Multiple sequence alignment - TraesCS5B01G146000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G146000 chr5B 100.000 2441 0 0 1 2441 273460346 273457906 0.000000e+00 4508.0
1 TraesCS5B01G146000 chr5A 91.395 1720 96 19 88 1778 325185495 325183799 0.000000e+00 2309.0
2 TraesCS5B01G146000 chr5A 88.280 657 65 6 1770 2421 325180664 325180015 0.000000e+00 776.0
3 TraesCS5B01G146000 chr5A 93.750 80 4 1 1 79 325190930 325190851 4.260000e-23 119.0
4 TraesCS5B01G146000 chr5D 91.549 1491 81 7 701 2175 231787943 231789404 0.000000e+00 2013.0
5 TraesCS5B01G146000 chr5D 91.231 707 51 6 1 697 231785311 231786016 0.000000e+00 952.0
6 TraesCS5B01G146000 chr5D 90.367 218 20 1 2145 2361 231789404 231789621 3.970000e-73 285.0
7 TraesCS5B01G146000 chr2D 82.909 550 52 18 1888 2421 129957205 129957728 7.960000e-125 457.0
8 TraesCS5B01G146000 chr2D 82.396 551 51 17 1888 2421 43726531 43726010 2.880000e-119 438.0
9 TraesCS5B01G146000 chr2D 82.413 489 53 15 1888 2370 41862460 41861999 1.760000e-106 396.0
10 TraesCS5B01G146000 chr2D 97.727 88 2 0 1555 1642 34022967 34022880 4.200000e-33 152.0
11 TraesCS5B01G146000 chr4A 85.771 253 20 10 2188 2425 705246757 705246506 1.120000e-63 254.0
12 TraesCS5B01G146000 chr3A 82.373 295 31 10 1891 2185 144533899 144533626 1.130000e-58 237.0
13 TraesCS5B01G146000 chr3A 84.774 243 24 10 2188 2421 144533572 144533334 5.250000e-57 231.0
14 TraesCS5B01G146000 chr2A 90.909 99 5 2 1888 1986 679266210 679266304 1.970000e-26 130.0
15 TraesCS5B01G146000 chr2A 95.238 42 2 0 2173 2214 611169081 611169040 1.570000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G146000 chr5B 273457906 273460346 2440 True 4508.000000 4508 100.0000 1 2441 1 chr5B.!!$R1 2440
1 TraesCS5B01G146000 chr5A 325180015 325185495 5480 True 1542.500000 2309 89.8375 88 2421 2 chr5A.!!$R2 2333
2 TraesCS5B01G146000 chr5D 231785311 231789621 4310 False 1083.333333 2013 91.0490 1 2361 3 chr5D.!!$F1 2360
3 TraesCS5B01G146000 chr2D 129957205 129957728 523 False 457.000000 457 82.9090 1888 2421 1 chr2D.!!$F1 533
4 TraesCS5B01G146000 chr2D 43726010 43726531 521 True 438.000000 438 82.3960 1888 2421 1 chr2D.!!$R3 533
5 TraesCS5B01G146000 chr3A 144533334 144533899 565 True 234.000000 237 83.5735 1891 2421 2 chr3A.!!$R1 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.179012 GGGGAAGTCCGTTTCCAACA 60.179 55.0 11.29 0.0 46.89 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 3631 0.102481 ACACGCTGAACAGAACGAGT 59.898 50.0 5.97 3.13 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.008019 AGCTTCACACACATAAACTTGACAG 59.992 40.000 0.00 0.00 0.00 3.51
40 41 4.559862 ACTTGACAGTAAAGATCCAGGG 57.440 45.455 4.45 0.00 0.00 4.45
46 47 3.519913 ACAGTAAAGATCCAGGGGAAGTC 59.480 47.826 0.00 0.00 34.34 3.01
57 58 0.179012 GGGGAAGTCCGTTTCCAACA 60.179 55.000 11.29 0.00 46.89 3.33
67 68 5.008316 AGTCCGTTTCCAACAAAAGACATAC 59.992 40.000 0.00 0.00 0.00 2.39
74 76 4.641094 TCCAACAAAAGACATACGGTGTTT 59.359 37.500 0.00 0.00 44.10 2.83
107 109 0.528924 CCATCGACGTACTGTCCCAA 59.471 55.000 10.76 0.79 45.23 4.12
116 118 0.618458 TACTGTCCCAATGGAGCCAC 59.382 55.000 0.00 0.00 42.85 5.01
141 143 6.874134 CGATGTCCATTTTATCCCTAGTTAGG 59.126 42.308 0.00 0.00 43.25 2.69
152 154 0.464452 CTAGTTAGGGCCCGTGGAAG 59.536 60.000 18.44 9.19 0.00 3.46
172 174 1.511850 CTCCGCATCTCACAACACAA 58.488 50.000 0.00 0.00 0.00 3.33
197 199 0.550914 TGTATCCCCCAACCAGATGC 59.449 55.000 0.00 0.00 0.00 3.91
219 221 5.998981 TGCCTTTCCAAAATCTCGTACTTTA 59.001 36.000 0.00 0.00 0.00 1.85
238 240 2.710096 ATCCAATCCCAACGACGAAT 57.290 45.000 0.00 0.00 0.00 3.34
274 276 9.712305 CTAACAAAAAGATCCTCTTTCACTCTA 57.288 33.333 2.81 0.00 45.19 2.43
290 292 6.877611 TCACTCTAATCAAACCTTTCCAAC 57.122 37.500 0.00 0.00 0.00 3.77
356 358 6.755607 CGGAGGTATTTGTTAGGAAGTACTTC 59.244 42.308 24.73 24.73 38.80 3.01
444 447 5.720371 ATGAAGATCCTCAATACCGAGAG 57.280 43.478 0.00 0.00 34.79 3.20
529 540 3.965470 AACTTCCCACTTGGTTAACCT 57.035 42.857 24.78 2.38 36.82 3.50
602 618 6.877611 AGGAAGTGCCAATATTTAATACCG 57.122 37.500 0.00 0.00 40.02 4.02
641 657 8.613922 ATTCATCTCCCAAAATTATTGGAGTT 57.386 30.769 16.38 7.51 43.91 3.01
655 671 8.868522 ATTATTGGAGTTGAAGATTCACTTGA 57.131 30.769 0.00 0.00 39.13 3.02
725 2664 2.684881 CAAATTGAGGATCCAAGGGACG 59.315 50.000 15.82 0.00 32.98 4.79
737 2676 0.620556 AAGGGACGATTGCATCCAGT 59.379 50.000 6.42 0.00 36.65 4.00
752 2691 4.218417 GCATCCAGTTCTAAACACACCATT 59.782 41.667 0.00 0.00 0.00 3.16
765 2704 7.523293 AAACACACCATTATGATTTCAGTGA 57.477 32.000 0.00 0.00 0.00 3.41
768 2707 8.806429 ACACACCATTATGATTTCAGTGATAA 57.194 30.769 0.00 0.00 0.00 1.75
794 2733 1.457267 TTCCAAAGCCCAGCTGCAA 60.457 52.632 8.66 0.00 39.62 4.08
829 2768 5.289595 CCTTCGGAAGGGAAAAAGAAAAAG 58.710 41.667 25.98 0.00 45.27 2.27
830 2769 4.929819 TCGGAAGGGAAAAAGAAAAAGG 57.070 40.909 0.00 0.00 0.00 3.11
831 2770 3.639561 TCGGAAGGGAAAAAGAAAAAGGG 59.360 43.478 0.00 0.00 0.00 3.95
832 2771 3.244078 CGGAAGGGAAAAAGAAAAAGGGG 60.244 47.826 0.00 0.00 0.00 4.79
833 2772 3.714798 GGAAGGGAAAAAGAAAAAGGGGT 59.285 43.478 0.00 0.00 0.00 4.95
834 2773 4.202326 GGAAGGGAAAAAGAAAAAGGGGTC 60.202 45.833 0.00 0.00 0.00 4.46
835 2774 3.314693 AGGGAAAAAGAAAAAGGGGTCC 58.685 45.455 0.00 0.00 0.00 4.46
836 2775 3.051341 AGGGAAAAAGAAAAAGGGGTCCT 60.051 43.478 0.00 0.00 33.87 3.85
837 2776 3.071023 GGGAAAAAGAAAAAGGGGTCCTG 59.929 47.826 0.00 0.00 32.13 3.86
838 2777 3.494398 GGAAAAAGAAAAAGGGGTCCTGC 60.494 47.826 0.00 0.00 32.13 4.85
839 2778 2.775490 AAAGAAAAAGGGGTCCTGCT 57.225 45.000 0.00 0.00 32.13 4.24
840 2779 2.001076 AAGAAAAAGGGGTCCTGCTG 57.999 50.000 0.00 0.00 32.13 4.41
841 2780 0.540597 AGAAAAAGGGGTCCTGCTGC 60.541 55.000 0.00 0.00 32.13 5.25
842 2781 0.827507 GAAAAAGGGGTCCTGCTGCA 60.828 55.000 0.88 0.88 32.13 4.41
843 2782 1.115326 AAAAAGGGGTCCTGCTGCAC 61.115 55.000 0.00 0.00 32.13 4.57
844 2783 3.513750 AAAGGGGTCCTGCTGCACC 62.514 63.158 0.00 0.00 32.13 5.01
846 2785 4.729918 GGGGTCCTGCTGCACCAG 62.730 72.222 6.00 1.74 33.91 4.00
872 2813 0.179100 AACCATCCACGCATCTCTCG 60.179 55.000 0.00 0.00 0.00 4.04
921 2862 3.516586 TCTTCCCTACATTCTCCACACA 58.483 45.455 0.00 0.00 0.00 3.72
1175 3116 2.733218 CTGCGACGGCGTCAAGAA 60.733 61.111 35.62 17.06 44.10 2.52
1193 3134 2.588877 CCTCCATAACCAGGCGCG 60.589 66.667 0.00 0.00 0.00 6.86
1198 3139 1.961277 CATAACCAGGCGCGATCCC 60.961 63.158 12.10 0.26 0.00 3.85
1213 3154 1.971505 ATCCCAGAGCGATCGCCAAA 61.972 55.000 34.89 15.93 43.17 3.28
1214 3155 2.176273 CCCAGAGCGATCGCCAAAG 61.176 63.158 34.89 21.79 43.17 2.77
1315 3256 0.611200 CGGTGTCAACCTCCCATACA 59.389 55.000 0.00 0.00 45.17 2.29
1316 3257 1.674817 CGGTGTCAACCTCCCATACAC 60.675 57.143 0.00 0.00 45.17 2.90
1327 3268 3.033909 CTCCCATACACCATCAGTCTCA 58.966 50.000 0.00 0.00 0.00 3.27
1340 3281 2.360553 AGTCTCAACATCGACTGCAG 57.639 50.000 13.48 13.48 38.94 4.41
1380 3321 9.712359 CACATGCAAGCATATATATATGAACAC 57.288 33.333 29.13 17.81 42.05 3.32
1434 3387 3.587797 ATCAAATCTTTGCACTGCAGG 57.412 42.857 19.93 8.27 40.61 4.85
1443 3396 0.608856 TGCACTGCAGGGTGTAATGG 60.609 55.000 19.18 0.00 39.21 3.16
1525 3478 5.256626 AGCCTCTATCCCTATGTAGTATGGT 59.743 44.000 0.00 0.00 0.00 3.55
1572 3525 9.206690 ACTGAATATGAATAAGAACTCTCTCCA 57.793 33.333 0.00 0.00 0.00 3.86
1668 3621 5.556915 CACTCCCAGTGTTTATGGACTTTA 58.443 41.667 0.00 0.00 41.19 1.85
1693 3646 3.741344 ACATACAACTCGTTCTGTTCAGC 59.259 43.478 0.00 0.00 0.00 4.26
1707 3660 3.990092 TGTTCAGCGTGTGACTTATCTT 58.010 40.909 0.00 0.00 33.71 2.40
1758 3711 3.389983 TCCTTCCATCCGGTATTAGTTGG 59.610 47.826 0.00 0.00 0.00 3.77
1761 3714 1.202604 CCATCCGGTATTAGTTGGCGT 60.203 52.381 0.00 0.00 0.00 5.68
1927 7026 7.346471 TCTTTAATCTAGGTTCCCAAATCCAG 58.654 38.462 0.00 0.00 0.00 3.86
1948 7047 0.749091 AGCCTAATCAAGCGCATGCA 60.749 50.000 19.57 0.00 46.23 3.96
1952 7051 1.869132 CTAATCAAGCGCATGCAGCTA 59.131 47.619 28.44 18.62 45.31 3.32
1953 7052 0.661552 AATCAAGCGCATGCAGCTAG 59.338 50.000 28.44 10.69 45.31 3.42
1954 7053 1.783031 ATCAAGCGCATGCAGCTAGC 61.783 55.000 28.44 18.95 45.31 3.42
2091 7190 5.567534 GCGAATAAAACATGTTGTAGTGTGG 59.432 40.000 13.25 4.30 0.00 4.17
2112 7212 6.724893 TGGAGTTTCCATCAACGATAGATA 57.275 37.500 0.00 0.00 42.67 1.98
2125 7225 3.506455 ACGATAGATACCGTCTGGATTGG 59.494 47.826 0.00 0.00 37.83 3.16
2130 7230 5.730296 AGATACCGTCTGGATTGGATAAG 57.270 43.478 0.00 0.00 39.21 1.73
2135 7235 3.118775 CCGTCTGGATTGGATAAGTGTCA 60.119 47.826 0.00 0.00 37.49 3.58
2204 7356 1.804372 GCATGTCGCTCGGAAGATTCT 60.804 52.381 0.00 0.00 40.84 2.40
2241 7421 7.703298 TTTCTTAAAACGAATTCAGACGAGA 57.297 32.000 6.22 0.00 0.00 4.04
2271 7451 5.426689 TGATCTGCATAGGAGTTTCTTGT 57.573 39.130 0.00 0.00 0.00 3.16
2340 7530 2.195567 GCAGGTTGTGGCTTCAGCA 61.196 57.895 0.30 0.00 44.36 4.41
2395 7590 3.862063 GAATAGCCGCGCATTGCCG 62.862 63.158 8.75 7.72 42.08 5.69
2407 7602 1.135141 GCATTGCCGGCACAGAAATTA 60.135 47.619 32.95 13.05 0.00 1.40
2421 7616 6.402118 GCACAGAAATTACGCATGAACTTAGA 60.402 38.462 0.00 0.00 0.00 2.10
2422 7617 7.677276 GCACAGAAATTACGCATGAACTTAGAT 60.677 37.037 0.00 0.00 0.00 1.98
2423 7618 8.817100 CACAGAAATTACGCATGAACTTAGATA 58.183 33.333 0.00 0.00 0.00 1.98
2424 7619 9.547753 ACAGAAATTACGCATGAACTTAGATAT 57.452 29.630 0.00 0.00 0.00 1.63
2431 7626 7.568267 ACGCATGAACTTAGATATATTGTCG 57.432 36.000 0.00 0.00 0.00 4.35
2432 7627 7.368059 ACGCATGAACTTAGATATATTGTCGA 58.632 34.615 0.00 0.00 0.00 4.20
2433 7628 7.865889 ACGCATGAACTTAGATATATTGTCGAA 59.134 33.333 0.00 0.00 0.00 3.71
2434 7629 8.864024 CGCATGAACTTAGATATATTGTCGAAT 58.136 33.333 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.881273 TGTCAAGTTTATGTGTGTGAAGCT 59.119 37.500 0.00 0.00 0.00 3.74
9 10 8.677148 ATCTTTACTGTCAAGTTTATGTGTGT 57.323 30.769 2.01 0.00 37.88 3.72
27 28 2.158943 CGGACTTCCCCTGGATCTTTAC 60.159 54.545 0.00 0.00 0.00 2.01
57 58 6.713450 ACCTATCAAAACACCGTATGTCTTTT 59.287 34.615 0.00 0.00 42.31 2.27
67 68 3.528532 GGGTCTACCTATCAAAACACCG 58.471 50.000 0.00 0.00 35.85 4.94
107 109 0.548031 AATGGACATCGTGGCTCCAT 59.452 50.000 0.00 0.00 45.14 3.41
116 118 6.874134 CCTAACTAGGGATAAAATGGACATCG 59.126 42.308 0.00 0.00 39.86 3.84
156 158 1.069022 CCCTTTGTGTTGTGAGATGCG 60.069 52.381 0.00 0.00 0.00 4.73
197 199 7.335924 TGGATAAAGTACGAGATTTTGGAAAGG 59.664 37.037 0.00 0.00 0.00 3.11
219 221 2.093181 TCATTCGTCGTTGGGATTGGAT 60.093 45.455 0.00 0.00 0.00 3.41
238 240 5.280830 GGATCTTTTTGTTAGTAGGGGGTCA 60.281 44.000 0.00 0.00 0.00 4.02
274 276 2.035832 CGCCAGTTGGAAAGGTTTGATT 59.964 45.455 1.45 0.00 37.39 2.57
290 292 2.711922 AAGCCTACGGACTCGCCAG 61.712 63.158 0.00 0.00 40.63 4.85
401 404 9.206870 CTTCATATTAAAAACACATGGTTGCTT 57.793 29.630 0.00 0.00 40.35 3.91
444 447 0.033208 TCATCCATGGGACCAAAGGC 60.033 55.000 13.02 0.00 32.98 4.35
492 498 3.074675 AGTTTACCCACACACACACAA 57.925 42.857 0.00 0.00 0.00 3.33
529 540 7.050970 AGTGATGAACATAAGCGGAAGTATA 57.949 36.000 0.00 0.00 0.00 1.47
566 577 3.382546 GGCACTTCCTTCACATATGCAAT 59.617 43.478 1.58 0.00 33.24 3.56
583 595 5.763204 CCAGACGGTATTAAATATTGGCACT 59.237 40.000 0.00 0.00 0.00 4.40
602 618 7.054124 TGGGAGATGAATTTATAACACCAGAC 58.946 38.462 0.00 0.00 0.00 3.51
725 2664 5.393962 GTGTGTTTAGAACTGGATGCAATC 58.606 41.667 0.00 0.00 44.55 2.67
737 2676 9.295825 ACTGAAATCATAATGGTGTGTTTAGAA 57.704 29.630 0.00 0.00 0.00 2.10
752 2691 7.754851 AGCATGCATTATCACTGAAATCATA 57.245 32.000 21.98 0.00 0.00 2.15
791 2730 1.953231 GAAGGATGGCCCAAGCTTGC 61.953 60.000 21.43 10.66 39.73 4.01
794 2733 2.273449 CGAAGGATGGCCCAAGCT 59.727 61.111 0.00 0.00 39.73 3.74
838 2777 0.602638 TGGTTTAGTCGCTGGTGCAG 60.603 55.000 0.00 0.00 39.64 4.41
839 2778 0.036164 ATGGTTTAGTCGCTGGTGCA 59.964 50.000 0.00 0.00 39.64 4.57
840 2779 0.727398 GATGGTTTAGTCGCTGGTGC 59.273 55.000 0.00 0.00 0.00 5.01
841 2780 1.338674 TGGATGGTTTAGTCGCTGGTG 60.339 52.381 0.00 0.00 0.00 4.17
842 2781 0.981183 TGGATGGTTTAGTCGCTGGT 59.019 50.000 0.00 0.00 0.00 4.00
843 2782 1.369625 GTGGATGGTTTAGTCGCTGG 58.630 55.000 0.00 0.00 0.00 4.85
844 2783 0.999406 CGTGGATGGTTTAGTCGCTG 59.001 55.000 0.00 0.00 0.00 5.18
845 2784 0.739813 GCGTGGATGGTTTAGTCGCT 60.740 55.000 0.00 0.00 39.26 4.93
846 2785 1.017177 TGCGTGGATGGTTTAGTCGC 61.017 55.000 0.00 0.00 41.98 5.19
847 2786 1.593006 GATGCGTGGATGGTTTAGTCG 59.407 52.381 0.00 0.00 0.00 4.18
848 2787 2.866762 GAGATGCGTGGATGGTTTAGTC 59.133 50.000 0.00 0.00 0.00 2.59
849 2788 2.501723 AGAGATGCGTGGATGGTTTAGT 59.498 45.455 0.00 0.00 0.00 2.24
850 2789 3.126831 GAGAGATGCGTGGATGGTTTAG 58.873 50.000 0.00 0.00 0.00 1.85
851 2790 2.481276 CGAGAGATGCGTGGATGGTTTA 60.481 50.000 0.00 0.00 0.00 2.01
852 2791 1.740380 CGAGAGATGCGTGGATGGTTT 60.740 52.381 0.00 0.00 0.00 3.27
853 2792 0.179100 CGAGAGATGCGTGGATGGTT 60.179 55.000 0.00 0.00 0.00 3.67
872 2813 2.219458 GGCTTAAATAGGGGTTCGAGC 58.781 52.381 0.00 0.00 0.00 5.03
921 2862 1.620819 AGAGATGAGCAACTCGTGGTT 59.379 47.619 2.68 0.00 38.34 3.67
1163 3104 1.827399 ATGGAGGTTCTTGACGCCGT 61.827 55.000 0.00 0.00 0.00 5.68
1171 3112 1.065418 CGCCTGGTTATGGAGGTTCTT 60.065 52.381 0.00 0.00 0.00 2.52
1175 3116 2.590092 GCGCCTGGTTATGGAGGT 59.410 61.111 0.00 0.00 0.00 3.85
1193 3134 2.048690 GGCGATCGCTCTGGGATC 60.049 66.667 36.25 15.82 44.83 3.36
1198 3139 2.705826 GCTTTGGCGATCGCTCTG 59.294 61.111 36.25 24.09 41.60 3.35
1213 3154 3.360340 GAGGCAGTTGCAAGCGCT 61.360 61.111 2.64 2.64 44.36 5.92
1214 3155 3.198236 TTGAGGCAGTTGCAAGCGC 62.198 57.895 0.00 5.28 44.36 5.92
1315 3256 2.828520 AGTCGATGTTGAGACTGATGGT 59.171 45.455 0.00 0.00 45.03 3.55
1316 3257 3.516981 AGTCGATGTTGAGACTGATGG 57.483 47.619 0.00 0.00 45.03 3.51
1327 3268 0.952497 CACCTGCTGCAGTCGATGTT 60.952 55.000 26.41 0.89 0.00 2.71
1434 3387 0.878961 GGATCGTCGCCCATTACACC 60.879 60.000 0.00 0.00 0.00 4.16
1525 3478 8.217131 TCAGTATAAACTCGCATAACTAGTGA 57.783 34.615 0.00 0.00 31.97 3.41
1668 3621 6.090898 GCTGAACAGAACGAGTTGTATGTATT 59.909 38.462 5.97 0.00 32.14 1.89
1678 3631 0.102481 ACACGCTGAACAGAACGAGT 59.898 50.000 5.97 3.13 0.00 4.18
1693 3646 5.465390 TGAGGAAACAAAGATAAGTCACACG 59.535 40.000 0.00 0.00 0.00 4.49
1707 3660 0.179067 AGGCGAACGTGAGGAAACAA 60.179 50.000 0.00 0.00 0.00 2.83
1927 7026 0.317603 CATGCGCTTGATTAGGCTGC 60.318 55.000 17.78 0.00 0.00 5.25
1969 7068 2.391389 GGCGAAGAAAGTGCCTCCG 61.391 63.158 0.00 0.00 45.40 4.63
1999 7098 5.183713 TGAAGAAACACATGATTGATGGGTC 59.816 40.000 0.00 0.00 46.56 4.46
2042 7141 8.322091 GCCTCAAATTACCATACATCCTATAGT 58.678 37.037 0.00 0.00 0.00 2.12
2091 7190 5.629849 CGGTATCTATCGTTGATGGAAACTC 59.370 44.000 0.00 0.00 33.53 3.01
2107 7206 6.208797 CACTTATCCAATCCAGACGGTATCTA 59.791 42.308 0.00 0.00 35.15 1.98
2112 7212 2.838202 ACACTTATCCAATCCAGACGGT 59.162 45.455 0.00 0.00 0.00 4.83
2125 7225 4.806330 TCTTTCTGACGGTGACACTTATC 58.194 43.478 5.39 1.81 0.00 1.75
2130 7230 5.917541 TTAAATCTTTCTGACGGTGACAC 57.082 39.130 0.00 0.00 0.00 3.67
2135 7235 6.095021 GCCCTAAATTAAATCTTTCTGACGGT 59.905 38.462 0.00 0.00 0.00 4.83
2204 7356 8.172352 TCGTTTTAAGAAATTCTTTCCCATCA 57.828 30.769 13.89 0.00 40.54 3.07
2241 7421 6.436738 ACTCCTATGCAGATCATCATCTTT 57.563 37.500 0.00 0.00 37.25 2.52
2271 7451 2.426024 GCCGATGGAGCCGTAGATTATA 59.574 50.000 0.00 0.00 0.00 0.98
2395 7590 3.119849 AGTTCATGCGTAATTTCTGTGCC 60.120 43.478 0.00 0.00 0.00 5.01
2396 7591 4.083581 AGTTCATGCGTAATTTCTGTGC 57.916 40.909 0.00 0.00 0.00 4.57
2407 7602 7.368059 TCGACAATATATCTAAGTTCATGCGT 58.632 34.615 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.