAATCAAG 57.759 47.619 13.86 9.60 39.56 3.02
2177 2196 1.836158 TGGTGGTGCCATGTTTGGG 60.836 57.895 0.00 0.00 43.61 4.12
2178 2197 3.868009 TGGTGGTGCCATGTTTGG 58.132 55.556 0.00 0.00 43.61 3.28
2185 2204 1.040339 GTTCTTTGGTGGTGGTGCCA 61.040 55.000 0.00 0.00 46.95 4.92
2186 2205 1.040339 TGTTCTTTGGTGGTGGTGCC 61.040 55.000 0.00 0.00 37.90 5.01
2187 2206 0.102300 GTGTTCTTTGGTGGTGGTGC 59.898 55.000 0.00 0.00 0.00 5.01
2188 2207 1.405105 CAGTGTTCTTTGGTGGTGGTG 59.595 52.381 0.00 0.00 0.00 4.17
2189 2208 1.005450 ACAGTGTTCTTTGGTGGTGGT 59.995 47.619 0.00 0.00 0.00 4.16
2190 2209 1.676006 GACAGTGTTCTTTGGTGGTGG 59.324 52.381 0.00 0.00 0.00 4.61
2191 2210 2.364632 TGACAGTGTTCTTTGGTGGTG 58.635 47.619 0.00 0.00 0.00 4.17
2192 2211 2.799126 TGACAGTGTTCTTTGGTGGT 57.201 45.000 0.00 0.00 0.00 4.16
2193 2212 3.796504 GCAATGACAGTGTTCTTTGGTGG 60.797 47.826 4.63 0.00 33.37 4.61
2194 2213 3.067180 AGCAATGACAGTGTTCTTTGGTG 59.933 43.478 17.12 5.19 38.93 4.17
2195 2214 3.290710 AGCAATGACAGTGTTCTTTGGT 58.709 40.909 4.63 8.35 36.86 3.67
2196 2215 3.996150 AGCAATGACAGTGTTCTTTGG 57.004 42.857 4.63 0.00 33.37 3.28
2197 2216 4.923893 TCAAGCAATGACAGTGTTCTTTG 58.076 39.130 4.63 7.02 35.01 2.77
2198 2217 5.581126 TTCAAGCAATGACAGTGTTCTTT 57.419 34.783 4.63 0.00 37.92 2.52
2319 2338 0.770499 TGCCCAAACCATCTCAGACA 59.230 50.000 0.00 0.00 0.00 3.41
2360 2379 2.060383 TCCGCTATGCACTGGAGCT 61.060 57.895 9.31 0.00 33.91 4.09
2361 2380 1.884926 GTCCGCTATGCACTGGAGC 60.885 63.158 0.00 0.00 0.00 4.70
2362 2381 1.589993 CGTCCGCTATGCACTGGAG 60.590 63.158 0.00 0.00 0.00 3.86
2363 2382 2.494445 CGTCCGCTATGCACTGGA 59.506 61.111 0.00 0.00 0.00 3.86
2364 2383 2.586079 CCGTCCGCTATGCACTGG 60.586 66.667 0.00 0.00 0.00 4.00
2365 2384 3.264897 GCCGTCCGCTATGCACTG 61.265 66.667 0.00 0.00 0.00 3.66
2374 2393 1.352156 CTCACACTTTAGCCGTCCGC 61.352 60.000 0.00 0.00 37.98 5.54
2375 2394 0.242825 TCTCACACTTTAGCCGTCCG 59.757 55.000 0.00 0.00 0.00 4.79
2376 2395 2.271800 CATCTCACACTTTAGCCGTCC 58.728 52.381 0.00 0.00 0.00 4.79
2377 2396 2.271800 CCATCTCACACTTTAGCCGTC 58.728 52.381 0.00 0.00 0.00 4.79
2378 2397 1.623811 ACCATCTCACACTTTAGCCGT 59.376 47.619 0.00 0.00 0.00 5.68
2379 2398 2.386661 ACCATCTCACACTTTAGCCG 57.613 50.000 0.00 0.00 0.00 5.52
2380 2399 3.191371 CCAAACCATCTCACACTTTAGCC 59.809 47.826 0.00 0.00 0.00 3.93
2381 2400 3.191371 CCCAAACCATCTCACACTTTAGC 59.809 47.826 0.00 0.00 0.00 3.09
2382 2401 3.191371 GCCCAAACCATCTCACACTTTAG 59.809 47.826 0.00 0.00 0.00 1.85
2383 2402 3.153919 GCCCAAACCATCTCACACTTTA 58.846 45.455 0.00 0.00 0.00 1.85
2384 2403 1.963515 GCCCAAACCATCTCACACTTT 59.036 47.619 0.00 0.00 0.00 2.66
2385 2404 1.133513 TGCCCAAACCATCTCACACTT 60.134 47.619 0.00 0.00 0.00 3.16
2386 2405 0.478072 TGCCCAAACCATCTCACACT 59.522 50.000 0.00 0.00 0.00 3.55
2387 2406 1.549203 ATGCCCAAACCATCTCACAC 58.451 50.000 0.00 0.00 0.00 3.82
2388 2407 3.668141 ATATGCCCAAACCATCTCACA 57.332 42.857 0.00 0.00 0.00 3.58
2389 2408 3.953612 TGAATATGCCCAAACCATCTCAC 59.046 43.478 0.00 0.00 0.00 3.51
2390 2409 4.209538 CTGAATATGCCCAAACCATCTCA 58.790 43.478 0.00 0.00 0.00 3.27
2391 2410 3.005155 GCTGAATATGCCCAAACCATCTC 59.995 47.826 0.00 0.00 0.00 2.75
2392 2411 2.961062 GCTGAATATGCCCAAACCATCT 59.039 45.455 0.00 0.00 0.00 2.90
2393 2412 2.287788 CGCTGAATATGCCCAAACCATC 60.288 50.000 0.00 0.00 0.00 3.51
2394 2413 1.682854 CGCTGAATATGCCCAAACCAT 59.317 47.619 0.00 0.00 0.00 3.55
2395 2414 1.102154 CGCTGAATATGCCCAAACCA 58.898 50.000 0.00 0.00 0.00 3.67
2396 2415 0.249031 GCGCTGAATATGCCCAAACC 60.249 55.000 0.00 0.00 0.00 3.27
2397 2416 0.455410 TGCGCTGAATATGCCCAAAC 59.545 50.000 9.73 0.00 0.00 2.93
2398 2417 0.740149 CTGCGCTGAATATGCCCAAA 59.260 50.000 9.73 0.00 0.00 3.28
2399 2418 1.102809 CCTGCGCTGAATATGCCCAA 61.103 55.000 16.65 0.00 0.00 4.12
2400 2419 1.526686 CCTGCGCTGAATATGCCCA 60.527 57.895 16.65 0.00 0.00 5.36
2401 2420 2.912624 GCCTGCGCTGAATATGCCC 61.913 63.158 16.65 0.00 0.00 5.36
2402 2421 2.641559 GCCTGCGCTGAATATGCC 59.358 61.111 16.65 0.00 0.00 4.40
2403 2422 1.849976 GAGGCCTGCGCTGAATATGC 61.850 60.000 12.00 9.73 34.44 3.14
2404 2423 1.233285 GGAGGCCTGCGCTGAATATG 61.233 60.000 12.00 0.00 34.44 1.78
2405 2424 1.072159 GGAGGCCTGCGCTGAATAT 59.928 57.895 12.00 0.00 34.44 1.28
2406 2425 2.315781 CTGGAGGCCTGCGCTGAATA 62.316 60.000 20.39 0.00 34.44 1.75
2407 2426 3.694058 CTGGAGGCCTGCGCTGAAT 62.694 63.158 20.39 0.55 34.44 2.57
2408 2427 4.399395 CTGGAGGCCTGCGCTGAA 62.399 66.667 20.39 0.00 34.44 3.02
2410 2429 4.399395 TTCTGGAGGCCTGCGCTG 62.399 66.667 20.39 12.20 34.44 5.18
2411 2430 4.093291 CTTCTGGAGGCCTGCGCT 62.093 66.667 20.39 0.00 34.44 5.92
2413 2432 4.093291 AGCTTCTGGAGGCCTGCG 62.093 66.667 20.39 14.23 33.44 5.18
2414 2433 2.124778 GAGCTTCTGGAGGCCTGC 60.125 66.667 18.95 18.95 33.44 4.85
2415 2434 2.254737 CTGGAGCTTCTGGAGGCCTG 62.255 65.000 12.00 0.00 33.44 4.85
2416 2435 1.994507 CTGGAGCTTCTGGAGGCCT 60.995 63.158 3.86 3.86 33.44 5.19
2417 2436 2.297129 ACTGGAGCTTCTGGAGGCC 61.297 63.158 3.68 0.00 33.44 5.19
2418 2437 1.078567 CACTGGAGCTTCTGGAGGC 60.079 63.158 3.68 0.00 0.00 4.70
2419 2438 1.078567 GCACTGGAGCTTCTGGAGG 60.079 63.158 3.68 0.00 0.00 4.30
2420 2439 0.252479 ATGCACTGGAGCTTCTGGAG 59.748 55.000 3.68 0.00 34.99 3.86
2421 2440 1.483827 CTATGCACTGGAGCTTCTGGA 59.516 52.381 3.68 0.00 34.99 3.86
2422 2441 1.950828 CTATGCACTGGAGCTTCTGG 58.049 55.000 3.68 0.00 34.99 3.86
2423 2442 1.297664 GCTATGCACTGGAGCTTCTG 58.702 55.000 0.00 0.00 33.28 3.02
2424 2443 0.179089 CGCTATGCACTGGAGCTTCT 60.179 55.000 9.31 0.00 33.91 2.85
2425 2444 1.156645 CCGCTATGCACTGGAGCTTC 61.157 60.000 9.31 0.00 33.91 3.86
2426 2445 1.153289 CCGCTATGCACTGGAGCTT 60.153 57.895 9.31 0.00 33.91 3.74
2427 2446 2.060383 TCCGCTATGCACTGGAGCT 61.060 57.895 9.31 0.00 33.91 4.09
2628 2647 0.834261 CCCCACCGGGTTGGATTTTT 60.834 55.000 18.49 0.00 45.50 1.94
3123 3605 7.240167 AGACTAACCCTGAACTAACTCTAACT 58.760 38.462 0.00 0.00 0.00 2.24
3363 3845 5.649602 ACAACAACAACAACAACAACAAG 57.350 34.783 0.00 0.00 0.00 3.16
3364 3846 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3365 3847 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3734 4216 8.025445 CCTGATAAAGAAATGAACAAGGACAAG 58.975 37.037 0.00 0.00 0.00 3.16
4276 4758 2.553602 CACCAGTGAGCAATAAAGCACA 59.446 45.455 0.00 0.00 36.85 4.57
4306 4788 5.520376 AGTGCTGCAAACTTTAAGAATGT 57.480 34.783 2.77 0.00 0.00 2.71
4516 4998 7.122650 TCCCAGTCTTGAAAATTAATGGATGAC 59.877 37.037 0.00 0.00 30.99 3.06
4530 5012 6.542821 AGTTTCAATATGTCCCAGTCTTGAA 58.457 36.000 0.00 0.00 32.49 2.69
4647 5129 0.858583 GCCCGTCAAATGTGCAAAAC 59.141 50.000 0.00 0.00 0.00 2.43
4668 5150 9.522804 GTTCCAGATAGTTACTAGAATGACAAG 57.477 37.037 0.00 0.00 0.00 3.16
4755 5237 6.479972 TTAATGATCCCACTGTCTTCGTAT 57.520 37.500 0.00 0.00 0.00 3.06
5181 5666 7.178451 ACATAATAGGCAAAGCTTACAAAAGGT 59.822 33.333 0.00 0.00 45.22 3.50
5206 5691 0.663153 AACAAGCTGGACGAAAGCAC 59.337 50.000 0.00 0.00 43.37 4.40
5310 5795 4.038642 ACGGACACATTGGTTGCTTTATTT 59.961 37.500 0.00 0.00 0.00 1.40
5325 5810 3.248495 TGAACTTGTTGTACGGACACA 57.752 42.857 0.00 0.00 34.48 3.72
5525 6010 4.082733 GGAGCAGGTTTTGTAAGATTCCAC 60.083 45.833 0.00 0.00 0.00 4.02
5528 6013 5.904362 ATGGAGCAGGTTTTGTAAGATTC 57.096 39.130 0.00 0.00 0.00 2.52
5535 6020 3.009723 CGACATATGGAGCAGGTTTTGT 58.990 45.455 7.80 0.00 0.00 2.83
5547 6032 6.204108 GGGAAATTGTACCTAACGACATATGG 59.796 42.308 7.80 0.00 0.00 2.74
5551 6036 5.431179 AGGGAAATTGTACCTAACGACAT 57.569 39.130 0.00 0.00 31.53 3.06
5556 6041 8.635328 TCAAGAAAAAGGGAAATTGTACCTAAC 58.365 33.333 0.00 0.00 33.37 2.34
5570 6055 3.119708 CGATTCCTGCTCAAGAAAAAGGG 60.120 47.826 0.00 0.00 0.00 3.95
5571 6056 3.671702 GCGATTCCTGCTCAAGAAAAAGG 60.672 47.826 0.00 0.00 0.00 3.11
5572 6057 3.190118 AGCGATTCCTGCTCAAGAAAAAG 59.810 43.478 0.00 0.00 38.62 2.27
5573 6058 3.058016 CAGCGATTCCTGCTCAAGAAAAA 60.058 43.478 0.00 0.00 41.72 1.94
5577 6062 0.610174 ACAGCGATTCCTGCTCAAGA 59.390 50.000 0.00 0.00 41.72 3.02
5578 6063 0.725686 CACAGCGATTCCTGCTCAAG 59.274 55.000 0.00 0.00 41.72 3.02
5579 6064 0.321346 TCACAGCGATTCCTGCTCAA 59.679 50.000 0.00 0.00 41.72 3.02
5581 6066 1.661341 AATCACAGCGATTCCTGCTC 58.339 50.000 0.00 0.00 40.48 4.26
5582 6067 2.119801 AAATCACAGCGATTCCTGCT 57.880 45.000 0.00 0.00 43.83 4.24
5583 6068 4.558538 AATAAATCACAGCGATTCCTGC 57.441 40.909 0.00 0.00 43.83 4.85
5584 6069 6.038161 TGGTTAATAAATCACAGCGATTCCTG 59.962 38.462 0.00 1.90 43.83 3.86
5585 6070 6.119536 TGGTTAATAAATCACAGCGATTCCT 58.880 36.000 0.00 0.00 43.83 3.36
5586 6071 6.038271 ACTGGTTAATAAATCACAGCGATTCC 59.962 38.462 0.00 0.00 43.83 3.01
5587 6072 7.011482 AGACTGGTTAATAAATCACAGCGATTC 59.989 37.037 0.00 0.00 43.83 2.52
5617 6102 5.867174 CGTGTATTATCACACTCAGAACCAA 59.133 40.000 5.00 0.00 45.40 3.67
5620 6105 5.004821 CAGCGTGTATTATCACACTCAGAAC 59.995 44.000 5.00 0.00 45.40 3.01
5624 6109 3.780902 CCAGCGTGTATTATCACACTCA 58.219 45.455 5.00 0.00 45.40 3.41
5625 6110 2.540101 GCCAGCGTGTATTATCACACTC 59.460 50.000 5.00 0.00 45.40 3.51
5628 6120 2.682155 TGCCAGCGTGTATTATCACA 57.318 45.000 0.00 0.00 38.12 3.58
5636 6128 0.673333 CCATGTCTTGCCAGCGTGTA 60.673 55.000 0.00 0.00 0.00 2.90
5643 6135 1.548081 CATGGTTCCATGTCTTGCCA 58.452 50.000 20.05 0.00 39.02 4.92
5654 6146 8.088365 AGAATAAGCTTTGTAAAACATGGTTCC 58.912 33.333 3.20 0.00 30.05 3.62
5680 6172 8.184304 AGTTGCCCATGTTTTAGTTGTAATAA 57.816 30.769 0.00 0.00 0.00 1.40
5681 6173 7.768807 AGTTGCCCATGTTTTAGTTGTAATA 57.231 32.000 0.00 0.00 0.00 0.98
5683 6175 6.472686 AAGTTGCCCATGTTTTAGTTGTAA 57.527 33.333 0.00 0.00 0.00 2.41
5684 6176 6.472686 AAAGTTGCCCATGTTTTAGTTGTA 57.527 33.333 0.00 0.00 0.00 2.41
5685 6177 5.351948 AAAGTTGCCCATGTTTTAGTTGT 57.648 34.783 0.00 0.00 0.00 3.32
5687 6179 7.962441 AGAATAAAGTTGCCCATGTTTTAGTT 58.038 30.769 0.00 0.00 0.00 2.24
5688 6180 7.539034 AGAATAAAGTTGCCCATGTTTTAGT 57.461 32.000 0.00 0.00 0.00 2.24
5689 6181 8.087750 TCAAGAATAAAGTTGCCCATGTTTTAG 58.912 33.333 0.00 0.00 0.00 1.85
5690 6182 7.957002 TCAAGAATAAAGTTGCCCATGTTTTA 58.043 30.769 0.00 0.00 0.00 1.52
5708 6207 0.250124 TGGGTGCGTCGTTCAAGAAT 60.250 50.000 0.00 0.00 0.00 2.40
5712 6211 2.970324 GCTGGGTGCGTCGTTCAA 60.970 61.111 0.00 0.00 0.00 2.69
5728 6227 0.534203 TCGTGGAGTCCAAGGTTTGC 60.534 55.000 22.82 4.57 34.18 3.68
5744 6243 7.745620 ATGACAAAGAAATTTAGGACTTCGT 57.254 32.000 0.00 0.00 0.00 3.85
5754 6253 7.151999 TGGTGCGTATATGACAAAGAAATTT 57.848 32.000 0.00 0.00 0.00 1.82
5757 6256 6.751514 AATGGTGCGTATATGACAAAGAAA 57.248 33.333 0.00 0.00 0.00 2.52
5758 6257 6.597672 AGAAATGGTGCGTATATGACAAAGAA 59.402 34.615 0.00 0.00 0.00 2.52
5759 6258 6.112734 AGAAATGGTGCGTATATGACAAAGA 58.887 36.000 0.00 0.00 0.00 2.52
5760 6259 6.363577 AGAAATGGTGCGTATATGACAAAG 57.636 37.500 0.00 0.00 0.00 2.77
5763 6262 9.719355 AATATAAGAAATGGTGCGTATATGACA 57.281 29.630 0.00 0.00 0.00 3.58
5767 6266 9.944376 ACTGAATATAAGAAATGGTGCGTATAT 57.056 29.630 0.00 0.00 0.00 0.86
5769 6268 8.677148 AACTGAATATAAGAAATGGTGCGTAT 57.323 30.769 0.00 0.00 0.00 3.06
5803 6304 6.128499 GCAACAATGTAACATTAGTACCGACA 60.128 38.462 0.00 0.00 0.00 4.35
5807 6308 8.040716 AGAAGCAACAATGTAACATTAGTACC 57.959 34.615 0.00 0.00 0.00 3.34
5808 6309 8.717821 TGAGAAGCAACAATGTAACATTAGTAC 58.282 33.333 0.00 0.00 0.00 2.73
5811 6312 7.810658 ACTGAGAAGCAACAATGTAACATTAG 58.189 34.615 0.00 0.00 0.00 1.73
5817 6318 6.691754 TTCAACTGAGAAGCAACAATGTAA 57.308 33.333 0.00 0.00 0.00 2.41
5834 6339 5.290885 GCTTTTGAACGACCAAAATTCAACT 59.709 36.000 15.76 0.00 42.81 3.16
5879 6384 6.547141 TCAAACACTCCATGAAGTCTTCAATT 59.453 34.615 18.93 1.02 43.95 2.32
5888 6393 5.954296 ACTGAATCAAACACTCCATGAAG 57.046 39.130 0.00 0.00 0.00 3.02
5890 6395 6.713762 AAAACTGAATCAAACACTCCATGA 57.286 33.333 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.