Multiple sequence alignment - TraesCS5B01G146200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G146200 chr5B 100.000 7756 0 0 1 7756 273729666 273721911 0.000000e+00 14323
1 TraesCS5B01G146200 chr5A 95.387 6569 239 39 1 6529 325386547 325380003 0.000000e+00 10394
2 TraesCS5B01G146200 chr5A 90.617 1247 49 22 6527 7756 325379943 325378748 0.000000e+00 1592
3 TraesCS5B01G146200 chr5D 95.445 5598 156 42 2197 7756 231736904 231742440 0.000000e+00 8833
4 TraesCS5B01G146200 chr5D 93.652 2237 88 30 1 2195 231734550 231736774 0.000000e+00 3295
5 TraesCS5B01G146200 chr4A 82.337 736 105 19 3405 4133 476748780 476749497 3.980000e-172 616
6 TraesCS5B01G146200 chr4A 86.735 196 25 1 2333 2527 476747610 476747805 4.710000e-52 217
7 TraesCS5B01G146200 chr4D 81.682 737 114 15 3405 4136 99662379 99661659 1.860000e-165 593
8 TraesCS5B01G146200 chr4D 79.091 330 53 12 2204 2527 99663615 99663296 6.100000e-51 213
9 TraesCS5B01G146200 chr4B 81.732 739 110 19 3405 4136 142056346 142055626 1.860000e-165 593
10 TraesCS5B01G146200 chr4B 85.714 196 27 1 2333 2527 142057786 142057591 1.020000e-48 206


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G146200 chr5B 273721911 273729666 7755 True 14323.0 14323 100.0000 1 7756 1 chr5B.!!$R1 7755
1 TraesCS5B01G146200 chr5A 325378748 325386547 7799 True 5993.0 10394 93.0020 1 7756 2 chr5A.!!$R1 7755
2 TraesCS5B01G146200 chr5D 231734550 231742440 7890 False 6064.0 8833 94.5485 1 7756 2 chr5D.!!$F1 7755
3 TraesCS5B01G146200 chr4A 476747610 476749497 1887 False 416.5 616 84.5360 2333 4133 2 chr4A.!!$F1 1800
4 TraesCS5B01G146200 chr4D 99661659 99663615 1956 True 403.0 593 80.3865 2204 4136 2 chr4D.!!$R1 1932
5 TraesCS5B01G146200 chr4B 142055626 142057786 2160 True 399.5 593 83.7230 2333 4136 2 chr4B.!!$R1 1803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 537 0.107703 CGACATAGGGCAAGGCTTCA 60.108 55.000 0.00 0.00 0.00 3.02 F
656 701 0.179097 GGACATCGTGAGGGAAGAGC 60.179 60.000 0.00 0.00 0.00 4.09 F
659 704 0.820226 CATCGTGAGGGAAGAGCTCA 59.180 55.000 17.77 0.00 0.00 4.26 F
661 706 0.891373 TCGTGAGGGAAGAGCTCAAG 59.109 55.000 17.77 0.00 0.00 3.02 F
662 707 0.891373 CGTGAGGGAAGAGCTCAAGA 59.109 55.000 17.77 0.00 0.00 3.02 F
2163 2211 0.320683 TGTCACTTCTGGACATGGCG 60.321 55.000 0.00 0.00 40.16 5.69 F
3033 3461 1.377612 GTTCCCGGGCCTAACTTGT 59.622 57.895 18.49 0.00 0.00 3.16 F
3939 5017 0.595095 CTTTCCTTGCACAGCTGACC 59.405 55.000 23.35 11.05 0.00 4.02 F
4459 5539 0.736325 CCATCGACGTTTTCCGAGCT 60.736 55.000 3.45 0.00 40.70 4.09 F
5520 6603 0.178903 AGCAGTCACCTACTTCCCCA 60.179 55.000 0.00 0.00 35.76 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1597 0.807667 GCTAGCACGATCACACTGGG 60.808 60.000 10.63 0.00 0.00 4.45 R
2070 2118 3.834231 AGCATACCAAGAAAACTGCCATT 59.166 39.130 0.00 0.00 0.00 3.16 R
2157 2205 4.701956 ATGGTTTTTCTCTAACGCCATG 57.298 40.909 0.00 0.00 32.44 3.66 R
2163 2211 6.014647 AGGGGGTTTATGGTTTTTCTCTAAC 58.985 40.000 0.00 0.00 0.00 2.34 R
2311 2491 8.556213 AGTTTGAAAAAGGGAAAAAGGTTAAC 57.444 30.769 0.00 0.00 0.00 2.01 R
3935 5013 1.294041 TATGAATGCCTGGTGGGTCA 58.706 50.000 0.00 0.00 37.43 4.02 R
4440 5520 0.736325 AGCTCGGAAAACGTCGATGG 60.736 55.000 9.90 0.00 44.69 3.51 R
5214 6294 0.250901 AGATTGTCAGTGGTGGCACC 60.251 55.000 29.75 29.75 38.28 5.01 R
6239 7322 1.205893 AGAGTTCGATCTCAGGGTTGC 59.794 52.381 22.22 0.00 36.97 4.17 R
6943 8090 0.179015 TTCGGTTACTGCAGGGCAAA 60.179 50.000 19.93 3.81 38.41 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 2.308866 CGGCCTATAAAGGGGAATGGAT 59.691 50.000 0.00 0.00 43.87 3.41
31 33 5.572475 GCCTATAAAGGGGAATGGATGAGAG 60.572 48.000 0.00 0.00 43.87 3.20
34 36 0.649992 AGGGGAATGGATGAGAGGGA 59.350 55.000 0.00 0.00 0.00 4.20
117 121 1.333619 TGTGCTCTTTTCTTCGTTGCC 59.666 47.619 0.00 0.00 0.00 4.52
131 135 3.557903 TTGCCCTGCTGCTCAGTCC 62.558 63.158 0.00 0.00 41.25 3.85
143 147 0.526662 CTCAGTCCCACCACTACGAC 59.473 60.000 0.00 0.00 0.00 4.34
166 171 1.065854 ACTCACCTTGGCTAGCATGAC 60.066 52.381 18.24 0.00 0.00 3.06
228 233 4.832248 TCTTCGTTGCATCTACTTCCATT 58.168 39.130 0.00 0.00 0.00 3.16
240 245 2.558554 CTTCCATTCGGTCGCGAGGT 62.559 60.000 10.24 0.00 0.00 3.85
251 256 2.962253 GCGAGGTATGTGAGCGGC 60.962 66.667 0.00 0.00 0.00 6.53
262 267 1.828595 TGTGAGCGGCTACCTATTTCA 59.171 47.619 0.60 0.00 0.00 2.69
274 279 5.583457 GCTACCTATTTCACGCCTTCTTTTA 59.417 40.000 0.00 0.00 0.00 1.52
323 353 7.196637 ACTTTTATAAGACCCGATTTCTCCT 57.803 36.000 0.00 0.00 35.30 3.69
325 355 7.125963 ACTTTTATAAGACCCGATTTCTCCTCT 59.874 37.037 0.00 0.00 35.30 3.69
327 357 2.838637 AGACCCGATTTCTCCTCTCT 57.161 50.000 0.00 0.00 0.00 3.10
379 411 2.297912 CGTGTGTCGTCGGTTCCAC 61.298 63.158 0.00 0.00 34.52 4.02
411 443 2.852449 TCCTTTATTCATCCACCTGCCT 59.148 45.455 0.00 0.00 0.00 4.75
413 445 3.633986 CCTTTATTCATCCACCTGCCTTC 59.366 47.826 0.00 0.00 0.00 3.46
414 446 3.297134 TTATTCATCCACCTGCCTTCC 57.703 47.619 0.00 0.00 0.00 3.46
415 447 1.302907 ATTCATCCACCTGCCTTCCT 58.697 50.000 0.00 0.00 0.00 3.36
504 537 0.107703 CGACATAGGGCAAGGCTTCA 60.108 55.000 0.00 0.00 0.00 3.02
534 567 2.479566 AGATTTGAAAGAGCGAGGCA 57.520 45.000 0.00 0.00 0.00 4.75
535 568 2.783135 AGATTTGAAAGAGCGAGGCAA 58.217 42.857 0.00 0.00 0.00 4.52
550 583 1.962306 GCAACGGTTCGTGCCCTTA 60.962 57.895 0.00 0.00 39.99 2.69
551 584 1.508808 GCAACGGTTCGTGCCCTTAA 61.509 55.000 0.00 0.00 39.99 1.85
628 664 1.518903 GCTCAAAGCACACTCACCCC 61.519 60.000 0.00 0.00 41.89 4.95
631 667 1.110442 CAAAGCACACTCACCCCAAA 58.890 50.000 0.00 0.00 0.00 3.28
656 701 0.179097 GGACATCGTGAGGGAAGAGC 60.179 60.000 0.00 0.00 0.00 4.09
658 703 0.820871 ACATCGTGAGGGAAGAGCTC 59.179 55.000 5.27 5.27 0.00 4.09
659 704 0.820226 CATCGTGAGGGAAGAGCTCA 59.180 55.000 17.77 0.00 0.00 4.26
660 705 1.205655 CATCGTGAGGGAAGAGCTCAA 59.794 52.381 17.77 0.00 0.00 3.02
661 706 0.891373 TCGTGAGGGAAGAGCTCAAG 59.109 55.000 17.77 0.00 0.00 3.02
662 707 0.891373 CGTGAGGGAAGAGCTCAAGA 59.109 55.000 17.77 0.00 0.00 3.02
663 708 1.135141 CGTGAGGGAAGAGCTCAAGAG 60.135 57.143 17.77 0.00 0.00 2.85
664 709 1.206849 GTGAGGGAAGAGCTCAAGAGG 59.793 57.143 17.77 0.00 0.00 3.69
665 710 1.203237 TGAGGGAAGAGCTCAAGAGGT 60.203 52.381 17.77 0.74 42.58 3.85
666 711 1.206849 GAGGGAAGAGCTCAAGAGGTG 59.793 57.143 17.77 0.00 39.57 4.00
667 712 0.980423 GGGAAGAGCTCAAGAGGTGT 59.020 55.000 17.77 0.00 39.57 4.16
668 713 1.338579 GGGAAGAGCTCAAGAGGTGTG 60.339 57.143 17.77 0.00 39.57 3.82
669 714 1.620819 GGAAGAGCTCAAGAGGTGTGA 59.379 52.381 17.77 0.00 39.57 3.58
670 715 2.353605 GGAAGAGCTCAAGAGGTGTGAG 60.354 54.545 17.77 0.00 44.48 3.51
682 727 1.610673 GTGTGAGGAGGAGGCAGGA 60.611 63.158 0.00 0.00 0.00 3.86
777 822 1.761271 CTCTACCCCGGTTCTCCCC 60.761 68.421 0.00 0.00 0.00 4.81
890 935 3.330720 CGGGGCTGTCCTTCCCTT 61.331 66.667 0.00 0.00 42.25 3.95
919 964 3.441290 CGGTTCTCCCTCGTCGCT 61.441 66.667 0.00 0.00 0.00 4.93
1077 1122 2.609921 AACCCGAACCCCTCCTCC 60.610 66.667 0.00 0.00 0.00 4.30
1185 1230 2.202703 GCGGCCGTTGTCGACTAT 60.203 61.111 28.70 0.00 43.95 2.12
1306 1351 3.601586 CGTTGCACGACAAACTCTACAAG 60.602 47.826 3.04 0.00 46.05 3.16
1544 1590 5.562113 GCTTGCAGTTTCGTTTTAGGTGTAT 60.562 40.000 0.00 0.00 0.00 2.29
1551 1597 3.602483 TCGTTTTAGGTGTATTCTGGCC 58.398 45.455 0.00 0.00 0.00 5.36
1640 1687 6.691508 TCCTGACATTATTCATATGTCGAGG 58.308 40.000 18.23 18.23 45.47 4.63
1690 1737 2.202932 GTCGGGCATGCACTCGAT 60.203 61.111 24.84 0.00 34.13 3.59
1710 1757 5.471116 TCGATTTCCCTCATCATATTGCTTG 59.529 40.000 0.00 0.00 0.00 4.01
1742 1789 1.995484 ACGACAAGTGCAGATTGATCG 59.005 47.619 21.39 21.39 37.29 3.69
1826 1873 4.508124 CCTCCATATCTTGTTCGTGTTAGC 59.492 45.833 0.00 0.00 0.00 3.09
1870 1917 7.513856 TGCCCTTATCTTACTATATTTGTGCA 58.486 34.615 0.00 0.00 0.00 4.57
2070 2118 5.945191 TCTGCATGGAAATCAGTGAAATGTA 59.055 36.000 0.00 0.00 0.00 2.29
2077 2125 6.038356 GGAAATCAGTGAAATGTAATGGCAG 58.962 40.000 0.00 0.00 0.00 4.85
2081 2129 6.403866 TCAGTGAAATGTAATGGCAGTTTT 57.596 33.333 0.00 0.00 0.00 2.43
2111 2159 5.469373 TGCTCAATATGCTTTACACTTCG 57.531 39.130 0.00 0.00 0.00 3.79
2157 2205 9.654663 AAAGTAATAATACTGTCACTTCTGGAC 57.345 33.333 0.00 0.00 41.57 4.02
2163 2211 0.320683 TGTCACTTCTGGACATGGCG 60.321 55.000 0.00 0.00 40.16 5.69
2179 2227 5.250200 ACATGGCGTTAGAGAAAAACCATA 58.750 37.500 0.00 0.00 34.68 2.74
2182 2230 6.004408 TGGCGTTAGAGAAAAACCATAAAC 57.996 37.500 0.00 0.00 0.00 2.01
2183 2231 5.048573 TGGCGTTAGAGAAAAACCATAAACC 60.049 40.000 0.00 0.00 0.00 3.27
2185 2233 5.620654 GCGTTAGAGAAAAACCATAAACCCC 60.621 44.000 0.00 0.00 0.00 4.95
2260 2440 7.334421 TGCTTTTATTCCTGTACTGAGATTGAC 59.666 37.037 0.60 0.00 0.00 3.18
2261 2441 7.201652 GCTTTTATTCCTGTACTGAGATTGACC 60.202 40.741 0.60 0.00 0.00 4.02
2303 2483 8.300286 TCTTGAATAATTCGACAGCCTATAGAG 58.700 37.037 0.00 0.00 0.00 2.43
2311 2491 4.579340 TCGACAGCCTATAGAGGTACAAAG 59.421 45.833 5.08 0.00 45.78 2.77
2336 2517 8.380099 AGTTAACCTTTTTCCCTTTTTCAAACT 58.620 29.630 0.88 0.00 0.00 2.66
2669 2864 7.537596 TGACATTCCTGTGATTTAACCAAAT 57.462 32.000 0.00 0.00 34.74 2.32
2989 3405 6.491062 TGCATGCTTTATTCATACTATTGGCT 59.509 34.615 20.33 0.00 0.00 4.75
3011 3439 6.365518 GGCTAGAGTCAACTTACACAACTAAC 59.634 42.308 0.00 0.00 0.00 2.34
3020 3448 2.538512 ACACAACTAACCTCGTTCCC 57.461 50.000 0.00 0.00 0.00 3.97
3033 3461 1.377612 GTTCCCGGGCCTAACTTGT 59.622 57.895 18.49 0.00 0.00 3.16
3066 3494 9.813826 AATGGAACCTAATTAAGAGATAATGGG 57.186 33.333 0.00 0.00 34.41 4.00
3079 3507 8.691194 AAGAGATAATGGGGAATCATATCAGA 57.309 34.615 0.00 0.00 0.00 3.27
3445 4520 6.534793 CAGGCATATTTGTAACCACCATTTTC 59.465 38.462 0.00 0.00 0.00 2.29
3663 4740 5.911752 TGACTTAATTTTTGTGTGCCACAT 58.088 33.333 0.00 0.00 44.16 3.21
3712 4790 2.706339 AGCTCCTTTAGGATGCACAG 57.294 50.000 16.94 1.18 44.46 3.66
3830 4908 6.824958 AGCTTACATGGTCCTATTTCCTTA 57.175 37.500 0.00 0.00 0.00 2.69
3850 4928 2.074729 TCTTCCCTACCTGAGCTAGC 57.925 55.000 6.62 6.62 0.00 3.42
3935 5013 2.089980 CATAGCTTTCCTTGCACAGCT 58.910 47.619 0.00 8.20 44.83 4.24
3939 5017 0.595095 CTTTCCTTGCACAGCTGACC 59.405 55.000 23.35 11.05 0.00 4.02
3954 5032 1.212688 CTGACCCACCAGGCATTCATA 59.787 52.381 0.00 0.00 40.58 2.15
4100 5178 5.877012 TCCATTGAAGCAGAGTAACAATCTC 59.123 40.000 0.00 0.00 0.00 2.75
4136 5214 2.278332 AAGGTCTGTTTTCTGCCTCC 57.722 50.000 0.00 0.00 0.00 4.30
4158 5236 7.013655 CCTCCAGATCATTTATTTTGGTGGTAG 59.986 40.741 0.00 0.00 34.61 3.18
4228 5306 5.010012 AGGAAAAGCTGATGTGTTAACTTGG 59.990 40.000 7.22 0.00 0.00 3.61
4240 5318 4.502645 GTGTTAACTTGGTTGTTGTGATGC 59.497 41.667 7.22 0.00 0.00 3.91
4292 5370 7.121611 TGTCATATTTTCATGATTGACACTGCT 59.878 33.333 15.82 0.00 38.71 4.24
4294 5372 9.346005 TCATATTTTCATGATTGACACTGCTAT 57.654 29.630 0.00 0.00 29.93 2.97
4301 5379 5.885230 TGATTGACACTGCTATTCAAAGG 57.115 39.130 0.00 0.00 33.13 3.11
4323 5401 5.185828 AGGAAAGTGTTGCTTGACTTCTTTT 59.814 36.000 0.00 0.00 37.52 2.27
4362 5440 7.602517 ACTTGCATCACAGATAGTTTAGTTC 57.397 36.000 0.00 0.00 0.00 3.01
4377 5455 2.698855 AGTTCGCATAATGACTGGCT 57.301 45.000 0.00 0.00 0.00 4.75
4414 5494 4.795278 CACGTCCAGAGTTACGGTTAATAC 59.205 45.833 0.00 0.00 43.25 1.89
4438 5518 3.960102 TGCTTGTCCCAATTTTCTGTTCT 59.040 39.130 0.00 0.00 0.00 3.01
4440 5520 4.984785 GCTTGTCCCAATTTTCTGTTCTTC 59.015 41.667 0.00 0.00 0.00 2.87
4444 5524 5.243730 TGTCCCAATTTTCTGTTCTTCCATC 59.756 40.000 0.00 0.00 0.00 3.51
4448 5528 4.928661 ATTTTCTGTTCTTCCATCGACG 57.071 40.909 0.00 0.00 0.00 5.12
4459 5539 0.736325 CCATCGACGTTTTCCGAGCT 60.736 55.000 3.45 0.00 40.70 4.09
4568 5648 3.077359 GCAATTGGCTTCTATCGGCTAT 58.923 45.455 7.72 0.00 40.25 2.97
4583 5663 8.258007 TCTATCGGCTATCGGATTTCATTTTAT 58.742 33.333 0.00 0.00 39.77 1.40
4615 5695 5.357742 ACAAGGAAACTCTTTGCCATTTT 57.642 34.783 0.00 0.00 42.68 1.82
4705 5785 4.035017 GTGGTCTTGTTTTGATCAACACG 58.965 43.478 17.52 8.56 36.36 4.49
4719 5799 2.216940 TCAACACGCGTAACTTTCTTCG 59.783 45.455 13.44 0.00 0.00 3.79
4729 5809 4.433805 CGTAACTTTCTTCGTATGTGCACC 60.434 45.833 15.69 0.00 0.00 5.01
4735 5815 1.876799 CTTCGTATGTGCACCAAACCA 59.123 47.619 15.69 0.00 0.00 3.67
4788 5868 0.970937 TCCTGGGCCTAACTCGACTG 60.971 60.000 4.53 0.00 0.00 3.51
4883 5963 5.067023 CCTTCAAGTTCCTGCCAATTCTATC 59.933 44.000 0.00 0.00 0.00 2.08
5045 6125 6.211184 CCTGTGAGGATCTATCTTATCAGCTT 59.789 42.308 0.00 0.00 37.67 3.74
5156 6236 8.560374 GCTTCACATCTTGTAACTAGTTCTTTT 58.440 33.333 12.39 0.00 0.00 2.27
5200 6280 3.630312 TCAACAAAGGTGTACAAAGAGGC 59.370 43.478 0.00 0.00 36.80 4.70
5214 6294 3.521529 GAGGCGGATGGTGATCGGG 62.522 68.421 0.00 0.00 31.18 5.14
5224 6304 4.028490 TGATCGGGGTGCCACCAC 62.028 66.667 17.22 12.00 41.02 4.16
5232 6312 1.244019 GGGTGCCACCACTGACAATC 61.244 60.000 17.22 0.00 41.02 2.67
5252 6332 4.756203 TCTATCAGATCTCACAGGGGAT 57.244 45.455 0.00 0.00 0.00 3.85
5297 6377 3.055819 TCCTCTATTCACAGAGTTGCCAC 60.056 47.826 0.00 0.00 40.47 5.01
5339 6422 0.466189 ACTATCCAATGCTTGCCCCG 60.466 55.000 0.00 0.00 0.00 5.73
5454 6537 3.132289 TCCTTATTCACCTGGCTACTTCG 59.868 47.826 0.00 0.00 0.00 3.79
5520 6603 0.178903 AGCAGTCACCTACTTCCCCA 60.179 55.000 0.00 0.00 35.76 4.96
5536 6619 0.999712 CCCAACCCAGTATGTTCCCT 59.000 55.000 0.00 0.00 0.00 4.20
5573 6656 9.121517 CATTATTCTGCTTGTACAACTTGAAAG 57.878 33.333 3.59 0.00 0.00 2.62
5659 6742 7.912383 GCATGTAAATGCTTGCAAGAATAATT 58.088 30.769 30.39 18.49 43.79 1.40
5674 6757 7.592903 GCAAGAATAATTTACTAATGCTCCTGC 59.407 37.037 0.00 0.00 40.20 4.85
5814 6897 3.381272 ACTGTATTTGTGCTGTTTGTGCT 59.619 39.130 0.00 0.00 0.00 4.40
5820 6903 0.317603 GTGCTGTTTGTGCTGCTCTG 60.318 55.000 0.00 0.00 34.93 3.35
6073 7156 3.056107 CCTCTCCGTTGAAGATACCAACA 60.056 47.826 0.00 0.00 42.83 3.33
6080 7163 4.635765 CGTTGAAGATACCAACACCATCAT 59.364 41.667 0.00 0.00 42.83 2.45
6136 7219 4.498682 GGCTTTATTCATCCACATGACAGC 60.499 45.833 0.00 0.00 38.86 4.40
6183 7266 3.193267 GCATTGCACATGGAAGTTAGGAA 59.807 43.478 3.15 0.00 0.00 3.36
6228 7311 4.809958 CAGACCATATTCTGCTTCTGACAG 59.190 45.833 0.00 0.00 36.83 3.51
6239 7322 4.380531 TGCTTCTGACAGTAAACCTTCTG 58.619 43.478 1.59 0.00 37.65 3.02
6467 7550 7.228706 ACAGAAATTAAGGTCAGTGTTAGGTTG 59.771 37.037 0.00 0.00 0.00 3.77
6574 7720 8.590204 TGTTAGTGTAACCTTGAATCACATCTA 58.410 33.333 0.00 0.00 37.80 1.98
6703 7849 6.500684 ACACTACACAATTTGCAGGAATAG 57.499 37.500 0.00 0.00 0.00 1.73
6908 8054 3.583228 TCCTAACTTGGTTCTCCAGTCA 58.417 45.455 0.00 0.00 45.22 3.41
6943 8090 3.737172 GGCGGCGACAATGCAAGT 61.737 61.111 12.98 0.00 36.28 3.16
6959 8106 1.000274 CAAGTTTGCCCTGCAGTAACC 60.000 52.381 13.81 0.00 40.61 2.85
7080 8228 2.368311 AAGTTTTGGCGTTCCCCTTA 57.632 45.000 0.00 0.00 0.00 2.69
7110 8258 4.096190 ACAGGATGCAAAGATGGATAGG 57.904 45.455 0.00 0.00 42.53 2.57
7257 8416 6.058183 AGTAACATTAGCTGCCTAGAAATGG 58.942 40.000 0.00 0.00 35.13 3.16
7293 8454 4.572985 TGAGATTTTGGAGTTGCAGTTG 57.427 40.909 0.00 0.00 0.00 3.16
7296 8457 6.003326 TGAGATTTTGGAGTTGCAGTTGATA 58.997 36.000 0.00 0.00 0.00 2.15
7297 8458 6.072508 TGAGATTTTGGAGTTGCAGTTGATAC 60.073 38.462 0.00 0.00 0.00 2.24
7298 8459 5.769662 AGATTTTGGAGTTGCAGTTGATACA 59.230 36.000 0.00 0.00 0.00 2.29
7299 8460 6.435277 AGATTTTGGAGTTGCAGTTGATACAT 59.565 34.615 0.00 0.00 0.00 2.29
7300 8461 6.403866 TTTTGGAGTTGCAGTTGATACATT 57.596 33.333 0.00 0.00 0.00 2.71
7301 8462 5.627499 TTGGAGTTGCAGTTGATACATTC 57.373 39.130 0.00 0.00 0.00 2.67
7302 8463 4.910195 TGGAGTTGCAGTTGATACATTCT 58.090 39.130 0.00 0.00 0.00 2.40
7303 8464 4.696877 TGGAGTTGCAGTTGATACATTCTG 59.303 41.667 0.00 0.00 0.00 3.02
7304 8465 4.697352 GGAGTTGCAGTTGATACATTCTGT 59.303 41.667 0.00 0.00 0.00 3.41
7305 8466 5.163814 GGAGTTGCAGTTGATACATTCTGTC 60.164 44.000 0.00 0.00 0.00 3.51
7306 8467 5.308014 AGTTGCAGTTGATACATTCTGTCA 58.692 37.500 0.00 0.00 0.00 3.58
7307 8468 5.410746 AGTTGCAGTTGATACATTCTGTCAG 59.589 40.000 0.00 0.00 0.00 3.51
7308 8469 3.686241 TGCAGTTGATACATTCTGTCAGC 59.314 43.478 0.00 0.00 0.00 4.26
7309 8470 3.242220 GCAGTTGATACATTCTGTCAGCG 60.242 47.826 0.00 0.00 0.00 5.18
7310 8471 3.928992 CAGTTGATACATTCTGTCAGCGT 59.071 43.478 0.00 0.00 0.00 5.07
7311 8472 4.389992 CAGTTGATACATTCTGTCAGCGTT 59.610 41.667 0.00 0.00 0.00 4.84
7312 8473 4.627467 AGTTGATACATTCTGTCAGCGTTC 59.373 41.667 0.00 0.00 0.00 3.95
7313 8474 4.456280 TGATACATTCTGTCAGCGTTCT 57.544 40.909 0.00 0.00 0.00 3.01
7314 8475 4.176271 TGATACATTCTGTCAGCGTTCTG 58.824 43.478 0.00 0.00 41.67 3.02
7315 8476 2.533266 ACATTCTGTCAGCGTTCTGT 57.467 45.000 0.00 0.00 41.10 3.41
7316 8477 3.660501 ACATTCTGTCAGCGTTCTGTA 57.339 42.857 0.00 0.00 41.10 2.74
7317 8478 4.193826 ACATTCTGTCAGCGTTCTGTAT 57.806 40.909 0.00 0.00 41.10 2.29
7318 8479 4.177026 ACATTCTGTCAGCGTTCTGTATC 58.823 43.478 0.00 0.00 41.10 2.24
7319 8480 4.081972 ACATTCTGTCAGCGTTCTGTATCT 60.082 41.667 0.00 0.00 41.10 1.98
7320 8481 4.521130 TTCTGTCAGCGTTCTGTATCTT 57.479 40.909 0.00 0.00 41.10 2.40
7321 8482 4.521130 TCTGTCAGCGTTCTGTATCTTT 57.479 40.909 0.00 0.00 41.10 2.52
7322 8483 4.486090 TCTGTCAGCGTTCTGTATCTTTC 58.514 43.478 0.00 0.00 41.10 2.62
7346 8507 6.016693 TCACATGGAAAGAAATTTTGCTCGTA 60.017 34.615 0.00 0.00 0.00 3.43
7377 8538 7.201548 GCCTTGCCTTATCATTGTTGTTAATTG 60.202 37.037 0.00 0.00 0.00 2.32
7449 8610 4.713553 TGTTAGCTCTGTTTCATGTTGGA 58.286 39.130 0.00 0.00 0.00 3.53
7455 8616 4.301628 CTCTGTTTCATGTTGGAAAAGGC 58.698 43.478 0.00 0.00 38.41 4.35
7459 8620 0.958091 TCATGTTGGAAAAGGCGGTG 59.042 50.000 0.00 0.00 0.00 4.94
7466 8627 0.521735 GGAAAAGGCGGTGTGATGTC 59.478 55.000 0.00 0.00 0.00 3.06
7526 8687 2.514803 GTAGGGCAGAAATGTGTGGTT 58.485 47.619 0.00 0.00 0.00 3.67
7537 8698 7.201723 GCAGAAATGTGTGGTTATATCATGTCA 60.202 37.037 0.00 0.00 0.00 3.58
7583 8747 4.979197 GCAACTAGAATCCGAGTCATGTAG 59.021 45.833 0.00 0.00 0.00 2.74
7584 8748 5.450688 GCAACTAGAATCCGAGTCATGTAGT 60.451 44.000 0.00 0.00 0.00 2.73
7585 8749 6.202937 CAACTAGAATCCGAGTCATGTAGTC 58.797 44.000 0.00 0.00 0.00 2.59
7586 8750 5.437946 ACTAGAATCCGAGTCATGTAGTCA 58.562 41.667 0.00 0.00 0.00 3.41
7728 8892 9.878667 ATGACAATTATTTTTGCAGAATGATGA 57.121 25.926 7.44 0.00 39.69 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 2.724454 CGTAAACTCTCCTCCCTCTCA 58.276 52.381 0.00 0.00 0.00 3.27
31 33 0.460722 GGAGCGTAAACTCTCCTCCC 59.539 60.000 11.13 0.00 42.90 4.30
50 52 2.354604 GGAAGAAGAAGTGAGGAGGCAG 60.355 54.545 0.00 0.00 0.00 4.85
92 96 2.069273 CGAAGAAAAGAGCACATCCGT 58.931 47.619 0.00 0.00 0.00 4.69
131 135 0.671796 TGAGTGTGTCGTAGTGGTGG 59.328 55.000 0.00 0.00 0.00 4.61
143 147 0.035317 TGCTAGCCAAGGTGAGTGTG 59.965 55.000 13.29 0.00 0.00 3.82
221 226 1.878522 CCTCGCGACCGAATGGAAG 60.879 63.158 3.71 0.00 43.87 3.46
228 233 1.712018 CTCACATACCTCGCGACCGA 61.712 60.000 3.71 0.00 42.01 4.69
240 245 3.639561 TGAAATAGGTAGCCGCTCACATA 59.360 43.478 0.00 0.00 0.00 2.29
251 256 7.333672 AGTTAAAAGAAGGCGTGAAATAGGTAG 59.666 37.037 0.00 0.00 0.00 3.18
262 267 3.306849 GGGAGAGAGTTAAAAGAAGGCGT 60.307 47.826 0.00 0.00 0.00 5.68
274 279 4.696040 AGGTACTAAAGGGGAGAGAGTT 57.304 45.455 0.00 0.00 36.02 3.01
323 353 3.856813 TCTACAAGGTAGGGGAGAAGAGA 59.143 47.826 3.77 0.00 0.00 3.10
325 355 3.335786 TGTCTACAAGGTAGGGGAGAAGA 59.664 47.826 3.77 0.00 0.00 2.87
327 357 3.839323 TGTCTACAAGGTAGGGGAGAA 57.161 47.619 3.77 0.00 0.00 2.87
387 419 5.134339 AGGCAGGTGGATGAATAAAGGAATA 59.866 40.000 0.00 0.00 0.00 1.75
395 427 2.439507 GAGGAAGGCAGGTGGATGAATA 59.560 50.000 0.00 0.00 0.00 1.75
445 477 3.818787 GGCGCTGGGCAATGTCAG 61.819 66.667 18.70 0.00 46.16 3.51
504 537 5.041951 TCTTTCAAATCTTTATTGCGCGT 57.958 34.783 8.43 0.00 0.00 6.01
534 567 1.605232 CTTTTAAGGGCACGAACCGTT 59.395 47.619 10.36 10.36 38.32 4.44
535 568 1.232119 CTTTTAAGGGCACGAACCGT 58.768 50.000 0.00 0.00 42.36 4.83
550 583 7.343574 AGTTTAGGGTTTATGACACAACCTTTT 59.656 33.333 15.06 6.92 42.04 2.27
551 584 6.837048 AGTTTAGGGTTTATGACACAACCTTT 59.163 34.615 15.06 8.71 42.04 3.11
628 664 3.257393 CCTCACGATGTCCTCTTCTTTG 58.743 50.000 0.00 0.00 0.00 2.77
631 667 1.006043 TCCCTCACGATGTCCTCTTCT 59.994 52.381 0.00 0.00 0.00 2.85
656 701 1.824230 CTCCTCCTCACACCTCTTGAG 59.176 57.143 0.00 0.00 40.30 3.02
658 703 0.901124 CCTCCTCCTCACACCTCTTG 59.099 60.000 0.00 0.00 0.00 3.02
659 704 0.907230 GCCTCCTCCTCACACCTCTT 60.907 60.000 0.00 0.00 0.00 2.85
660 705 1.305718 GCCTCCTCCTCACACCTCT 60.306 63.158 0.00 0.00 0.00 3.69
661 706 1.610673 TGCCTCCTCCTCACACCTC 60.611 63.158 0.00 0.00 0.00 3.85
662 707 1.611851 CTGCCTCCTCCTCACACCT 60.612 63.158 0.00 0.00 0.00 4.00
663 708 2.664081 CCTGCCTCCTCCTCACACC 61.664 68.421 0.00 0.00 0.00 4.16
664 709 1.194781 TTCCTGCCTCCTCCTCACAC 61.195 60.000 0.00 0.00 0.00 3.82
665 710 0.906756 CTTCCTGCCTCCTCCTCACA 60.907 60.000 0.00 0.00 0.00 3.58
666 711 1.621672 CCTTCCTGCCTCCTCCTCAC 61.622 65.000 0.00 0.00 0.00 3.51
667 712 1.306482 CCTTCCTGCCTCCTCCTCA 60.306 63.158 0.00 0.00 0.00 3.86
668 713 2.069430 CCCTTCCTGCCTCCTCCTC 61.069 68.421 0.00 0.00 0.00 3.71
669 714 2.041928 CCCTTCCTGCCTCCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
670 715 2.041265 TCCCTTCCTGCCTCCTCC 59.959 66.667 0.00 0.00 0.00 4.30
777 822 2.604991 GGCGAGGGGAGGGGATAG 60.605 72.222 0.00 0.00 0.00 2.08
919 964 1.971357 AGAAGAAGACGGAAGCTTGGA 59.029 47.619 2.10 0.00 0.00 3.53
1066 1111 1.004891 GGGAGATGGAGGAGGGGTT 59.995 63.158 0.00 0.00 0.00 4.11
1077 1122 2.280389 CATGCGTCCGGGGAGATG 60.280 66.667 0.00 0.00 0.00 2.90
1185 1230 0.892755 ACTTGACGAGGCGTTGGATA 59.107 50.000 0.00 0.00 41.37 2.59
1544 1590 1.685224 GATCACACTGGGGCCAGAA 59.315 57.895 4.39 0.00 46.30 3.02
1551 1597 0.807667 GCTAGCACGATCACACTGGG 60.808 60.000 10.63 0.00 0.00 4.45
1629 1675 4.578516 TGGCCAATAAAACCTCGACATATG 59.421 41.667 0.61 0.00 0.00 1.78
1690 1737 5.759059 AGTCAAGCAATATGATGAGGGAAA 58.241 37.500 0.00 0.00 0.00 3.13
1710 1757 7.194278 TCTGCACTTGTCGTAAATAGATAGTC 58.806 38.462 0.00 0.00 0.00 2.59
1826 1873 5.306160 AGGGCATTTATCCAAAAGGATCATG 59.694 40.000 0.00 6.32 0.00 3.07
1870 1917 5.549347 TGCAGAAACATGGTTTTATTGCAT 58.451 33.333 16.73 0.00 35.69 3.96
1909 1956 4.028131 ACATGTACATAACCCTTCCTCGA 58.972 43.478 8.32 0.00 0.00 4.04
1956 2003 4.081406 CAGGGAACAATGATCCAAGACAA 58.919 43.478 11.69 0.00 38.80 3.18
2070 2118 3.834231 AGCATACCAAGAAAACTGCCATT 59.166 39.130 0.00 0.00 0.00 3.16
2077 2125 6.799512 AGCATATTGAGCATACCAAGAAAAC 58.200 36.000 0.00 0.00 0.00 2.43
2081 2129 7.012327 GTGTAAAGCATATTGAGCATACCAAGA 59.988 37.037 0.00 0.00 0.00 3.02
2157 2205 4.701956 ATGGTTTTTCTCTAACGCCATG 57.298 40.909 0.00 0.00 32.44 3.66
2163 2211 6.014647 AGGGGGTTTATGGTTTTTCTCTAAC 58.985 40.000 0.00 0.00 0.00 2.34
2311 2491 8.556213 AGTTTGAAAAAGGGAAAAAGGTTAAC 57.444 30.769 0.00 0.00 0.00 2.01
2626 2821 9.686683 GAATGTCATTACCCAGCCTTATATAAT 57.313 33.333 0.00 0.00 0.00 1.28
2669 2864 7.629157 TGGTAGGACAAGAATGATATCAACAA 58.371 34.615 9.99 0.00 0.00 2.83
2921 3337 2.108168 CCAGTTCTATCCTCGTTCCCA 58.892 52.381 0.00 0.00 0.00 4.37
2989 3405 7.521099 CGAGGTTAGTTGTGTAAGTTGACTCTA 60.521 40.741 0.00 0.00 0.00 2.43
3020 3448 2.754946 TGTTAGACAAGTTAGGCCCG 57.245 50.000 0.00 0.00 0.00 6.13
3066 3494 8.359875 TGAGATAAGACCTCTGATATGATTCC 57.640 38.462 0.00 0.00 0.00 3.01
3079 3507 5.965033 AACCATGACATGAGATAAGACCT 57.035 39.130 17.24 0.00 0.00 3.85
3121 3549 4.916983 AACAATATGCGGCAACATGTAT 57.083 36.364 6.82 0.00 0.00 2.29
3381 3920 6.836527 TGATAACAAGGAAGTTCTTTTCCCAA 59.163 34.615 2.25 0.00 46.38 4.12
3830 4908 2.178984 AGCTAGCTCAGGTAGGGAAGAT 59.821 50.000 12.68 0.00 34.62 2.40
3850 4928 5.358442 AGATCAGGCTGTGTACACTTACTAG 59.642 44.000 25.60 15.41 0.00 2.57
3924 5002 2.113774 TGGGTCAGCTGTGCAAGG 59.886 61.111 14.67 0.00 0.00 3.61
3935 5013 1.294041 TATGAATGCCTGGTGGGTCA 58.706 50.000 0.00 0.00 37.43 4.02
3939 5017 4.342951 ACAATCATTATGAATGCCTGGTGG 59.657 41.667 9.90 0.00 38.77 4.61
3954 5032 3.826157 TCCCGCTCAAGAAAACAATCATT 59.174 39.130 0.00 0.00 0.00 2.57
4136 5214 9.793252 CTTTCTACCACCAAAATAAATGATCTG 57.207 33.333 0.00 0.00 0.00 2.90
4158 5236 9.674824 CATAGTTGAAAGCATAATCATCCTTTC 57.325 33.333 0.00 0.00 42.00 2.62
4177 5255 8.964476 AATTCCCTATAGTTGTGACATAGTTG 57.036 34.615 0.00 0.00 0.00 3.16
4228 5306 5.388225 AAACAATTTCGCATCACAACAAC 57.612 34.783 0.00 0.00 0.00 3.32
4280 5358 6.500684 TTCCTTTGAATAGCAGTGTCAATC 57.499 37.500 0.00 0.00 31.66 2.67
4281 5359 6.491403 ACTTTCCTTTGAATAGCAGTGTCAAT 59.509 34.615 0.00 0.00 31.66 2.57
4292 5370 6.321181 AGTCAAGCAACACTTTCCTTTGAATA 59.679 34.615 0.00 0.00 36.04 1.75
4294 5372 4.462483 AGTCAAGCAACACTTTCCTTTGAA 59.538 37.500 0.00 0.00 36.04 2.69
4301 5379 5.516696 GGAAAAGAAGTCAAGCAACACTTTC 59.483 40.000 0.00 0.00 36.04 2.62
4323 5401 6.770785 GTGATGCAAGTACATAAATTAGGGGA 59.229 38.462 0.00 0.00 0.00 4.81
4362 5440 3.549423 CCATTTCAGCCAGTCATTATGCG 60.549 47.826 0.00 0.00 0.00 4.73
4438 5518 1.705256 CTCGGAAAACGTCGATGGAA 58.295 50.000 9.90 0.00 44.69 3.53
4440 5520 0.736325 AGCTCGGAAAACGTCGATGG 60.736 55.000 9.90 0.00 44.69 3.51
4444 5524 2.028883 GGAATTAGCTCGGAAAACGTCG 59.971 50.000 0.00 0.00 44.69 5.12
4448 5528 7.927092 ACTATAAGAGGAATTAGCTCGGAAAAC 59.073 37.037 0.00 0.00 0.00 2.43
4568 5648 6.987386 ACACAAACCATAAAATGAAATCCGA 58.013 32.000 0.00 0.00 0.00 4.55
4583 5663 4.850680 AGAGTTTCCTTGTACACAAACCA 58.149 39.130 15.72 0.00 35.15 3.67
4705 5785 3.122278 TGCACATACGAAGAAAGTTACGC 59.878 43.478 0.00 0.00 0.00 4.42
4719 5799 2.621055 TGAAGTGGTTTGGTGCACATAC 59.379 45.455 20.43 12.48 0.00 2.39
4735 5815 8.375506 TCAAACTAAAGACTATGTCCATGAAGT 58.624 33.333 0.00 0.00 32.18 3.01
4752 5832 7.236640 AGGCCCAGGAAATAAAATCAAACTAAA 59.763 33.333 0.00 0.00 0.00 1.85
4788 5868 1.839424 AAGTTACCTGGGCATTCAGC 58.161 50.000 0.00 0.00 44.65 4.26
4883 5963 4.248859 AGAACTGATTGACTTCATCCACG 58.751 43.478 0.00 0.00 0.00 4.94
5075 6155 3.795688 TGTTCCTCCTGCTTCAGAAAT 57.204 42.857 0.00 0.00 32.44 2.17
5077 6157 3.369892 GCTATGTTCCTCCTGCTTCAGAA 60.370 47.826 0.00 0.00 32.44 3.02
5156 6236 3.244875 ACATCCCATTGCTCACACTAACA 60.245 43.478 0.00 0.00 0.00 2.41
5200 6280 2.108976 CACCCCGATCACCATCCG 59.891 66.667 0.00 0.00 0.00 4.18
5214 6294 0.250901 AGATTGTCAGTGGTGGCACC 60.251 55.000 29.75 29.75 38.28 5.01
5224 6304 6.448852 CCTGTGAGATCTGATAGATTGTCAG 58.551 44.000 7.51 0.00 43.46 3.51
5232 6312 5.777223 TGTAATCCCCTGTGAGATCTGATAG 59.223 44.000 0.00 0.00 0.00 2.08
5297 6377 4.760530 TGGATGAACTGGATAGTCTTGG 57.239 45.455 0.00 0.00 35.69 3.61
5339 6422 4.513442 TGTTCTGATATTGTACAGGTGGC 58.487 43.478 0.00 0.00 35.20 5.01
5454 6537 4.086574 GTGCGATAAAACGGCTTTAAGAC 58.913 43.478 0.00 0.00 33.20 3.01
5573 6656 7.167468 ACAAAATTCAGTTTACTCGAAATGCAC 59.833 33.333 0.00 0.00 0.00 4.57
5659 6742 2.093711 TCAAGCGCAGGAGCATTAGTAA 60.094 45.455 11.47 0.00 42.27 2.24
5674 6757 6.662414 TCCAGTATCACTTTAATTCAAGCG 57.338 37.500 0.00 0.00 0.00 4.68
5805 6888 1.672363 CAAGACAGAGCAGCACAAACA 59.328 47.619 0.00 0.00 0.00 2.83
5923 7006 8.856490 AACGGTGATGCTTTTGATAATTATTC 57.144 30.769 0.00 0.00 0.00 1.75
6073 7156 3.137176 CCTGTGTAGAATGGGATGATGGT 59.863 47.826 0.00 0.00 0.00 3.55
6080 7163 8.504811 TGAATATTATCCTGTGTAGAATGGGA 57.495 34.615 0.00 0.00 0.00 4.37
6183 7266 4.527816 TGTTAGCTTGATTTTGGGAAGCAT 59.472 37.500 0.00 0.00 43.78 3.79
6228 7311 2.814336 CTCAGGGTTGCAGAAGGTTTAC 59.186 50.000 0.00 0.00 0.00 2.01
6239 7322 1.205893 AGAGTTCGATCTCAGGGTTGC 59.794 52.381 22.22 0.00 36.97 4.17
6331 7414 8.183830 TGAAACAGTTGACTTTATTGCTTTTG 57.816 30.769 0.00 0.00 0.00 2.44
6343 7426 4.322049 CGTCCCTCTATGAAACAGTTGACT 60.322 45.833 0.00 0.00 0.00 3.41
6500 7583 3.107642 AGTGTTCTAGTGTGGGTTTCG 57.892 47.619 0.00 0.00 0.00 3.46
6574 7720 5.416271 AGGAATGCATTTTCAAGCTGAAT 57.584 34.783 14.33 0.00 36.11 2.57
6703 7849 5.858381 TGTCCTTGAGATGATATGGCTTAC 58.142 41.667 0.00 0.00 0.00 2.34
6883 8029 4.256920 CTGGAGAACCAAGTTAGGATGTG 58.743 47.826 0.00 0.00 46.32 3.21
6908 8054 2.498167 GCCGCATAAGGTGAATCTGAT 58.502 47.619 0.00 0.00 0.00 2.90
6943 8090 0.179015 TTCGGTTACTGCAGGGCAAA 60.179 50.000 19.93 3.81 38.41 3.68
6959 8106 0.392595 GGGTAGGGGCTGAAACTTCG 60.393 60.000 0.00 0.00 0.00 3.79
7052 8200 5.581479 GGGAACGCCAAAACTTTAAAGAAAA 59.419 36.000 21.92 0.00 35.15 2.29
7080 8228 0.482446 TTGCATCCTGTTCCCCACTT 59.518 50.000 0.00 0.00 0.00 3.16
7133 8292 3.252215 CGAATGCTCACAGGGTAAAAACA 59.748 43.478 0.00 0.00 0.00 2.83
7143 8302 1.329906 GCAATCCTCGAATGCTCACAG 59.670 52.381 5.26 0.00 35.78 3.66
7176 8335 4.625742 CCCAGACAGATTAACACTACAACG 59.374 45.833 0.00 0.00 0.00 4.10
7177 8336 5.548406 ACCCAGACAGATTAACACTACAAC 58.452 41.667 0.00 0.00 0.00 3.32
7257 8416 5.869753 AAATCTCATATGCAACGCCTATC 57.130 39.130 0.00 0.00 0.00 2.08
7297 8458 4.428209 AGATACAGAACGCTGACAGAATG 58.572 43.478 6.65 0.00 45.17 2.67
7298 8459 4.727507 AGATACAGAACGCTGACAGAAT 57.272 40.909 6.65 0.00 45.17 2.40
7299 8460 4.521130 AAGATACAGAACGCTGACAGAA 57.479 40.909 6.65 0.00 45.17 3.02
7300 8461 4.022329 TGAAAGATACAGAACGCTGACAGA 60.022 41.667 6.65 0.00 45.17 3.41
7301 8462 4.090642 GTGAAAGATACAGAACGCTGACAG 59.909 45.833 0.00 0.00 45.17 3.51
7302 8463 3.987868 GTGAAAGATACAGAACGCTGACA 59.012 43.478 0.00 0.00 45.17 3.58
7303 8464 3.987868 TGTGAAAGATACAGAACGCTGAC 59.012 43.478 0.00 0.00 45.17 3.51
7304 8465 4.251543 TGTGAAAGATACAGAACGCTGA 57.748 40.909 0.00 0.00 45.17 4.26
7305 8466 9.161507 TTTCCATGTGAAAGATACAGAACGCTG 62.162 40.741 5.55 0.00 41.68 5.18
7306 8467 3.935203 CCATGTGAAAGATACAGAACGCT 59.065 43.478 0.00 0.00 0.00 5.07
7307 8468 3.932710 TCCATGTGAAAGATACAGAACGC 59.067 43.478 0.00 0.00 0.00 4.84
7308 8469 6.480524 TTTCCATGTGAAAGATACAGAACG 57.519 37.500 5.55 0.00 38.04 3.95
7319 8480 6.200665 CGAGCAAAATTTCTTTCCATGTGAAA 59.799 34.615 8.48 8.48 40.64 2.69
7320 8481 5.691305 CGAGCAAAATTTCTTTCCATGTGAA 59.309 36.000 0.00 0.00 0.00 3.18
7321 8482 5.221224 ACGAGCAAAATTTCTTTCCATGTGA 60.221 36.000 0.00 0.00 0.00 3.58
7322 8483 4.984161 ACGAGCAAAATTTCTTTCCATGTG 59.016 37.500 0.00 0.00 0.00 3.21
7346 8507 3.770933 ACAATGATAAGGCAAGGCACAAT 59.229 39.130 0.00 0.00 0.00 2.71
7401 8562 9.182214 AGTTGAGCATAATGATGTTACAAATCT 57.818 29.630 0.00 0.00 35.30 2.40
7402 8563 9.229784 CAGTTGAGCATAATGATGTTACAAATC 57.770 33.333 0.00 0.00 35.30 2.17
7403 8564 8.742777 ACAGTTGAGCATAATGATGTTACAAAT 58.257 29.630 0.00 0.00 35.30 2.32
7404 8565 8.109705 ACAGTTGAGCATAATGATGTTACAAA 57.890 30.769 0.00 0.00 35.30 2.83
7424 8585 5.009010 CCAACATGAAACAGAGCTAACAGTT 59.991 40.000 0.00 0.00 0.00 3.16
7449 8610 0.250124 TCGACATCACACCGCCTTTT 60.250 50.000 0.00 0.00 0.00 2.27
7455 8616 2.844122 TCATACTCGACATCACACCG 57.156 50.000 0.00 0.00 0.00 4.94
7459 8620 5.063944 ACAAGCAAATCATACTCGACATCAC 59.936 40.000 0.00 0.00 0.00 3.06
7466 8627 6.237384 GCAAAATCACAAGCAAATCATACTCG 60.237 38.462 0.00 0.00 0.00 4.18
7526 8687 8.710835 TTTACGCTTGAAAGTGACATGATATA 57.289 30.769 10.45 0.00 39.74 0.86
7583 8747 7.276658 CCTATTCAAACATGTCACTAGACTGAC 59.723 40.741 0.00 6.55 45.20 3.51
7584 8748 7.178451 TCCTATTCAAACATGTCACTAGACTGA 59.822 37.037 0.00 0.00 45.20 3.41
7585 8749 7.323420 TCCTATTCAAACATGTCACTAGACTG 58.677 38.462 0.00 0.00 45.20 3.51
7586 8750 7.482169 TCCTATTCAAACATGTCACTAGACT 57.518 36.000 0.00 0.00 45.20 3.24
7604 8768 7.360353 CGATTGAACATATCGTTGCATCCTATT 60.360 37.037 0.00 0.00 39.88 1.73
7728 8892 5.104193 ACAGCCAGAATTCAAGGTATGATCT 60.104 40.000 20.53 8.15 38.03 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.