Multiple sequence alignment - TraesCS5B01G146300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G146300 chr5B 100.000 6362 0 0 1 6362 274347077 274353438 0.000000e+00 11749.0
1 TraesCS5B01G146300 chr5B 98.461 3118 33 4 2765 5878 274461554 274464660 0.000000e+00 5478.0
2 TraesCS5B01G146300 chr5B 98.169 2840 25 7 1 2835 274458217 274461034 0.000000e+00 4931.0
3 TraesCS5B01G146300 chr5B 94.523 493 18 5 5875 6362 274470186 274470674 0.000000e+00 752.0
4 TraesCS5B01G146300 chr5B 81.433 614 102 12 4 610 623745828 623745220 5.730000e-135 492.0
5 TraesCS5B01G146300 chr5B 81.270 614 103 12 4 610 627327868 627327260 2.670000e-133 486.0
6 TraesCS5B01G146300 chr5B 99.184 245 2 0 2592 2836 274461314 274461558 5.850000e-120 442.0
7 TraesCS5B01G146300 chr5B 80.479 584 103 10 1 580 58385819 58386395 2.720000e-118 436.0
8 TraesCS5B01G146300 chr5B 78.035 733 109 39 1 710 36373673 36374376 1.280000e-111 414.0
9 TraesCS5B01G146300 chr5B 80.172 580 87 20 1 576 36372774 36373329 5.940000e-110 409.0
10 TraesCS5B01G146300 chr5B 80.034 581 87 21 1 576 36374553 36375109 2.760000e-108 403.0
11 TraesCS5B01G146300 chr5B 79.381 582 88 24 1 576 36371877 36372432 1.290000e-101 381.0
12 TraesCS5B01G146300 chr5B 98.148 54 0 1 5503 5555 274352526 274352579 6.790000e-15 93.5
13 TraesCS5B01G146300 chr5B 98.148 54 0 1 5450 5503 274352579 274352631 6.790000e-15 93.5
14 TraesCS5B01G146300 chr5B 98.148 54 0 1 5503 5555 274464232 274464285 6.790000e-15 93.5
15 TraesCS5B01G146300 chr5B 96.296 54 1 1 5450 5503 274464285 274464337 3.160000e-13 87.9
16 TraesCS5B01G146300 chr5A 92.808 723 24 11 2892 3587 382106511 382107232 0.000000e+00 1022.0
17 TraesCS5B01G146300 chr5A 92.414 725 25 14 2891 3587 444900331 444899609 0.000000e+00 1007.0
18 TraesCS5B01G146300 chr5A 78.683 577 68 27 1 571 29968170 29968697 3.680000e-87 333.0
19 TraesCS5B01G146300 chr5A 77.224 281 46 16 355 629 51802211 51802479 1.430000e-31 148.0
20 TraesCS5B01G146300 chr2D 91.257 732 27 19 2892 3587 561051789 561051059 0.000000e+00 963.0
21 TraesCS5B01G146300 chr2D 90.996 733 30 7 2891 3587 537418338 537419070 0.000000e+00 955.0
22 TraesCS5B01G146300 chr2D 95.954 173 7 0 2719 2891 392545335 392545163 1.350000e-71 281.0
23 TraesCS5B01G146300 chr2D 95.954 173 7 0 2719 2891 594144229 594144057 1.350000e-71 281.0
24 TraesCS5B01G146300 chr2D 88.060 67 6 2 324 389 634702464 634702529 1.900000e-10 78.7
25 TraesCS5B01G146300 chr1B 90.041 733 37 9 2891 3587 662721747 662721015 0.000000e+00 917.0
26 TraesCS5B01G146300 chr1B 90.159 315 29 2 6050 6362 678292828 678293142 5.940000e-110 409.0
27 TraesCS5B01G146300 chr1B 97.283 184 5 0 3587 3770 605915024 605914841 4.790000e-81 313.0
28 TraesCS5B01G146300 chr1B 96.739 184 6 0 3587 3770 98964558 98964741 2.230000e-79 307.0
29 TraesCS5B01G146300 chr1B 76.580 538 78 33 324 823 629266649 629267176 1.060000e-62 252.0
30 TraesCS5B01G146300 chr1B 80.531 226 31 10 315 534 615210272 615210490 1.840000e-35 161.0
31 TraesCS5B01G146300 chr7A 89.344 732 41 19 2891 3587 162406390 162407119 0.000000e+00 885.0
32 TraesCS5B01G146300 chr7A 74.710 862 150 39 1 831 683632655 683631831 7.960000e-84 322.0
33 TraesCS5B01G146300 chr7A 74.197 841 132 45 1 809 129300509 129301296 8.130000e-69 272.0
34 TraesCS5B01G146300 chr7A 85.393 89 11 2 1 88 139137869 139137782 2.440000e-14 91.6
35 TraesCS5B01G146300 chr7D 96.977 397 11 1 3192 3587 592818044 592818440 0.000000e+00 665.0
36 TraesCS5B01G146300 chr7D 91.667 300 16 6 2883 3176 592817284 592817580 2.140000e-109 407.0
37 TraesCS5B01G146300 chr7D 95.263 190 9 0 3587 3776 474076668 474076857 1.040000e-77 302.0
38 TraesCS5B01G146300 chr7D 80.252 238 37 9 346 580 546122333 546122103 3.050000e-38 171.0
39 TraesCS5B01G146300 chr5D 82.149 605 82 16 1 600 41669781 41670364 4.430000e-136 496.0
40 TraesCS5B01G146300 chr5D 98.913 184 2 0 3587 3770 67584586 67584769 4.760000e-86 329.0
41 TraesCS5B01G146300 chr2B 90.566 318 28 2 6046 6362 151499087 151498771 2.740000e-113 420.0
42 TraesCS5B01G146300 chr2B 90.476 315 28 2 6050 6362 717480359 717480045 1.280000e-111 414.0
43 TraesCS5B01G146300 chr2B 80.882 272 37 12 315 580 546316862 546317124 3.890000e-47 200.0
44 TraesCS5B01G146300 chr3A 90.093 323 28 4 6043 6362 699836036 699836357 3.550000e-112 416.0
45 TraesCS5B01G146300 chr3A 90.159 315 29 2 6050 6362 662831971 662832285 5.940000e-110 409.0
46 TraesCS5B01G146300 chr3A 91.892 37 3 0 1796 1832 465019971 465020007 1.200000e-02 52.8
47 TraesCS5B01G146300 chr7B 90.282 319 28 3 6047 6362 876366 876684 1.280000e-111 414.0
48 TraesCS5B01G146300 chr4B 90.476 315 28 2 6050 6362 468236892 468237206 1.280000e-111 414.0
49 TraesCS5B01G146300 chr4B 79.592 196 27 12 324 513 618326278 618326090 1.860000e-25 128.0
50 TraesCS5B01G146300 chr4B 100.000 28 0 0 353 380 644824499 644824472 1.200000e-02 52.8
51 TraesCS5B01G146300 chr4A 90.159 315 29 2 6050 6362 577368805 577369119 5.940000e-110 409.0
52 TraesCS5B01G146300 chr4A 80.758 343 40 23 330 657 468415311 468414980 1.770000e-60 244.0
53 TraesCS5B01G146300 chr4D 78.440 705 91 34 182 827 17757392 17758094 2.760000e-108 403.0
54 TraesCS5B01G146300 chr4D 96.532 173 6 0 2719 2891 319247530 319247702 2.900000e-73 287.0
55 TraesCS5B01G146300 chr4D 77.368 190 32 8 279 461 17865754 17865569 1.130000e-17 102.0
56 TraesCS5B01G146300 chr6D 75.590 848 143 37 1 817 26668511 26669325 1.690000e-95 361.0
57 TraesCS5B01G146300 chr6D 95.954 173 7 0 2719 2891 169574226 169574054 1.350000e-71 281.0
58 TraesCS5B01G146300 chr6D 95.376 173 8 0 2719 2891 106030027 106030199 6.280000e-70 276.0
59 TraesCS5B01G146300 chr6D 95.376 173 8 0 2719 2891 150157298 150157126 6.280000e-70 276.0
60 TraesCS5B01G146300 chr6D 95.376 173 8 0 2719 2891 153191120 153190948 6.280000e-70 276.0
61 TraesCS5B01G146300 chr6D 95.376 173 8 0 2719 2891 181701455 181701283 6.280000e-70 276.0
62 TraesCS5B01G146300 chr6D 94.828 174 9 0 2718 2891 158356438 158356611 8.130000e-69 272.0
63 TraesCS5B01G146300 chr6D 94.798 173 9 0 2719 2891 211676328 211676500 2.920000e-68 270.0
64 TraesCS5B01G146300 chr6D 94.737 171 9 0 2719 2889 129710904 129710734 3.780000e-67 267.0
65 TraesCS5B01G146300 chr6D 92.857 182 11 2 2710 2891 242581181 242581002 4.890000e-66 263.0
66 TraesCS5B01G146300 chr3D 97.826 184 4 0 3587 3770 264712103 264712286 1.030000e-82 318.0
67 TraesCS5B01G146300 chr3D 97.283 184 5 0 3587 3770 225855033 225855216 4.790000e-81 313.0
68 TraesCS5B01G146300 chr3D 96.774 186 5 1 3587 3771 313292538 313292353 6.190000e-80 309.0
69 TraesCS5B01G146300 chr3D 86.777 121 10 5 3464 3582 270624883 270624999 5.180000e-26 130.0
70 TraesCS5B01G146300 chr3D 95.890 73 2 1 3340 3411 529794640 529794568 4.030000e-22 117.0
71 TraesCS5B01G146300 chr6B 95.789 190 8 0 3587 3776 694120329 694120140 2.230000e-79 307.0
72 TraesCS5B01G146300 chr6B 73.643 774 124 54 74 815 519782069 519782794 6.420000e-55 226.0
73 TraesCS5B01G146300 chr6B 78.201 289 45 16 346 629 531789478 531789753 1.100000e-37 169.0
74 TraesCS5B01G146300 chr6B 80.088 226 32 10 315 534 650952539 650952757 8.540000e-34 156.0
75 TraesCS5B01G146300 chr1A 95.954 173 7 0 2719 2891 396446038 396445866 1.350000e-71 281.0
76 TraesCS5B01G146300 chr6A 95.402 174 8 0 2718 2891 263902446 263902273 1.750000e-70 278.0
77 TraesCS5B01G146300 chr6A 74.140 843 135 47 1 817 332195016 332195801 8.130000e-69 272.0
78 TraesCS5B01G146300 chr6A 76.994 539 76 32 324 823 612579224 612579753 1.360000e-66 265.0
79 TraesCS5B01G146300 chr6A 81.341 343 38 22 330 657 367800950 367800619 8.190000e-64 255.0
80 TraesCS5B01G146300 chr1D 95.402 174 7 1 2719 2891 54972112 54972285 6.280000e-70 276.0
81 TraesCS5B01G146300 chr1D 95.376 173 8 0 2719 2891 138276046 138276218 6.280000e-70 276.0
82 TraesCS5B01G146300 chr1D 95.376 173 8 0 2719 2891 143343016 143342844 6.280000e-70 276.0
83 TraesCS5B01G146300 chr1D 88.060 67 6 2 324 389 463031021 463030956 1.900000e-10 78.7
84 TraesCS5B01G146300 chr3B 72.877 848 170 46 7 821 414160973 414160153 2.960000e-58 237.0
85 TraesCS5B01G146300 chr3B 80.831 313 44 14 324 629 700341133 700340830 1.380000e-56 231.0
86 TraesCS5B01G146300 chrUn 88.750 80 8 1 315 393 467716833 467716912 5.250000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G146300 chr5B 274347077 274353438 6361 False 3978.666667 11749 98.765333 1 6362 3 chr5B.!!$F4 6361
1 TraesCS5B01G146300 chr5B 274458217 274464660 6443 False 2206.480000 5478 98.051600 1 5878 5 chr5B.!!$F5 5877
2 TraesCS5B01G146300 chr5B 623745220 623745828 608 True 492.000000 492 81.433000 4 610 1 chr5B.!!$R1 606
3 TraesCS5B01G146300 chr5B 627327260 627327868 608 True 486.000000 486 81.270000 4 610 1 chr5B.!!$R2 606
4 TraesCS5B01G146300 chr5B 58385819 58386395 576 False 436.000000 436 80.479000 1 580 1 chr5B.!!$F1 579
5 TraesCS5B01G146300 chr5B 36371877 36375109 3232 False 401.750000 414 79.405500 1 710 4 chr5B.!!$F3 709
6 TraesCS5B01G146300 chr5A 382106511 382107232 721 False 1022.000000 1022 92.808000 2892 3587 1 chr5A.!!$F3 695
7 TraesCS5B01G146300 chr5A 444899609 444900331 722 True 1007.000000 1007 92.414000 2891 3587 1 chr5A.!!$R1 696
8 TraesCS5B01G146300 chr5A 29968170 29968697 527 False 333.000000 333 78.683000 1 571 1 chr5A.!!$F1 570
9 TraesCS5B01G146300 chr2D 561051059 561051789 730 True 963.000000 963 91.257000 2892 3587 1 chr2D.!!$R2 695
10 TraesCS5B01G146300 chr2D 537418338 537419070 732 False 955.000000 955 90.996000 2891 3587 1 chr2D.!!$F1 696
11 TraesCS5B01G146300 chr1B 662721015 662721747 732 True 917.000000 917 90.041000 2891 3587 1 chr1B.!!$R2 696
12 TraesCS5B01G146300 chr1B 629266649 629267176 527 False 252.000000 252 76.580000 324 823 1 chr1B.!!$F3 499
13 TraesCS5B01G146300 chr7A 162406390 162407119 729 False 885.000000 885 89.344000 2891 3587 1 chr7A.!!$F2 696
14 TraesCS5B01G146300 chr7A 683631831 683632655 824 True 322.000000 322 74.710000 1 831 1 chr7A.!!$R2 830
15 TraesCS5B01G146300 chr7A 129300509 129301296 787 False 272.000000 272 74.197000 1 809 1 chr7A.!!$F1 808
16 TraesCS5B01G146300 chr7D 592817284 592818440 1156 False 536.000000 665 94.322000 2883 3587 2 chr7D.!!$F2 704
17 TraesCS5B01G146300 chr5D 41669781 41670364 583 False 496.000000 496 82.149000 1 600 1 chr5D.!!$F1 599
18 TraesCS5B01G146300 chr4D 17757392 17758094 702 False 403.000000 403 78.440000 182 827 1 chr4D.!!$F1 645
19 TraesCS5B01G146300 chr6D 26668511 26669325 814 False 361.000000 361 75.590000 1 817 1 chr6D.!!$F1 816
20 TraesCS5B01G146300 chr6B 519782069 519782794 725 False 226.000000 226 73.643000 74 815 1 chr6B.!!$F1 741
21 TraesCS5B01G146300 chr6A 332195016 332195801 785 False 272.000000 272 74.140000 1 817 1 chr6A.!!$F1 816
22 TraesCS5B01G146300 chr6A 612579224 612579753 529 False 265.000000 265 76.994000 324 823 1 chr6A.!!$F2 499
23 TraesCS5B01G146300 chr3B 414160153 414160973 820 True 237.000000 237 72.877000 7 821 1 chr3B.!!$R1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 182 1.090052 ACGGGCAAGCGAATTCTAGC 61.090 55.000 3.52 0.29 0.00 3.42 F
1065 3064 0.531200 ATTTGACCTCGACCTCGACC 59.469 55.000 0.00 0.00 44.22 4.79 F
1066 3065 0.538977 TTTGACCTCGACCTCGACCT 60.539 55.000 0.00 0.00 44.22 3.85 F
1067 3066 0.959372 TTGACCTCGACCTCGACCTC 60.959 60.000 0.00 0.00 44.22 3.85 F
2187 4189 2.035449 CGTCACGGAATATAGGGCAAGA 59.965 50.000 0.00 0.00 0.00 3.02 F
2856 5448 2.354203 GCGGAGAATGTCAAGAGAGGTT 60.354 50.000 0.00 0.00 0.00 3.50 F
3375 6429 1.340017 TGATTGCGCCTAGGCTTCTTT 60.340 47.619 30.55 12.07 39.32 2.52 F
3451 6505 2.817258 CACACCAAATCCGGCTAGAAAA 59.183 45.455 0.00 0.00 0.00 2.29 F
5049 8315 0.678395 TTTGCACATTTGACGGGCAT 59.322 45.000 0.00 0.00 34.03 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1125 3124 7.833786 ACTCACCTATACTGACAAACGAATTA 58.166 34.615 0.00 0.0 0.00 1.40 R
2763 5288 0.321564 TGCCCAAACCATCTCAGACG 60.322 55.000 0.00 0.0 0.00 4.18 R
2856 5448 1.979308 TGTCAAATTCGGTCTACCCCA 59.021 47.619 0.00 0.0 0.00 4.96 R
2879 5471 3.999285 AGGGCCACGGACTCCTCT 61.999 66.667 6.18 0.0 0.00 3.69 R
3245 6290 2.258591 GCTCGAGTGGCTGAACGA 59.741 61.111 15.13 0.0 0.00 3.85 R
4657 7923 1.806542 ACCAGTGAGCAATAAAGCACG 59.193 47.619 0.00 0.0 36.43 5.34 R
5028 8294 1.069823 TGCCCGTCAAATGTGCAAAAT 59.930 42.857 0.00 0.0 0.00 1.82 R
5332 8598 3.554129 GCAACCATTTGTACCCCAACTTC 60.554 47.826 0.00 0.0 34.90 3.01 R
6054 9320 0.538287 GCTCTGCCTCCAAAACACCT 60.538 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 182 1.090052 ACGGGCAAGCGAATTCTAGC 61.090 55.000 3.52 0.29 0.00 3.42
537 2403 6.550843 TGATTTTGTAATATGCGGTGAACAG 58.449 36.000 0.00 0.00 0.00 3.16
755 2753 2.180159 ATTTCGTACGTGGGCCAGCT 62.180 55.000 16.05 0.00 0.00 4.24
1052 3051 3.979984 GTTCTTCTCGAGCGAATTTGAC 58.020 45.455 7.81 0.00 0.00 3.18
1053 3052 2.607187 TCTTCTCGAGCGAATTTGACC 58.393 47.619 7.81 0.00 0.00 4.02
1054 3053 2.231478 TCTTCTCGAGCGAATTTGACCT 59.769 45.455 7.81 0.00 0.00 3.85
1055 3054 2.279582 TCTCGAGCGAATTTGACCTC 57.720 50.000 7.81 0.00 0.00 3.85
1056 3055 0.917259 CTCGAGCGAATTTGACCTCG 59.083 55.000 13.59 13.59 46.11 4.63
1059 3058 1.000145 GAGCGAATTTGACCTCGACC 59.000 55.000 0.00 0.00 37.23 4.79
1060 3059 0.608640 AGCGAATTTGACCTCGACCT 59.391 50.000 0.00 0.00 37.23 3.85
1061 3060 1.000145 GCGAATTTGACCTCGACCTC 59.000 55.000 0.00 0.00 37.23 3.85
1062 3061 1.269166 CGAATTTGACCTCGACCTCG 58.731 55.000 0.00 0.00 37.23 4.63
1064 3063 2.260481 GAATTTGACCTCGACCTCGAC 58.740 52.381 0.00 0.00 44.22 4.20
1065 3064 0.531200 ATTTGACCTCGACCTCGACC 59.469 55.000 0.00 0.00 44.22 4.79
1066 3065 0.538977 TTTGACCTCGACCTCGACCT 60.539 55.000 0.00 0.00 44.22 3.85
1067 3066 0.959372 TTGACCTCGACCTCGACCTC 60.959 60.000 0.00 0.00 44.22 3.85
1068 3067 2.436292 ACCTCGACCTCGACCTCG 60.436 66.667 0.00 1.30 44.22 4.63
1145 3144 5.175126 CGGCTAATTCGTTTGTCAGTATAGG 59.825 44.000 0.00 0.00 0.00 2.57
1560 3559 3.074836 TGGGTTTCTTTAGGGTTTCGGAT 59.925 43.478 0.00 0.00 0.00 4.18
1882 3884 2.305607 GGGTGACTGGGGGCACATA 61.306 63.158 4.36 0.00 36.76 2.29
2187 4189 2.035449 CGTCACGGAATATAGGGCAAGA 59.965 50.000 0.00 0.00 0.00 3.02
2387 4389 7.639113 ACACTTATTTTCTGAAAGGTCAACA 57.361 32.000 2.75 0.00 31.88 3.33
2525 4527 6.856938 CGCATTACCTTAGCTAGTAGTAACTG 59.143 42.308 12.04 11.98 36.36 3.16
2536 4538 6.153680 AGCTAGTAGTAACTGCTTGATTGAGT 59.846 38.462 0.00 0.00 37.01 3.41
2763 5288 6.486253 TTGATGAGTAGCTTGTTCAACATC 57.514 37.500 0.00 0.00 35.13 3.06
2804 5329 4.834453 CAGCGCAGGCCTCCAGAG 62.834 72.222 11.47 0.00 41.24 3.35
2856 5448 2.354203 GCGGAGAATGTCAAGAGAGGTT 60.354 50.000 0.00 0.00 0.00 3.50
2879 5471 3.370103 GGGGTAGACCGAATTTGACATGA 60.370 47.826 0.00 0.00 41.60 3.07
2987 5579 5.594725 CAGGTGGAGTTAGATAGCAGTTAGA 59.405 44.000 0.00 0.00 0.00 2.10
3301 6346 4.745751 CCCGTCGCCGTTAAGCCA 62.746 66.667 0.00 0.00 0.00 4.75
3302 6347 3.484547 CCGTCGCCGTTAAGCCAC 61.485 66.667 0.00 0.00 0.00 5.01
3303 6348 2.431942 CGTCGCCGTTAAGCCACT 60.432 61.111 0.00 0.00 0.00 4.00
3304 6349 2.442188 CGTCGCCGTTAAGCCACTC 61.442 63.158 0.00 0.00 0.00 3.51
3305 6350 2.126228 TCGCCGTTAAGCCACTCG 60.126 61.111 0.00 0.00 0.00 4.18
3306 6351 2.126228 CGCCGTTAAGCCACTCGA 60.126 61.111 0.00 0.00 0.00 4.04
3375 6429 1.340017 TGATTGCGCCTAGGCTTCTTT 60.340 47.619 30.55 12.07 39.32 2.52
3451 6505 2.817258 CACACCAAATCCGGCTAGAAAA 59.183 45.455 0.00 0.00 0.00 2.29
4115 7381 7.060421 TGTTTCTTTCCTCCTGTTTGATAAGT 58.940 34.615 0.00 0.00 0.00 2.24
4380 7646 5.329399 ACCATCATTTAGTGGTGCCTTTTA 58.671 37.500 0.00 0.00 46.55 1.52
4558 7824 4.850680 TGGCTTTGATATAAAACCGGAGT 58.149 39.130 9.46 0.00 0.00 3.85
4766 8032 3.682858 TGCCTCGTTGCTTTATTACTGAC 59.317 43.478 1.05 0.00 0.00 3.51
4897 8163 3.971245 AGTCACTTCCTTCAGGATGTC 57.029 47.619 10.72 2.88 45.95 3.06
4911 8177 7.174599 CCTTCAGGATGTCTCATCCATTAATTC 59.825 40.741 24.56 2.18 40.61 2.17
5049 8315 0.678395 TTTGCACATTTGACGGGCAT 59.322 45.000 0.00 0.00 34.03 4.40
5136 8402 4.194640 AGTTAGTGGCTGATGCACATAAG 58.805 43.478 0.00 0.00 41.91 1.73
5331 8597 3.552604 GCTTTTGAAGCGGACATACAA 57.447 42.857 0.00 0.00 45.74 2.41
5332 8598 3.492313 GCTTTTGAAGCGGACATACAAG 58.508 45.455 0.00 0.00 45.74 3.16
5402 8668 2.890808 TCTGCCCATTCGTAGTGATC 57.109 50.000 0.00 0.00 0.00 2.92
5565 8831 2.842208 TGAGCGTTTTCAACCAAGTG 57.158 45.000 0.00 0.00 0.00 3.16
5590 8856 7.340743 TGCCTTTTGTAAGCTTTGCCTATTATA 59.659 33.333 3.20 0.00 0.00 0.98
5731 8997 3.246699 CGTGTCCGTACAACAAGTTCAAT 59.753 43.478 0.00 0.00 37.36 2.57
5892 9158 9.632807 TGATTAACAAAATATGTGTAGTTTGCC 57.367 29.630 7.91 0.00 45.12 4.52
5893 9159 9.632807 GATTAACAAAATATGTGTAGTTTGCCA 57.367 29.630 7.91 0.00 45.12 4.92
5894 9160 8.804688 TTAACAAAATATGTGTAGTTTGCCAC 57.195 30.769 7.91 0.00 45.12 5.01
5895 9161 6.398234 ACAAAATATGTGTAGTTTGCCACA 57.602 33.333 7.91 0.00 45.12 4.17
5896 9162 6.810911 ACAAAATATGTGTAGTTTGCCACAA 58.189 32.000 7.91 0.00 45.12 3.33
5897 9163 7.268586 ACAAAATATGTGTAGTTTGCCACAAA 58.731 30.769 7.91 0.00 45.12 2.83
5898 9164 7.437862 ACAAAATATGTGTAGTTTGCCACAAAG 59.562 33.333 7.91 0.00 45.12 2.77
5899 9165 6.892658 AATATGTGTAGTTTGCCACAAAGA 57.107 33.333 0.00 0.00 44.10 2.52
5900 9166 4.836125 ATGTGTAGTTTGCCACAAAGAG 57.164 40.909 0.00 0.00 44.10 2.85
5901 9167 2.357637 TGTGTAGTTTGCCACAAAGAGC 59.642 45.455 0.00 0.00 38.56 4.09
5902 9168 2.357637 GTGTAGTTTGCCACAAAGAGCA 59.642 45.455 0.00 0.00 37.18 4.26
5903 9169 3.020274 TGTAGTTTGCCACAAAGAGCAA 58.980 40.909 0.00 0.00 46.74 3.91
5908 9174 2.582728 TGCCACAAAGAGCAAGTTTG 57.417 45.000 4.43 4.43 40.18 2.93
5909 9175 1.136695 TGCCACAAAGAGCAAGTTTGG 59.863 47.619 9.43 0.00 38.90 3.28
5910 9176 1.408702 GCCACAAAGAGCAAGTTTGGA 59.591 47.619 9.43 0.00 38.90 3.53
5911 9177 2.159114 GCCACAAAGAGCAAGTTTGGAA 60.159 45.455 9.43 0.00 38.90 3.53
5912 9178 3.678529 GCCACAAAGAGCAAGTTTGGAAA 60.679 43.478 9.43 0.00 38.90 3.13
5913 9179 3.865164 CCACAAAGAGCAAGTTTGGAAAC 59.135 43.478 9.43 0.00 38.90 2.78
5923 9189 3.503800 AGTTTGGAAACTCTACCCCAC 57.496 47.619 0.00 0.00 45.65 4.61
5924 9190 3.053826 AGTTTGGAAACTCTACCCCACT 58.946 45.455 0.00 0.00 45.65 4.00
5925 9191 3.146847 GTTTGGAAACTCTACCCCACTG 58.853 50.000 0.00 0.00 36.03 3.66
5926 9192 2.112279 TGGAAACTCTACCCCACTGT 57.888 50.000 0.00 0.00 0.00 3.55
5927 9193 2.414612 TGGAAACTCTACCCCACTGTT 58.585 47.619 0.00 0.00 0.00 3.16
5928 9194 2.370849 TGGAAACTCTACCCCACTGTTC 59.629 50.000 0.00 0.00 0.00 3.18
5929 9195 2.638363 GGAAACTCTACCCCACTGTTCT 59.362 50.000 0.00 0.00 0.00 3.01
5930 9196 3.072622 GGAAACTCTACCCCACTGTTCTT 59.927 47.826 0.00 0.00 0.00 2.52
5931 9197 4.316645 GAAACTCTACCCCACTGTTCTTC 58.683 47.826 0.00 0.00 0.00 2.87
5932 9198 3.261818 ACTCTACCCCACTGTTCTTCT 57.738 47.619 0.00 0.00 0.00 2.85
5933 9199 3.166679 ACTCTACCCCACTGTTCTTCTC 58.833 50.000 0.00 0.00 0.00 2.87
5934 9200 3.181416 ACTCTACCCCACTGTTCTTCTCT 60.181 47.826 0.00 0.00 0.00 3.10
5935 9201 3.835395 CTCTACCCCACTGTTCTTCTCTT 59.165 47.826 0.00 0.00 0.00 2.85
5936 9202 5.006896 TCTACCCCACTGTTCTTCTCTTA 57.993 43.478 0.00 0.00 0.00 2.10
5937 9203 5.017490 TCTACCCCACTGTTCTTCTCTTAG 58.983 45.833 0.00 0.00 0.00 2.18
5938 9204 3.588569 ACCCCACTGTTCTTCTCTTAGT 58.411 45.455 0.00 0.00 0.00 2.24
5939 9205 3.325135 ACCCCACTGTTCTTCTCTTAGTG 59.675 47.826 0.00 0.00 38.70 2.74
5940 9206 3.330267 CCCACTGTTCTTCTCTTAGTGC 58.670 50.000 0.00 0.00 37.89 4.40
5941 9207 3.007398 CCCACTGTTCTTCTCTTAGTGCT 59.993 47.826 0.00 0.00 37.89 4.40
5942 9208 4.503991 CCCACTGTTCTTCTCTTAGTGCTT 60.504 45.833 0.00 0.00 37.89 3.91
5943 9209 5.059833 CCACTGTTCTTCTCTTAGTGCTTT 58.940 41.667 0.00 0.00 37.89 3.51
5944 9210 5.529060 CCACTGTTCTTCTCTTAGTGCTTTT 59.471 40.000 0.00 0.00 37.89 2.27
5945 9211 6.038714 CCACTGTTCTTCTCTTAGTGCTTTTT 59.961 38.462 0.00 0.00 37.89 1.94
5973 9239 4.965119 CTGTTTCCCAGCCATTACTTAC 57.035 45.455 0.00 0.00 33.59 2.34
5974 9240 4.589908 CTGTTTCCCAGCCATTACTTACT 58.410 43.478 0.00 0.00 33.59 2.24
5975 9241 4.585879 TGTTTCCCAGCCATTACTTACTC 58.414 43.478 0.00 0.00 0.00 2.59
5976 9242 3.926058 TTCCCAGCCATTACTTACTCC 57.074 47.619 0.00 0.00 0.00 3.85
5977 9243 2.124411 TCCCAGCCATTACTTACTCCC 58.876 52.381 0.00 0.00 0.00 4.30
5978 9244 2.127708 CCCAGCCATTACTTACTCCCT 58.872 52.381 0.00 0.00 0.00 4.20
5979 9245 2.509964 CCCAGCCATTACTTACTCCCTT 59.490 50.000 0.00 0.00 0.00 3.95
5980 9246 3.433740 CCCAGCCATTACTTACTCCCTTC 60.434 52.174 0.00 0.00 0.00 3.46
5981 9247 3.458189 CAGCCATTACTTACTCCCTTCG 58.542 50.000 0.00 0.00 0.00 3.79
5982 9248 3.105283 AGCCATTACTTACTCCCTTCGT 58.895 45.455 0.00 0.00 0.00 3.85
5983 9249 3.518303 AGCCATTACTTACTCCCTTCGTT 59.482 43.478 0.00 0.00 0.00 3.85
5984 9250 4.019591 AGCCATTACTTACTCCCTTCGTTT 60.020 41.667 0.00 0.00 0.00 3.60
5985 9251 4.698780 GCCATTACTTACTCCCTTCGTTTT 59.301 41.667 0.00 0.00 0.00 2.43
5986 9252 5.182570 GCCATTACTTACTCCCTTCGTTTTT 59.817 40.000 0.00 0.00 0.00 1.94
5987 9253 6.372381 GCCATTACTTACTCCCTTCGTTTTTA 59.628 38.462 0.00 0.00 0.00 1.52
5988 9254 7.094677 GCCATTACTTACTCCCTTCGTTTTTAA 60.095 37.037 0.00 0.00 0.00 1.52
5989 9255 8.785946 CCATTACTTACTCCCTTCGTTTTTAAA 58.214 33.333 0.00 0.00 0.00 1.52
5992 9258 7.812690 ACTTACTCCCTTCGTTTTTAAATGT 57.187 32.000 0.00 0.00 0.00 2.71
5993 9259 7.868775 ACTTACTCCCTTCGTTTTTAAATGTC 58.131 34.615 0.00 0.00 0.00 3.06
5994 9260 7.718314 ACTTACTCCCTTCGTTTTTAAATGTCT 59.282 33.333 0.00 0.00 0.00 3.41
5995 9261 6.954487 ACTCCCTTCGTTTTTAAATGTCTT 57.046 33.333 0.00 0.00 0.00 3.01
5996 9262 6.967135 ACTCCCTTCGTTTTTAAATGTCTTC 58.033 36.000 0.00 0.00 0.00 2.87
5997 9263 6.771267 ACTCCCTTCGTTTTTAAATGTCTTCT 59.229 34.615 0.00 0.00 0.00 2.85
5998 9264 7.284716 ACTCCCTTCGTTTTTAAATGTCTTCTT 59.715 33.333 0.00 0.00 0.00 2.52
5999 9265 7.422399 TCCCTTCGTTTTTAAATGTCTTCTTG 58.578 34.615 0.00 0.00 0.00 3.02
6000 9266 6.640907 CCCTTCGTTTTTAAATGTCTTCTTGG 59.359 38.462 0.00 0.00 0.00 3.61
6001 9267 7.422399 CCTTCGTTTTTAAATGTCTTCTTGGA 58.578 34.615 0.00 0.00 0.00 3.53
6002 9268 7.591426 CCTTCGTTTTTAAATGTCTTCTTGGAG 59.409 37.037 0.00 0.00 0.00 3.86
6003 9269 7.795482 TCGTTTTTAAATGTCTTCTTGGAGA 57.205 32.000 0.00 0.00 0.00 3.71
6004 9270 8.391075 TCGTTTTTAAATGTCTTCTTGGAGAT 57.609 30.769 0.00 0.00 0.00 2.75
6005 9271 8.846211 TCGTTTTTAAATGTCTTCTTGGAGATT 58.154 29.630 0.00 0.00 31.83 2.40
6006 9272 9.463443 CGTTTTTAAATGTCTTCTTGGAGATTT 57.537 29.630 0.00 0.00 40.57 2.17
6009 9275 9.965824 TTTTAAATGTCTTCTTGGAGATTTCAC 57.034 29.630 3.51 0.00 39.09 3.18
6010 9276 8.924511 TTAAATGTCTTCTTGGAGATTTCACT 57.075 30.769 3.51 0.00 39.09 3.41
6014 9280 9.829507 AATGTCTTCTTGGAGATTTCACTATAG 57.170 33.333 0.00 0.00 0.00 1.31
6015 9281 8.595362 TGTCTTCTTGGAGATTTCACTATAGA 57.405 34.615 6.78 0.00 0.00 1.98
6016 9282 8.470805 TGTCTTCTTGGAGATTTCACTATAGAC 58.529 37.037 6.78 0.00 0.00 2.59
6017 9283 8.691797 GTCTTCTTGGAGATTTCACTATAGACT 58.308 37.037 6.78 0.00 0.00 3.24
6018 9284 9.922477 TCTTCTTGGAGATTTCACTATAGACTA 57.078 33.333 6.78 0.00 0.00 2.59
6019 9285 9.959749 CTTCTTGGAGATTTCACTATAGACTAC 57.040 37.037 6.78 0.00 0.00 2.73
6020 9286 9.475620 TTCTTGGAGATTTCACTATAGACTACA 57.524 33.333 6.78 0.60 0.00 2.74
6021 9287 9.647918 TCTTGGAGATTTCACTATAGACTACAT 57.352 33.333 6.78 0.00 0.00 2.29
6030 9296 9.601810 TTTCACTATAGACTACATATGGGATGT 57.398 33.333 6.78 0.00 36.13 3.06
6039 9305 9.715119 AGACTACATATGGGATGTATATAGCAA 57.285 33.333 7.80 0.00 34.42 3.91
6060 9326 8.870075 AGCAATATTTTAGAGAGAAAGGTGTT 57.130 30.769 0.00 0.00 0.00 3.32
6061 9327 9.301897 AGCAATATTTTAGAGAGAAAGGTGTTT 57.698 29.630 0.00 0.00 0.00 2.83
6062 9328 9.914131 GCAATATTTTAGAGAGAAAGGTGTTTT 57.086 29.630 0.00 0.00 0.00 2.43
6065 9331 9.807921 ATATTTTAGAGAGAAAGGTGTTTTGGA 57.192 29.630 0.00 0.00 0.00 3.53
6066 9332 7.568199 TTTTAGAGAGAAAGGTGTTTTGGAG 57.432 36.000 0.00 0.00 0.00 3.86
6067 9333 4.092116 AGAGAGAAAGGTGTTTTGGAGG 57.908 45.455 0.00 0.00 0.00 4.30
6068 9334 2.554462 GAGAGAAAGGTGTTTTGGAGGC 59.446 50.000 0.00 0.00 0.00 4.70
6069 9335 2.091885 AGAGAAAGGTGTTTTGGAGGCA 60.092 45.455 0.00 0.00 0.00 4.75
6070 9336 2.294512 GAGAAAGGTGTTTTGGAGGCAG 59.705 50.000 0.00 0.00 0.00 4.85
6071 9337 2.091885 AGAAAGGTGTTTTGGAGGCAGA 60.092 45.455 0.00 0.00 0.00 4.26
6072 9338 1.986882 AAGGTGTTTTGGAGGCAGAG 58.013 50.000 0.00 0.00 0.00 3.35
6073 9339 0.538287 AGGTGTTTTGGAGGCAGAGC 60.538 55.000 0.00 0.00 0.00 4.09
6074 9340 0.538287 GGTGTTTTGGAGGCAGAGCT 60.538 55.000 0.00 0.00 0.00 4.09
6075 9341 0.877743 GTGTTTTGGAGGCAGAGCTC 59.122 55.000 5.27 5.27 0.00 4.09
6076 9342 0.250901 TGTTTTGGAGGCAGAGCTCC 60.251 55.000 10.93 0.00 40.05 4.70
6077 9343 0.250901 GTTTTGGAGGCAGAGCTCCA 60.251 55.000 10.93 5.42 46.84 3.86
6079 9345 3.317109 TGGAGGCAGAGCTCCATG 58.683 61.111 10.93 4.12 44.02 3.66
6080 9346 2.372890 TGGAGGCAGAGCTCCATGG 61.373 63.158 10.93 4.97 44.02 3.66
6081 9347 2.068821 GGAGGCAGAGCTCCATGGA 61.069 63.158 15.27 15.27 39.45 3.41
6082 9348 1.446791 GAGGCAGAGCTCCATGGAG 59.553 63.158 33.73 33.73 44.56 3.86
6083 9349 2.042404 GAGGCAGAGCTCCATGGAGG 62.042 65.000 36.92 23.72 42.19 4.30
6084 9350 2.203181 GCAGAGCTCCATGGAGGC 60.203 66.667 36.92 28.42 42.19 4.70
6085 9351 2.509916 CAGAGCTCCATGGAGGCC 59.490 66.667 36.92 23.97 42.19 5.19
6086 9352 2.071262 CAGAGCTCCATGGAGGCCT 61.071 63.158 36.92 27.78 42.19 5.19
6087 9353 1.307691 AGAGCTCCATGGAGGCCTT 60.308 57.895 36.92 19.35 42.19 4.35
6096 9362 5.128663 GCTCCATGGAGGCCTTTATTTTTAA 59.871 40.000 36.92 0.77 42.19 1.52
6099 9365 7.978925 TCCATGGAGGCCTTTATTTTTAAAAA 58.021 30.769 11.44 15.38 37.29 1.94
6100 9366 8.100164 TCCATGGAGGCCTTTATTTTTAAAAAG 58.900 33.333 11.44 5.16 37.29 2.27
6102 9368 9.283768 CATGGAGGCCTTTATTTTTAAAAAGTT 57.716 29.630 17.72 5.87 32.02 2.66
6103 9369 8.896320 TGGAGGCCTTTATTTTTAAAAAGTTC 57.104 30.769 17.72 7.06 32.02 3.01
6105 9371 8.988934 GGAGGCCTTTATTTTTAAAAAGTTCAG 58.011 33.333 17.72 10.79 32.02 3.02
6106 9372 8.902540 AGGCCTTTATTTTTAAAAAGTTCAGG 57.097 30.769 17.72 18.02 32.02 3.86
6107 9373 8.491134 AGGCCTTTATTTTTAAAAAGTTCAGGT 58.509 29.630 17.72 3.24 32.02 4.00
6162 9428 8.579850 AAAAATATGTGTGTATGTCAGGATGT 57.420 30.769 0.00 0.00 37.40 3.06
6163 9429 9.679661 AAAAATATGTGTGTATGTCAGGATGTA 57.320 29.630 0.00 0.00 37.40 2.29
6165 9431 8.662781 AATATGTGTGTATGTCAGGATGTAAC 57.337 34.615 0.00 0.00 37.40 2.50
6167 9433 5.720202 TGTGTGTATGTCAGGATGTAACTC 58.280 41.667 0.00 0.00 37.40 3.01
6168 9434 5.245075 TGTGTGTATGTCAGGATGTAACTCA 59.755 40.000 0.00 0.00 37.40 3.41
6169 9435 5.577164 GTGTGTATGTCAGGATGTAACTCAC 59.423 44.000 0.00 0.00 37.40 3.51
6170 9436 5.245075 TGTGTATGTCAGGATGTAACTCACA 59.755 40.000 0.00 0.00 42.69 3.58
6183 9449 7.744087 ATGTAACTCACATGTGTGTACAAAT 57.256 32.000 28.35 18.41 46.41 2.32
6184 9450 7.561021 TGTAACTCACATGTGTGTACAAATT 57.439 32.000 28.35 16.79 45.76 1.82
6185 9451 7.635423 TGTAACTCACATGTGTGTACAAATTC 58.365 34.615 28.35 14.03 45.76 2.17
6187 9453 6.882610 ACTCACATGTGTGTACAAATTCAT 57.117 33.333 27.36 3.57 45.76 2.57
6190 9456 7.175467 ACTCACATGTGTGTACAAATTCATCAT 59.825 33.333 27.36 2.52 45.76 2.45
6191 9457 7.306953 TCACATGTGTGTACAAATTCATCATG 58.693 34.615 24.63 10.53 45.76 3.07
6195 9461 9.361315 CATGTGTGTACAAATTCATCATGAAAT 57.639 29.630 3.63 0.00 39.02 2.17
6197 9463 9.838975 TGTGTGTACAAATTCATCATGAAATAC 57.161 29.630 3.63 5.96 35.32 1.89
6198 9464 9.289303 GTGTGTACAAATTCATCATGAAATACC 57.711 33.333 3.63 1.68 40.12 2.73
6199 9465 9.241919 TGTGTACAAATTCATCATGAAATACCT 57.758 29.630 3.63 0.00 40.12 3.08
6204 9470 9.028284 ACAAATTCATCATGAAATACCTTGAGT 57.972 29.630 3.63 0.00 40.12 3.41
6205 9471 9.865321 CAAATTCATCATGAAATACCTTGAGTT 57.135 29.630 3.63 0.00 40.12 3.01
6209 9475 9.904198 TTCATCATGAAATACCTTGAGTTATGA 57.096 29.630 0.00 0.00 32.71 2.15
6210 9476 9.330063 TCATCATGAAATACCTTGAGTTATGAC 57.670 33.333 0.00 0.00 0.00 3.06
6211 9477 8.562892 CATCATGAAATACCTTGAGTTATGACC 58.437 37.037 0.00 0.00 0.00 4.02
6212 9478 7.861629 TCATGAAATACCTTGAGTTATGACCT 58.138 34.615 0.00 0.00 0.00 3.85
6213 9479 7.770433 TCATGAAATACCTTGAGTTATGACCTG 59.230 37.037 0.00 0.00 0.00 4.00
6214 9480 7.016153 TGAAATACCTTGAGTTATGACCTGT 57.984 36.000 0.00 0.00 0.00 4.00
6215 9481 8.141298 TGAAATACCTTGAGTTATGACCTGTA 57.859 34.615 0.00 0.00 0.00 2.74
6216 9482 8.038944 TGAAATACCTTGAGTTATGACCTGTAC 58.961 37.037 0.00 0.00 0.00 2.90
6217 9483 7.490657 AATACCTTGAGTTATGACCTGTACA 57.509 36.000 0.00 0.00 0.00 2.90
6218 9484 5.818678 ACCTTGAGTTATGACCTGTACAA 57.181 39.130 0.00 0.00 0.00 2.41
6219 9485 6.182507 ACCTTGAGTTATGACCTGTACAAA 57.817 37.500 0.00 0.00 0.00 2.83
6220 9486 6.597562 ACCTTGAGTTATGACCTGTACAAAA 58.402 36.000 0.00 0.00 0.00 2.44
6221 9487 7.057894 ACCTTGAGTTATGACCTGTACAAAAA 58.942 34.615 0.00 0.00 0.00 1.94
6245 9511 7.722949 AAAATAAATTCATGGCCTGAGAAGA 57.277 32.000 3.32 0.00 34.68 2.87
6246 9512 7.909485 AAATAAATTCATGGCCTGAGAAGAT 57.091 32.000 3.32 1.70 34.68 2.40
6247 9513 6.896021 ATAAATTCATGGCCTGAGAAGATG 57.104 37.500 3.32 0.00 34.68 2.90
6248 9514 4.515028 AATTCATGGCCTGAGAAGATGA 57.485 40.909 3.32 0.00 34.68 2.92
6249 9515 4.515028 ATTCATGGCCTGAGAAGATGAA 57.485 40.909 13.08 13.08 37.42 2.57
6250 9516 4.515028 TTCATGGCCTGAGAAGATGAAT 57.485 40.909 3.32 0.00 34.68 2.57
6251 9517 5.635278 TTCATGGCCTGAGAAGATGAATA 57.365 39.130 3.32 0.00 34.68 1.75
6252 9518 5.224821 TCATGGCCTGAGAAGATGAATAG 57.775 43.478 3.32 0.00 0.00 1.73
6253 9519 4.657504 TCATGGCCTGAGAAGATGAATAGT 59.342 41.667 3.32 0.00 0.00 2.12
6254 9520 5.840693 TCATGGCCTGAGAAGATGAATAGTA 59.159 40.000 3.32 0.00 0.00 1.82
6255 9521 6.499699 TCATGGCCTGAGAAGATGAATAGTAT 59.500 38.462 3.32 0.00 0.00 2.12
6256 9522 6.352016 TGGCCTGAGAAGATGAATAGTATC 57.648 41.667 3.32 0.00 0.00 2.24
6257 9523 5.840693 TGGCCTGAGAAGATGAATAGTATCA 59.159 40.000 3.32 0.00 0.00 2.15
6258 9524 6.499699 TGGCCTGAGAAGATGAATAGTATCAT 59.500 38.462 3.32 0.00 42.62 2.45
6259 9525 6.817641 GGCCTGAGAAGATGAATAGTATCATG 59.182 42.308 0.00 0.00 40.08 3.07
6260 9526 7.385267 GCCTGAGAAGATGAATAGTATCATGT 58.615 38.462 0.00 0.00 40.08 3.21
6261 9527 7.331440 GCCTGAGAAGATGAATAGTATCATGTG 59.669 40.741 0.00 0.00 40.08 3.21
6262 9528 8.366401 CCTGAGAAGATGAATAGTATCATGTGT 58.634 37.037 0.00 0.00 40.08 3.72
6263 9529 9.761504 CTGAGAAGATGAATAGTATCATGTGTT 57.238 33.333 0.00 0.00 40.08 3.32
6271 9537 9.712305 ATGAATAGTATCATGTGTTAAGTAGCC 57.288 33.333 0.00 0.00 38.59 3.93
6272 9538 8.924303 TGAATAGTATCATGTGTTAAGTAGCCT 58.076 33.333 0.00 0.00 0.00 4.58
6273 9539 9.413048 GAATAGTATCATGTGTTAAGTAGCCTC 57.587 37.037 0.00 0.00 0.00 4.70
6274 9540 6.791867 AGTATCATGTGTTAAGTAGCCTCA 57.208 37.500 0.00 0.00 0.00 3.86
6275 9541 6.810911 AGTATCATGTGTTAAGTAGCCTCAG 58.189 40.000 0.00 0.00 0.00 3.35
6276 9542 5.939764 ATCATGTGTTAAGTAGCCTCAGA 57.060 39.130 0.00 0.00 0.00 3.27
6277 9543 5.939764 TCATGTGTTAAGTAGCCTCAGAT 57.060 39.130 0.00 0.00 0.00 2.90
6278 9544 6.299805 TCATGTGTTAAGTAGCCTCAGATT 57.700 37.500 0.00 0.00 0.00 2.40
6279 9545 6.711277 TCATGTGTTAAGTAGCCTCAGATTT 58.289 36.000 0.00 0.00 0.00 2.17
6280 9546 6.595326 TCATGTGTTAAGTAGCCTCAGATTTG 59.405 38.462 0.00 0.00 0.00 2.32
6281 9547 5.865085 TGTGTTAAGTAGCCTCAGATTTGT 58.135 37.500 0.00 0.00 0.00 2.83
6282 9548 5.932303 TGTGTTAAGTAGCCTCAGATTTGTC 59.068 40.000 0.00 0.00 0.00 3.18
6283 9549 6.166982 GTGTTAAGTAGCCTCAGATTTGTCT 58.833 40.000 0.00 0.00 0.00 3.41
6284 9550 6.651225 GTGTTAAGTAGCCTCAGATTTGTCTT 59.349 38.462 0.00 0.00 0.00 3.01
6285 9551 7.173390 GTGTTAAGTAGCCTCAGATTTGTCTTT 59.827 37.037 0.00 0.00 0.00 2.52
6286 9552 7.719633 TGTTAAGTAGCCTCAGATTTGTCTTTT 59.280 33.333 0.00 0.00 0.00 2.27
6287 9553 8.568794 GTTAAGTAGCCTCAGATTTGTCTTTTT 58.431 33.333 0.00 0.00 0.00 1.94
6305 9571 2.804986 TTTGCACAGCCCTCATATCA 57.195 45.000 0.00 0.00 0.00 2.15
6306 9572 2.804986 TTGCACAGCCCTCATATCAA 57.195 45.000 0.00 0.00 0.00 2.57
6307 9573 3.301794 TTGCACAGCCCTCATATCAAT 57.698 42.857 0.00 0.00 0.00 2.57
6308 9574 2.578786 TGCACAGCCCTCATATCAATG 58.421 47.619 0.00 0.00 0.00 2.82
6309 9575 2.092267 TGCACAGCCCTCATATCAATGT 60.092 45.455 0.00 0.00 34.50 2.71
6310 9576 3.136260 TGCACAGCCCTCATATCAATGTA 59.864 43.478 0.00 0.00 34.50 2.29
6311 9577 4.202493 TGCACAGCCCTCATATCAATGTAT 60.202 41.667 0.00 0.00 34.50 2.29
6312 9578 4.763793 GCACAGCCCTCATATCAATGTATT 59.236 41.667 0.00 0.00 34.50 1.89
6313 9579 5.242393 GCACAGCCCTCATATCAATGTATTT 59.758 40.000 0.00 0.00 34.50 1.40
6314 9580 6.239120 GCACAGCCCTCATATCAATGTATTTT 60.239 38.462 0.00 0.00 34.50 1.82
6315 9581 7.143340 CACAGCCCTCATATCAATGTATTTTG 58.857 38.462 0.00 0.00 34.50 2.44
6316 9582 7.013559 CACAGCCCTCATATCAATGTATTTTGA 59.986 37.037 0.00 0.00 39.77 2.69
6317 9583 7.560991 ACAGCCCTCATATCAATGTATTTTGAA 59.439 33.333 0.00 0.00 38.98 2.69
6318 9584 7.864379 CAGCCCTCATATCAATGTATTTTGAAC 59.136 37.037 0.00 0.00 38.98 3.18
6319 9585 7.781693 AGCCCTCATATCAATGTATTTTGAACT 59.218 33.333 0.00 0.00 38.98 3.01
6320 9586 7.864379 GCCCTCATATCAATGTATTTTGAACTG 59.136 37.037 0.00 0.00 38.98 3.16
6321 9587 9.123902 CCCTCATATCAATGTATTTTGAACTGA 57.876 33.333 0.00 0.00 38.98 3.41
6337 9603 8.994429 TTTGAACTGAAAATTTACACACATGT 57.006 26.923 0.00 0.00 43.30 3.21
6352 9618 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
6353 9619 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
6354 9620 4.081406 ACATGTGTGTTATGCCTTCATGT 58.919 39.130 0.00 0.00 39.25 3.21
6355 9621 5.123661 CACATGTGTGTTATGCCTTCATGTA 59.876 40.000 18.03 0.00 41.14 2.29
6356 9622 5.887598 ACATGTGTGTTATGCCTTCATGTAT 59.112 36.000 0.00 0.00 41.23 2.29
6357 9623 7.012232 CACATGTGTGTTATGCCTTCATGTATA 59.988 37.037 18.03 0.00 41.14 1.47
6358 9624 7.720957 ACATGTGTGTTATGCCTTCATGTATAT 59.279 33.333 0.00 0.00 41.23 0.86
6359 9625 7.728847 TGTGTGTTATGCCTTCATGTATATC 57.271 36.000 0.00 0.00 34.22 1.63
6360 9626 7.508687 TGTGTGTTATGCCTTCATGTATATCT 58.491 34.615 0.00 0.00 34.22 1.98
6361 9627 7.442062 TGTGTGTTATGCCTTCATGTATATCTG 59.558 37.037 0.00 0.00 34.22 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 182 2.794910 CCATCACGCCTCATACTTAACG 59.205 50.000 0.00 0.00 0.00 3.18
647 2559 2.600470 TTTGCTTTCAGTTTGCTGGG 57.400 45.000 0.00 0.00 42.78 4.45
755 2753 3.423539 CCTGAAGGGATGACAACTTGA 57.576 47.619 0.00 0.00 37.23 3.02
872 2871 4.499633 CGGGTAAATGGGCCGGCT 62.500 66.667 28.56 8.66 0.00 5.52
991 2990 4.147449 TCGCCCCATCGCTGTCTG 62.147 66.667 0.00 0.00 0.00 3.51
1125 3124 7.833786 ACTCACCTATACTGACAAACGAATTA 58.166 34.615 0.00 0.00 0.00 1.40
2187 4189 5.061721 AGGAAAAGGTGGAACTAACATGT 57.938 39.130 0.00 0.00 36.74 3.21
2226 4228 9.073475 TGGTGTTTGTAGCAGTATTAAGAAATT 57.927 29.630 0.00 0.00 0.00 1.82
2387 4389 1.504275 GGCTCCATAGGGCCATCCAT 61.504 60.000 6.18 0.00 46.84 3.41
2525 4527 2.266554 CGTCTCTGGACTCAATCAAGC 58.733 52.381 0.00 0.00 40.10 4.01
2536 4538 3.201487 TCTTGGATAGTACCGTCTCTGGA 59.799 47.826 0.00 0.00 0.00 3.86
2763 5288 0.321564 TGCCCAAACCATCTCAGACG 60.322 55.000 0.00 0.00 0.00 4.18
2804 5329 2.590007 CCGCTATGCACTGGAGCC 60.590 66.667 0.00 0.00 32.35 4.70
2856 5448 1.979308 TGTCAAATTCGGTCTACCCCA 59.021 47.619 0.00 0.00 0.00 4.96
2879 5471 3.999285 AGGGCCACGGACTCCTCT 61.999 66.667 6.18 0.00 0.00 3.69
3245 6290 2.258591 GCTCGAGTGGCTGAACGA 59.741 61.111 15.13 0.00 0.00 3.85
3375 6429 5.836821 ATACTCACTTCACATCGCTCTTA 57.163 39.130 0.00 0.00 0.00 2.10
4032 7298 9.685828 GATAAGGATCAGTAGTTACATCTCAAC 57.314 37.037 0.00 0.00 31.78 3.18
4115 7381 8.359642 CCTGATAAAGAAATGAACAAGGACAAA 58.640 33.333 0.00 0.00 0.00 2.83
4657 7923 1.806542 ACCAGTGAGCAATAAAGCACG 59.193 47.619 0.00 0.00 36.43 5.34
4687 7953 4.301628 AGTGCTGCAAACTTTAAGAATGC 58.698 39.130 2.77 15.65 37.52 3.56
4897 8163 6.485984 CCCAGTCTTGAGAATTAATGGATGAG 59.514 42.308 0.00 0.00 0.00 2.90
4911 8177 6.176183 AGTTTCAATATGTCCCAGTCTTGAG 58.824 40.000 0.00 0.00 0.00 3.02
5028 8294 1.069823 TGCCCGTCAAATGTGCAAAAT 59.930 42.857 0.00 0.00 0.00 1.82
5049 8315 9.871238 GTTCCAGATAGTTACTAGAATGACAAA 57.129 33.333 0.00 0.00 0.00 2.83
5136 8402 3.802948 ATGATCCCACTGTCTTCGTAC 57.197 47.619 0.00 0.00 0.00 3.67
5330 8596 4.193240 ACCATTTGTACCCCAACTTCTT 57.807 40.909 0.00 0.00 31.20 2.52
5331 8597 3.895041 CAACCATTTGTACCCCAACTTCT 59.105 43.478 0.00 0.00 31.20 2.85
5332 8598 3.554129 GCAACCATTTGTACCCCAACTTC 60.554 47.826 0.00 0.00 34.90 3.01
5565 8831 2.820059 AGGCAAAGCTTACAAAAGGC 57.180 45.000 0.00 0.00 32.98 4.35
5590 8856 1.609208 AACAAGCTGGACGAAAGCAT 58.391 45.000 0.00 0.00 43.37 3.79
5694 8960 3.305110 GGACACGTTGGTTGCTTTATTG 58.695 45.455 0.00 0.00 0.00 1.90
5709 8975 8.571290 ACAATTGAACTTGTTGTACGGACACG 62.571 42.308 13.59 3.40 40.18 4.49
5878 9144 4.215399 GCTCTTTGTGGCAAACTACACATA 59.785 41.667 0.00 0.00 45.90 2.29
5879 9145 3.004734 GCTCTTTGTGGCAAACTACACAT 59.995 43.478 0.00 0.00 45.90 3.21
5880 9146 2.357637 GCTCTTTGTGGCAAACTACACA 59.642 45.455 0.00 0.00 45.06 3.72
5881 9147 2.357637 TGCTCTTTGTGGCAAACTACAC 59.642 45.455 0.00 0.00 35.40 2.90
5882 9148 2.649190 TGCTCTTTGTGGCAAACTACA 58.351 42.857 0.00 0.00 35.40 2.74
5883 9149 3.066760 ACTTGCTCTTTGTGGCAAACTAC 59.933 43.478 0.00 0.00 45.80 2.73
5884 9150 3.287222 ACTTGCTCTTTGTGGCAAACTA 58.713 40.909 0.00 0.00 45.80 2.24
5885 9151 2.102578 ACTTGCTCTTTGTGGCAAACT 58.897 42.857 0.00 0.00 45.80 2.66
5886 9152 2.584492 ACTTGCTCTTTGTGGCAAAC 57.416 45.000 0.00 0.00 45.80 2.93
5887 9153 3.260740 CAAACTTGCTCTTTGTGGCAAA 58.739 40.909 0.00 0.00 45.80 3.68
5888 9154 2.418471 CCAAACTTGCTCTTTGTGGCAA 60.418 45.455 0.00 0.00 44.64 4.52
5889 9155 1.136695 CCAAACTTGCTCTTTGTGGCA 59.863 47.619 0.00 0.00 36.62 4.92
5890 9156 1.408702 TCCAAACTTGCTCTTTGTGGC 59.591 47.619 0.00 0.00 0.00 5.01
5891 9157 3.799281 TTCCAAACTTGCTCTTTGTGG 57.201 42.857 0.00 0.00 0.00 4.17
5892 9158 4.747810 AGTTTCCAAACTTGCTCTTTGTG 58.252 39.130 0.00 0.00 46.52 3.33
5904 9170 3.146847 CAGTGGGGTAGAGTTTCCAAAC 58.853 50.000 0.00 0.00 39.17 2.93
5905 9171 2.781174 ACAGTGGGGTAGAGTTTCCAAA 59.219 45.455 0.00 0.00 0.00 3.28
5906 9172 2.414612 ACAGTGGGGTAGAGTTTCCAA 58.585 47.619 0.00 0.00 0.00 3.53
5907 9173 2.112279 ACAGTGGGGTAGAGTTTCCA 57.888 50.000 0.00 0.00 0.00 3.53
5908 9174 2.638363 AGAACAGTGGGGTAGAGTTTCC 59.362 50.000 0.00 0.00 0.00 3.13
5909 9175 4.040584 AGAAGAACAGTGGGGTAGAGTTTC 59.959 45.833 0.00 0.00 0.00 2.78
5910 9176 3.974642 AGAAGAACAGTGGGGTAGAGTTT 59.025 43.478 0.00 0.00 0.00 2.66
5911 9177 3.579151 GAGAAGAACAGTGGGGTAGAGTT 59.421 47.826 0.00 0.00 0.00 3.01
5912 9178 3.166679 GAGAAGAACAGTGGGGTAGAGT 58.833 50.000 0.00 0.00 0.00 3.24
5913 9179 3.436243 AGAGAAGAACAGTGGGGTAGAG 58.564 50.000 0.00 0.00 0.00 2.43
5914 9180 3.544698 AGAGAAGAACAGTGGGGTAGA 57.455 47.619 0.00 0.00 0.00 2.59
5915 9181 4.773149 ACTAAGAGAAGAACAGTGGGGTAG 59.227 45.833 0.00 0.00 0.00 3.18
5916 9182 4.527038 CACTAAGAGAAGAACAGTGGGGTA 59.473 45.833 0.00 0.00 34.35 3.69
5917 9183 3.325135 CACTAAGAGAAGAACAGTGGGGT 59.675 47.826 0.00 0.00 34.35 4.95
5918 9184 3.866449 GCACTAAGAGAAGAACAGTGGGG 60.866 52.174 0.00 0.00 37.63 4.96
5919 9185 3.007398 AGCACTAAGAGAAGAACAGTGGG 59.993 47.826 0.00 0.00 37.63 4.61
5920 9186 4.264460 AGCACTAAGAGAAGAACAGTGG 57.736 45.455 0.00 0.00 37.63 4.00
5921 9187 6.610741 AAAAGCACTAAGAGAAGAACAGTG 57.389 37.500 0.00 0.00 39.65 3.66
5953 9219 4.566907 GGAGTAAGTAATGGCTGGGAAACA 60.567 45.833 0.00 0.00 0.00 2.83
5954 9220 3.945921 GGAGTAAGTAATGGCTGGGAAAC 59.054 47.826 0.00 0.00 0.00 2.78
5955 9221 3.053917 GGGAGTAAGTAATGGCTGGGAAA 60.054 47.826 0.00 0.00 0.00 3.13
5956 9222 2.508300 GGGAGTAAGTAATGGCTGGGAA 59.492 50.000 0.00 0.00 0.00 3.97
5957 9223 2.124411 GGGAGTAAGTAATGGCTGGGA 58.876 52.381 0.00 0.00 0.00 4.37
5958 9224 2.127708 AGGGAGTAAGTAATGGCTGGG 58.872 52.381 0.00 0.00 0.00 4.45
5959 9225 3.741388 CGAAGGGAGTAAGTAATGGCTGG 60.741 52.174 0.00 0.00 0.00 4.85
5960 9226 3.118738 ACGAAGGGAGTAAGTAATGGCTG 60.119 47.826 0.00 0.00 0.00 4.85
5961 9227 3.105283 ACGAAGGGAGTAAGTAATGGCT 58.895 45.455 0.00 0.00 0.00 4.75
5962 9228 3.538634 ACGAAGGGAGTAAGTAATGGC 57.461 47.619 0.00 0.00 0.00 4.40
5963 9229 6.812879 AAAAACGAAGGGAGTAAGTAATGG 57.187 37.500 0.00 0.00 0.00 3.16
5966 9232 9.341078 ACATTTAAAAACGAAGGGAGTAAGTAA 57.659 29.630 0.00 0.00 0.00 2.24
5967 9233 8.907222 ACATTTAAAAACGAAGGGAGTAAGTA 57.093 30.769 0.00 0.00 0.00 2.24
5968 9234 7.718314 AGACATTTAAAAACGAAGGGAGTAAGT 59.282 33.333 0.00 0.00 0.00 2.24
5969 9235 8.095937 AGACATTTAAAAACGAAGGGAGTAAG 57.904 34.615 0.00 0.00 0.00 2.34
5970 9236 8.454570 AAGACATTTAAAAACGAAGGGAGTAA 57.545 30.769 0.00 0.00 0.00 2.24
5971 9237 7.935210 AGAAGACATTTAAAAACGAAGGGAGTA 59.065 33.333 0.00 0.00 0.00 2.59
5972 9238 6.771267 AGAAGACATTTAAAAACGAAGGGAGT 59.229 34.615 0.00 0.00 0.00 3.85
5973 9239 7.203255 AGAAGACATTTAAAAACGAAGGGAG 57.797 36.000 0.00 0.00 0.00 4.30
5974 9240 7.422399 CAAGAAGACATTTAAAAACGAAGGGA 58.578 34.615 0.00 0.00 0.00 4.20
5975 9241 6.640907 CCAAGAAGACATTTAAAAACGAAGGG 59.359 38.462 0.00 0.00 0.00 3.95
5976 9242 7.422399 TCCAAGAAGACATTTAAAAACGAAGG 58.578 34.615 0.00 0.00 0.00 3.46
5977 9243 8.342634 TCTCCAAGAAGACATTTAAAAACGAAG 58.657 33.333 0.00 0.00 0.00 3.79
5978 9244 8.215926 TCTCCAAGAAGACATTTAAAAACGAA 57.784 30.769 0.00 0.00 0.00 3.85
5979 9245 7.795482 TCTCCAAGAAGACATTTAAAAACGA 57.205 32.000 0.00 0.00 0.00 3.85
5980 9246 9.463443 AAATCTCCAAGAAGACATTTAAAAACG 57.537 29.630 0.00 0.00 0.00 3.60
5983 9249 9.965824 GTGAAATCTCCAAGAAGACATTTAAAA 57.034 29.630 0.00 0.00 0.00 1.52
5984 9250 9.354673 AGTGAAATCTCCAAGAAGACATTTAAA 57.645 29.630 0.00 0.00 0.00 1.52
5985 9251 8.924511 AGTGAAATCTCCAAGAAGACATTTAA 57.075 30.769 0.00 0.00 0.00 1.52
5988 9254 9.829507 CTATAGTGAAATCTCCAAGAAGACATT 57.170 33.333 0.00 0.00 0.00 2.71
5989 9255 9.206690 TCTATAGTGAAATCTCCAAGAAGACAT 57.793 33.333 0.00 0.00 0.00 3.06
5990 9256 8.470805 GTCTATAGTGAAATCTCCAAGAAGACA 58.529 37.037 0.00 0.00 0.00 3.41
5991 9257 8.691797 AGTCTATAGTGAAATCTCCAAGAAGAC 58.308 37.037 0.00 0.00 0.00 3.01
5992 9258 8.830915 AGTCTATAGTGAAATCTCCAAGAAGA 57.169 34.615 0.00 0.00 0.00 2.87
5993 9259 9.959749 GTAGTCTATAGTGAAATCTCCAAGAAG 57.040 37.037 0.00 0.00 0.00 2.85
5994 9260 9.475620 TGTAGTCTATAGTGAAATCTCCAAGAA 57.524 33.333 0.00 0.00 0.00 2.52
5995 9261 9.647918 ATGTAGTCTATAGTGAAATCTCCAAGA 57.352 33.333 0.00 0.00 0.00 3.02
6004 9270 9.601810 ACATCCCATATGTAGTCTATAGTGAAA 57.398 33.333 1.24 0.00 0.00 2.69
6013 9279 9.715119 TTGCTATATACATCCCATATGTAGTCT 57.285 33.333 1.24 0.00 37.84 3.24
6034 9300 9.959721 AACACCTTTCTCTCTAAAATATTGCTA 57.040 29.630 0.00 0.00 0.00 3.49
6035 9301 8.870075 AACACCTTTCTCTCTAAAATATTGCT 57.130 30.769 0.00 0.00 0.00 3.91
6036 9302 9.914131 AAAACACCTTTCTCTCTAAAATATTGC 57.086 29.630 0.00 0.00 0.00 3.56
6039 9305 9.807921 TCCAAAACACCTTTCTCTCTAAAATAT 57.192 29.630 0.00 0.00 0.00 1.28
6040 9306 9.284968 CTCCAAAACACCTTTCTCTCTAAAATA 57.715 33.333 0.00 0.00 0.00 1.40
6041 9307 7.231519 CCTCCAAAACACCTTTCTCTCTAAAAT 59.768 37.037 0.00 0.00 0.00 1.82
6042 9308 6.546034 CCTCCAAAACACCTTTCTCTCTAAAA 59.454 38.462 0.00 0.00 0.00 1.52
6043 9309 6.062095 CCTCCAAAACACCTTTCTCTCTAAA 58.938 40.000 0.00 0.00 0.00 1.85
6044 9310 5.621193 CCTCCAAAACACCTTTCTCTCTAA 58.379 41.667 0.00 0.00 0.00 2.10
6045 9311 4.505039 GCCTCCAAAACACCTTTCTCTCTA 60.505 45.833 0.00 0.00 0.00 2.43
6046 9312 3.748989 GCCTCCAAAACACCTTTCTCTCT 60.749 47.826 0.00 0.00 0.00 3.10
6047 9313 2.554462 GCCTCCAAAACACCTTTCTCTC 59.446 50.000 0.00 0.00 0.00 3.20
6048 9314 2.091885 TGCCTCCAAAACACCTTTCTCT 60.092 45.455 0.00 0.00 0.00 3.10
6049 9315 2.294512 CTGCCTCCAAAACACCTTTCTC 59.705 50.000 0.00 0.00 0.00 2.87
6050 9316 2.091885 TCTGCCTCCAAAACACCTTTCT 60.092 45.455 0.00 0.00 0.00 2.52
6051 9317 2.294512 CTCTGCCTCCAAAACACCTTTC 59.705 50.000 0.00 0.00 0.00 2.62
6052 9318 2.310538 CTCTGCCTCCAAAACACCTTT 58.689 47.619 0.00 0.00 0.00 3.11
6053 9319 1.986882 CTCTGCCTCCAAAACACCTT 58.013 50.000 0.00 0.00 0.00 3.50
6054 9320 0.538287 GCTCTGCCTCCAAAACACCT 60.538 55.000 0.00 0.00 0.00 4.00
6055 9321 0.538287 AGCTCTGCCTCCAAAACACC 60.538 55.000 0.00 0.00 0.00 4.16
6056 9322 0.877743 GAGCTCTGCCTCCAAAACAC 59.122 55.000 6.43 0.00 0.00 3.32
6057 9323 3.329300 GAGCTCTGCCTCCAAAACA 57.671 52.632 6.43 0.00 0.00 2.83
6064 9330 1.446791 CTCCATGGAGCTCTGCCTC 59.553 63.158 28.45 0.00 35.31 4.70
6065 9331 2.071262 CCTCCATGGAGCTCTGCCT 61.071 63.158 32.97 0.00 40.69 4.75
6066 9332 2.509916 CCTCCATGGAGCTCTGCC 59.490 66.667 32.97 0.00 40.69 4.85
6067 9333 2.203181 GCCTCCATGGAGCTCTGC 60.203 66.667 32.97 26.23 40.69 4.26
6068 9334 1.633915 AAGGCCTCCATGGAGCTCTG 61.634 60.000 32.97 21.23 40.69 3.35
6069 9335 0.918310 AAAGGCCTCCATGGAGCTCT 60.918 55.000 32.97 26.77 40.69 4.09
6070 9336 0.839946 TAAAGGCCTCCATGGAGCTC 59.160 55.000 32.97 25.21 40.69 4.09
6071 9337 1.527457 ATAAAGGCCTCCATGGAGCT 58.473 50.000 32.97 23.24 40.69 4.09
6072 9338 2.371658 AATAAAGGCCTCCATGGAGC 57.628 50.000 32.97 26.44 40.69 4.70
6073 9339 6.790232 TTAAAAATAAAGGCCTCCATGGAG 57.210 37.500 31.69 31.69 41.63 3.86
6074 9340 7.560796 TTTTAAAAATAAAGGCCTCCATGGA 57.439 32.000 15.27 15.27 38.35 3.41
6075 9341 7.882791 ACTTTTTAAAAATAAAGGCCTCCATGG 59.117 33.333 5.23 4.97 36.04 3.66
6076 9342 8.846943 ACTTTTTAAAAATAAAGGCCTCCATG 57.153 30.769 5.23 0.47 36.04 3.66
6077 9343 9.502091 GAACTTTTTAAAAATAAAGGCCTCCAT 57.498 29.630 5.23 0.00 36.04 3.41
6078 9344 8.487028 TGAACTTTTTAAAAATAAAGGCCTCCA 58.513 29.630 5.23 0.00 36.04 3.86
6079 9345 8.896320 TGAACTTTTTAAAAATAAAGGCCTCC 57.104 30.769 5.23 0.00 36.04 4.30
6080 9346 8.988934 CCTGAACTTTTTAAAAATAAAGGCCTC 58.011 33.333 5.23 4.03 36.04 4.70
6081 9347 8.491134 ACCTGAACTTTTTAAAAATAAAGGCCT 58.509 29.630 20.65 0.00 36.04 5.19
6082 9348 8.671384 ACCTGAACTTTTTAAAAATAAAGGCC 57.329 30.769 20.65 0.00 36.04 5.19
6137 9403 8.579850 ACATCCTGACATACACACATATTTTT 57.420 30.769 0.00 0.00 0.00 1.94
6138 9404 9.679661 TTACATCCTGACATACACACATATTTT 57.320 29.630 0.00 0.00 0.00 1.82
6139 9405 9.109393 GTTACATCCTGACATACACACATATTT 57.891 33.333 0.00 0.00 0.00 1.40
6140 9406 8.486210 AGTTACATCCTGACATACACACATATT 58.514 33.333 0.00 0.00 0.00 1.28
6142 9408 7.123547 TGAGTTACATCCTGACATACACACATA 59.876 37.037 0.00 0.00 0.00 2.29
6143 9409 6.070824 TGAGTTACATCCTGACATACACACAT 60.071 38.462 0.00 0.00 0.00 3.21
6144 9410 5.245075 TGAGTTACATCCTGACATACACACA 59.755 40.000 0.00 0.00 0.00 3.72
6145 9411 5.577164 GTGAGTTACATCCTGACATACACAC 59.423 44.000 0.00 0.00 0.00 3.82
6146 9412 5.245075 TGTGAGTTACATCCTGACATACACA 59.755 40.000 0.00 0.00 33.42 3.72
6147 9413 5.720202 TGTGAGTTACATCCTGACATACAC 58.280 41.667 0.00 0.00 33.42 2.90
6148 9414 5.993748 TGTGAGTTACATCCTGACATACA 57.006 39.130 0.00 0.00 33.42 2.29
6167 9433 7.808856 TTCATGATGAATTTGTACACACATGTG 59.191 33.333 24.25 24.25 40.52 3.21
6168 9434 7.451501 TCATGATGAATTTGTACACACATGT 57.548 32.000 16.74 0.00 43.30 3.21
6169 9435 8.745464 TTTCATGATGAATTTGTACACACATG 57.255 30.769 8.90 7.52 36.11 3.21
6171 9437 9.838975 GTATTTCATGATGAATTTGTACACACA 57.161 29.630 8.90 0.00 36.11 3.72
6172 9438 9.289303 GGTATTTCATGATGAATTTGTACACAC 57.711 33.333 8.90 0.00 36.11 3.82
6178 9444 9.028284 ACTCAAGGTATTTCATGATGAATTTGT 57.972 29.630 8.90 0.00 36.11 2.83
6179 9445 9.865321 AACTCAAGGTATTTCATGATGAATTTG 57.135 29.630 8.90 8.93 36.11 2.32
6183 9449 9.904198 TCATAACTCAAGGTATTTCATGATGAA 57.096 29.630 3.29 3.29 34.03 2.57
6184 9450 9.330063 GTCATAACTCAAGGTATTTCATGATGA 57.670 33.333 0.00 0.00 0.00 2.92
6185 9451 8.562892 GGTCATAACTCAAGGTATTTCATGATG 58.437 37.037 0.00 0.00 0.00 3.07
6187 9453 7.770433 CAGGTCATAACTCAAGGTATTTCATGA 59.230 37.037 0.00 0.00 0.00 3.07
6190 9456 7.016153 ACAGGTCATAACTCAAGGTATTTCA 57.984 36.000 0.00 0.00 0.00 2.69
6191 9457 8.038944 TGTACAGGTCATAACTCAAGGTATTTC 58.961 37.037 0.00 0.00 0.00 2.17
6195 9461 6.921486 TTGTACAGGTCATAACTCAAGGTA 57.079 37.500 0.00 0.00 0.00 3.08
6196 9462 5.818678 TTGTACAGGTCATAACTCAAGGT 57.181 39.130 0.00 0.00 0.00 3.50
6197 9463 7.504924 TTTTTGTACAGGTCATAACTCAAGG 57.495 36.000 0.00 0.00 0.00 3.61
6220 9486 8.137745 TCTTCTCAGGCCATGAATTTATTTTT 57.862 30.769 5.01 0.00 37.52 1.94
6221 9487 7.722949 TCTTCTCAGGCCATGAATTTATTTT 57.277 32.000 5.01 0.00 37.52 1.82
6222 9488 7.562454 TCATCTTCTCAGGCCATGAATTTATTT 59.438 33.333 5.01 0.00 37.52 1.40
6223 9489 7.064866 TCATCTTCTCAGGCCATGAATTTATT 58.935 34.615 5.01 0.00 37.52 1.40
6224 9490 6.607970 TCATCTTCTCAGGCCATGAATTTAT 58.392 36.000 5.01 0.00 37.52 1.40
6225 9491 6.005066 TCATCTTCTCAGGCCATGAATTTA 57.995 37.500 5.01 0.00 37.52 1.40
6226 9492 4.863548 TCATCTTCTCAGGCCATGAATTT 58.136 39.130 5.01 0.00 37.52 1.82
6227 9493 4.515028 TCATCTTCTCAGGCCATGAATT 57.485 40.909 5.01 0.00 37.52 2.17
6228 9494 4.515028 TTCATCTTCTCAGGCCATGAAT 57.485 40.909 5.01 0.00 37.52 2.57
6229 9495 4.515028 ATTCATCTTCTCAGGCCATGAA 57.485 40.909 13.08 13.08 37.52 2.57
6230 9496 4.657504 ACTATTCATCTTCTCAGGCCATGA 59.342 41.667 5.01 5.02 36.21 3.07
6231 9497 4.970711 ACTATTCATCTTCTCAGGCCATG 58.029 43.478 5.01 0.00 0.00 3.66
6232 9498 6.499699 TGATACTATTCATCTTCTCAGGCCAT 59.500 38.462 5.01 0.00 0.00 4.40
6233 9499 5.840693 TGATACTATTCATCTTCTCAGGCCA 59.159 40.000 5.01 0.00 0.00 5.36
6234 9500 6.352016 TGATACTATTCATCTTCTCAGGCC 57.648 41.667 0.00 0.00 0.00 5.19
6235 9501 7.331440 CACATGATACTATTCATCTTCTCAGGC 59.669 40.741 0.00 0.00 34.09 4.85
6236 9502 8.366401 ACACATGATACTATTCATCTTCTCAGG 58.634 37.037 0.00 0.00 34.09 3.86
6237 9503 9.761504 AACACATGATACTATTCATCTTCTCAG 57.238 33.333 0.00 0.00 34.09 3.35
6245 9511 9.712305 GGCTACTTAACACATGATACTATTCAT 57.288 33.333 0.00 0.00 36.79 2.57
6246 9512 8.924303 AGGCTACTTAACACATGATACTATTCA 58.076 33.333 0.00 0.00 0.00 2.57
6247 9513 9.413048 GAGGCTACTTAACACATGATACTATTC 57.587 37.037 0.00 0.00 0.00 1.75
6248 9514 8.924303 TGAGGCTACTTAACACATGATACTATT 58.076 33.333 0.00 0.00 0.00 1.73
6249 9515 8.478775 TGAGGCTACTTAACACATGATACTAT 57.521 34.615 0.00 0.00 0.00 2.12
6250 9516 7.778382 TCTGAGGCTACTTAACACATGATACTA 59.222 37.037 0.00 0.00 0.00 1.82
6251 9517 6.607600 TCTGAGGCTACTTAACACATGATACT 59.392 38.462 0.00 0.00 0.00 2.12
6252 9518 6.806751 TCTGAGGCTACTTAACACATGATAC 58.193 40.000 0.00 0.00 0.00 2.24
6253 9519 7.603180 ATCTGAGGCTACTTAACACATGATA 57.397 36.000 0.00 0.00 0.00 2.15
6254 9520 5.939764 TCTGAGGCTACTTAACACATGAT 57.060 39.130 0.00 0.00 0.00 2.45
6255 9521 5.939764 ATCTGAGGCTACTTAACACATGA 57.060 39.130 0.00 0.00 0.00 3.07
6256 9522 6.372659 ACAAATCTGAGGCTACTTAACACATG 59.627 38.462 0.00 0.00 0.00 3.21
6257 9523 6.476378 ACAAATCTGAGGCTACTTAACACAT 58.524 36.000 0.00 0.00 0.00 3.21
6258 9524 5.865085 ACAAATCTGAGGCTACTTAACACA 58.135 37.500 0.00 0.00 0.00 3.72
6259 9525 6.166982 AGACAAATCTGAGGCTACTTAACAC 58.833 40.000 0.00 0.00 32.29 3.32
6260 9526 6.360370 AGACAAATCTGAGGCTACTTAACA 57.640 37.500 0.00 0.00 32.29 2.41
6261 9527 7.674471 AAAGACAAATCTGAGGCTACTTAAC 57.326 36.000 0.00 0.00 34.48 2.01
6262 9528 8.691661 AAAAAGACAAATCTGAGGCTACTTAA 57.308 30.769 0.00 0.00 34.48 1.85
6284 9550 3.429492 TGATATGAGGGCTGTGCAAAAA 58.571 40.909 0.00 0.00 0.00 1.94
6285 9551 3.084536 TGATATGAGGGCTGTGCAAAA 57.915 42.857 0.00 0.00 0.00 2.44
6286 9552 2.804986 TGATATGAGGGCTGTGCAAA 57.195 45.000 0.00 0.00 0.00 3.68
6287 9553 2.804986 TTGATATGAGGGCTGTGCAA 57.195 45.000 0.00 0.00 0.00 4.08
6288 9554 2.092267 ACATTGATATGAGGGCTGTGCA 60.092 45.455 0.00 0.00 35.65 4.57
6289 9555 2.579873 ACATTGATATGAGGGCTGTGC 58.420 47.619 0.00 0.00 35.65 4.57
6290 9556 6.889301 AAATACATTGATATGAGGGCTGTG 57.111 37.500 0.00 0.00 35.65 3.66
6291 9557 7.062322 TCAAAATACATTGATATGAGGGCTGT 58.938 34.615 0.00 0.00 34.50 4.40
6292 9558 7.514784 TCAAAATACATTGATATGAGGGCTG 57.485 36.000 0.00 0.00 34.50 4.85
6293 9559 7.781693 AGTTCAAAATACATTGATATGAGGGCT 59.218 33.333 0.00 0.00 38.98 5.19
6294 9560 7.864379 CAGTTCAAAATACATTGATATGAGGGC 59.136 37.037 0.00 0.00 38.98 5.19
6295 9561 9.123902 TCAGTTCAAAATACATTGATATGAGGG 57.876 33.333 0.00 0.00 38.98 4.30
6311 9577 9.429359 ACATGTGTGTAAATTTTCAGTTCAAAA 57.571 25.926 0.00 0.00 36.63 2.44
6312 9578 8.867935 CACATGTGTGTAAATTTTCAGTTCAAA 58.132 29.630 18.03 0.00 40.96 2.69
6313 9579 8.404889 CACATGTGTGTAAATTTTCAGTTCAA 57.595 30.769 18.03 0.00 40.96 2.69
6314 9580 7.984002 CACATGTGTGTAAATTTTCAGTTCA 57.016 32.000 18.03 0.00 40.96 3.18
6329 9595 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
6330 9596 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
6331 9597 4.082625 ACATGAAGGCATAACACACATGTG 60.083 41.667 24.25 24.25 42.90 3.21
6332 9598 4.081406 ACATGAAGGCATAACACACATGT 58.919 39.130 0.00 0.00 40.84 3.21
6333 9599 4.707030 ACATGAAGGCATAACACACATG 57.293 40.909 0.00 0.00 39.27 3.21
6334 9600 8.159447 AGATATACATGAAGGCATAACACACAT 58.841 33.333 0.00 0.00 32.27 3.21
6335 9601 7.442062 CAGATATACATGAAGGCATAACACACA 59.558 37.037 0.00 0.00 32.27 3.72
6336 9602 7.800767 CAGATATACATGAAGGCATAACACAC 58.199 38.462 0.00 0.00 32.27 3.82
6337 9603 7.967890 CAGATATACATGAAGGCATAACACA 57.032 36.000 0.00 0.00 32.27 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.