Multiple sequence alignment - TraesCS5B01G145900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G145900 chr5B 100.000 3117 0 0 1 3117 273148794 273145678 0.000000e+00 5757.0
1 TraesCS5B01G145900 chr5B 98.333 420 5 2 51 470 456513731 456513314 0.000000e+00 736.0
2 TraesCS5B01G145900 chr5B 94.750 400 21 0 58 457 688472732 688472333 9.490000e-175 623.0
3 TraesCS5B01G145900 chr5A 95.061 1073 37 10 458 1521 324481133 324480068 0.000000e+00 1674.0
4 TraesCS5B01G145900 chr5A 95.918 980 27 4 554 1521 324404360 324403382 0.000000e+00 1576.0
5 TraesCS5B01G145900 chr5A 92.317 820 34 10 1515 2325 324403332 324402533 0.000000e+00 1138.0
6 TraesCS5B01G145900 chr5A 86.667 630 37 22 1515 2116 324480018 324479408 0.000000e+00 654.0
7 TraesCS5B01G145900 chr5A 87.931 116 12 2 2355 2469 324402533 324402419 5.420000e-28 135.0
8 TraesCS5B01G145900 chr5A 97.561 41 1 0 518 558 324404910 324404870 1.550000e-08 71.3
9 TraesCS5B01G145900 chr5D 93.809 1066 38 8 460 1515 232010739 232011786 0.000000e+00 1578.0
10 TraesCS5B01G145900 chr5D 89.843 827 39 15 1515 2322 232011851 232012651 0.000000e+00 1020.0
11 TraesCS5B01G145900 chr5D 91.304 115 10 0 2355 2469 232012654 232012768 1.160000e-34 158.0
12 TraesCS5B01G145900 chr7A 99.693 651 2 0 2467 3117 700819804 700820454 0.000000e+00 1192.0
13 TraesCS5B01G145900 chr7A 94.737 57 3 0 1 57 722026211 722026155 4.280000e-14 89.8
14 TraesCS5B01G145900 chrUn 97.603 459 9 1 1 457 200764679 200765137 0.000000e+00 785.0
15 TraesCS5B01G145900 chrUn 98.280 407 7 0 51 457 200641428 200641022 0.000000e+00 713.0
16 TraesCS5B01G145900 chrUn 98.280 407 7 0 51 457 200655014 200654608 0.000000e+00 713.0
17 TraesCS5B01G145900 chrUn 98.280 407 7 0 51 457 234330816 234330410 0.000000e+00 713.0
18 TraesCS5B01G145900 chrUn 97.789 407 9 0 51 457 308764588 308764994 0.000000e+00 702.0
19 TraesCS5B01G145900 chrUn 94.271 384 22 0 74 457 331637111 331637494 3.460000e-164 588.0
20 TraesCS5B01G145900 chrUn 98.039 51 1 0 1 51 183177665 183177715 4.280000e-14 89.8
21 TraesCS5B01G145900 chr4B 99.017 407 4 0 51 457 624555736 624555330 0.000000e+00 730.0
22 TraesCS5B01G145900 chr6B 98.526 407 6 0 51 457 8728201 8728607 0.000000e+00 719.0
23 TraesCS5B01G145900 chr1B 98.049 410 8 0 51 460 642623603 642623194 0.000000e+00 713.0
24 TraesCS5B01G145900 chr1B 94.737 57 3 0 1 57 642623688 642623632 4.280000e-14 89.8
25 TraesCS5B01G145900 chr7B 94.748 457 21 3 1 457 648422715 648423168 0.000000e+00 708.0
26 TraesCS5B01G145900 chr2D 93.472 337 17 3 2785 3117 488237856 488238191 2.160000e-136 496.0
27 TraesCS5B01G145900 chr2D 88.608 237 9 9 2544 2763 488237640 488237875 3.960000e-69 272.0
28 TraesCS5B01G145900 chr2A 98.039 51 1 0 1 51 459135374 459135424 4.280000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G145900 chr5B 273145678 273148794 3116 True 5757.000000 5757 100.00000 1 3117 1 chr5B.!!$R1 3116
1 TraesCS5B01G145900 chr5A 324479408 324481133 1725 True 1164.000000 1674 90.86400 458 2116 2 chr5A.!!$R2 1658
2 TraesCS5B01G145900 chr5A 324402419 324404910 2491 True 730.075000 1576 93.43175 518 2469 4 chr5A.!!$R1 1951
3 TraesCS5B01G145900 chr5D 232010739 232012768 2029 False 918.666667 1578 91.65200 460 2469 3 chr5D.!!$F1 2009
4 TraesCS5B01G145900 chr7A 700819804 700820454 650 False 1192.000000 1192 99.69300 2467 3117 1 chr7A.!!$F1 650
5 TraesCS5B01G145900 chr2D 488237640 488238191 551 False 384.000000 496 91.04000 2544 3117 2 chr2D.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 0.030908 ATAGCTCTGACGCCGTTAGC 59.969 55.0 3.88 7.99 38.52 3.09 F
456 457 0.035439 ATGGCCTTGTTCCGGTAGTG 60.035 55.0 3.32 0.00 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 2776 0.256752 TGCTGGATGGTGCAATAGCT 59.743 50.0 0.00 0.00 42.74 3.32 R
2342 3003 0.037590 TTTCCCTAACCTGCATGCGT 59.962 50.0 14.09 2.34 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 9.550406 AAAAATATGTACCGAAAATAGATCCGA 57.450 29.630 0.00 0.00 0.00 4.55
60 61 8.530269 AAATATGTACCGAAAATAGATCCGAC 57.470 34.615 0.00 0.00 0.00 4.79
61 62 4.311816 TGTACCGAAAATAGATCCGACC 57.688 45.455 0.00 0.00 0.00 4.79
62 63 3.700539 TGTACCGAAAATAGATCCGACCA 59.299 43.478 0.00 0.00 0.00 4.02
63 64 3.454371 ACCGAAAATAGATCCGACCAG 57.546 47.619 0.00 0.00 0.00 4.00
64 65 2.135933 CCGAAAATAGATCCGACCAGC 58.864 52.381 0.00 0.00 0.00 4.85
65 66 1.787155 CGAAAATAGATCCGACCAGCG 59.213 52.381 0.00 0.00 40.47 5.18
66 67 2.798499 CGAAAATAGATCCGACCAGCGT 60.798 50.000 0.00 0.00 38.67 5.07
67 68 2.225068 AAATAGATCCGACCAGCGTG 57.775 50.000 0.00 0.00 38.67 5.34
68 69 0.249489 AATAGATCCGACCAGCGTGC 60.249 55.000 0.00 0.00 38.67 5.34
69 70 2.088674 ATAGATCCGACCAGCGTGCC 62.089 60.000 0.00 0.00 38.67 5.01
81 82 4.794439 CGTGCCGCGGATCACTGA 62.794 66.667 33.48 0.00 36.85 3.41
82 83 3.188786 GTGCCGCGGATCACTGAC 61.189 66.667 33.48 9.04 0.00 3.51
83 84 4.794439 TGCCGCGGATCACTGACG 62.794 66.667 33.48 0.00 0.00 4.35
84 85 4.796231 GCCGCGGATCACTGACGT 62.796 66.667 33.48 0.00 0.00 4.34
85 86 2.880879 CCGCGGATCACTGACGTG 60.881 66.667 24.07 0.00 42.59 4.49
86 87 2.880879 CGCGGATCACTGACGTGG 60.881 66.667 0.00 0.00 41.53 4.94
87 88 3.188786 GCGGATCACTGACGTGGC 61.189 66.667 0.00 0.00 41.53 5.01
88 89 2.261361 CGGATCACTGACGTGGCA 59.739 61.111 0.00 0.00 41.53 4.92
89 90 1.807165 CGGATCACTGACGTGGCAG 60.807 63.158 0.00 0.00 41.53 4.85
90 91 1.591703 GGATCACTGACGTGGCAGA 59.408 57.895 10.26 0.00 41.53 4.26
91 92 0.176680 GGATCACTGACGTGGCAGAT 59.823 55.000 10.26 0.97 41.53 2.90
92 93 1.409064 GGATCACTGACGTGGCAGATA 59.591 52.381 10.26 0.00 41.53 1.98
93 94 2.036475 GGATCACTGACGTGGCAGATAT 59.964 50.000 10.26 2.01 41.53 1.63
94 95 2.584492 TCACTGACGTGGCAGATATG 57.416 50.000 10.26 0.00 41.53 1.78
95 96 0.933097 CACTGACGTGGCAGATATGC 59.067 55.000 10.26 3.01 39.20 3.14
122 123 2.028190 CCGTCGGCATAGGCTCTG 59.972 66.667 0.00 0.00 40.87 3.35
123 124 2.659897 CGTCGGCATAGGCTCTGC 60.660 66.667 15.84 15.84 40.87 4.26
124 125 2.501128 GTCGGCATAGGCTCTGCA 59.499 61.111 23.88 4.15 41.47 4.41
125 126 1.070445 GTCGGCATAGGCTCTGCAT 59.930 57.895 23.88 0.00 41.47 3.96
126 127 1.070275 TCGGCATAGGCTCTGCATG 59.930 57.895 23.88 16.19 41.47 4.06
127 128 1.964891 CGGCATAGGCTCTGCATGG 60.965 63.158 23.88 10.47 41.47 3.66
128 129 1.150081 GGCATAGGCTCTGCATGGT 59.850 57.895 23.88 0.00 41.47 3.55
129 130 1.170919 GGCATAGGCTCTGCATGGTG 61.171 60.000 23.88 0.00 41.47 4.17
130 131 1.793134 GCATAGGCTCTGCATGGTGC 61.793 60.000 18.78 0.00 39.65 5.01
140 141 2.903855 CATGGTGCGGCCTGGATC 60.904 66.667 0.00 0.00 38.35 3.36
141 142 3.410628 ATGGTGCGGCCTGGATCA 61.411 61.111 0.00 2.40 38.35 2.92
142 143 2.982643 ATGGTGCGGCCTGGATCAA 61.983 57.895 0.00 0.00 30.44 2.57
143 144 2.124151 GGTGCGGCCTGGATCAAT 60.124 61.111 0.00 0.00 0.00 2.57
144 145 2.484062 GGTGCGGCCTGGATCAATG 61.484 63.158 0.00 0.00 0.00 2.82
145 146 1.451927 GTGCGGCCTGGATCAATGA 60.452 57.895 0.00 0.00 0.00 2.57
146 147 1.451927 TGCGGCCTGGATCAATGAC 60.452 57.895 0.00 0.00 0.00 3.06
147 148 2.537560 GCGGCCTGGATCAATGACG 61.538 63.158 0.00 0.00 0.00 4.35
148 149 1.153369 CGGCCTGGATCAATGACGT 60.153 57.895 0.00 0.00 0.00 4.34
149 150 1.431488 CGGCCTGGATCAATGACGTG 61.431 60.000 0.00 0.00 0.00 4.49
150 151 1.097547 GGCCTGGATCAATGACGTGG 61.098 60.000 0.00 0.00 0.00 4.94
151 152 1.718757 GCCTGGATCAATGACGTGGC 61.719 60.000 0.00 0.00 0.00 5.01
152 153 1.097547 CCTGGATCAATGACGTGGCC 61.098 60.000 0.00 0.00 0.00 5.36
153 154 0.107508 CTGGATCAATGACGTGGCCT 60.108 55.000 3.32 0.00 0.00 5.19
154 155 0.392863 TGGATCAATGACGTGGCCTG 60.393 55.000 3.32 0.00 0.00 4.85
155 156 1.718757 GGATCAATGACGTGGCCTGC 61.719 60.000 3.32 0.00 0.00 4.85
156 157 2.040213 GATCAATGACGTGGCCTGCG 62.040 60.000 16.56 16.56 0.00 5.18
157 158 3.803082 CAATGACGTGGCCTGCGG 61.803 66.667 20.78 3.71 0.00 5.69
158 159 4.015406 AATGACGTGGCCTGCGGA 62.015 61.111 20.78 9.96 0.00 5.54
159 160 4.760047 ATGACGTGGCCTGCGGAC 62.760 66.667 20.78 15.18 0.00 4.79
163 164 3.849951 CGTGGCCTGCGGACCTAT 61.850 66.667 3.32 0.00 0.00 2.57
164 165 2.203070 GTGGCCTGCGGACCTATG 60.203 66.667 3.32 0.00 0.00 2.23
165 166 4.175337 TGGCCTGCGGACCTATGC 62.175 66.667 3.32 0.00 0.00 3.14
166 167 4.937431 GGCCTGCGGACCTATGCC 62.937 72.222 0.00 0.00 0.00 4.40
202 203 3.120105 CCGTCGGCATAGCTCTGA 58.880 61.111 2.78 0.00 0.00 3.27
203 204 1.299468 CCGTCGGCATAGCTCTGAC 60.299 63.158 2.78 0.00 0.00 3.51
206 207 2.659897 CGGCATAGCTCTGACGCC 60.660 66.667 14.90 7.96 41.40 5.68
207 208 2.659897 GGCATAGCTCTGACGCCG 60.660 66.667 2.78 0.00 32.14 6.46
208 209 2.105128 GCATAGCTCTGACGCCGT 59.895 61.111 2.78 0.00 0.00 5.68
209 210 1.519455 GCATAGCTCTGACGCCGTT 60.519 57.895 2.78 0.00 0.00 4.44
210 211 0.248907 GCATAGCTCTGACGCCGTTA 60.249 55.000 2.78 0.00 0.00 3.18
211 212 1.759994 CATAGCTCTGACGCCGTTAG 58.240 55.000 2.14 2.14 0.00 2.34
212 213 0.030908 ATAGCTCTGACGCCGTTAGC 59.969 55.000 3.88 7.99 38.52 3.09
213 214 2.001361 TAGCTCTGACGCCGTTAGCC 62.001 60.000 14.06 4.52 38.78 3.93
214 215 2.571757 CTCTGACGCCGTTAGCCA 59.428 61.111 3.88 0.00 38.78 4.75
215 216 1.517257 CTCTGACGCCGTTAGCCAG 60.517 63.158 3.88 0.57 38.78 4.85
216 217 2.509336 CTGACGCCGTTAGCCAGG 60.509 66.667 0.00 0.00 38.78 4.45
217 218 4.077184 TGACGCCGTTAGCCAGGG 62.077 66.667 0.00 0.00 38.78 4.45
218 219 4.832608 GACGCCGTTAGCCAGGGG 62.833 72.222 0.00 0.00 44.81 4.79
221 222 4.796495 GCCGTTAGCCAGGGGGTG 62.796 72.222 0.00 0.00 34.28 4.61
240 241 4.849310 CCGGGCCCCACGTGTATG 62.849 72.222 18.66 3.27 0.00 2.39
244 245 4.460683 GCCCCACGTGTATGCCGA 62.461 66.667 15.65 0.00 0.00 5.54
245 246 2.510691 CCCCACGTGTATGCCGAC 60.511 66.667 15.65 0.00 0.00 4.79
246 247 2.883730 CCCACGTGTATGCCGACG 60.884 66.667 15.65 0.00 41.41 5.12
247 248 2.883730 CCACGTGTATGCCGACGG 60.884 66.667 15.65 10.29 39.94 4.79
257 258 4.338327 GCCGACGGCCTATGTAAG 57.662 61.111 28.74 0.00 44.06 2.34
258 259 1.954651 GCCGACGGCCTATGTAAGC 60.955 63.158 28.74 0.00 44.06 3.09
259 260 1.300697 CCGACGGCCTATGTAAGCC 60.301 63.158 0.00 0.00 46.17 4.35
263 264 4.338327 GGCCTATGTAAGCCGACG 57.662 61.111 0.00 0.00 39.87 5.12
264 265 1.300697 GGCCTATGTAAGCCGACGG 60.301 63.158 10.29 10.29 39.87 4.79
265 266 1.300697 GCCTATGTAAGCCGACGGG 60.301 63.158 17.22 0.00 0.00 5.28
266 267 1.741327 GCCTATGTAAGCCGACGGGA 61.741 60.000 17.22 0.00 34.06 5.14
267 268 0.314302 CCTATGTAAGCCGACGGGAG 59.686 60.000 17.22 0.00 34.06 4.30
268 269 0.318784 CTATGTAAGCCGACGGGAGC 60.319 60.000 17.22 0.56 34.06 4.70
269 270 0.754217 TATGTAAGCCGACGGGAGCT 60.754 55.000 17.22 3.34 42.40 4.09
270 271 2.202756 GTAAGCCGACGGGAGCTG 60.203 66.667 17.22 0.00 39.87 4.24
271 272 2.678934 TAAGCCGACGGGAGCTGT 60.679 61.111 17.22 1.06 39.87 4.40
272 273 2.707849 TAAGCCGACGGGAGCTGTC 61.708 63.158 17.22 0.00 39.87 3.51
286 287 1.337821 GCTGTCGGCGTATATGTAGC 58.662 55.000 6.85 4.08 0.00 3.58
287 288 1.068472 GCTGTCGGCGTATATGTAGCT 60.068 52.381 6.85 0.00 0.00 3.32
288 289 2.161012 GCTGTCGGCGTATATGTAGCTA 59.839 50.000 6.85 0.00 0.00 3.32
289 290 3.728268 GCTGTCGGCGTATATGTAGCTAG 60.728 52.174 6.85 0.00 0.00 3.42
290 291 2.745821 TGTCGGCGTATATGTAGCTAGG 59.254 50.000 6.85 0.00 0.00 3.02
291 292 1.741706 TCGGCGTATATGTAGCTAGGC 59.258 52.381 6.85 0.00 0.00 3.93
292 293 1.202268 CGGCGTATATGTAGCTAGGCC 60.202 57.143 0.00 0.00 42.62 5.19
293 294 1.202268 GGCGTATATGTAGCTAGGCCG 60.202 57.143 0.00 0.00 38.63 6.13
294 295 1.741706 GCGTATATGTAGCTAGGCCGA 59.258 52.381 0.00 0.00 0.00 5.54
295 296 2.477525 GCGTATATGTAGCTAGGCCGAC 60.478 54.545 0.00 0.00 0.00 4.79
296 297 2.222976 CGTATATGTAGCTAGGCCGACG 60.223 54.545 0.00 0.00 0.00 5.12
297 298 1.174783 ATATGTAGCTAGGCCGACGG 58.825 55.000 10.29 10.29 0.00 4.79
307 308 3.642755 GCCGACGGCCATTCTATG 58.357 61.111 28.74 0.00 44.06 2.23
308 309 2.607892 GCCGACGGCCATTCTATGC 61.608 63.158 28.74 0.00 44.06 3.14
309 310 1.961277 CCGACGGCCATTCTATGCC 60.961 63.158 2.24 0.00 44.41 4.40
313 314 3.642755 GGCCATTCTATGCCGACG 58.357 61.111 0.00 0.00 38.00 5.12
314 315 1.961277 GGCCATTCTATGCCGACGG 60.961 63.158 10.29 10.29 38.00 4.79
315 316 1.961277 GCCATTCTATGCCGACGGG 60.961 63.158 17.22 0.00 0.00 5.28
316 317 1.445942 CCATTCTATGCCGACGGGT 59.554 57.895 17.22 0.00 34.97 5.28
317 318 0.677288 CCATTCTATGCCGACGGGTA 59.323 55.000 17.22 0.00 34.97 3.69
318 319 1.604693 CCATTCTATGCCGACGGGTAC 60.605 57.143 17.22 0.00 34.97 3.34
331 332 2.423388 GGGTACCGTCGGCTTATCT 58.577 57.895 12.28 0.00 40.86 1.98
332 333 0.313357 GGGTACCGTCGGCTTATCTC 59.687 60.000 12.28 0.00 40.86 2.75
333 334 1.316651 GGTACCGTCGGCTTATCTCT 58.683 55.000 12.28 0.00 0.00 3.10
334 335 1.001597 GGTACCGTCGGCTTATCTCTG 60.002 57.143 12.28 0.00 0.00 3.35
335 336 0.666913 TACCGTCGGCTTATCTCTGC 59.333 55.000 12.28 0.00 0.00 4.26
336 337 1.658717 CCGTCGGCTTATCTCTGCG 60.659 63.158 0.00 0.00 0.00 5.18
337 338 1.064296 CGTCGGCTTATCTCTGCGT 59.936 57.895 0.00 0.00 0.00 5.24
338 339 0.306840 CGTCGGCTTATCTCTGCGTA 59.693 55.000 0.00 0.00 0.00 4.42
339 340 1.268386 CGTCGGCTTATCTCTGCGTAA 60.268 52.381 0.00 0.00 0.00 3.18
340 341 2.117910 GTCGGCTTATCTCTGCGTAAC 58.882 52.381 0.00 0.00 0.00 2.50
341 342 1.066605 TCGGCTTATCTCTGCGTAACC 59.933 52.381 0.00 0.00 0.00 2.85
342 343 1.867166 GGCTTATCTCTGCGTAACCC 58.133 55.000 0.00 0.00 0.00 4.11
343 344 1.138266 GGCTTATCTCTGCGTAACCCA 59.862 52.381 0.00 0.00 0.00 4.51
344 345 2.419574 GGCTTATCTCTGCGTAACCCAA 60.420 50.000 0.00 0.00 0.00 4.12
345 346 2.608090 GCTTATCTCTGCGTAACCCAAC 59.392 50.000 0.00 0.00 0.00 3.77
346 347 2.572191 TATCTCTGCGTAACCCAACG 57.428 50.000 0.00 0.00 45.58 4.10
347 348 0.108329 ATCTCTGCGTAACCCAACGG 60.108 55.000 0.00 0.00 43.06 4.44
348 349 2.357760 TCTGCGTAACCCAACGGC 60.358 61.111 0.00 0.00 43.06 5.68
349 350 3.428282 CTGCGTAACCCAACGGCC 61.428 66.667 0.00 0.00 43.06 6.13
350 351 3.894547 CTGCGTAACCCAACGGCCT 62.895 63.158 0.00 0.00 43.06 5.19
351 352 2.670592 GCGTAACCCAACGGCCTT 60.671 61.111 0.00 0.00 43.06 4.35
352 353 2.263021 GCGTAACCCAACGGCCTTT 61.263 57.895 0.00 0.00 43.06 3.11
353 354 1.577421 CGTAACCCAACGGCCTTTG 59.423 57.895 14.89 14.89 39.19 2.77
354 355 1.167781 CGTAACCCAACGGCCTTTGT 61.168 55.000 19.62 5.14 39.19 2.83
355 356 1.877258 CGTAACCCAACGGCCTTTGTA 60.877 52.381 19.62 4.18 39.19 2.41
356 357 1.536766 GTAACCCAACGGCCTTTGTAC 59.463 52.381 19.62 12.13 0.00 2.90
357 358 1.167781 AACCCAACGGCCTTTGTACG 61.168 55.000 19.62 9.69 0.00 3.67
358 359 2.559330 CCAACGGCCTTTGTACGC 59.441 61.111 19.62 0.00 0.00 4.42
359 360 2.559330 CAACGGCCTTTGTACGCC 59.441 61.111 13.69 0.00 42.05 5.68
364 365 3.484547 GCCTTTGTACGCCGACGG 61.485 66.667 10.29 10.29 46.04 4.79
365 366 3.484547 CCTTTGTACGCCGACGGC 61.485 66.667 29.10 29.10 46.75 5.68
375 376 4.760047 CCGACGGCCAGAACCAGG 62.760 72.222 2.24 0.00 0.00 4.45
382 383 2.046892 CCAGAACCAGGCTGTCGG 60.047 66.667 14.43 6.04 0.00 4.79
383 384 2.743928 CAGAACCAGGCTGTCGGC 60.744 66.667 14.43 0.00 40.90 5.54
384 385 3.241530 AGAACCAGGCTGTCGGCA 61.242 61.111 14.43 0.00 44.01 5.69
385 386 2.045926 GAACCAGGCTGTCGGCAT 60.046 61.111 14.43 0.00 44.01 4.40
386 387 1.220749 GAACCAGGCTGTCGGCATA 59.779 57.895 14.43 0.00 44.01 3.14
387 388 0.179045 GAACCAGGCTGTCGGCATAT 60.179 55.000 14.43 0.00 44.01 1.78
388 389 0.179045 AACCAGGCTGTCGGCATATC 60.179 55.000 14.43 0.00 44.01 1.63
389 390 1.050988 ACCAGGCTGTCGGCATATCT 61.051 55.000 14.43 0.00 44.01 1.98
390 391 0.320247 CCAGGCTGTCGGCATATCTC 60.320 60.000 14.43 0.00 44.01 2.75
391 392 0.320247 CAGGCTGTCGGCATATCTCC 60.320 60.000 6.28 0.00 44.01 3.71
392 393 1.004440 GGCTGTCGGCATATCTCCC 60.004 63.158 5.89 0.00 44.01 4.30
393 394 1.748403 GCTGTCGGCATATCTCCCA 59.252 57.895 0.00 0.00 41.35 4.37
394 395 0.320247 GCTGTCGGCATATCTCCCAG 60.320 60.000 0.00 0.00 41.35 4.45
395 396 0.319728 CTGTCGGCATATCTCCCAGG 59.680 60.000 0.00 0.00 0.00 4.45
396 397 0.105709 TGTCGGCATATCTCCCAGGA 60.106 55.000 0.00 0.00 0.00 3.86
397 398 1.048601 GTCGGCATATCTCCCAGGAA 58.951 55.000 0.00 0.00 0.00 3.36
398 399 1.001406 GTCGGCATATCTCCCAGGAAG 59.999 57.143 0.00 0.00 0.00 3.46
399 400 0.321122 CGGCATATCTCCCAGGAAGC 60.321 60.000 0.00 0.00 0.00 3.86
400 401 0.037447 GGCATATCTCCCAGGAAGCC 59.963 60.000 0.00 0.00 0.00 4.35
401 402 0.321122 GCATATCTCCCAGGAAGCCG 60.321 60.000 0.00 0.00 0.00 5.52
402 403 1.342074 CATATCTCCCAGGAAGCCGA 58.658 55.000 0.00 0.00 0.00 5.54
403 404 1.001406 CATATCTCCCAGGAAGCCGAC 59.999 57.143 0.00 0.00 0.00 4.79
404 405 1.107538 TATCTCCCAGGAAGCCGACG 61.108 60.000 0.00 0.00 0.00 5.12
405 406 2.856039 ATCTCCCAGGAAGCCGACGA 62.856 60.000 0.00 0.00 0.00 4.20
406 407 3.068691 TCCCAGGAAGCCGACGAG 61.069 66.667 0.00 0.00 0.00 4.18
407 408 4.148825 CCCAGGAAGCCGACGAGG 62.149 72.222 0.00 0.00 44.97 4.63
408 409 4.148825 CCAGGAAGCCGACGAGGG 62.149 72.222 0.00 0.00 41.48 4.30
426 427 4.550395 CCGTCGGCATTGTTTTGG 57.450 55.556 0.00 0.00 0.00 3.28
427 428 1.732683 CCGTCGGCATTGTTTTGGC 60.733 57.895 0.00 0.00 38.71 4.52
428 429 1.732683 CGTCGGCATTGTTTTGGCC 60.733 57.895 0.00 0.00 44.27 5.36
431 432 4.260194 GGCATTGTTTTGGCCGTC 57.740 55.556 0.00 0.00 38.04 4.79
432 433 1.732683 GGCATTGTTTTGGCCGTCG 60.733 57.895 0.00 0.00 38.04 5.12
433 434 1.732683 GCATTGTTTTGGCCGTCGG 60.733 57.895 6.99 6.99 0.00 4.79
434 435 1.080839 CATTGTTTTGGCCGTCGGG 60.081 57.895 14.38 0.00 0.00 5.14
435 436 2.272447 ATTGTTTTGGCCGTCGGGG 61.272 57.895 14.38 0.00 39.58 5.73
436 437 2.987355 ATTGTTTTGGCCGTCGGGGT 62.987 55.000 14.38 0.00 38.44 4.95
437 438 2.032376 GTTTTGGCCGTCGGGGTA 59.968 61.111 14.38 0.00 38.44 3.69
438 439 1.377594 GTTTTGGCCGTCGGGGTAT 60.378 57.895 14.38 0.00 38.44 2.73
439 440 1.377463 TTTTGGCCGTCGGGGTATG 60.377 57.895 14.38 0.00 38.44 2.39
440 441 2.823376 TTTTGGCCGTCGGGGTATGG 62.823 60.000 14.38 0.00 38.44 2.74
444 445 3.476419 CCGTCGGGGTATGGCCTT 61.476 66.667 3.32 0.00 37.43 4.35
445 446 2.203015 CGTCGGGGTATGGCCTTG 60.203 66.667 3.32 0.00 37.43 3.61
446 447 2.995547 GTCGGGGTATGGCCTTGT 59.004 61.111 3.32 0.00 37.43 3.16
447 448 1.301954 GTCGGGGTATGGCCTTGTT 59.698 57.895 3.32 0.00 37.43 2.83
448 449 0.746923 GTCGGGGTATGGCCTTGTTC 60.747 60.000 3.32 0.00 37.43 3.18
449 450 1.453197 CGGGGTATGGCCTTGTTCC 60.453 63.158 3.32 2.64 37.43 3.62
450 451 1.453197 GGGGTATGGCCTTGTTCCG 60.453 63.158 3.32 0.00 37.43 4.30
451 452 1.453197 GGGTATGGCCTTGTTCCGG 60.453 63.158 3.32 0.00 37.43 5.14
452 453 1.301954 GGTATGGCCTTGTTCCGGT 59.698 57.895 3.32 0.00 0.00 5.28
453 454 0.542805 GGTATGGCCTTGTTCCGGTA 59.457 55.000 3.32 0.00 0.00 4.02
454 455 1.474498 GGTATGGCCTTGTTCCGGTAG 60.474 57.143 3.32 0.00 0.00 3.18
455 456 1.208776 GTATGGCCTTGTTCCGGTAGT 59.791 52.381 3.32 0.00 0.00 2.73
456 457 0.035439 ATGGCCTTGTTCCGGTAGTG 60.035 55.000 3.32 0.00 0.00 2.74
467 468 0.736053 CCGGTAGTGAGAGAGCAGAC 59.264 60.000 0.00 0.00 0.00 3.51
470 471 1.679336 GGTAGTGAGAGAGCAGACGGA 60.679 57.143 0.00 0.00 0.00 4.69
480 481 2.301870 AGAGCAGACGGAAAACATGGTA 59.698 45.455 0.00 0.00 0.00 3.25
485 486 4.096382 GCAGACGGAAAACATGGTATGATT 59.904 41.667 0.00 0.00 0.00 2.57
507 508 2.440409 AGTGATCAAATGGGTGACAGC 58.560 47.619 0.00 0.00 0.00 4.40
516 517 3.357079 GGTGACAGCGGCAACAGG 61.357 66.667 1.45 0.00 0.00 4.00
682 1205 4.976116 CAGTAACTTTTCTTCCCGCAAAAG 59.024 41.667 3.80 3.80 42.79 2.27
689 1212 4.457834 TTCTTCCCGCAAAAGAAAAACA 57.542 36.364 3.42 0.00 39.22 2.83
730 1265 4.081406 AGCAAAGAGACACATGCCAATTA 58.919 39.130 0.00 0.00 39.59 1.40
854 1389 4.112634 CAATTGCTCAATCAATCCTGCTG 58.887 43.478 0.00 0.00 35.77 4.41
951 1495 2.625737 CACACTCATCTGATCACCCAC 58.374 52.381 0.00 0.00 0.00 4.61
960 1504 1.342819 CTGATCACCCACTAGCTAGCC 59.657 57.143 20.91 0.00 0.00 3.93
1455 2000 3.130869 TCTTGTGCATATTTCCATGTGGC 59.869 43.478 0.00 0.00 34.44 5.01
1478 2023 3.864003 GCTACTCCATAACCGTCTGTTTC 59.136 47.826 0.00 0.00 38.42 2.78
1532 2142 5.951747 ACCAGGCAATACAAACAATATGACT 59.048 36.000 0.00 0.00 0.00 3.41
1542 2152 6.758254 ACAAACAATATGACTCCCCAAAAAG 58.242 36.000 0.00 0.00 0.00 2.27
1579 2192 3.106242 ACTCATGAGCAAACACGTACA 57.894 42.857 22.83 0.00 0.00 2.90
1580 2193 3.462982 ACTCATGAGCAAACACGTACAA 58.537 40.909 22.83 0.00 0.00 2.41
1588 2201 4.562082 AGCAAACACGTACAAGCATAGTA 58.438 39.130 0.00 0.00 0.00 1.82
1605 2218 9.771534 AAGCATAGTATTTTCTTAAGAGCTAGG 57.228 33.333 5.12 7.54 0.00 3.02
1606 2219 9.148879 AGCATAGTATTTTCTTAAGAGCTAGGA 57.851 33.333 5.12 0.00 0.00 2.94
1607 2220 9.418045 GCATAGTATTTTCTTAAGAGCTAGGAG 57.582 37.037 5.12 0.00 0.00 3.69
1616 2229 7.448915 TCTTAAGAGCTAGGAGTAGGAAGTA 57.551 40.000 0.00 0.00 0.00 2.24
1704 2317 1.086696 GCATGTTACATCTGCCGTGT 58.913 50.000 0.00 0.00 0.00 4.49
1797 2410 4.183686 ATGCATGGACGCGCTTGC 62.184 61.111 5.73 11.76 35.67 4.01
1838 2451 3.375782 TGATGGAGTGCTCATACGATG 57.624 47.619 1.41 0.00 0.00 3.84
2004 2661 1.205893 CTCCTTGCTGTACTCCAGTCC 59.794 57.143 0.00 0.00 43.55 3.85
2021 2680 1.019673 TCCTAGCCGATGTGTACGTC 58.980 55.000 0.00 0.00 0.00 4.34
2109 2770 3.065786 GCATGGATGTTCAGGTATGTGTG 59.934 47.826 0.00 0.00 0.00 3.82
2110 2771 4.264253 CATGGATGTTCAGGTATGTGTGT 58.736 43.478 0.00 0.00 0.00 3.72
2111 2772 5.427378 CATGGATGTTCAGGTATGTGTGTA 58.573 41.667 0.00 0.00 0.00 2.90
2112 2773 4.827692 TGGATGTTCAGGTATGTGTGTAC 58.172 43.478 0.00 0.00 0.00 2.90
2113 2774 4.189231 GGATGTTCAGGTATGTGTGTACC 58.811 47.826 0.00 0.00 43.65 3.34
2126 2787 3.195661 GTGTGTACCTAGCTATTGCACC 58.804 50.000 16.25 8.04 42.74 5.01
2288 2949 9.769093 GATTTTGTACTCCACAACACAATATAC 57.231 33.333 0.00 0.00 46.80 1.47
2289 2950 7.675962 TTTGTACTCCACAACACAATATACC 57.324 36.000 0.00 0.00 46.80 2.73
2322 2983 5.695851 AACTACGAGACGTTTTCCTTCTA 57.304 39.130 1.53 0.00 41.54 2.10
2324 2985 6.264841 ACTACGAGACGTTTTCCTTCTAAT 57.735 37.500 1.53 0.00 41.54 1.73
2325 2986 6.091437 ACTACGAGACGTTTTCCTTCTAATG 58.909 40.000 1.53 0.00 41.54 1.90
2326 2987 3.678548 ACGAGACGTTTTCCTTCTAATGC 59.321 43.478 0.00 0.00 36.35 3.56
2327 2988 3.062234 CGAGACGTTTTCCTTCTAATGCC 59.938 47.826 0.00 0.00 0.00 4.40
2328 2989 3.344515 AGACGTTTTCCTTCTAATGCCC 58.655 45.455 0.00 0.00 0.00 5.36
2329 2990 3.078837 GACGTTTTCCTTCTAATGCCCA 58.921 45.455 0.00 0.00 0.00 5.36
2330 2991 3.081804 ACGTTTTCCTTCTAATGCCCAG 58.918 45.455 0.00 0.00 0.00 4.45
2331 2992 2.423538 CGTTTTCCTTCTAATGCCCAGG 59.576 50.000 0.00 0.00 0.00 4.45
2332 2993 2.143876 TTTCCTTCTAATGCCCAGGC 57.856 50.000 0.38 0.38 42.35 4.85
2333 2994 1.298953 TTCCTTCTAATGCCCAGGCT 58.701 50.000 10.58 0.00 42.51 4.58
2334 2995 0.839946 TCCTTCTAATGCCCAGGCTC 59.160 55.000 10.58 0.00 42.51 4.70
2335 2996 0.179006 CCTTCTAATGCCCAGGCTCC 60.179 60.000 10.58 0.00 42.51 4.70
2336 2997 0.533755 CTTCTAATGCCCAGGCTCCG 60.534 60.000 10.58 0.00 42.51 4.63
2337 2998 1.271840 TTCTAATGCCCAGGCTCCGT 61.272 55.000 10.58 0.00 42.51 4.69
2338 2999 1.224592 CTAATGCCCAGGCTCCGTT 59.775 57.895 10.58 2.79 42.51 4.44
2339 3000 0.468226 CTAATGCCCAGGCTCCGTTA 59.532 55.000 10.58 3.76 42.51 3.18
2340 3001 0.468226 TAATGCCCAGGCTCCGTTAG 59.532 55.000 10.58 0.00 42.51 2.34
2392 3053 7.708752 TCAAACAGAAAAACACACAAGAACTTT 59.291 29.630 0.00 0.00 0.00 2.66
2416 3077 8.555166 TTTTAAATAGAAACACACGCAAGAAG 57.445 30.769 0.00 0.00 43.62 2.85
2429 3091 4.147653 CACGCAAGAAGCAAAGAATGAAAG 59.852 41.667 0.00 0.00 46.13 2.62
2440 3102 6.708949 AGCAAAGAATGAAAGCACATGAAAAT 59.291 30.769 0.00 0.00 0.00 1.82
2454 3116 8.186821 AGCACATGAAAATATCTAAAGCAGAAC 58.813 33.333 0.00 0.00 36.67 3.01
2465 3127 2.755952 AAGCAGAACTGAAAACCCCT 57.244 45.000 5.97 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 9.550406 TCGGATCTATTTTCGGTACATATTTTT 57.450 29.630 0.00 0.00 0.00 1.94
34 35 8.985805 GTCGGATCTATTTTCGGTACATATTTT 58.014 33.333 0.00 0.00 0.00 1.82
35 36 7.601508 GGTCGGATCTATTTTCGGTACATATTT 59.398 37.037 0.00 0.00 0.00 1.40
36 37 7.095270 GGTCGGATCTATTTTCGGTACATATT 58.905 38.462 0.00 0.00 0.00 1.28
37 38 6.209986 TGGTCGGATCTATTTTCGGTACATAT 59.790 38.462 0.00 0.00 0.00 1.78
38 39 5.535783 TGGTCGGATCTATTTTCGGTACATA 59.464 40.000 0.00 0.00 0.00 2.29
39 40 4.342951 TGGTCGGATCTATTTTCGGTACAT 59.657 41.667 0.00 0.00 0.00 2.29
40 41 3.700539 TGGTCGGATCTATTTTCGGTACA 59.299 43.478 0.00 0.00 0.00 2.90
41 42 4.296690 CTGGTCGGATCTATTTTCGGTAC 58.703 47.826 0.00 0.00 0.00 3.34
42 43 3.243636 GCTGGTCGGATCTATTTTCGGTA 60.244 47.826 0.00 0.00 0.00 4.02
43 44 2.483188 GCTGGTCGGATCTATTTTCGGT 60.483 50.000 0.00 0.00 0.00 4.69
44 45 2.135933 GCTGGTCGGATCTATTTTCGG 58.864 52.381 0.00 0.00 0.00 4.30
45 46 1.787155 CGCTGGTCGGATCTATTTTCG 59.213 52.381 0.00 0.00 33.78 3.46
46 47 2.540101 CACGCTGGTCGGATCTATTTTC 59.460 50.000 0.00 0.00 43.86 2.29
47 48 2.550978 CACGCTGGTCGGATCTATTTT 58.449 47.619 0.00 0.00 43.86 1.82
48 49 1.806623 GCACGCTGGTCGGATCTATTT 60.807 52.381 0.00 0.00 43.86 1.40
49 50 0.249489 GCACGCTGGTCGGATCTATT 60.249 55.000 0.00 0.00 43.86 1.73
50 51 1.364171 GCACGCTGGTCGGATCTAT 59.636 57.895 0.00 0.00 43.86 1.98
51 52 2.782222 GGCACGCTGGTCGGATCTA 61.782 63.158 0.00 0.00 43.86 1.98
52 53 4.148825 GGCACGCTGGTCGGATCT 62.149 66.667 0.00 0.00 43.86 2.75
65 66 3.188786 GTCAGTGATCCGCGGCAC 61.189 66.667 23.51 23.48 35.30 5.01
66 67 4.794439 CGTCAGTGATCCGCGGCA 62.794 66.667 23.51 11.48 0.00 5.69
67 68 4.796231 ACGTCAGTGATCCGCGGC 62.796 66.667 23.51 8.29 0.00 6.53
77 78 3.369381 GCATATCTGCCACGTCAGT 57.631 52.632 4.38 0.00 42.88 3.41
105 106 2.028190 CAGAGCCTATGCCGACGG 59.972 66.667 10.29 10.29 38.69 4.79
106 107 2.659897 GCAGAGCCTATGCCGACG 60.660 66.667 0.00 0.00 37.73 5.12
107 108 1.070445 ATGCAGAGCCTATGCCGAC 59.930 57.895 9.12 0.00 43.18 4.79
108 109 1.070275 CATGCAGAGCCTATGCCGA 59.930 57.895 9.12 0.00 43.18 5.54
109 110 1.964891 CCATGCAGAGCCTATGCCG 60.965 63.158 9.12 0.00 43.18 5.69
110 111 1.150081 ACCATGCAGAGCCTATGCC 59.850 57.895 9.12 0.00 43.18 4.40
111 112 1.793134 GCACCATGCAGAGCCTATGC 61.793 60.000 3.93 3.93 44.26 3.14
112 113 1.504647 CGCACCATGCAGAGCCTATG 61.505 60.000 1.20 0.00 45.36 2.23
113 114 1.227764 CGCACCATGCAGAGCCTAT 60.228 57.895 1.20 0.00 45.36 2.57
114 115 2.187685 CGCACCATGCAGAGCCTA 59.812 61.111 1.20 0.00 45.36 3.93
115 116 4.790962 CCGCACCATGCAGAGCCT 62.791 66.667 1.20 0.00 45.36 4.58
118 119 4.790962 AGGCCGCACCATGCAGAG 62.791 66.667 0.00 0.00 45.36 3.35
123 124 2.903855 GATCCAGGCCGCACCATG 60.904 66.667 0.00 0.00 43.14 3.66
124 125 2.288642 ATTGATCCAGGCCGCACCAT 62.289 55.000 0.00 0.00 43.14 3.55
125 126 2.982643 ATTGATCCAGGCCGCACCA 61.983 57.895 0.00 0.00 43.14 4.17
126 127 2.124151 ATTGATCCAGGCCGCACC 60.124 61.111 0.00 0.00 39.61 5.01
127 128 1.451927 TCATTGATCCAGGCCGCAC 60.452 57.895 0.00 0.00 0.00 5.34
128 129 1.451927 GTCATTGATCCAGGCCGCA 60.452 57.895 0.00 0.00 0.00 5.69
129 130 2.537560 CGTCATTGATCCAGGCCGC 61.538 63.158 0.00 0.00 0.00 6.53
130 131 1.153369 ACGTCATTGATCCAGGCCG 60.153 57.895 0.00 0.00 0.00 6.13
131 132 1.097547 CCACGTCATTGATCCAGGCC 61.098 60.000 0.00 0.00 0.00 5.19
132 133 1.718757 GCCACGTCATTGATCCAGGC 61.719 60.000 6.62 6.62 0.00 4.85
133 134 1.097547 GGCCACGTCATTGATCCAGG 61.098 60.000 0.00 0.00 0.00 4.45
134 135 0.107508 AGGCCACGTCATTGATCCAG 60.108 55.000 5.01 0.00 0.00 3.86
135 136 0.392863 CAGGCCACGTCATTGATCCA 60.393 55.000 5.01 0.00 0.00 3.41
136 137 1.718757 GCAGGCCACGTCATTGATCC 61.719 60.000 5.01 0.00 0.00 3.36
137 138 1.723870 GCAGGCCACGTCATTGATC 59.276 57.895 5.01 0.00 0.00 2.92
138 139 2.108514 CGCAGGCCACGTCATTGAT 61.109 57.895 5.01 0.00 0.00 2.57
139 140 2.741985 CGCAGGCCACGTCATTGA 60.742 61.111 5.01 0.00 0.00 2.57
140 141 3.803082 CCGCAGGCCACGTCATTG 61.803 66.667 15.92 0.00 46.14 2.82
152 153 2.279517 GTCGGCATAGGTCCGCAG 60.280 66.667 5.55 0.00 46.05 5.18
153 154 4.201679 CGTCGGCATAGGTCCGCA 62.202 66.667 5.55 0.00 46.05 5.69
154 155 4.944372 CCGTCGGCATAGGTCCGC 62.944 72.222 0.00 1.58 46.05 5.54
185 186 1.299468 GTCAGAGCTATGCCGACGG 60.299 63.158 10.29 10.29 0.00 4.79
186 187 1.655654 CGTCAGAGCTATGCCGACG 60.656 63.158 5.77 6.30 42.79 5.12
187 188 1.946650 GCGTCAGAGCTATGCCGAC 60.947 63.158 16.81 3.22 0.00 4.79
188 189 2.413351 GCGTCAGAGCTATGCCGA 59.587 61.111 16.81 0.00 0.00 5.54
189 190 2.659897 GGCGTCAGAGCTATGCCG 60.660 66.667 7.52 7.52 39.14 5.69
190 191 2.659897 CGGCGTCAGAGCTATGCC 60.660 66.667 2.68 5.76 44.19 4.40
191 192 0.248907 TAACGGCGTCAGAGCTATGC 60.249 55.000 15.17 0.00 37.29 3.14
192 193 1.759994 CTAACGGCGTCAGAGCTATG 58.240 55.000 15.17 0.69 37.29 2.23
193 194 0.030908 GCTAACGGCGTCAGAGCTAT 59.969 55.000 25.21 7.85 37.29 2.97
194 195 1.432251 GCTAACGGCGTCAGAGCTA 59.568 57.895 25.21 9.77 37.29 3.32
195 196 2.182030 GCTAACGGCGTCAGAGCT 59.818 61.111 25.21 9.17 37.29 4.09
196 197 2.886124 GGCTAACGGCGTCAGAGC 60.886 66.667 24.76 24.76 42.94 4.09
197 198 1.517257 CTGGCTAACGGCGTCAGAG 60.517 63.158 15.77 12.92 42.94 3.35
198 199 2.571757 CTGGCTAACGGCGTCAGA 59.428 61.111 15.77 1.37 42.94 3.27
199 200 2.509336 CCTGGCTAACGGCGTCAG 60.509 66.667 15.17 16.17 42.94 3.51
200 201 4.077184 CCCTGGCTAACGGCGTCA 62.077 66.667 15.17 5.91 42.94 4.35
201 202 4.832608 CCCCTGGCTAACGGCGTC 62.833 72.222 15.17 0.09 42.94 5.19
204 205 4.796495 CACCCCCTGGCTAACGGC 62.796 72.222 0.00 0.00 40.90 5.68
205 206 4.109675 CCACCCCCTGGCTAACGG 62.110 72.222 0.00 0.00 31.36 4.44
223 224 4.849310 CATACACGTGGGGCCCGG 62.849 72.222 21.57 15.28 0.00 5.73
227 228 4.460683 TCGGCATACACGTGGGGC 62.461 66.667 21.57 18.79 0.00 5.80
228 229 2.510691 GTCGGCATACACGTGGGG 60.511 66.667 21.57 9.70 0.00 4.96
229 230 2.883730 CGTCGGCATACACGTGGG 60.884 66.667 21.57 10.08 0.00 4.61
230 231 2.883730 CCGTCGGCATACACGTGG 60.884 66.667 21.57 2.89 34.06 4.94
241 242 1.300697 GGCTTACATAGGCCGTCGG 60.301 63.158 6.99 6.99 43.40 4.79
242 243 4.338327 GGCTTACATAGGCCGTCG 57.662 61.111 0.00 0.00 43.40 5.12
246 247 1.300697 CCGTCGGCTTACATAGGCC 60.301 63.158 0.00 0.00 46.31 5.19
247 248 1.300697 CCCGTCGGCTTACATAGGC 60.301 63.158 5.50 0.00 45.60 3.93
248 249 0.314302 CTCCCGTCGGCTTACATAGG 59.686 60.000 5.50 0.00 0.00 2.57
249 250 0.318784 GCTCCCGTCGGCTTACATAG 60.319 60.000 5.50 0.00 0.00 2.23
250 251 0.754217 AGCTCCCGTCGGCTTACATA 60.754 55.000 5.50 0.00 34.96 2.29
251 252 2.058595 AGCTCCCGTCGGCTTACAT 61.059 57.895 5.50 0.00 34.96 2.29
252 253 2.678934 AGCTCCCGTCGGCTTACA 60.679 61.111 5.50 0.00 34.96 2.41
253 254 2.202756 CAGCTCCCGTCGGCTTAC 60.203 66.667 5.50 0.00 36.59 2.34
254 255 2.678934 ACAGCTCCCGTCGGCTTA 60.679 61.111 5.50 0.00 36.59 3.09
255 256 4.070552 GACAGCTCCCGTCGGCTT 62.071 66.667 5.50 0.00 36.59 4.35
262 263 1.863662 ATATACGCCGACAGCTCCCG 61.864 60.000 0.00 0.00 40.39 5.14
263 264 0.388649 CATATACGCCGACAGCTCCC 60.389 60.000 0.00 0.00 40.39 4.30
264 265 0.314302 ACATATACGCCGACAGCTCC 59.686 55.000 0.00 0.00 40.39 4.70
265 266 2.852748 CTACATATACGCCGACAGCTC 58.147 52.381 0.00 0.00 40.39 4.09
266 267 1.068472 GCTACATATACGCCGACAGCT 60.068 52.381 0.00 0.00 40.39 4.24
267 268 1.068472 AGCTACATATACGCCGACAGC 60.068 52.381 0.00 0.00 38.52 4.40
268 269 2.991434 AGCTACATATACGCCGACAG 57.009 50.000 0.00 0.00 0.00 3.51
269 270 2.745821 CCTAGCTACATATACGCCGACA 59.254 50.000 0.00 0.00 0.00 4.35
270 271 2.477525 GCCTAGCTACATATACGCCGAC 60.478 54.545 0.00 0.00 0.00 4.79
271 272 1.741706 GCCTAGCTACATATACGCCGA 59.258 52.381 0.00 0.00 0.00 5.54
272 273 1.202268 GGCCTAGCTACATATACGCCG 60.202 57.143 0.00 0.00 0.00 6.46
273 274 1.202268 CGGCCTAGCTACATATACGCC 60.202 57.143 0.00 0.00 0.00 5.68
274 275 1.741706 TCGGCCTAGCTACATATACGC 59.258 52.381 0.00 0.00 0.00 4.42
275 276 2.222976 CGTCGGCCTAGCTACATATACG 60.223 54.545 0.00 0.00 0.00 3.06
276 277 2.097142 CCGTCGGCCTAGCTACATATAC 59.903 54.545 0.00 0.00 0.00 1.47
277 278 2.362736 CCGTCGGCCTAGCTACATATA 58.637 52.381 0.00 0.00 0.00 0.86
278 279 1.174783 CCGTCGGCCTAGCTACATAT 58.825 55.000 0.00 0.00 0.00 1.78
279 280 1.521450 GCCGTCGGCCTAGCTACATA 61.521 60.000 26.23 0.00 44.06 2.29
280 281 2.857744 GCCGTCGGCCTAGCTACAT 61.858 63.158 26.23 0.00 44.06 2.29
281 282 3.524606 GCCGTCGGCCTAGCTACA 61.525 66.667 26.23 0.00 44.06 2.74
291 292 3.642755 GCATAGAATGGCCGTCGG 58.357 61.111 6.99 6.99 0.00 4.79
298 299 0.677288 TACCCGTCGGCATAGAATGG 59.323 55.000 5.50 0.00 0.00 3.16
299 300 1.604693 GGTACCCGTCGGCATAGAATG 60.605 57.143 5.50 0.00 0.00 2.67
300 301 0.677842 GGTACCCGTCGGCATAGAAT 59.322 55.000 5.50 0.00 0.00 2.40
301 302 1.727511 CGGTACCCGTCGGCATAGAA 61.728 60.000 5.50 0.00 42.73 2.10
302 303 2.188829 CGGTACCCGTCGGCATAGA 61.189 63.158 5.50 0.00 42.73 1.98
303 304 2.333938 CGGTACCCGTCGGCATAG 59.666 66.667 5.50 0.00 42.73 2.23
313 314 0.313357 GAGATAAGCCGACGGTACCC 59.687 60.000 16.73 0.00 0.00 3.69
314 315 1.001597 CAGAGATAAGCCGACGGTACC 60.002 57.143 16.73 0.16 0.00 3.34
315 316 1.599916 GCAGAGATAAGCCGACGGTAC 60.600 57.143 16.73 0.00 0.00 3.34
316 317 0.666913 GCAGAGATAAGCCGACGGTA 59.333 55.000 16.73 0.60 0.00 4.02
317 318 1.437986 GCAGAGATAAGCCGACGGT 59.562 57.895 16.73 0.00 0.00 4.83
318 319 1.658717 CGCAGAGATAAGCCGACGG 60.659 63.158 10.29 10.29 0.00 4.79
319 320 0.306840 TACGCAGAGATAAGCCGACG 59.693 55.000 0.00 0.00 0.00 5.12
320 321 2.117910 GTTACGCAGAGATAAGCCGAC 58.882 52.381 0.00 0.00 0.00 4.79
321 322 1.066605 GGTTACGCAGAGATAAGCCGA 59.933 52.381 0.00 0.00 0.00 5.54
322 323 1.488527 GGTTACGCAGAGATAAGCCG 58.511 55.000 0.00 0.00 0.00 5.52
323 324 1.138266 TGGGTTACGCAGAGATAAGCC 59.862 52.381 0.00 5.48 45.29 4.35
324 325 2.596904 TGGGTTACGCAGAGATAAGC 57.403 50.000 0.00 0.00 0.00 3.09
325 326 2.858344 CGTTGGGTTACGCAGAGATAAG 59.142 50.000 1.79 0.00 34.45 1.73
326 327 2.417651 CCGTTGGGTTACGCAGAGATAA 60.418 50.000 1.79 0.00 40.10 1.75
327 328 1.135527 CCGTTGGGTTACGCAGAGATA 59.864 52.381 1.79 0.00 40.10 1.98
328 329 0.108329 CCGTTGGGTTACGCAGAGAT 60.108 55.000 1.79 0.00 40.10 2.75
329 330 1.290955 CCGTTGGGTTACGCAGAGA 59.709 57.895 1.79 0.00 40.10 3.10
330 331 2.388232 GCCGTTGGGTTACGCAGAG 61.388 63.158 1.79 1.21 40.10 3.35
331 332 2.357760 GCCGTTGGGTTACGCAGA 60.358 61.111 1.79 0.00 40.10 4.26
332 333 3.428282 GGCCGTTGGGTTACGCAG 61.428 66.667 1.79 0.00 40.10 5.18
333 334 2.962142 AAAGGCCGTTGGGTTACGCA 62.962 55.000 2.03 0.00 40.10 5.24
334 335 2.263021 AAAGGCCGTTGGGTTACGC 61.263 57.895 2.03 0.00 40.10 4.42
335 336 1.167781 ACAAAGGCCGTTGGGTTACG 61.168 55.000 30.87 8.54 41.06 3.18
336 337 1.536766 GTACAAAGGCCGTTGGGTTAC 59.463 52.381 30.87 21.10 34.97 2.50
337 338 1.877258 CGTACAAAGGCCGTTGGGTTA 60.877 52.381 30.87 14.73 34.97 2.85
338 339 1.167781 CGTACAAAGGCCGTTGGGTT 61.168 55.000 30.87 15.69 34.97 4.11
339 340 1.598685 CGTACAAAGGCCGTTGGGT 60.599 57.895 30.87 16.36 34.97 4.51
340 341 2.973316 GCGTACAAAGGCCGTTGGG 61.973 63.158 30.87 21.13 32.50 4.12
341 342 2.559330 GCGTACAAAGGCCGTTGG 59.441 61.111 30.87 16.90 32.50 3.77
342 343 2.559330 GGCGTACAAAGGCCGTTG 59.441 61.111 27.16 27.16 45.99 4.10
347 348 3.484547 CCGTCGGCGTACAAAGGC 61.485 66.667 9.28 0.00 36.15 4.35
348 349 3.484547 GCCGTCGGCGTACAAAGG 61.485 66.667 22.50 0.00 39.62 3.11
358 359 4.760047 CCTGGTTCTGGCCGTCGG 62.760 72.222 6.99 6.99 0.00 4.79
364 365 2.743928 CGACAGCCTGGTTCTGGC 60.744 66.667 7.59 7.59 46.61 4.85
365 366 2.046892 CCGACAGCCTGGTTCTGG 60.047 66.667 0.00 0.00 35.94 3.86
366 367 2.743928 GCCGACAGCCTGGTTCTG 60.744 66.667 0.00 0.00 37.56 3.02
367 368 1.264749 TATGCCGACAGCCTGGTTCT 61.265 55.000 0.00 0.00 42.71 3.01
368 369 0.179045 ATATGCCGACAGCCTGGTTC 60.179 55.000 0.00 0.00 42.71 3.62
369 370 0.179045 GATATGCCGACAGCCTGGTT 60.179 55.000 0.00 0.00 42.71 3.67
370 371 1.050988 AGATATGCCGACAGCCTGGT 61.051 55.000 0.00 0.00 42.71 4.00
371 372 0.320247 GAGATATGCCGACAGCCTGG 60.320 60.000 0.00 0.00 42.71 4.45
372 373 0.320247 GGAGATATGCCGACAGCCTG 60.320 60.000 0.00 0.00 42.71 4.85
373 374 1.476007 GGGAGATATGCCGACAGCCT 61.476 60.000 0.00 0.00 42.71 4.58
374 375 1.004440 GGGAGATATGCCGACAGCC 60.004 63.158 0.00 0.00 42.71 4.85
375 376 0.320247 CTGGGAGATATGCCGACAGC 60.320 60.000 0.00 0.00 44.14 4.40
376 377 0.319728 CCTGGGAGATATGCCGACAG 59.680 60.000 0.00 0.00 0.00 3.51
377 378 0.105709 TCCTGGGAGATATGCCGACA 60.106 55.000 0.00 0.00 0.00 4.35
378 379 1.001406 CTTCCTGGGAGATATGCCGAC 59.999 57.143 0.00 0.00 0.00 4.79
379 380 1.342074 CTTCCTGGGAGATATGCCGA 58.658 55.000 0.00 0.00 0.00 5.54
380 381 0.321122 GCTTCCTGGGAGATATGCCG 60.321 60.000 6.06 0.00 0.00 5.69
381 382 0.037447 GGCTTCCTGGGAGATATGCC 59.963 60.000 6.06 0.00 0.00 4.40
382 383 0.321122 CGGCTTCCTGGGAGATATGC 60.321 60.000 6.06 0.00 0.00 3.14
383 384 1.001406 GTCGGCTTCCTGGGAGATATG 59.999 57.143 6.06 0.00 0.00 1.78
384 385 1.343069 GTCGGCTTCCTGGGAGATAT 58.657 55.000 6.06 0.00 0.00 1.63
385 386 1.107538 CGTCGGCTTCCTGGGAGATA 61.108 60.000 6.06 0.00 0.00 1.98
386 387 2.427245 CGTCGGCTTCCTGGGAGAT 61.427 63.158 6.06 0.00 0.00 2.75
387 388 3.068691 CGTCGGCTTCCTGGGAGA 61.069 66.667 6.06 0.00 0.00 3.71
388 389 3.068691 TCGTCGGCTTCCTGGGAG 61.069 66.667 0.00 0.00 0.00 4.30
389 390 3.068691 CTCGTCGGCTTCCTGGGA 61.069 66.667 0.00 0.00 0.00 4.37
390 391 4.148825 CCTCGTCGGCTTCCTGGG 62.149 72.222 0.00 0.00 0.00 4.45
391 392 4.148825 CCCTCGTCGGCTTCCTGG 62.149 72.222 0.00 0.00 0.00 4.45
392 393 4.821589 GCCCTCGTCGGCTTCCTG 62.822 72.222 8.07 0.00 46.10 3.86
409 410 1.732683 GCCAAAACAATGCCGACGG 60.733 57.895 10.29 10.29 0.00 4.79
410 411 1.732683 GGCCAAAACAATGCCGACG 60.733 57.895 0.00 0.00 35.08 5.12
411 412 4.260194 GGCCAAAACAATGCCGAC 57.740 55.556 0.00 0.00 35.08 4.79
414 415 1.732683 CGACGGCCAAAACAATGCC 60.733 57.895 2.24 0.00 41.85 4.40
415 416 1.732683 CCGACGGCCAAAACAATGC 60.733 57.895 2.24 0.00 0.00 3.56
416 417 1.080839 CCCGACGGCCAAAACAATG 60.081 57.895 8.86 0.00 0.00 2.82
417 418 2.272447 CCCCGACGGCCAAAACAAT 61.272 57.895 8.86 0.00 0.00 2.71
418 419 2.335092 TACCCCGACGGCCAAAACAA 62.335 55.000 8.86 0.00 33.26 2.83
419 420 2.127027 ATACCCCGACGGCCAAAACA 62.127 55.000 8.86 0.00 33.26 2.83
420 421 1.377594 ATACCCCGACGGCCAAAAC 60.378 57.895 8.86 0.00 33.26 2.43
421 422 1.377463 CATACCCCGACGGCCAAAA 60.377 57.895 8.86 0.00 33.26 2.44
422 423 2.269562 CATACCCCGACGGCCAAA 59.730 61.111 8.86 0.00 33.26 3.28
423 424 3.788145 CCATACCCCGACGGCCAA 61.788 66.667 8.86 0.00 33.26 4.52
427 428 3.476419 AAGGCCATACCCCGACGG 61.476 66.667 6.99 6.99 40.58 4.79
428 429 2.203015 CAAGGCCATACCCCGACG 60.203 66.667 5.01 0.00 40.58 5.12
429 430 0.746923 GAACAAGGCCATACCCCGAC 60.747 60.000 5.01 0.00 40.58 4.79
430 431 1.605453 GAACAAGGCCATACCCCGA 59.395 57.895 5.01 0.00 40.58 5.14
431 432 1.453197 GGAACAAGGCCATACCCCG 60.453 63.158 5.01 0.00 40.58 5.73
432 433 1.453197 CGGAACAAGGCCATACCCC 60.453 63.158 5.01 0.00 40.58 4.95
433 434 1.453197 CCGGAACAAGGCCATACCC 60.453 63.158 5.01 0.00 40.58 3.69
434 435 0.542805 TACCGGAACAAGGCCATACC 59.457 55.000 9.46 0.00 39.61 2.73
435 436 1.208776 ACTACCGGAACAAGGCCATAC 59.791 52.381 9.46 0.00 0.00 2.39
436 437 1.208535 CACTACCGGAACAAGGCCATA 59.791 52.381 9.46 0.00 0.00 2.74
437 438 0.035439 CACTACCGGAACAAGGCCAT 60.035 55.000 9.46 0.00 0.00 4.40
438 439 1.122632 TCACTACCGGAACAAGGCCA 61.123 55.000 9.46 0.00 0.00 5.36
439 440 0.391263 CTCACTACCGGAACAAGGCC 60.391 60.000 9.46 0.00 0.00 5.19
440 441 0.606604 TCTCACTACCGGAACAAGGC 59.393 55.000 9.46 0.00 0.00 4.35
441 442 2.164624 CTCTCTCACTACCGGAACAAGG 59.835 54.545 9.46 0.00 0.00 3.61
442 443 2.416162 GCTCTCTCACTACCGGAACAAG 60.416 54.545 9.46 2.00 0.00 3.16
443 444 1.544691 GCTCTCTCACTACCGGAACAA 59.455 52.381 9.46 0.00 0.00 2.83
444 445 1.174783 GCTCTCTCACTACCGGAACA 58.825 55.000 9.46 0.00 0.00 3.18
445 446 1.133407 CTGCTCTCTCACTACCGGAAC 59.867 57.143 9.46 0.00 0.00 3.62
446 447 1.004394 TCTGCTCTCTCACTACCGGAA 59.996 52.381 9.46 0.00 0.00 4.30
447 448 0.618981 TCTGCTCTCTCACTACCGGA 59.381 55.000 9.46 0.00 0.00 5.14
448 449 0.736053 GTCTGCTCTCTCACTACCGG 59.264 60.000 0.00 0.00 0.00 5.28
449 450 0.375454 CGTCTGCTCTCTCACTACCG 59.625 60.000 0.00 0.00 0.00 4.02
450 451 0.736053 CCGTCTGCTCTCTCACTACC 59.264 60.000 0.00 0.00 0.00 3.18
451 452 1.740297 TCCGTCTGCTCTCTCACTAC 58.260 55.000 0.00 0.00 0.00 2.73
452 453 2.491675 TTCCGTCTGCTCTCTCACTA 57.508 50.000 0.00 0.00 0.00 2.74
453 454 1.621992 TTTCCGTCTGCTCTCTCACT 58.378 50.000 0.00 0.00 0.00 3.41
454 455 2.062519 GTTTTCCGTCTGCTCTCTCAC 58.937 52.381 0.00 0.00 0.00 3.51
455 456 1.686587 TGTTTTCCGTCTGCTCTCTCA 59.313 47.619 0.00 0.00 0.00 3.27
456 457 2.440539 TGTTTTCCGTCTGCTCTCTC 57.559 50.000 0.00 0.00 0.00 3.20
467 468 7.315247 TCACTTAATCATACCATGTTTTCCG 57.685 36.000 0.00 0.00 0.00 4.30
480 481 6.891361 TGTCACCCATTTGATCACTTAATCAT 59.109 34.615 0.00 0.00 35.65 2.45
485 486 4.009675 GCTGTCACCCATTTGATCACTTA 58.990 43.478 0.00 0.00 0.00 2.24
507 508 2.017049 CCTTTTCTATCCCTGTTGCCG 58.983 52.381 0.00 0.00 0.00 5.69
516 517 2.029520 GCAAGGGCCCCTTTTCTATCC 61.030 57.143 21.43 0.00 41.69 2.59
730 1265 3.851976 AAGTACGCTCGATCTCTTTGT 57.148 42.857 0.00 0.00 0.00 2.83
854 1389 0.035820 TAGGGGAACGGTGAACATGC 60.036 55.000 0.00 0.00 0.00 4.06
999 1543 0.671472 TGCTGTTGAGACGAGCCATG 60.671 55.000 0.00 0.00 32.48 3.66
1423 1968 6.203723 GGAAATATGCACAAGATCTGGACTAC 59.796 42.308 3.42 0.00 0.00 2.73
1455 2000 1.404391 ACAGACGGTTATGGAGTAGCG 59.596 52.381 0.00 0.00 40.74 4.26
1478 2023 4.538917 ACCGTTTGCTTTTTATAACGTGG 58.461 39.130 0.00 0.00 41.11 4.94
1532 2142 5.971493 TCTATTTTTCCTCCTTTTTGGGGA 58.029 37.500 0.00 0.00 39.16 4.81
1542 2152 7.627300 GCTCATGAGTTGTTCTATTTTTCCTCC 60.627 40.741 23.38 0.00 0.00 4.30
1548 2158 7.649306 GTGTTTGCTCATGAGTTGTTCTATTTT 59.351 33.333 23.38 0.00 0.00 1.82
1579 2192 9.771534 CCTAGCTCTTAAGAAAATACTATGCTT 57.228 33.333 13.27 0.00 0.00 3.91
1580 2193 9.148879 TCCTAGCTCTTAAGAAAATACTATGCT 57.851 33.333 6.63 10.39 0.00 3.79
1588 2201 8.611051 TTCCTACTCCTAGCTCTTAAGAAAAT 57.389 34.615 6.63 0.00 0.00 1.82
1797 2410 4.624024 TCAACGTAGAAATTAAGCTCCACG 59.376 41.667 0.00 6.17 0.00 4.94
1810 2423 2.560981 TGAGCACTCCATCAACGTAGAA 59.439 45.455 0.00 0.00 0.00 2.10
1872 2489 6.578944 AGACACACTACTGAAATAACACACA 58.421 36.000 0.00 0.00 0.00 3.72
2004 2661 1.669265 TCAGACGTACACATCGGCTAG 59.331 52.381 0.00 0.00 45.31 3.42
2021 2680 2.027745 ACAAGTAGGTCAGGCACATCAG 60.028 50.000 0.00 0.00 0.00 2.90
2067 2726 8.196771 TCCATGCACATCAATAATTAGGAAAAC 58.803 33.333 0.00 0.00 0.00 2.43
2109 2770 3.071023 TGGATGGTGCAATAGCTAGGTAC 59.929 47.826 3.24 3.83 42.74 3.34
2110 2771 3.313791 TGGATGGTGCAATAGCTAGGTA 58.686 45.455 3.73 3.73 42.74 3.08
2111 2772 2.105477 CTGGATGGTGCAATAGCTAGGT 59.895 50.000 0.00 0.00 42.74 3.08
2112 2773 2.775890 CTGGATGGTGCAATAGCTAGG 58.224 52.381 0.00 0.00 42.74 3.02
2113 2774 2.149578 GCTGGATGGTGCAATAGCTAG 58.850 52.381 0.00 0.00 42.74 3.42
2114 2775 1.490069 TGCTGGATGGTGCAATAGCTA 59.510 47.619 0.00 0.00 42.74 3.32
2115 2776 0.256752 TGCTGGATGGTGCAATAGCT 59.743 50.000 0.00 0.00 42.74 3.32
2116 2777 0.666913 CTGCTGGATGGTGCAATAGC 59.333 55.000 0.00 0.00 38.81 2.97
2117 2778 2.048444 ACTGCTGGATGGTGCAATAG 57.952 50.000 0.00 0.00 38.81 1.73
2118 2779 3.136260 TCATACTGCTGGATGGTGCAATA 59.864 43.478 15.16 0.00 38.81 1.90
2119 2780 2.092267 TCATACTGCTGGATGGTGCAAT 60.092 45.455 15.16 0.00 38.81 3.56
2120 2781 1.281577 TCATACTGCTGGATGGTGCAA 59.718 47.619 15.16 0.00 38.81 4.08
2126 2787 3.812262 TGTTCCATCATACTGCTGGATG 58.188 45.455 9.47 9.47 41.68 3.51
2145 2806 5.353394 AACATCCGTATAGTGTCCAATGT 57.647 39.130 0.00 0.00 0.00 2.71
2288 2949 3.550678 GTCTCGTAGTTAATTTGGAGCGG 59.449 47.826 0.00 0.00 0.00 5.52
2289 2950 3.239941 CGTCTCGTAGTTAATTTGGAGCG 59.760 47.826 0.00 0.00 0.00 5.03
2322 2983 1.224592 CTAACGGAGCCTGGGCATT 59.775 57.895 14.39 5.26 44.88 3.56
2324 2985 4.096003 GCTAACGGAGCCTGGGCA 62.096 66.667 14.39 0.00 46.41 5.36
2341 3002 0.676466 TTCCCTAACCTGCATGCGTG 60.676 55.000 14.09 9.02 0.00 5.34
2342 3003 0.037590 TTTCCCTAACCTGCATGCGT 59.962 50.000 14.09 2.34 0.00 5.24
2343 3004 1.135402 GTTTTCCCTAACCTGCATGCG 60.135 52.381 14.09 7.87 0.00 4.73
2344 3005 1.892474 TGTTTTCCCTAACCTGCATGC 59.108 47.619 11.82 11.82 0.00 4.06
2345 3006 3.157087 AGTGTTTTCCCTAACCTGCATG 58.843 45.455 0.00 0.00 0.00 4.06
2346 3007 3.181434 TGAGTGTTTTCCCTAACCTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
2347 3008 2.173782 TGAGTGTTTTCCCTAACCTGCA 59.826 45.455 0.00 0.00 0.00 4.41
2348 3009 2.858745 TGAGTGTTTTCCCTAACCTGC 58.141 47.619 0.00 0.00 0.00 4.85
2349 3010 4.642885 TGTTTGAGTGTTTTCCCTAACCTG 59.357 41.667 0.00 0.00 0.00 4.00
2350 3011 4.862371 TGTTTGAGTGTTTTCCCTAACCT 58.138 39.130 0.00 0.00 0.00 3.50
2351 3012 4.885325 TCTGTTTGAGTGTTTTCCCTAACC 59.115 41.667 0.00 0.00 0.00 2.85
2352 3013 6.445357 TTCTGTTTGAGTGTTTTCCCTAAC 57.555 37.500 0.00 0.00 0.00 2.34
2353 3014 7.469537 TTTTCTGTTTGAGTGTTTTCCCTAA 57.530 32.000 0.00 0.00 0.00 2.69
2392 3053 6.635239 GCTTCTTGCGTGTGTTTCTATTTAAA 59.365 34.615 0.00 0.00 0.00 1.52
2398 3059 2.556257 TGCTTCTTGCGTGTGTTTCTA 58.444 42.857 0.00 0.00 46.63 2.10
2416 3077 5.910637 TTTCATGTGCTTTCATTCTTTGC 57.089 34.783 0.00 0.00 0.00 3.68
2429 3091 8.186821 AGTTCTGCTTTAGATATTTTCATGTGC 58.813 33.333 0.00 0.00 34.80 4.57
2440 3102 5.944007 GGGGTTTTCAGTTCTGCTTTAGATA 59.056 40.000 0.00 0.00 34.80 1.98
2443 3105 4.145052 AGGGGTTTTCAGTTCTGCTTTAG 58.855 43.478 0.00 0.00 0.00 1.85
2454 3116 1.165270 CCGCTGTTAGGGGTTTTCAG 58.835 55.000 3.94 0.00 42.78 3.02
2465 3127 2.493030 GTAGCTCCGCCGCTGTTA 59.507 61.111 6.90 0.00 41.12 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.