Multiple sequence alignment - TraesCS5B01G145300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G145300 chr5B 100.000 4263 0 0 1 4263 272437831 272442093 0.000000e+00 7873.0
1 TraesCS5B01G145300 chr5B 99.251 801 6 0 3463 4263 278026568 278025768 0.000000e+00 1447.0
2 TraesCS5B01G145300 chr5A 93.478 1380 72 10 570 1935 323020947 323022322 0.000000e+00 2034.0
3 TraesCS5B01G145300 chr5A 92.329 1069 37 17 2246 3294 323022466 323023509 0.000000e+00 1478.0
4 TraesCS5B01G145300 chr5A 99.127 802 7 0 3462 4263 534561715 534562516 0.000000e+00 1443.0
5 TraesCS5B01G145300 chr5A 92.398 171 13 0 3293 3463 657203723 657203893 1.180000e-60 244.0
6 TraesCS5B01G145300 chr5A 91.250 160 5 2 2027 2186 323022314 323022464 4.320000e-50 209.0
7 TraesCS5B01G145300 chr5D 95.053 1132 31 15 568 1692 232456184 232455071 0.000000e+00 1757.0
8 TraesCS5B01G145300 chr5D 90.086 1281 51 22 2031 3294 232454892 232453671 0.000000e+00 1592.0
9 TraesCS5B01G145300 chr5D 89.080 522 37 8 1 517 232456700 232456194 7.780000e-177 630.0
10 TraesCS5B01G145300 chr5D 91.892 185 12 3 1745 1928 232455071 232454889 5.470000e-64 255.0
11 TraesCS5B01G145300 chr5D 92.442 172 8 3 3290 3461 230416828 230416994 1.530000e-59 241.0
12 TraesCS5B01G145300 chr4B 99.002 802 8 0 3462 4263 654028960 654029761 0.000000e+00 1437.0
13 TraesCS5B01G145300 chr7B 99.001 801 8 0 3463 4263 706675857 706676657 0.000000e+00 1435.0
14 TraesCS5B01G145300 chr7B 80.336 417 62 15 999 1402 642453737 642453328 8.960000e-77 298.0
15 TraesCS5B01G145300 chr7B 91.477 176 12 2 3288 3462 619430614 619430441 5.510000e-59 239.0
16 TraesCS5B01G145300 chr7B 90.608 181 10 5 3298 3476 618334333 618334158 2.560000e-57 233.0
17 TraesCS5B01G145300 chr7B 90.608 181 10 5 3298 3476 618761030 618761205 2.560000e-57 233.0
18 TraesCS5B01G145300 chr3B 95.880 801 21 3 3463 4263 755700271 755701059 0.000000e+00 1286.0
19 TraesCS5B01G145300 chr3B 82.247 445 60 16 3826 4263 283019 282587 2.420000e-97 366.0
20 TraesCS5B01G145300 chr3B 85.629 167 23 1 1096 1261 810546566 810546400 1.580000e-39 174.0
21 TraesCS5B01G145300 chr7A 93.473 812 40 6 3463 4263 38977681 38976872 0.000000e+00 1194.0
22 TraesCS5B01G145300 chr7A 93.227 812 42 6 3463 4263 38972193 38971384 0.000000e+00 1182.0
23 TraesCS5B01G145300 chr7A 93.137 816 39 8 3463 4263 38983161 38982348 0.000000e+00 1181.0
24 TraesCS5B01G145300 chr3A 91.789 816 49 8 3462 4263 742871017 742870206 0.000000e+00 1120.0
25 TraesCS5B01G145300 chr3A 84.553 369 45 9 3899 4263 56663522 56663162 5.240000e-94 355.0
26 TraesCS5B01G145300 chr3A 92.398 171 8 3 3293 3463 596770968 596770803 5.510000e-59 239.0
27 TraesCS5B01G145300 chr7D 81.517 422 57 17 998 1405 578685405 578684991 1.140000e-85 327.0
28 TraesCS5B01G145300 chr2D 91.620 179 9 4 3282 3459 87407352 87407525 4.260000e-60 243.0
29 TraesCS5B01G145300 chr2D 89.286 56 2 1 1938 1989 591955071 591955016 2.750000e-07 67.6
30 TraesCS5B01G145300 chr6B 91.908 173 9 3 3289 3461 132353581 132353414 1.980000e-58 237.0
31 TraesCS5B01G145300 chr1B 90.556 180 11 4 3285 3463 24349043 24349217 2.560000e-57 233.0
32 TraesCS5B01G145300 chr1A 100.000 28 0 0 1935 1962 549852121 549852148 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G145300 chr5B 272437831 272442093 4262 False 7873.000000 7873 100.000000 1 4263 1 chr5B.!!$F1 4262
1 TraesCS5B01G145300 chr5B 278025768 278026568 800 True 1447.000000 1447 99.251000 3463 4263 1 chr5B.!!$R1 800
2 TraesCS5B01G145300 chr5A 534561715 534562516 801 False 1443.000000 1443 99.127000 3462 4263 1 chr5A.!!$F1 801
3 TraesCS5B01G145300 chr5A 323020947 323023509 2562 False 1240.333333 2034 92.352333 570 3294 3 chr5A.!!$F3 2724
4 TraesCS5B01G145300 chr5D 232453671 232456700 3029 True 1058.500000 1757 91.527750 1 3294 4 chr5D.!!$R1 3293
5 TraesCS5B01G145300 chr4B 654028960 654029761 801 False 1437.000000 1437 99.002000 3462 4263 1 chr4B.!!$F1 801
6 TraesCS5B01G145300 chr7B 706675857 706676657 800 False 1435.000000 1435 99.001000 3463 4263 1 chr7B.!!$F2 800
7 TraesCS5B01G145300 chr3B 755700271 755701059 788 False 1286.000000 1286 95.880000 3463 4263 1 chr3B.!!$F1 800
8 TraesCS5B01G145300 chr7A 38976872 38977681 809 True 1194.000000 1194 93.473000 3463 4263 1 chr7A.!!$R2 800
9 TraesCS5B01G145300 chr7A 38971384 38972193 809 True 1182.000000 1182 93.227000 3463 4263 1 chr7A.!!$R1 800
10 TraesCS5B01G145300 chr7A 38982348 38983161 813 True 1181.000000 1181 93.137000 3463 4263 1 chr7A.!!$R3 800
11 TraesCS5B01G145300 chr3A 742870206 742871017 811 True 1120.000000 1120 91.789000 3462 4263 1 chr3A.!!$R3 801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
489 495 0.249657 CGATGTCCTAGCAAGCCCTC 60.250 60.0 0.00 0.00 0.00 4.30 F
1651 1668 0.241749 TTGTAGCTCCACCGTACGTG 59.758 55.0 15.21 12.06 42.62 4.49 F
2021 2038 0.399454 ATCCGGAGATTCCTGCATGG 59.601 55.0 11.34 0.00 33.30 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2388 0.035317 ATCCAAACAGACAGCGAGCA 59.965 50.000 0.0 0.0 0.00 4.26 R
2565 2601 1.284491 TCCTGCCAGTTGCCATATTGA 59.716 47.619 0.0 0.0 40.16 2.57 R
3434 3470 2.024273 TCCCTCCGTTCCTGAATACTCT 60.024 50.000 0.0 0.0 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 70 7.255695 CCAATTATGTATCCACACTTGCATGAT 60.256 37.037 6.60 0.00 37.54 2.45
70 72 7.728847 TTATGTATCCACACTTGCATGATAC 57.271 36.000 6.60 7.97 37.54 2.24
149 154 4.530094 TCAGCCGTTAGATTAAAATGCG 57.470 40.909 0.00 0.00 0.00 4.73
173 178 1.004161 GCTGCTCCTTCTTCCTCCTTT 59.996 52.381 0.00 0.00 0.00 3.11
206 211 3.559171 CCTTCCTTCCCGATCTTGTTCAA 60.559 47.826 0.00 0.00 0.00 2.69
208 213 2.637872 TCCTTCCCGATCTTGTTCAAGT 59.362 45.455 11.52 1.09 0.00 3.16
242 247 0.320374 TCCTCCACCGATGACAACAC 59.680 55.000 0.00 0.00 0.00 3.32
248 253 1.292223 CCGATGACAACACGGTCCT 59.708 57.895 9.78 0.00 41.47 3.85
251 256 2.418197 CCGATGACAACACGGTCCTATT 60.418 50.000 9.78 0.00 41.47 1.73
254 259 3.220507 TGACAACACGGTCCTATTACG 57.779 47.619 0.00 0.00 36.97 3.18
259 264 2.658285 ACACGGTCCTATTACGGATGA 58.342 47.619 0.00 0.00 35.11 2.92
265 270 4.022242 CGGTCCTATTACGGATGAATGTCT 60.022 45.833 0.00 0.00 35.11 3.41
267 272 5.696724 GGTCCTATTACGGATGAATGTCTTG 59.303 44.000 0.00 0.00 35.11 3.02
278 283 2.364970 TGAATGTCTTGCCAAACCCTTG 59.635 45.455 0.00 0.00 0.00 3.61
290 295 3.371168 CAAACCCTTGTTGACGACATTG 58.629 45.455 0.00 0.00 38.26 2.82
291 296 0.951558 ACCCTTGTTGACGACATTGC 59.048 50.000 0.00 0.00 38.26 3.56
292 297 1.238439 CCCTTGTTGACGACATTGCT 58.762 50.000 0.00 0.00 38.26 3.91
293 298 2.224426 ACCCTTGTTGACGACATTGCTA 60.224 45.455 0.00 0.00 38.26 3.49
294 299 3.009723 CCCTTGTTGACGACATTGCTAT 58.990 45.455 0.00 0.00 38.26 2.97
295 300 3.063997 CCCTTGTTGACGACATTGCTATC 59.936 47.826 0.00 0.00 38.26 2.08
296 301 3.242091 CCTTGTTGACGACATTGCTATCG 60.242 47.826 0.00 0.00 43.97 2.92
297 302 1.658596 TGTTGACGACATTGCTATCGC 59.341 47.619 0.00 0.00 42.12 4.58
298 303 0.920664 TTGACGACATTGCTATCGCG 59.079 50.000 0.00 0.00 42.12 5.87
350 355 2.162608 CCAGTCAGAGTAGACAACCTCG 59.837 54.545 0.00 0.00 40.98 4.63
370 375 4.263572 CTTGGCCACGGTGTCCCA 62.264 66.667 3.88 9.45 0.00 4.37
371 376 3.567579 CTTGGCCACGGTGTCCCAT 62.568 63.158 3.88 0.00 0.00 4.00
372 377 3.859118 TTGGCCACGGTGTCCCATG 62.859 63.158 3.88 0.00 0.00 3.66
373 378 4.344865 GGCCACGGTGTCCCATGT 62.345 66.667 7.45 0.00 0.00 3.21
374 379 3.055719 GCCACGGTGTCCCATGTG 61.056 66.667 7.45 0.00 0.00 3.21
375 380 2.429930 CCACGGTGTCCCATGTGT 59.570 61.111 7.45 0.00 0.00 3.72
376 381 1.674637 CCACGGTGTCCCATGTGTA 59.325 57.895 7.45 0.00 0.00 2.90
377 382 0.672401 CCACGGTGTCCCATGTGTAC 60.672 60.000 7.45 0.00 0.00 2.90
384 389 0.524862 GTCCCATGTGTACGTCTCGT 59.475 55.000 0.00 0.00 44.35 4.18
403 408 1.525619 GTGCTCGGGCGTTATGTAATC 59.474 52.381 1.14 0.00 42.25 1.75
412 417 2.605818 GCGTTATGTAATCCGAGCAACA 59.394 45.455 0.00 0.00 0.00 3.33
429 435 6.146021 CGAGCAACAATCAAAATAAAAAGGCT 59.854 34.615 0.00 0.00 0.00 4.58
441 447 0.405973 AAAAGGCTCCCTTCTCCACC 59.594 55.000 0.00 0.00 43.92 4.61
447 453 0.978146 CTCCCTTCTCCACCCGTGAT 60.978 60.000 0.00 0.00 0.00 3.06
449 455 1.553690 CCCTTCTCCACCCGTGATGT 61.554 60.000 0.00 0.00 0.00 3.06
489 495 0.249657 CGATGTCCTAGCAAGCCCTC 60.250 60.000 0.00 0.00 0.00 4.30
517 523 2.359478 GCCCCAACCGATCGTGTT 60.359 61.111 15.09 14.38 0.00 3.32
518 524 2.686816 GCCCCAACCGATCGTGTTG 61.687 63.158 28.04 28.04 42.11 3.33
519 525 1.302192 CCCCAACCGATCGTGTTGT 60.302 57.895 30.20 15.61 41.13 3.32
522 528 0.601576 CCAACCGATCGTGTTGTCCA 60.602 55.000 30.20 0.00 41.13 4.02
523 529 0.790207 CAACCGATCGTGTTGTCCAG 59.210 55.000 27.28 12.26 38.58 3.86
525 531 1.079819 CCGATCGTGTTGTCCAGCT 60.080 57.895 15.09 0.00 0.00 4.24
527 533 1.406219 CGATCGTGTTGTCCAGCTCG 61.406 60.000 7.03 0.13 0.00 5.03
528 534 1.078759 GATCGTGTTGTCCAGCTCGG 61.079 60.000 5.92 0.00 0.00 4.63
529 535 1.532604 ATCGTGTTGTCCAGCTCGGA 61.533 55.000 5.92 1.25 43.61 4.55
537 543 2.671145 TCCAGCTCGGACATTGTCT 58.329 52.632 16.02 0.00 39.64 3.41
538 544 1.847328 TCCAGCTCGGACATTGTCTA 58.153 50.000 16.02 4.77 39.64 2.59
539 545 1.476891 TCCAGCTCGGACATTGTCTAC 59.523 52.381 16.02 0.26 39.64 2.59
540 546 1.478510 CCAGCTCGGACATTGTCTACT 59.521 52.381 16.02 6.25 36.56 2.57
541 547 2.480416 CCAGCTCGGACATTGTCTACTC 60.480 54.545 16.02 4.59 36.56 2.59
542 548 1.751924 AGCTCGGACATTGTCTACTCC 59.248 52.381 16.02 0.00 32.47 3.85
543 549 1.534175 GCTCGGACATTGTCTACTCCG 60.534 57.143 16.02 11.46 45.86 4.63
546 552 2.211353 GGACATTGTCTACTCCGAGC 57.789 55.000 16.02 0.00 32.47 5.03
547 553 1.202428 GGACATTGTCTACTCCGAGCC 60.202 57.143 16.02 0.00 32.47 4.70
548 554 0.456221 ACATTGTCTACTCCGAGCCG 59.544 55.000 0.00 0.00 0.00 5.52
549 555 0.872021 CATTGTCTACTCCGAGCCGC 60.872 60.000 0.00 0.00 0.00 6.53
550 556 2.337749 ATTGTCTACTCCGAGCCGCG 62.338 60.000 0.00 0.00 40.47 6.46
551 557 3.200593 GTCTACTCCGAGCCGCGA 61.201 66.667 8.23 0.00 44.57 5.87
552 558 2.203167 TCTACTCCGAGCCGCGAT 60.203 61.111 8.23 0.00 44.57 4.58
553 559 2.252346 TCTACTCCGAGCCGCGATC 61.252 63.158 8.23 4.13 44.57 3.69
554 560 2.515290 TACTCCGAGCCGCGATCA 60.515 61.111 8.23 0.00 44.57 2.92
555 561 2.060004 CTACTCCGAGCCGCGATCAA 62.060 60.000 8.23 0.00 44.57 2.57
556 562 1.452953 TACTCCGAGCCGCGATCAAT 61.453 55.000 8.23 0.00 44.57 2.57
557 563 1.285950 CTCCGAGCCGCGATCAATA 59.714 57.895 8.23 0.00 44.57 1.90
558 564 0.730834 CTCCGAGCCGCGATCAATAG 60.731 60.000 8.23 0.00 44.57 1.73
559 565 1.734477 CCGAGCCGCGATCAATAGG 60.734 63.158 8.23 0.00 44.57 2.57
560 566 1.285950 CGAGCCGCGATCAATAGGA 59.714 57.895 8.23 0.00 44.57 2.94
561 567 0.318699 CGAGCCGCGATCAATAGGAA 60.319 55.000 8.23 0.00 44.57 3.36
562 568 1.140816 GAGCCGCGATCAATAGGAAC 58.859 55.000 8.23 0.00 0.00 3.62
563 569 0.464036 AGCCGCGATCAATAGGAACA 59.536 50.000 8.23 0.00 0.00 3.18
564 570 0.582005 GCCGCGATCAATAGGAACAC 59.418 55.000 8.23 0.00 0.00 3.32
565 571 1.217882 CCGCGATCAATAGGAACACC 58.782 55.000 8.23 0.00 0.00 4.16
566 572 0.852777 CGCGATCAATAGGAACACCG 59.147 55.000 0.00 0.00 0.00 4.94
567 573 0.582005 GCGATCAATAGGAACACCGC 59.418 55.000 0.00 0.00 34.71 5.68
568 574 1.217882 CGATCAATAGGAACACCGCC 58.782 55.000 0.00 0.00 0.00 6.13
569 575 1.594331 GATCAATAGGAACACCGCCC 58.406 55.000 0.00 0.00 0.00 6.13
570 576 1.141053 GATCAATAGGAACACCGCCCT 59.859 52.381 0.00 0.00 36.60 5.19
571 577 0.539986 TCAATAGGAACACCGCCCTC 59.460 55.000 0.00 0.00 34.11 4.30
572 578 0.463833 CAATAGGAACACCGCCCTCC 60.464 60.000 0.00 0.00 34.11 4.30
573 579 1.632965 AATAGGAACACCGCCCTCCC 61.633 60.000 0.00 0.00 34.11 4.30
576 582 3.647771 GAACACCGCCCTCCCCTT 61.648 66.667 0.00 0.00 0.00 3.95
674 680 3.960755 TCGCCTTCTCTCATAGGAAATCA 59.039 43.478 0.00 0.00 33.13 2.57
687 693 4.525912 AGGAAATCAACTGGACATTTGC 57.474 40.909 0.00 0.00 0.00 3.68
696 702 5.126869 TCAACTGGACATTTGCTTTCTTGAA 59.873 36.000 0.00 0.00 0.00 2.69
698 704 6.165700 ACTGGACATTTGCTTTCTTGAATT 57.834 33.333 0.00 0.00 0.00 2.17
699 705 5.987347 ACTGGACATTTGCTTTCTTGAATTG 59.013 36.000 0.00 0.00 0.00 2.32
700 706 4.751098 TGGACATTTGCTTTCTTGAATTGC 59.249 37.500 0.00 0.00 0.00 3.56
701 707 4.152938 GGACATTTGCTTTCTTGAATTGCC 59.847 41.667 0.00 0.00 0.00 4.52
703 709 6.100404 ACATTTGCTTTCTTGAATTGCCTA 57.900 33.333 0.00 0.00 0.00 3.93
725 733 6.635239 CCTATAATGTTTACGCGGGAAAAATG 59.365 38.462 12.47 0.00 0.00 2.32
826 834 2.686816 CCCGCCACGATTTTCGCTT 61.687 57.895 0.00 0.00 45.12 4.68
827 835 1.226018 CCGCCACGATTTTCGCTTC 60.226 57.895 0.00 0.00 45.12 3.86
1255 1268 2.430244 CTGTTCCCGTCCACGTCG 60.430 66.667 0.00 0.00 37.74 5.12
1290 1303 1.592223 CCTCCTCGTGTTCTGGTCC 59.408 63.158 0.00 0.00 0.00 4.46
1306 1319 1.433534 GTCCTGCAGCTGACTTGTAC 58.566 55.000 20.43 3.22 0.00 2.90
1573 1589 1.315257 AAATCGAAGCGGCCAAGCAT 61.315 50.000 2.24 0.00 40.15 3.79
1651 1668 0.241749 TTGTAGCTCCACCGTACGTG 59.758 55.000 15.21 12.06 42.62 4.49
1655 1672 1.226603 GCTCCACCGTACGTGCTAG 60.227 63.158 15.21 12.36 41.53 3.42
1657 1674 1.372582 CTCCACCGTACGTGCTAGTA 58.627 55.000 15.21 0.00 41.53 1.82
1658 1675 1.063174 CTCCACCGTACGTGCTAGTAC 59.937 57.143 15.21 0.08 41.53 2.73
1659 1676 1.089920 CCACCGTACGTGCTAGTACT 58.910 55.000 15.21 0.00 43.42 2.73
1680 1697 8.432805 AGTACTTTTCTCATCTTCTTCTTCCAA 58.567 33.333 0.00 0.00 0.00 3.53
1751 1768 4.069304 GTTTTATTTTTGAACCCCCTGCC 58.931 43.478 0.00 0.00 0.00 4.85
1776 1793 1.665679 GATGTTAGTGTGGCGGTGATG 59.334 52.381 0.00 0.00 0.00 3.07
1795 1812 1.554617 TGGCAATTCGAGAGATGGTGA 59.445 47.619 0.00 0.00 41.60 4.02
1818 1835 1.604593 GGATGGTGTGCTGGTTGCT 60.605 57.895 0.00 0.00 43.37 3.91
1859 1876 0.751643 AATAATGGTGGAGGCGGCAC 60.752 55.000 13.08 4.32 0.00 5.01
1877 1894 5.285651 CGGCACAAGATTTTAAGTTGGAAA 58.714 37.500 0.00 0.00 0.00 3.13
1882 1899 8.084684 GCACAAGATTTTAAGTTGGAAAGAGAT 58.915 33.333 0.00 0.00 0.00 2.75
1938 1955 8.974060 ATCACAACCATTTATTCTTATACGGT 57.026 30.769 0.00 0.00 0.00 4.83
1939 1956 8.795842 TCACAACCATTTATTCTTATACGGTT 57.204 30.769 0.00 0.00 35.94 4.44
1940 1957 9.233649 TCACAACCATTTATTCTTATACGGTTT 57.766 29.630 0.00 0.00 33.32 3.27
1941 1958 9.849166 CACAACCATTTATTCTTATACGGTTTT 57.151 29.630 0.00 0.00 33.32 2.43
1942 1959 9.849166 ACAACCATTTATTCTTATACGGTTTTG 57.151 29.630 0.00 0.00 33.32 2.44
1943 1960 8.803799 CAACCATTTATTCTTATACGGTTTTGC 58.196 33.333 0.00 0.00 33.32 3.68
1944 1961 8.288689 ACCATTTATTCTTATACGGTTTTGCT 57.711 30.769 0.00 0.00 0.00 3.91
1945 1962 9.398538 ACCATTTATTCTTATACGGTTTTGCTA 57.601 29.630 0.00 0.00 0.00 3.49
1949 1966 9.777575 TTTATTCTTATACGGTTTTGCTAAAGC 57.222 29.630 11.98 11.98 42.50 3.51
1971 1988 4.863491 CACATCTGTGCCCTAAATATTGC 58.137 43.478 0.00 0.00 39.39 3.56
1972 1989 4.338964 CACATCTGTGCCCTAAATATTGCA 59.661 41.667 0.00 0.00 39.39 4.08
1981 1998 7.838079 TGCCCTAAATATTGCACATCTAAAT 57.162 32.000 0.00 0.00 0.00 1.40
1982 1999 7.885297 TGCCCTAAATATTGCACATCTAAATC 58.115 34.615 0.00 0.00 0.00 2.17
1983 2000 7.725397 TGCCCTAAATATTGCACATCTAAATCT 59.275 33.333 0.00 0.00 0.00 2.40
1984 2001 8.579863 GCCCTAAATATTGCACATCTAAATCTT 58.420 33.333 0.00 0.00 0.00 2.40
2006 2023 9.698309 ATCTTATGTAGTACTTGATTTCATCCG 57.302 33.333 0.00 0.00 0.00 4.18
2007 2024 8.141909 TCTTATGTAGTACTTGATTTCATCCGG 58.858 37.037 0.00 0.00 0.00 5.14
2008 2025 5.925506 TGTAGTACTTGATTTCATCCGGA 57.074 39.130 6.61 6.61 0.00 5.14
2009 2026 5.902681 TGTAGTACTTGATTTCATCCGGAG 58.097 41.667 11.34 2.05 0.00 4.63
2010 2027 5.655090 TGTAGTACTTGATTTCATCCGGAGA 59.345 40.000 11.34 4.79 0.00 3.71
2011 2028 5.878406 AGTACTTGATTTCATCCGGAGAT 57.122 39.130 11.34 0.77 0.00 2.75
2012 2029 6.240549 AGTACTTGATTTCATCCGGAGATT 57.759 37.500 11.34 0.00 0.00 2.40
2013 2030 6.284459 AGTACTTGATTTCATCCGGAGATTC 58.716 40.000 11.34 8.45 0.00 2.52
2014 2031 4.455606 ACTTGATTTCATCCGGAGATTCC 58.544 43.478 11.34 0.00 0.00 3.01
2015 2032 4.164988 ACTTGATTTCATCCGGAGATTCCT 59.835 41.667 11.34 0.00 33.30 3.36
2016 2033 4.077300 TGATTTCATCCGGAGATTCCTG 57.923 45.455 11.34 1.50 33.30 3.86
2017 2034 2.332063 TTTCATCCGGAGATTCCTGC 57.668 50.000 11.34 0.00 33.30 4.85
2018 2035 1.203237 TTCATCCGGAGATTCCTGCA 58.797 50.000 11.34 0.00 33.30 4.41
2019 2036 1.427809 TCATCCGGAGATTCCTGCAT 58.572 50.000 11.34 0.00 33.30 3.96
2020 2037 1.071228 TCATCCGGAGATTCCTGCATG 59.929 52.381 11.34 0.00 33.30 4.06
2021 2038 0.399454 ATCCGGAGATTCCTGCATGG 59.601 55.000 11.34 0.00 33.30 3.66
2022 2039 0.982852 TCCGGAGATTCCTGCATGGT 60.983 55.000 0.00 0.00 33.30 3.55
2023 2040 0.758734 CCGGAGATTCCTGCATGGTA 59.241 55.000 0.00 0.00 33.30 3.25
2024 2041 1.349026 CCGGAGATTCCTGCATGGTAT 59.651 52.381 0.00 0.00 33.30 2.73
2025 2042 2.613977 CCGGAGATTCCTGCATGGTATC 60.614 54.545 0.00 11.35 41.31 2.24
2026 2043 2.037641 CGGAGATTCCTGCATGGTATCA 59.962 50.000 17.60 0.00 42.82 2.15
2027 2044 3.307269 CGGAGATTCCTGCATGGTATCAT 60.307 47.826 17.60 0.00 42.82 2.45
2028 2045 4.660168 GGAGATTCCTGCATGGTATCATT 58.340 43.478 17.60 4.84 42.82 2.57
2029 2046 4.699257 GGAGATTCCTGCATGGTATCATTC 59.301 45.833 17.60 10.74 42.82 2.67
2030 2047 5.514484 GGAGATTCCTGCATGGTATCATTCT 60.514 44.000 17.60 4.51 42.82 2.40
2031 2048 5.950023 AGATTCCTGCATGGTATCATTCTT 58.050 37.500 17.60 2.00 42.82 2.52
2032 2049 7.083062 AGATTCCTGCATGGTATCATTCTTA 57.917 36.000 17.60 0.00 42.82 2.10
2073 2090 8.365060 TGAAATGACTCATGACCCAATATTTT 57.635 30.769 0.00 0.00 0.00 1.82
2190 2207 5.772521 ACTCAATGCTTTCGCTAAATTTGT 58.227 33.333 0.00 0.00 36.97 2.83
2200 2217 9.763465 GCTTTCGCTAAATTTGTAGTACAATAA 57.237 29.630 16.26 3.28 38.00 1.40
2228 2245 8.487313 TGTATTCGCTGTATAAAAACATCAGT 57.513 30.769 0.00 0.00 0.00 3.41
2235 2252 7.409661 CGCTGTATAAAAACATCAGTGCTTTTG 60.410 37.037 0.00 0.00 35.18 2.44
2239 2256 9.076596 GTATAAAAACATCAGTGCTTTTGATCC 57.923 33.333 0.00 0.00 35.18 3.36
2241 2258 5.796424 AAACATCAGTGCTTTTGATCCTT 57.204 34.783 0.00 0.00 33.14 3.36
2255 2272 9.260002 GCTTTTGATCCTTGATTTAGAAACAAA 57.740 29.630 0.00 0.00 0.00 2.83
2331 2348 2.755103 GGAGCCAATCAACCAAACTAGG 59.245 50.000 0.00 0.00 0.00 3.02
2332 2349 3.561313 GGAGCCAATCAACCAAACTAGGA 60.561 47.826 0.00 0.00 0.00 2.94
2333 2350 3.690460 AGCCAATCAACCAAACTAGGAG 58.310 45.455 0.00 0.00 0.00 3.69
2334 2351 3.074538 AGCCAATCAACCAAACTAGGAGT 59.925 43.478 0.00 0.00 0.00 3.85
2336 2353 4.636206 GCCAATCAACCAAACTAGGAGTAG 59.364 45.833 0.00 0.00 0.00 2.57
2337 2354 4.636206 CCAATCAACCAAACTAGGAGTAGC 59.364 45.833 0.00 0.00 0.00 3.58
2338 2355 5.491982 CAATCAACCAAACTAGGAGTAGCT 58.508 41.667 0.00 0.00 0.00 3.32
2339 2356 6.351881 CCAATCAACCAAACTAGGAGTAGCTA 60.352 42.308 0.00 0.00 0.00 3.32
2340 2357 6.869206 ATCAACCAAACTAGGAGTAGCTAA 57.131 37.500 0.00 0.00 0.00 3.09
2341 2358 6.675413 TCAACCAAACTAGGAGTAGCTAAA 57.325 37.500 0.00 0.00 0.00 1.85
2342 2359 7.253905 TCAACCAAACTAGGAGTAGCTAAAT 57.746 36.000 0.00 0.00 0.00 1.40
2351 2368 9.517868 AACTAGGAGTAGCTAAATATATGTCGT 57.482 33.333 0.00 0.00 0.00 4.34
2352 2369 9.517868 ACTAGGAGTAGCTAAATATATGTCGTT 57.482 33.333 0.00 0.00 0.00 3.85
2355 2372 8.021973 AGGAGTAGCTAAATATATGTCGTTTCG 58.978 37.037 0.00 0.00 0.00 3.46
2356 2373 7.806960 GGAGTAGCTAAATATATGTCGTTTCGT 59.193 37.037 0.00 0.00 0.00 3.85
2357 2374 9.178427 GAGTAGCTAAATATATGTCGTTTCGTT 57.822 33.333 0.00 0.00 0.00 3.85
2361 2378 8.847567 AGCTAAATATATGTCGTTTCGTTATCG 58.152 33.333 0.00 0.00 38.55 2.92
2362 2379 8.633408 GCTAAATATATGTCGTTTCGTTATCGT 58.367 33.333 0.00 0.00 38.33 3.73
2371 2388 4.333649 TCGTTTCGTTATCGTATCCAGACT 59.666 41.667 0.00 0.00 38.33 3.24
2385 2402 4.663444 GACTGCTCGCTGTCTGTT 57.337 55.556 18.01 0.00 40.32 3.16
2400 2417 1.346395 TCTGTTTGGATACGTGCACCT 59.654 47.619 12.15 1.77 42.51 4.00
2406 2423 2.945456 TGGATACGTGCACCTATCTCT 58.055 47.619 25.34 2.13 42.51 3.10
2421 2438 6.205658 CACCTATCTCTCGACAGTGATTCATA 59.794 42.308 0.00 0.00 35.09 2.15
2527 2559 3.974401 CGCATGCTCGGGTTAATTAATTG 59.026 43.478 17.13 0.00 0.00 2.32
2530 2562 5.687285 GCATGCTCGGGTTAATTAATTGAAG 59.313 40.000 11.37 0.00 0.00 3.02
2564 2600 5.105310 AGGACTAAAGCTAAATCGCTCTTCA 60.105 40.000 0.00 0.00 39.86 3.02
2565 2601 5.755861 GGACTAAAGCTAAATCGCTCTTCAT 59.244 40.000 0.00 0.00 39.86 2.57
2566 2602 6.074034 GGACTAAAGCTAAATCGCTCTTCATC 60.074 42.308 0.00 0.00 39.86 2.92
2567 2603 6.341316 ACTAAAGCTAAATCGCTCTTCATCA 58.659 36.000 0.00 0.00 39.86 3.07
2569 2605 6.690194 AAAGCTAAATCGCTCTTCATCAAT 57.310 33.333 0.00 0.00 39.86 2.57
2577 2613 3.561310 TCGCTCTTCATCAATATGGCAAC 59.439 43.478 0.00 0.00 33.61 4.17
2593 2629 3.053693 TGGCAACTGGCAGGAATTACTAT 60.054 43.478 20.34 0.00 46.12 2.12
2815 2851 2.693762 CGTCGTTCCCGGTAGCAGA 61.694 63.158 0.00 0.00 33.95 4.26
2845 2881 5.655974 TGCTATCAGTTCTGAGACTCAATCT 59.344 40.000 6.61 2.65 41.91 2.40
3031 3067 0.034380 AGGAGATGGACTTCGACGGA 60.034 55.000 0.00 0.00 0.00 4.69
3294 3330 3.535561 ACTTGTGCCTACATGCATCTAC 58.464 45.455 0.00 0.00 44.30 2.59
3295 3331 3.198635 ACTTGTGCCTACATGCATCTACT 59.801 43.478 0.00 0.00 44.30 2.57
3296 3332 3.912496 TGTGCCTACATGCATCTACTT 57.088 42.857 0.00 0.00 44.30 2.24
3297 3333 3.797039 TGTGCCTACATGCATCTACTTC 58.203 45.455 0.00 0.00 44.30 3.01
3298 3334 3.134458 GTGCCTACATGCATCTACTTCC 58.866 50.000 0.00 0.00 44.30 3.46
3299 3335 3.041211 TGCCTACATGCATCTACTTCCT 58.959 45.455 0.00 0.00 36.04 3.36
3300 3336 3.070159 TGCCTACATGCATCTACTTCCTC 59.930 47.826 0.00 0.00 36.04 3.71
3301 3337 3.556004 GCCTACATGCATCTACTTCCTCC 60.556 52.174 0.00 0.00 0.00 4.30
3302 3338 2.898729 ACATGCATCTACTTCCTCCG 57.101 50.000 0.00 0.00 0.00 4.63
3303 3339 2.111384 ACATGCATCTACTTCCTCCGT 58.889 47.619 0.00 0.00 0.00 4.69
3304 3340 2.501723 ACATGCATCTACTTCCTCCGTT 59.498 45.455 0.00 0.00 0.00 4.44
3305 3341 2.961526 TGCATCTACTTCCTCCGTTC 57.038 50.000 0.00 0.00 0.00 3.95
3306 3342 1.480954 TGCATCTACTTCCTCCGTTCC 59.519 52.381 0.00 0.00 0.00 3.62
3307 3343 1.202545 GCATCTACTTCCTCCGTTCCC 60.203 57.143 0.00 0.00 0.00 3.97
3308 3344 2.108168 CATCTACTTCCTCCGTTCCCA 58.892 52.381 0.00 0.00 0.00 4.37
3309 3345 2.314071 TCTACTTCCTCCGTTCCCAA 57.686 50.000 0.00 0.00 0.00 4.12
3310 3346 2.612000 TCTACTTCCTCCGTTCCCAAA 58.388 47.619 0.00 0.00 0.00 3.28
3311 3347 3.178865 TCTACTTCCTCCGTTCCCAAAT 58.821 45.455 0.00 0.00 0.00 2.32
3312 3348 4.355549 TCTACTTCCTCCGTTCCCAAATA 58.644 43.478 0.00 0.00 0.00 1.40
3313 3349 4.966805 TCTACTTCCTCCGTTCCCAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
3314 3350 6.138263 TCTACTTCCTCCGTTCCCAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
3315 3351 5.703730 ACTTCCTCCGTTCCCAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
3316 3352 5.681639 ACTTCCTCCGTTCCCAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
3317 3353 5.191124 ACTTCCTCCGTTCCCAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
3318 3354 5.286267 TCCTCCGTTCCCAAATATAAGTC 57.714 43.478 0.00 0.00 0.00 3.01
3319 3355 4.966805 TCCTCCGTTCCCAAATATAAGTCT 59.033 41.667 0.00 0.00 0.00 3.24
3320 3356 5.427481 TCCTCCGTTCCCAAATATAAGTCTT 59.573 40.000 0.00 0.00 0.00 3.01
3321 3357 6.069847 TCCTCCGTTCCCAAATATAAGTCTTT 60.070 38.462 0.00 0.00 0.00 2.52
3322 3358 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
3323 3359 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
3324 3360 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
3325 3361 8.202137 TCCGTTCCCAAATATAAGTCTTTCTAG 58.798 37.037 0.00 0.00 0.00 2.43
3326 3362 8.202137 CCGTTCCCAAATATAAGTCTTTCTAGA 58.798 37.037 0.00 0.00 0.00 2.43
3327 3363 9.250624 CGTTCCCAAATATAAGTCTTTCTAGAG 57.749 37.037 0.00 0.00 0.00 2.43
3340 3376 9.702253 AAGTCTTTCTAGAGATTACACTATGGA 57.298 33.333 0.00 0.00 0.00 3.41
3341 3377 9.127277 AGTCTTTCTAGAGATTACACTATGGAC 57.873 37.037 0.00 0.00 0.00 4.02
3342 3378 9.127277 GTCTTTCTAGAGATTACACTATGGACT 57.873 37.037 0.00 0.00 0.00 3.85
3345 3381 9.916360 TTTCTAGAGATTACACTATGGACTACA 57.084 33.333 0.00 0.00 0.00 2.74
3349 3385 8.325421 AGAGATTACACTATGGACTACATACG 57.675 38.462 0.00 0.00 41.03 3.06
3350 3386 7.390996 AGAGATTACACTATGGACTACATACGG 59.609 40.741 0.00 0.00 41.03 4.02
3351 3387 7.229308 AGATTACACTATGGACTACATACGGA 58.771 38.462 0.00 0.00 41.03 4.69
3352 3388 6.872628 TTACACTATGGACTACATACGGAG 57.127 41.667 0.00 0.00 41.03 4.63
3353 3389 3.568853 ACACTATGGACTACATACGGAGC 59.431 47.826 0.00 0.00 41.03 4.70
3354 3390 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
3355 3391 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
3356 3392 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
3357 3393 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
3358 3394 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
3359 3395 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
3360 3396 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
3361 3397 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3362 3398 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3363 3399 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3364 3400 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3365 3401 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3366 3402 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3367 3403 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3368 3404 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3369 3405 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3370 3406 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3371 3407 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3372 3408 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3414 3450 5.348986 ACATCTGTATGTAGTTTGTAGCGG 58.651 41.667 0.00 0.00 44.66 5.52
3415 3451 5.126545 ACATCTGTATGTAGTTTGTAGCGGA 59.873 40.000 0.00 0.00 44.66 5.54
3416 3452 5.648178 TCTGTATGTAGTTTGTAGCGGAA 57.352 39.130 0.00 0.00 0.00 4.30
3417 3453 6.216801 TCTGTATGTAGTTTGTAGCGGAAT 57.783 37.500 0.00 0.00 0.00 3.01
3418 3454 6.040247 TCTGTATGTAGTTTGTAGCGGAATG 58.960 40.000 0.00 0.00 0.00 2.67
3419 3455 5.726397 TGTATGTAGTTTGTAGCGGAATGT 58.274 37.500 0.00 0.00 0.00 2.71
3420 3456 5.808540 TGTATGTAGTTTGTAGCGGAATGTC 59.191 40.000 0.00 0.00 0.00 3.06
3421 3457 4.530710 TGTAGTTTGTAGCGGAATGTCT 57.469 40.909 0.00 0.00 0.00 3.41
3422 3458 5.648178 TGTAGTTTGTAGCGGAATGTCTA 57.352 39.130 0.00 0.00 0.00 2.59
3423 3459 6.028146 TGTAGTTTGTAGCGGAATGTCTAA 57.972 37.500 0.00 0.00 0.00 2.10
3424 3460 6.457355 TGTAGTTTGTAGCGGAATGTCTAAA 58.543 36.000 0.00 0.00 0.00 1.85
3425 3461 6.930164 TGTAGTTTGTAGCGGAATGTCTAAAA 59.070 34.615 0.00 0.00 0.00 1.52
3426 3462 6.870971 AGTTTGTAGCGGAATGTCTAAAAA 57.129 33.333 0.00 0.00 0.00 1.94
3427 3463 6.899114 AGTTTGTAGCGGAATGTCTAAAAAG 58.101 36.000 0.00 0.00 0.00 2.27
3428 3464 6.708949 AGTTTGTAGCGGAATGTCTAAAAAGA 59.291 34.615 0.00 0.00 0.00 2.52
3429 3465 6.476243 TTGTAGCGGAATGTCTAAAAAGAC 57.524 37.500 0.00 0.00 39.15 3.01
3430 3466 5.790593 TGTAGCGGAATGTCTAAAAAGACT 58.209 37.500 7.04 0.00 39.41 3.24
3431 3467 6.228258 TGTAGCGGAATGTCTAAAAAGACTT 58.772 36.000 7.04 0.00 39.41 3.01
3432 3468 7.380536 TGTAGCGGAATGTCTAAAAAGACTTA 58.619 34.615 7.04 0.00 39.41 2.24
3433 3469 8.038944 TGTAGCGGAATGTCTAAAAAGACTTAT 58.961 33.333 7.04 0.00 39.41 1.73
3434 3470 9.525409 GTAGCGGAATGTCTAAAAAGACTTATA 57.475 33.333 7.04 0.00 39.41 0.98
3435 3471 8.649973 AGCGGAATGTCTAAAAAGACTTATAG 57.350 34.615 7.04 0.00 39.41 1.31
3436 3472 8.475639 AGCGGAATGTCTAAAAAGACTTATAGA 58.524 33.333 7.04 6.57 39.41 1.98
3437 3473 8.756864 GCGGAATGTCTAAAAAGACTTATAGAG 58.243 37.037 9.70 1.87 39.41 2.43
3438 3474 9.804758 CGGAATGTCTAAAAAGACTTATAGAGT 57.195 33.333 9.70 2.41 42.70 3.24
3449 3485 9.804758 AAAAGACTTATAGAGTATTCAGGAACG 57.195 33.333 0.00 0.00 38.80 3.95
3450 3486 7.513371 AGACTTATAGAGTATTCAGGAACGG 57.487 40.000 0.00 0.00 39.19 4.44
3451 3487 7.288560 AGACTTATAGAGTATTCAGGAACGGA 58.711 38.462 0.00 0.00 39.19 4.69
3452 3488 7.446013 AGACTTATAGAGTATTCAGGAACGGAG 59.554 40.741 0.00 0.00 39.19 4.63
3453 3489 6.490721 ACTTATAGAGTATTCAGGAACGGAGG 59.509 42.308 0.00 0.00 36.65 4.30
3454 3490 2.389715 AGAGTATTCAGGAACGGAGGG 58.610 52.381 0.00 0.00 31.97 4.30
3455 3491 2.024273 AGAGTATTCAGGAACGGAGGGA 60.024 50.000 0.00 0.00 31.97 4.20
3456 3492 2.362717 GAGTATTCAGGAACGGAGGGAG 59.637 54.545 0.00 0.00 31.97 4.30
3457 3493 2.108970 GTATTCAGGAACGGAGGGAGT 58.891 52.381 0.00 0.00 31.97 3.85
3458 3494 2.544844 ATTCAGGAACGGAGGGAGTA 57.455 50.000 0.00 0.00 31.97 2.59
3459 3495 2.544844 TTCAGGAACGGAGGGAGTAT 57.455 50.000 0.00 0.00 31.97 2.12
3460 3496 3.675348 TTCAGGAACGGAGGGAGTATA 57.325 47.619 0.00 0.00 31.97 1.47
3769 3824 7.595502 CAGTTAGGTGGTTTAGATCGATATGTC 59.404 40.741 2.01 0.00 0.00 3.06
3770 3825 7.287005 AGTTAGGTGGTTTAGATCGATATGTCA 59.713 37.037 2.01 0.00 0.00 3.58
4081 4142 7.578310 ACACCATTCTATCTTGAAATGGATG 57.422 36.000 17.68 13.90 33.26 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 6.435430 TTTGTATCATGCAAGTGTGGATAC 57.565 37.500 0.00 0.00 40.27 2.24
111 113 4.320494 CGGCTGAAAACTGACTAGCATTTT 60.320 41.667 0.00 0.00 36.15 1.82
112 114 3.189287 CGGCTGAAAACTGACTAGCATTT 59.811 43.478 0.00 0.00 36.15 2.32
113 115 2.744202 CGGCTGAAAACTGACTAGCATT 59.256 45.455 0.00 0.00 36.15 3.56
123 125 6.806739 GCATTTTAATCTAACGGCTGAAAACT 59.193 34.615 0.00 0.00 0.00 2.66
124 126 6.237201 CGCATTTTAATCTAACGGCTGAAAAC 60.237 38.462 0.00 0.00 0.00 2.43
149 154 2.287769 GAGGAAGAAGGAGCAGCAATC 58.712 52.381 0.00 0.00 0.00 2.67
173 178 0.613777 GAAGGAAGGAAGAAGGCCGA 59.386 55.000 0.00 0.00 0.00 5.54
206 211 2.512476 GAGGAGAGGGTAGAGGAAGACT 59.488 54.545 0.00 0.00 0.00 3.24
208 213 1.854280 GGAGGAGAGGGTAGAGGAAGA 59.146 57.143 0.00 0.00 0.00 2.87
242 247 4.022242 AGACATTCATCCGTAATAGGACCG 60.022 45.833 0.00 0.00 44.07 4.79
248 253 5.029807 TGGCAAGACATTCATCCGTAATA 57.970 39.130 0.00 0.00 0.00 0.98
251 256 3.342377 TTGGCAAGACATTCATCCGTA 57.658 42.857 0.00 0.00 0.00 4.02
254 259 2.094026 GGGTTTGGCAAGACATTCATCC 60.094 50.000 0.00 0.00 0.00 3.51
259 264 2.397597 ACAAGGGTTTGGCAAGACATT 58.602 42.857 0.00 0.00 38.66 2.71
265 270 0.457851 CGTCAACAAGGGTTTGGCAA 59.542 50.000 0.00 0.00 38.66 4.52
267 272 0.030235 GTCGTCAACAAGGGTTTGGC 59.970 55.000 0.00 0.00 38.66 4.52
296 301 3.574780 AGGCGCTTCCTTAAACGC 58.425 55.556 7.64 0.00 44.75 4.84
310 315 4.301628 CTGGAAGTCACAATGAAAAAGGC 58.698 43.478 0.00 0.00 0.00 4.35
350 355 3.050275 GACACCGTGGCCAAGCTC 61.050 66.667 7.24 0.00 0.00 4.09
370 375 0.179197 CGAGCACGAGACGTACACAT 60.179 55.000 0.00 0.00 38.32 3.21
371 376 1.205820 CGAGCACGAGACGTACACA 59.794 57.895 0.00 0.00 38.32 3.72
372 377 1.511464 CCGAGCACGAGACGTACAC 60.511 63.158 4.70 0.00 38.32 2.90
373 378 2.683859 CCCGAGCACGAGACGTACA 61.684 63.158 4.70 0.00 38.32 2.90
374 379 2.099831 CCCGAGCACGAGACGTAC 59.900 66.667 4.70 0.00 38.32 3.67
375 380 3.807538 GCCCGAGCACGAGACGTA 61.808 66.667 4.70 0.00 38.32 3.57
384 389 1.539496 GGATTACATAACGCCCGAGCA 60.539 52.381 0.00 0.00 39.83 4.26
403 408 6.618379 GCCTTTTTATTTTGATTGTTGCTCGG 60.618 38.462 0.00 0.00 0.00 4.63
412 417 7.310671 GGAGAAGGGAGCCTTTTTATTTTGATT 60.311 37.037 0.00 0.00 44.82 2.57
429 435 1.080354 ATCACGGGTGGAGAAGGGA 59.920 57.895 0.00 0.00 0.00 4.20
466 472 0.933796 GCTTGCTAGGACATCGCTTC 59.066 55.000 0.00 0.00 0.00 3.86
505 511 0.949105 GCTGGACAACACGATCGGTT 60.949 55.000 20.98 16.84 0.00 4.44
522 528 1.751924 GGAGTAGACAATGTCCGAGCT 59.248 52.381 10.12 3.24 32.18 4.09
523 529 2.211353 GGAGTAGACAATGTCCGAGC 57.789 55.000 10.12 0.00 32.18 5.03
527 533 1.202428 GGCTCGGAGTAGACAATGTCC 60.202 57.143 10.12 0.00 32.18 4.02
528 534 1.534175 CGGCTCGGAGTAGACAATGTC 60.534 57.143 5.02 5.02 0.00 3.06
529 535 0.456221 CGGCTCGGAGTAGACAATGT 59.544 55.000 6.90 0.00 0.00 2.71
531 537 1.437986 GCGGCTCGGAGTAGACAAT 59.562 57.895 6.90 0.00 0.00 2.71
532 538 2.882876 GCGGCTCGGAGTAGACAA 59.117 61.111 6.90 0.00 0.00 3.18
534 540 2.446753 GATCGCGGCTCGGAGTAGAC 62.447 65.000 6.13 0.00 39.05 2.59
535 541 2.203167 ATCGCGGCTCGGAGTAGA 60.203 61.111 6.13 2.08 39.05 2.59
536 542 2.060004 TTGATCGCGGCTCGGAGTAG 62.060 60.000 6.13 2.38 39.05 2.57
537 543 1.452953 ATTGATCGCGGCTCGGAGTA 61.453 55.000 6.13 0.00 39.05 2.59
538 544 1.452953 TATTGATCGCGGCTCGGAGT 61.453 55.000 6.13 0.00 39.05 3.85
539 545 0.730834 CTATTGATCGCGGCTCGGAG 60.731 60.000 6.13 0.00 39.05 4.63
540 546 1.285950 CTATTGATCGCGGCTCGGA 59.714 57.895 6.13 0.00 39.05 4.55
541 547 1.734477 CCTATTGATCGCGGCTCGG 60.734 63.158 6.13 0.00 39.05 4.63
542 548 0.318699 TTCCTATTGATCGCGGCTCG 60.319 55.000 6.13 0.00 40.15 5.03
543 549 1.140816 GTTCCTATTGATCGCGGCTC 58.859 55.000 6.13 4.26 0.00 4.70
544 550 0.464036 TGTTCCTATTGATCGCGGCT 59.536 50.000 6.13 0.00 0.00 5.52
545 551 0.582005 GTGTTCCTATTGATCGCGGC 59.418 55.000 6.13 0.00 0.00 6.53
546 552 1.217882 GGTGTTCCTATTGATCGCGG 58.782 55.000 6.13 0.00 0.00 6.46
547 553 0.852777 CGGTGTTCCTATTGATCGCG 59.147 55.000 0.00 0.00 0.00 5.87
548 554 0.582005 GCGGTGTTCCTATTGATCGC 59.418 55.000 0.00 0.00 35.34 4.58
549 555 1.217882 GGCGGTGTTCCTATTGATCG 58.782 55.000 0.00 0.00 0.00 3.69
550 556 1.141053 AGGGCGGTGTTCCTATTGATC 59.859 52.381 0.00 0.00 0.00 2.92
551 557 1.141053 GAGGGCGGTGTTCCTATTGAT 59.859 52.381 0.00 0.00 32.74 2.57
552 558 0.539986 GAGGGCGGTGTTCCTATTGA 59.460 55.000 0.00 0.00 32.74 2.57
553 559 0.463833 GGAGGGCGGTGTTCCTATTG 60.464 60.000 0.00 0.00 32.74 1.90
554 560 1.632965 GGGAGGGCGGTGTTCCTATT 61.633 60.000 0.00 0.00 32.74 1.73
555 561 2.070650 GGGAGGGCGGTGTTCCTAT 61.071 63.158 0.00 0.00 32.74 2.57
556 562 2.686106 GGGAGGGCGGTGTTCCTA 60.686 66.667 0.00 0.00 32.74 2.94
559 565 3.623703 GAAGGGGAGGGCGGTGTTC 62.624 68.421 0.00 0.00 0.00 3.18
560 566 3.647771 GAAGGGGAGGGCGGTGTT 61.648 66.667 0.00 0.00 0.00 3.32
561 567 4.658786 AGAAGGGGAGGGCGGTGT 62.659 66.667 0.00 0.00 0.00 4.16
562 568 3.787001 GAGAAGGGGAGGGCGGTG 61.787 72.222 0.00 0.00 0.00 4.94
563 569 3.986116 GAGAGAAGGGGAGGGCGGT 62.986 68.421 0.00 0.00 0.00 5.68
564 570 3.157949 GAGAGAAGGGGAGGGCGG 61.158 72.222 0.00 0.00 0.00 6.13
565 571 3.157949 GGAGAGAAGGGGAGGGCG 61.158 72.222 0.00 0.00 0.00 6.13
566 572 1.616628 TTGGAGAGAAGGGGAGGGC 60.617 63.158 0.00 0.00 0.00 5.19
567 573 1.631071 GCTTGGAGAGAAGGGGAGGG 61.631 65.000 0.00 0.00 0.00 4.30
568 574 0.620121 AGCTTGGAGAGAAGGGGAGG 60.620 60.000 0.00 0.00 0.00 4.30
569 575 1.065564 CAAGCTTGGAGAGAAGGGGAG 60.066 57.143 19.14 0.00 0.00 4.30
570 576 0.987294 CAAGCTTGGAGAGAAGGGGA 59.013 55.000 19.14 0.00 0.00 4.81
571 577 0.679321 GCAAGCTTGGAGAGAAGGGG 60.679 60.000 27.10 0.00 0.00 4.79
572 578 0.679321 GGCAAGCTTGGAGAGAAGGG 60.679 60.000 27.10 0.00 0.00 3.95
573 579 0.679321 GGGCAAGCTTGGAGAGAAGG 60.679 60.000 27.10 0.00 0.00 3.46
574 580 1.023513 CGGGCAAGCTTGGAGAGAAG 61.024 60.000 27.10 0.00 0.00 2.85
575 581 1.003355 CGGGCAAGCTTGGAGAGAA 60.003 57.895 27.10 0.00 0.00 2.87
576 582 2.665000 CGGGCAAGCTTGGAGAGA 59.335 61.111 27.10 0.00 0.00 3.10
611 617 3.354089 CTGAGCTAGCTAGAGTCTTGC 57.646 52.381 25.15 17.51 33.56 4.01
674 680 5.596836 TTCAAGAAAGCAAATGTCCAGTT 57.403 34.783 0.00 0.00 0.00 3.16
696 702 3.500680 CCCGCGTAAACATTATAGGCAAT 59.499 43.478 4.92 0.00 34.66 3.56
698 704 2.102757 TCCCGCGTAAACATTATAGGCA 59.897 45.455 4.92 0.00 34.66 4.75
699 705 2.758009 TCCCGCGTAAACATTATAGGC 58.242 47.619 4.92 0.00 0.00 3.93
700 706 5.738118 TTTTCCCGCGTAAACATTATAGG 57.262 39.130 4.92 0.00 0.00 2.57
701 707 7.411274 TCATTTTTCCCGCGTAAACATTATAG 58.589 34.615 4.92 0.00 0.00 1.31
703 709 6.197364 TCATTTTTCCCGCGTAAACATTAT 57.803 33.333 4.92 0.00 0.00 1.28
725 733 4.566759 ACGCGCCAATATACACATGATATC 59.433 41.667 5.73 0.00 0.00 1.63
780 788 1.285962 GGGGCATATGCATGATAGGGT 59.714 52.381 28.07 0.00 44.36 4.34
826 834 4.612412 GCGTGTGGGGACAACCGA 62.612 66.667 0.00 0.00 46.06 4.69
827 835 4.920112 TGCGTGTGGGGACAACCG 62.920 66.667 0.00 0.00 46.06 4.44
942 950 0.039617 GATCAGGATCTCTCGGTGCG 60.040 60.000 2.05 0.00 35.04 5.34
1075 1087 4.935630 CACGCAGACGAGTGTGTA 57.064 55.556 7.47 0.00 43.21 2.90
1104 1117 4.302455 CATTTCAGTTCGGATAGCTCGAT 58.698 43.478 0.00 0.00 36.49 3.59
1273 1286 0.244994 CAGGACCAGAACACGAGGAG 59.755 60.000 0.00 0.00 0.00 3.69
1290 1303 1.436600 CCAGTACAAGTCAGCTGCAG 58.563 55.000 10.11 10.11 0.00 4.41
1436 1452 0.248539 GTAGTAGCCTTCGTCGCAGG 60.249 60.000 6.56 6.56 34.08 4.85
1504 1520 2.030958 GTCGAAATCCGGCACCGTT 61.031 57.895 8.49 0.00 43.50 4.44
1651 1668 8.996024 AAGAAGAAGATGAGAAAAGTACTAGC 57.004 34.615 0.00 0.00 0.00 3.42
1655 1672 8.608844 TTGGAAGAAGAAGATGAGAAAAGTAC 57.391 34.615 0.00 0.00 0.00 2.73
1657 1674 8.162746 AGATTGGAAGAAGAAGATGAGAAAAGT 58.837 33.333 0.00 0.00 0.00 2.66
1658 1675 8.452534 CAGATTGGAAGAAGAAGATGAGAAAAG 58.547 37.037 0.00 0.00 0.00 2.27
1659 1676 7.392673 CCAGATTGGAAGAAGAAGATGAGAAAA 59.607 37.037 0.00 0.00 40.96 2.29
1714 1731 0.779997 AAAACATCAGGAGGGCAGGT 59.220 50.000 0.00 0.00 0.00 4.00
1722 1739 6.239743 GGGGGTTCAAAAATAAAACATCAGGA 60.240 38.462 0.00 0.00 0.00 3.86
1751 1768 0.744414 CGCCACACTAACATCAGGGG 60.744 60.000 0.00 0.00 0.00 4.79
1776 1793 1.936547 GTCACCATCTCTCGAATTGCC 59.063 52.381 0.00 0.00 0.00 4.52
1818 1835 3.028094 ACGAGGCCCTTCTCTACAATA 57.972 47.619 0.00 0.00 0.00 1.90
1859 1876 8.031277 CCCATCTCTTTCCAACTTAAAATCTTG 58.969 37.037 0.00 0.00 0.00 3.02
1877 1894 1.876473 ACCCTAATCCTCCCCATCTCT 59.124 52.381 0.00 0.00 0.00 3.10
1882 1899 2.369668 TTCAACCCTAATCCTCCCCA 57.630 50.000 0.00 0.00 0.00 4.96
1950 1967 4.535781 TGCAATATTTAGGGCACAGATGT 58.464 39.130 0.00 0.00 0.00 3.06
1957 1974 7.725397 AGATTTAGATGTGCAATATTTAGGGCA 59.275 33.333 0.00 0.00 0.00 5.36
1958 1975 8.115490 AGATTTAGATGTGCAATATTTAGGGC 57.885 34.615 0.00 0.00 0.00 5.19
1989 2006 8.784553 AGGAATCTCCGGATGAAATCAAGTACT 61.785 40.741 3.57 0.00 42.10 2.73
1990 2007 6.686632 AGGAATCTCCGGATGAAATCAAGTAC 60.687 42.308 3.57 0.00 42.10 2.73
1991 2008 5.366768 AGGAATCTCCGGATGAAATCAAGTA 59.633 40.000 3.57 0.00 42.10 2.24
1992 2009 4.164988 AGGAATCTCCGGATGAAATCAAGT 59.835 41.667 3.57 0.00 42.10 3.16
1993 2010 4.514441 CAGGAATCTCCGGATGAAATCAAG 59.486 45.833 3.57 0.00 42.10 3.02
1994 2011 4.454678 CAGGAATCTCCGGATGAAATCAA 58.545 43.478 3.57 0.00 42.10 2.57
1995 2012 3.745480 GCAGGAATCTCCGGATGAAATCA 60.745 47.826 3.57 0.00 42.10 2.57
1996 2013 2.810852 GCAGGAATCTCCGGATGAAATC 59.189 50.000 3.57 7.86 42.75 2.17
1997 2014 2.173356 TGCAGGAATCTCCGGATGAAAT 59.827 45.455 3.57 0.00 42.75 2.17
1998 2015 1.559219 TGCAGGAATCTCCGGATGAAA 59.441 47.619 3.57 0.00 42.75 2.69
1999 2016 1.203237 TGCAGGAATCTCCGGATGAA 58.797 50.000 3.57 0.00 42.75 2.57
2000 2017 1.071228 CATGCAGGAATCTCCGGATGA 59.929 52.381 3.57 5.21 42.75 2.92
2001 2018 1.520494 CATGCAGGAATCTCCGGATG 58.480 55.000 3.57 0.00 42.75 3.51
2002 2019 0.399454 CCATGCAGGAATCTCCGGAT 59.601 55.000 3.57 0.00 42.75 4.18
2003 2020 0.982852 ACCATGCAGGAATCTCCGGA 60.983 55.000 2.93 2.93 42.75 5.14
2004 2021 0.758734 TACCATGCAGGAATCTCCGG 59.241 55.000 0.00 0.00 42.75 5.14
2005 2022 2.037641 TGATACCATGCAGGAATCTCCG 59.962 50.000 0.00 0.00 42.75 4.63
2006 2023 3.777106 TGATACCATGCAGGAATCTCC 57.223 47.619 0.00 0.00 41.22 3.71
2007 2024 5.558818 AGAATGATACCATGCAGGAATCTC 58.441 41.667 0.00 0.00 41.22 2.75
2008 2025 5.579753 AGAATGATACCATGCAGGAATCT 57.420 39.130 0.00 0.00 41.22 2.40
2009 2026 7.934855 ATAAGAATGATACCATGCAGGAATC 57.065 36.000 0.00 3.25 41.22 2.52
2010 2027 9.236006 GTTATAAGAATGATACCATGCAGGAAT 57.764 33.333 0.00 0.00 41.22 3.01
2011 2028 8.439971 AGTTATAAGAATGATACCATGCAGGAA 58.560 33.333 0.00 0.00 41.22 3.36
2012 2029 7.977818 AGTTATAAGAATGATACCATGCAGGA 58.022 34.615 0.00 0.00 41.22 3.86
2013 2030 9.725019 TTAGTTATAAGAATGATACCATGCAGG 57.275 33.333 0.00 0.00 45.67 4.85
2031 2048 9.905713 AGTCATTTCAGCCTTTCATTAGTTATA 57.094 29.630 0.00 0.00 0.00 0.98
2032 2049 8.814038 AGTCATTTCAGCCTTTCATTAGTTAT 57.186 30.769 0.00 0.00 0.00 1.89
2086 2103 5.704053 ACTTAGTCGTTAAATTGAAGGGTGG 59.296 40.000 0.00 0.00 0.00 4.61
2201 2218 9.935682 CTGATGTTTTTATACAGCGAATACAAT 57.064 29.630 0.00 0.00 37.24 2.71
2202 2219 8.941977 ACTGATGTTTTTATACAGCGAATACAA 58.058 29.630 0.00 0.00 37.24 2.41
2203 2220 8.387354 CACTGATGTTTTTATACAGCGAATACA 58.613 33.333 0.00 0.00 37.24 2.29
2204 2221 7.373441 GCACTGATGTTTTTATACAGCGAATAC 59.627 37.037 0.00 0.00 37.24 1.89
2205 2222 7.279981 AGCACTGATGTTTTTATACAGCGAATA 59.720 33.333 0.00 0.00 37.24 1.75
2206 2223 6.094048 AGCACTGATGTTTTTATACAGCGAAT 59.906 34.615 0.00 0.00 37.24 3.34
2207 2224 5.411361 AGCACTGATGTTTTTATACAGCGAA 59.589 36.000 0.00 0.00 37.24 4.70
2208 2225 4.935205 AGCACTGATGTTTTTATACAGCGA 59.065 37.500 0.00 0.00 37.24 4.93
2209 2226 5.221891 AGCACTGATGTTTTTATACAGCG 57.778 39.130 0.00 0.00 37.24 5.18
2210 2227 7.594758 TCAAAAGCACTGATGTTTTTATACAGC 59.405 33.333 2.20 0.00 44.55 4.40
2211 2228 9.630098 ATCAAAAGCACTGATGTTTTTATACAG 57.370 29.630 2.20 0.00 44.55 2.74
2212 2229 9.624697 GATCAAAAGCACTGATGTTTTTATACA 57.375 29.630 2.20 0.00 44.55 2.29
2213 2230 9.076596 GGATCAAAAGCACTGATGTTTTTATAC 57.923 33.333 0.00 0.00 44.55 1.47
2214 2231 9.023962 AGGATCAAAAGCACTGATGTTTTTATA 57.976 29.630 0.00 0.00 44.55 0.98
2215 2232 7.899973 AGGATCAAAAGCACTGATGTTTTTAT 58.100 30.769 0.00 0.00 44.55 1.40
2216 2233 7.288810 AGGATCAAAAGCACTGATGTTTTTA 57.711 32.000 0.00 0.00 44.55 1.52
2221 2238 4.401022 TCAAGGATCAAAAGCACTGATGT 58.599 39.130 0.00 0.00 33.63 3.06
2228 2245 7.950512 TGTTTCTAAATCAAGGATCAAAAGCA 58.049 30.769 0.00 0.00 0.00 3.91
2285 2302 2.664916 CATGGCTTTCCACGTTTTGAG 58.335 47.619 0.00 0.00 46.92 3.02
2309 2326 1.632589 AGTTTGGTTGATTGGCTCCC 58.367 50.000 0.00 0.00 0.00 4.30
2331 2348 8.725212 ACGAAACGACATATATTTAGCTACTC 57.275 34.615 0.00 0.00 0.00 2.59
2336 2353 8.633408 ACGATAACGAAACGACATATATTTAGC 58.367 33.333 0.00 0.00 42.66 3.09
2340 2357 9.282247 GGATACGATAACGAAACGACATATATT 57.718 33.333 0.00 0.00 42.66 1.28
2341 2358 8.453320 TGGATACGATAACGAAACGACATATAT 58.547 33.333 0.00 0.00 42.66 0.86
2342 2359 7.805700 TGGATACGATAACGAAACGACATATA 58.194 34.615 0.00 0.00 42.66 0.86
2345 2362 4.923893 TGGATACGATAACGAAACGACAT 58.076 39.130 0.00 0.00 42.66 3.06
2346 2363 4.094739 TCTGGATACGATAACGAAACGACA 59.905 41.667 0.00 0.00 42.66 4.35
2347 2364 4.435877 GTCTGGATACGATAACGAAACGAC 59.564 45.833 0.00 0.00 42.66 4.34
2348 2365 4.333649 AGTCTGGATACGATAACGAAACGA 59.666 41.667 0.00 0.00 42.66 3.85
2349 2366 4.436847 CAGTCTGGATACGATAACGAAACG 59.563 45.833 0.00 0.00 42.66 3.60
2350 2367 4.206609 GCAGTCTGGATACGATAACGAAAC 59.793 45.833 0.00 0.00 42.66 2.78
2351 2368 4.097437 AGCAGTCTGGATACGATAACGAAA 59.903 41.667 0.00 0.00 42.66 3.46
2352 2369 3.630769 AGCAGTCTGGATACGATAACGAA 59.369 43.478 0.00 0.00 42.66 3.85
2353 2370 3.211865 AGCAGTCTGGATACGATAACGA 58.788 45.455 0.00 0.00 42.66 3.85
2354 2371 3.556513 GAGCAGTCTGGATACGATAACG 58.443 50.000 1.14 0.00 45.75 3.18
2355 2372 3.556513 CGAGCAGTCTGGATACGATAAC 58.443 50.000 1.14 0.00 42.51 1.89
2356 2373 2.031069 GCGAGCAGTCTGGATACGATAA 60.031 50.000 1.14 0.00 42.51 1.75
2357 2374 1.535896 GCGAGCAGTCTGGATACGATA 59.464 52.381 1.14 0.00 42.51 2.92
2358 2375 0.312416 GCGAGCAGTCTGGATACGAT 59.688 55.000 1.14 0.00 42.51 3.73
2359 2376 0.748367 AGCGAGCAGTCTGGATACGA 60.748 55.000 1.14 0.00 42.51 3.43
2360 2377 0.593518 CAGCGAGCAGTCTGGATACG 60.594 60.000 1.14 0.00 42.51 3.06
2361 2378 0.457851 ACAGCGAGCAGTCTGGATAC 59.542 55.000 1.14 0.00 34.76 2.24
2362 2379 0.741326 GACAGCGAGCAGTCTGGATA 59.259 55.000 12.41 0.00 34.76 2.59
2363 2380 0.969917 AGACAGCGAGCAGTCTGGAT 60.970 55.000 19.77 0.00 40.48 3.41
2371 2388 0.035317 ATCCAAACAGACAGCGAGCA 59.965 50.000 0.00 0.00 0.00 4.26
2382 2399 3.196901 AGATAGGTGCACGTATCCAAACA 59.803 43.478 37.47 14.45 41.90 2.83
2385 2402 3.296854 AGAGATAGGTGCACGTATCCAA 58.703 45.455 37.47 16.35 41.90 3.53
2400 2417 7.809546 ACTTATGAATCACTGTCGAGAGATA 57.190 36.000 17.61 3.81 45.19 1.98
2406 2423 4.221924 TCCCAACTTATGAATCACTGTCGA 59.778 41.667 0.00 0.00 0.00 4.20
2461 2478 1.463831 GATGCCATCGATGTCAGATGC 59.536 52.381 23.27 17.77 42.92 3.91
2564 2600 2.091720 TCCTGCCAGTTGCCATATTGAT 60.092 45.455 0.00 0.00 40.16 2.57
2565 2601 1.284491 TCCTGCCAGTTGCCATATTGA 59.716 47.619 0.00 0.00 40.16 2.57
2566 2602 1.766494 TCCTGCCAGTTGCCATATTG 58.234 50.000 0.00 0.00 40.16 1.90
2567 2603 2.530460 TTCCTGCCAGTTGCCATATT 57.470 45.000 0.00 0.00 40.16 1.28
2569 2605 2.530460 AATTCCTGCCAGTTGCCATA 57.470 45.000 0.00 0.00 40.16 2.74
2577 2613 3.393800 CACCGATAGTAATTCCTGCCAG 58.606 50.000 0.00 0.00 0.00 4.85
2815 2851 4.099266 GTCTCAGAACTGATAGCACCAGAT 59.901 45.833 4.96 0.00 39.13 2.90
3186 3222 7.111247 ACTTGGAGTGATCAAATAGAGAGAG 57.889 40.000 0.00 0.00 0.00 3.20
3198 3234 5.474876 ACAGGAAATTCAACTTGGAGTGATC 59.525 40.000 0.00 0.00 0.00 2.92
3294 3330 5.681639 ACTTATATTTGGGAACGGAGGAAG 58.318 41.667 0.00 0.00 0.00 3.46
3295 3331 5.427481 AGACTTATATTTGGGAACGGAGGAA 59.573 40.000 0.00 0.00 0.00 3.36
3296 3332 4.966805 AGACTTATATTTGGGAACGGAGGA 59.033 41.667 0.00 0.00 0.00 3.71
3297 3333 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
3298 3334 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
3299 3335 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
3300 3336 8.202137 TCTAGAAAGACTTATATTTGGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
3301 3337 9.250624 CTCTAGAAAGACTTATATTTGGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
3314 3350 9.702253 TCCATAGTGTAATCTCTAGAAAGACTT 57.298 33.333 0.00 0.00 0.00 3.01
3315 3351 9.127277 GTCCATAGTGTAATCTCTAGAAAGACT 57.873 37.037 0.00 0.00 0.00 3.24
3316 3352 9.127277 AGTCCATAGTGTAATCTCTAGAAAGAC 57.873 37.037 0.00 0.00 0.00 3.01
3319 3355 9.916360 TGTAGTCCATAGTGTAATCTCTAGAAA 57.084 33.333 0.00 0.00 0.00 2.52
3323 3359 9.433153 CGTATGTAGTCCATAGTGTAATCTCTA 57.567 37.037 0.00 0.00 36.71 2.43
3324 3360 7.390996 CCGTATGTAGTCCATAGTGTAATCTCT 59.609 40.741 0.00 0.00 36.71 3.10
3325 3361 7.389884 TCCGTATGTAGTCCATAGTGTAATCTC 59.610 40.741 0.00 0.00 36.71 2.75
3326 3362 7.229308 TCCGTATGTAGTCCATAGTGTAATCT 58.771 38.462 0.00 0.00 36.71 2.40
3327 3363 7.444629 TCCGTATGTAGTCCATAGTGTAATC 57.555 40.000 0.00 0.00 36.71 1.75
3328 3364 6.072064 GCTCCGTATGTAGTCCATAGTGTAAT 60.072 42.308 0.00 0.00 36.71 1.89
3329 3365 5.240183 GCTCCGTATGTAGTCCATAGTGTAA 59.760 44.000 0.00 0.00 36.71 2.41
3330 3366 4.758674 GCTCCGTATGTAGTCCATAGTGTA 59.241 45.833 0.00 0.00 36.71 2.90
3331 3367 3.568853 GCTCCGTATGTAGTCCATAGTGT 59.431 47.826 0.00 0.00 36.71 3.55
3332 3368 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
3333 3369 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
3334 3370 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
3335 3371 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
3336 3372 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
3337 3373 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
3338 3374 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3339 3375 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3340 3376 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3341 3377 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3342 3378 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3343 3379 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3344 3380 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3345 3381 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3346 3382 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3347 3383 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3348 3384 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3349 3385 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3350 3386 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3387 3423 9.841880 CGCTACAAACTACATACAGATGTATAT 57.158 33.333 5.21 0.00 45.42 0.86
3388 3424 8.294577 CCGCTACAAACTACATACAGATGTATA 58.705 37.037 5.21 0.00 45.42 1.47
3389 3425 7.013942 TCCGCTACAAACTACATACAGATGTAT 59.986 37.037 0.00 0.00 45.42 2.29
3390 3426 6.319405 TCCGCTACAAACTACATACAGATGTA 59.681 38.462 0.00 0.00 44.77 2.29
3392 3428 5.588240 TCCGCTACAAACTACATACAGATG 58.412 41.667 0.00 0.00 39.16 2.90
3393 3429 5.847111 TCCGCTACAAACTACATACAGAT 57.153 39.130 0.00 0.00 0.00 2.90
3394 3430 5.648178 TTCCGCTACAAACTACATACAGA 57.352 39.130 0.00 0.00 0.00 3.41
3395 3431 5.810587 ACATTCCGCTACAAACTACATACAG 59.189 40.000 0.00 0.00 0.00 2.74
3396 3432 5.726397 ACATTCCGCTACAAACTACATACA 58.274 37.500 0.00 0.00 0.00 2.29
3397 3433 6.040878 AGACATTCCGCTACAAACTACATAC 58.959 40.000 0.00 0.00 0.00 2.39
3398 3434 6.216801 AGACATTCCGCTACAAACTACATA 57.783 37.500 0.00 0.00 0.00 2.29
3399 3435 5.086104 AGACATTCCGCTACAAACTACAT 57.914 39.130 0.00 0.00 0.00 2.29
3400 3436 4.530710 AGACATTCCGCTACAAACTACA 57.469 40.909 0.00 0.00 0.00 2.74
3401 3437 6.956299 TTTAGACATTCCGCTACAAACTAC 57.044 37.500 0.00 0.00 0.00 2.73
3402 3438 7.874016 TCTTTTTAGACATTCCGCTACAAACTA 59.126 33.333 0.00 0.00 0.00 2.24
3403 3439 6.708949 TCTTTTTAGACATTCCGCTACAAACT 59.291 34.615 0.00 0.00 0.00 2.66
3404 3440 6.795593 GTCTTTTTAGACATTCCGCTACAAAC 59.204 38.462 0.00 0.00 38.59 2.93
3405 3441 6.708949 AGTCTTTTTAGACATTCCGCTACAAA 59.291 34.615 7.92 0.00 41.02 2.83
3406 3442 6.228258 AGTCTTTTTAGACATTCCGCTACAA 58.772 36.000 7.92 0.00 41.02 2.41
3407 3443 5.790593 AGTCTTTTTAGACATTCCGCTACA 58.209 37.500 7.92 0.00 41.02 2.74
3408 3444 6.723131 AAGTCTTTTTAGACATTCCGCTAC 57.277 37.500 7.92 0.00 41.02 3.58
3409 3445 9.745880 CTATAAGTCTTTTTAGACATTCCGCTA 57.254 33.333 7.92 0.00 41.02 4.26
3410 3446 8.475639 TCTATAAGTCTTTTTAGACATTCCGCT 58.524 33.333 7.92 0.00 41.02 5.52
3411 3447 8.644318 TCTATAAGTCTTTTTAGACATTCCGC 57.356 34.615 7.92 0.00 41.02 5.54
3412 3448 9.804758 ACTCTATAAGTCTTTTTAGACATTCCG 57.195 33.333 7.92 0.00 41.02 4.30
3423 3459 9.804758 CGTTCCTGAATACTCTATAAGTCTTTT 57.195 33.333 0.00 0.00 39.55 2.27
3424 3460 8.414778 CCGTTCCTGAATACTCTATAAGTCTTT 58.585 37.037 0.00 0.00 39.55 2.52
3425 3461 7.778853 TCCGTTCCTGAATACTCTATAAGTCTT 59.221 37.037 0.00 0.00 39.55 3.01
3426 3462 7.288560 TCCGTTCCTGAATACTCTATAAGTCT 58.711 38.462 0.00 0.00 39.55 3.24
3427 3463 7.308710 CCTCCGTTCCTGAATACTCTATAAGTC 60.309 44.444 0.00 0.00 39.55 3.01
3428 3464 6.490721 CCTCCGTTCCTGAATACTCTATAAGT 59.509 42.308 0.00 0.00 42.33 2.24
3429 3465 6.071840 CCCTCCGTTCCTGAATACTCTATAAG 60.072 46.154 0.00 0.00 0.00 1.73
3430 3466 5.773680 CCCTCCGTTCCTGAATACTCTATAA 59.226 44.000 0.00 0.00 0.00 0.98
3431 3467 5.074102 TCCCTCCGTTCCTGAATACTCTATA 59.926 44.000 0.00 0.00 0.00 1.31
3432 3468 4.140994 TCCCTCCGTTCCTGAATACTCTAT 60.141 45.833 0.00 0.00 0.00 1.98
3433 3469 3.203710 TCCCTCCGTTCCTGAATACTCTA 59.796 47.826 0.00 0.00 0.00 2.43
3434 3470 2.024273 TCCCTCCGTTCCTGAATACTCT 60.024 50.000 0.00 0.00 0.00 3.24
3435 3471 2.362717 CTCCCTCCGTTCCTGAATACTC 59.637 54.545 0.00 0.00 0.00 2.59
3436 3472 2.292323 ACTCCCTCCGTTCCTGAATACT 60.292 50.000 0.00 0.00 0.00 2.12
3437 3473 2.108970 ACTCCCTCCGTTCCTGAATAC 58.891 52.381 0.00 0.00 0.00 1.89
3438 3474 2.544844 ACTCCCTCCGTTCCTGAATA 57.455 50.000 0.00 0.00 0.00 1.75
3439 3475 2.544844 TACTCCCTCCGTTCCTGAAT 57.455 50.000 0.00 0.00 0.00 2.57
3440 3476 2.544844 ATACTCCCTCCGTTCCTGAA 57.455 50.000 0.00 0.00 0.00 3.02
3441 3477 3.895656 CAATATACTCCCTCCGTTCCTGA 59.104 47.826 0.00 0.00 0.00 3.86
3442 3478 3.641906 ACAATATACTCCCTCCGTTCCTG 59.358 47.826 0.00 0.00 0.00 3.86
3443 3479 3.924922 ACAATATACTCCCTCCGTTCCT 58.075 45.455 0.00 0.00 0.00 3.36
3444 3480 4.684484 AACAATATACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
3445 3481 6.645790 TCTAACAATATACTCCCTCCGTTC 57.354 41.667 0.00 0.00 0.00 3.95
3446 3482 8.716674 TTATCTAACAATATACTCCCTCCGTT 57.283 34.615 0.00 0.00 0.00 4.44
3447 3483 8.716674 TTTATCTAACAATATACTCCCTCCGT 57.283 34.615 0.00 0.00 0.00 4.69
3769 3824 7.616528 AAGGGGGTTTTCATTATGGATAATG 57.383 36.000 11.63 11.63 46.84 1.90
3770 3825 8.637108 AAAAGGGGGTTTTCATTATGGATAAT 57.363 30.769 0.00 0.00 32.54 1.28
4096 4157 4.070009 GACCGTTCAATAAACCAACTCCT 58.930 43.478 0.00 0.00 34.11 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.