Multiple sequence alignment - TraesCS5B01G144900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G144900 chr5B 100.000 3595 0 0 1 3595 271959680 271956086 0.000000e+00 6639.0
1 TraesCS5B01G144900 chr5D 94.870 1579 65 8 158 1728 233016885 233018455 0.000000e+00 2453.0
2 TraesCS5B01G144900 chr5D 92.935 821 45 6 1817 2625 233018464 233019283 0.000000e+00 1182.0
3 TraesCS5B01G144900 chr5D 92.453 583 33 8 3019 3592 233019577 233020157 0.000000e+00 822.0
4 TraesCS5B01G144900 chr5D 88.088 319 8 3 2649 2955 233019280 233019580 5.710000e-93 351.0
5 TraesCS5B01G144900 chr5A 94.870 1579 66 5 159 1728 321933504 321931932 0.000000e+00 2453.0
6 TraesCS5B01G144900 chr5A 94.872 819 30 5 1818 2625 321931925 321931108 0.000000e+00 1269.0
7 TraesCS5B01G144900 chr5A 88.660 582 42 11 3019 3587 321930811 321930241 0.000000e+00 688.0
8 TraesCS5B01G144900 chr5A 80.428 327 21 23 2649 2955 321931111 321930808 3.640000e-50 209.0
9 TraesCS5B01G144900 chr5A 85.227 88 9 2 2952 3035 379130992 379130905 1.780000e-13 87.9
10 TraesCS5B01G144900 chr3B 86.928 306 23 9 3059 3349 761575415 761575718 9.620000e-86 327.0
11 TraesCS5B01G144900 chr3B 86.275 306 25 9 3059 3349 554032248 554032551 2.080000e-82 316.0
12 TraesCS5B01G144900 chr3B 100.000 28 0 0 1787 1814 401548198 401548171 6.000000e-03 52.8
13 TraesCS5B01G144900 chr1B 86.139 303 25 9 3062 3349 646680400 646680100 9.690000e-81 311.0
14 TraesCS5B01G144900 chr1B 84.967 306 29 9 3059 3349 664597018 664597321 9.760000e-76 294.0
15 TraesCS5B01G144900 chr2B 85.809 303 25 10 3062 3349 797244738 797244439 4.510000e-79 305.0
16 TraesCS5B01G144900 chr2B 88.158 76 4 2 2952 3022 226700307 226700382 6.400000e-13 86.1
17 TraesCS5B01G144900 chr7B 84.967 306 29 9 3059 3349 204157498 204157801 9.760000e-76 294.0
18 TraesCS5B01G144900 chr7B 85.542 83 7 4 2952 3033 18081208 18081130 8.270000e-12 82.4
19 TraesCS5B01G144900 chr6A 85.374 294 25 10 3059 3337 606596135 606596425 4.540000e-74 289.0
20 TraesCS5B01G144900 chr6A 85.882 85 7 4 2942 3023 501479282 501479364 6.400000e-13 86.1
21 TraesCS5B01G144900 chr7D 91.429 70 5 1 2952 3020 179191288 179191219 1.060000e-15 95.3
22 TraesCS5B01G144900 chr7A 90.000 70 6 1 2952 3020 68881102 68881171 4.940000e-14 89.8
23 TraesCS5B01G144900 chr1D 89.189 74 5 1 2950 3020 370323655 370323728 4.940000e-14 89.8
24 TraesCS5B01G144900 chr1A 88.732 71 7 1 2952 3021 313907548 313907478 6.400000e-13 86.1
25 TraesCS5B01G144900 chrUn 87.838 74 5 2 2952 3022 137782305 137782233 2.300000e-12 84.2
26 TraesCS5B01G144900 chr6D 100.000 28 0 0 1787 1814 51840641 51840614 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G144900 chr5B 271956086 271959680 3594 True 6639.00 6639 100.0000 1 3595 1 chr5B.!!$R1 3594
1 TraesCS5B01G144900 chr5D 233016885 233020157 3272 False 1202.00 2453 92.0865 158 3592 4 chr5D.!!$F1 3434
2 TraesCS5B01G144900 chr5A 321930241 321933504 3263 True 1154.75 2453 89.7075 159 3587 4 chr5A.!!$R2 3428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.101399 CTACCACAGCCTCTGCGTAG 59.899 60.0 0.00 0.0 44.33 3.51 F
71 72 0.105039 CCGCGAATTCTAGGGAGCTT 59.895 55.0 8.23 0.0 0.00 3.74 F
621 623 0.178961 AGAAAAGGAGGTTGGGGTGC 60.179 55.0 0.00 0.0 0.00 5.01 F
901 908 0.671472 CACAAGGTCTGCGCTCATCA 60.671 55.0 9.73 0.0 0.00 3.07 F
917 924 1.033574 ATCACGAGGACGAGGATTCC 58.966 55.0 0.00 0.0 42.66 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1744 1.089112 GACGTATTTTGGAACGGGGG 58.911 55.000 0.00 0.00 43.25 5.40 R
1732 1745 1.089112 GGACGTATTTTGGAACGGGG 58.911 55.000 0.00 0.00 43.25 5.73 R
2525 2550 0.238289 GTAGGAACCGTTCGACGACA 59.762 55.000 0.00 0.00 46.05 4.35 R
2549 2574 1.004745 TCATCTGGAGTTCCAAAGGCC 59.995 52.381 0.00 0.00 46.97 5.19 R
2595 2620 1.762419 GCATTTACCAGCATGCATCG 58.238 50.000 21.98 8.82 44.49 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.365410 ATTTCACAAGCCAAGGCCC 58.635 52.632 7.62 0.00 43.17 5.80
19 20 0.471591 ATTTCACAAGCCAAGGCCCA 60.472 50.000 7.62 0.00 43.17 5.36
20 21 1.398958 TTTCACAAGCCAAGGCCCAC 61.399 55.000 7.62 0.00 43.17 4.61
21 22 3.673484 CACAAGCCAAGGCCCACG 61.673 66.667 7.62 0.00 43.17 4.94
42 43 2.510238 GCTACCACAGCCTCTGCG 60.510 66.667 0.00 0.00 45.23 5.18
43 44 2.973899 CTACCACAGCCTCTGCGT 59.026 61.111 0.00 0.00 44.33 5.24
44 45 1.945354 GCTACCACAGCCTCTGCGTA 61.945 60.000 0.00 0.00 45.23 4.42
45 46 0.101399 CTACCACAGCCTCTGCGTAG 59.899 60.000 0.00 0.00 44.33 3.51
58 59 4.492160 CGTAGCAGAGGCCGCGAA 62.492 66.667 8.23 0.00 42.56 4.70
59 60 2.107141 GTAGCAGAGGCCGCGAAT 59.893 61.111 8.23 0.00 42.56 3.34
60 61 1.521681 GTAGCAGAGGCCGCGAATT 60.522 57.895 8.23 0.00 42.56 2.17
61 62 1.227263 TAGCAGAGGCCGCGAATTC 60.227 57.895 8.23 1.01 42.56 2.17
62 63 1.676678 TAGCAGAGGCCGCGAATTCT 61.677 55.000 8.23 3.78 42.56 2.40
63 64 1.227263 GCAGAGGCCGCGAATTCTA 60.227 57.895 8.23 0.00 0.00 2.10
64 65 1.218230 GCAGAGGCCGCGAATTCTAG 61.218 60.000 8.23 3.67 0.00 2.43
65 66 0.598680 CAGAGGCCGCGAATTCTAGG 60.599 60.000 8.23 7.71 0.00 3.02
66 67 1.301009 GAGGCCGCGAATTCTAGGG 60.301 63.158 8.23 9.26 0.00 3.53
67 68 1.745320 GAGGCCGCGAATTCTAGGGA 61.745 60.000 8.23 0.00 0.00 4.20
68 69 1.301009 GGCCGCGAATTCTAGGGAG 60.301 63.158 8.23 0.00 0.00 4.30
69 70 1.956678 GCCGCGAATTCTAGGGAGC 60.957 63.158 8.23 4.83 0.00 4.70
70 71 1.742768 CCGCGAATTCTAGGGAGCT 59.257 57.895 8.23 0.00 0.00 4.09
71 72 0.105039 CCGCGAATTCTAGGGAGCTT 59.895 55.000 8.23 0.00 0.00 3.74
72 73 1.340248 CCGCGAATTCTAGGGAGCTTA 59.660 52.381 8.23 0.00 0.00 3.09
73 74 2.608261 CCGCGAATTCTAGGGAGCTTAG 60.608 54.545 8.23 0.00 0.00 2.18
74 75 2.293677 CGCGAATTCTAGGGAGCTTAGA 59.706 50.000 0.00 0.00 0.00 2.10
75 76 3.610585 CGCGAATTCTAGGGAGCTTAGAG 60.611 52.174 0.00 0.00 0.00 2.43
76 77 3.319689 GCGAATTCTAGGGAGCTTAGAGT 59.680 47.826 3.52 0.00 0.00 3.24
77 78 4.202172 GCGAATTCTAGGGAGCTTAGAGTT 60.202 45.833 3.52 2.33 32.03 3.01
78 79 5.682730 GCGAATTCTAGGGAGCTTAGAGTTT 60.683 44.000 3.52 0.00 30.26 2.66
79 80 5.751028 CGAATTCTAGGGAGCTTAGAGTTTG 59.249 44.000 3.52 3.63 30.26 2.93
80 81 6.628398 CGAATTCTAGGGAGCTTAGAGTTTGT 60.628 42.308 3.52 0.00 30.26 2.83
81 82 7.416438 CGAATTCTAGGGAGCTTAGAGTTTGTA 60.416 40.741 3.52 0.00 30.26 2.41
82 83 6.777213 TTCTAGGGAGCTTAGAGTTTGTAG 57.223 41.667 0.00 0.00 0.00 2.74
83 84 5.202004 TCTAGGGAGCTTAGAGTTTGTAGG 58.798 45.833 0.00 0.00 0.00 3.18
84 85 3.108376 AGGGAGCTTAGAGTTTGTAGGG 58.892 50.000 0.00 0.00 0.00 3.53
85 86 3.105283 GGGAGCTTAGAGTTTGTAGGGA 58.895 50.000 0.00 0.00 0.00 4.20
86 87 3.712218 GGGAGCTTAGAGTTTGTAGGGAT 59.288 47.826 0.00 0.00 0.00 3.85
87 88 4.900054 GGGAGCTTAGAGTTTGTAGGGATA 59.100 45.833 0.00 0.00 0.00 2.59
88 89 5.544562 GGGAGCTTAGAGTTTGTAGGGATAT 59.455 44.000 0.00 0.00 0.00 1.63
89 90 6.459923 GGAGCTTAGAGTTTGTAGGGATATG 58.540 44.000 0.00 0.00 0.00 1.78
90 91 5.859495 AGCTTAGAGTTTGTAGGGATATGC 58.141 41.667 0.00 0.00 0.00 3.14
91 92 5.604650 AGCTTAGAGTTTGTAGGGATATGCT 59.395 40.000 0.00 0.00 0.00 3.79
92 93 6.100424 AGCTTAGAGTTTGTAGGGATATGCTT 59.900 38.462 0.00 0.00 0.00 3.91
93 94 6.768381 GCTTAGAGTTTGTAGGGATATGCTTT 59.232 38.462 0.00 0.00 0.00 3.51
94 95 7.931948 GCTTAGAGTTTGTAGGGATATGCTTTA 59.068 37.037 0.00 0.00 0.00 1.85
95 96 9.832445 CTTAGAGTTTGTAGGGATATGCTTTAA 57.168 33.333 0.00 0.00 0.00 1.52
96 97 9.609346 TTAGAGTTTGTAGGGATATGCTTTAAC 57.391 33.333 0.00 0.00 0.00 2.01
97 98 6.761714 AGAGTTTGTAGGGATATGCTTTAACG 59.238 38.462 0.00 0.00 0.00 3.18
98 99 6.646267 AGTTTGTAGGGATATGCTTTAACGA 58.354 36.000 0.00 0.00 0.00 3.85
99 100 6.537660 AGTTTGTAGGGATATGCTTTAACGAC 59.462 38.462 0.00 0.00 0.00 4.34
100 101 4.613944 TGTAGGGATATGCTTTAACGACG 58.386 43.478 0.00 0.00 0.00 5.12
101 102 2.480845 AGGGATATGCTTTAACGACGC 58.519 47.619 0.00 0.00 0.00 5.19
102 103 1.191647 GGGATATGCTTTAACGACGCG 59.808 52.381 3.53 3.53 0.00 6.01
103 104 1.856597 GGATATGCTTTAACGACGCGT 59.143 47.619 13.85 13.85 43.97 6.01
104 105 2.347292 GGATATGCTTTAACGACGCGTG 60.347 50.000 20.70 12.18 39.99 5.34
105 106 0.367548 TATGCTTTAACGACGCGTGC 59.632 50.000 20.70 13.18 39.99 5.34
106 107 1.561717 ATGCTTTAACGACGCGTGCA 61.562 50.000 20.70 19.31 39.99 4.57
107 108 1.083273 GCTTTAACGACGCGTGCAA 60.083 52.632 20.70 1.27 39.99 4.08
108 109 1.318325 GCTTTAACGACGCGTGCAAC 61.318 55.000 20.70 0.00 39.99 4.17
120 121 2.550487 GTGCAACGACCTAATGCCA 58.450 52.632 0.00 0.00 39.31 4.92
121 122 0.878416 GTGCAACGACCTAATGCCAA 59.122 50.000 0.00 0.00 39.31 4.52
122 123 1.135689 GTGCAACGACCTAATGCCAAG 60.136 52.381 0.00 0.00 39.31 3.61
123 124 1.165270 GCAACGACCTAATGCCAAGT 58.835 50.000 0.00 0.00 34.03 3.16
124 125 1.539827 GCAACGACCTAATGCCAAGTT 59.460 47.619 0.00 0.00 34.03 2.66
125 126 2.030274 GCAACGACCTAATGCCAAGTTT 60.030 45.455 0.00 0.00 34.03 2.66
126 127 3.552068 GCAACGACCTAATGCCAAGTTTT 60.552 43.478 0.00 0.00 34.03 2.43
127 128 4.616953 CAACGACCTAATGCCAAGTTTTT 58.383 39.130 0.00 0.00 0.00 1.94
155 156 3.419264 TTTGTGTGTGTGTGAATGAGC 57.581 42.857 0.00 0.00 0.00 4.26
156 157 2.330440 TGTGTGTGTGTGAATGAGCT 57.670 45.000 0.00 0.00 0.00 4.09
195 196 5.333263 CGGCACAAGATCCAAATTTTGAAAC 60.333 40.000 10.72 1.88 32.66 2.78
209 210 0.535553 TGAAACAGGGGCAACGTACC 60.536 55.000 0.00 0.00 37.60 3.34
234 235 0.457851 ACTGACACATCGCTAGCTCC 59.542 55.000 13.93 0.00 0.00 4.70
425 426 0.322456 CGCAAACATTCTCCCCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
426 427 1.177401 GCAAACATTCTCCCCTCCAC 58.823 55.000 0.00 0.00 0.00 4.02
427 428 1.839424 CAAACATTCTCCCCTCCACC 58.161 55.000 0.00 0.00 0.00 4.61
457 458 2.029073 CACAGCCGTCGTCCACTT 59.971 61.111 0.00 0.00 0.00 3.16
529 530 0.323957 AGTTCCCTGCCGGTAACTTC 59.676 55.000 1.90 0.00 31.69 3.01
603 604 2.293122 TGCTTCAAATTGGTGTTCCGAG 59.707 45.455 0.00 0.00 36.30 4.63
616 618 2.152016 GTTCCGAGAAAAGGAGGTTGG 58.848 52.381 0.00 0.00 39.22 3.77
621 623 0.178961 AGAAAAGGAGGTTGGGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
861 868 1.470494 CTGACAGCAGCTTCTACGAGA 59.530 52.381 0.00 0.00 34.95 4.04
900 907 1.364626 CCACAAGGTCTGCGCTCATC 61.365 60.000 9.73 0.00 0.00 2.92
901 908 0.671472 CACAAGGTCTGCGCTCATCA 60.671 55.000 9.73 0.00 0.00 3.07
917 924 1.033574 ATCACGAGGACGAGGATTCC 58.966 55.000 0.00 0.00 42.66 3.01
922 929 3.524606 GGACGAGGATTCCGGCGA 61.525 66.667 22.12 0.00 35.53 5.54
984 991 2.481854 CTGCCTATAGTGCTGCTTCAG 58.518 52.381 12.54 0.00 34.12 3.02
1102 1109 4.414956 TGACCTCCCGGGCCAGAT 62.415 66.667 18.49 0.00 37.62 2.90
1182 1189 2.679837 CACACTGGCATTCATAGACCAC 59.320 50.000 0.00 0.00 0.00 4.16
1226 1233 1.419762 TGTTGGGTACAGATGCACACT 59.580 47.619 0.00 0.00 31.68 3.55
1240 1247 1.269413 GCACACTCTGCACTGCATTTT 60.269 47.619 3.64 0.00 46.29 1.82
1246 1253 4.023792 CACTCTGCACTGCATTTTTCTGTA 60.024 41.667 3.64 0.00 38.13 2.74
1249 1256 4.082274 TGCACTGCATTTTTCTGTATCG 57.918 40.909 0.00 0.00 31.71 2.92
1256 1263 4.107622 GCATTTTTCTGTATCGCTGCATT 58.892 39.130 0.00 0.00 0.00 3.56
1266 1273 2.617250 TCGCTGCATTGCTAGTTTTG 57.383 45.000 10.49 0.00 0.00 2.44
1270 1277 3.121261 CGCTGCATTGCTAGTTTTGTTTG 60.121 43.478 10.49 0.00 0.00 2.93
1273 1280 5.863397 GCTGCATTGCTAGTTTTGTTTGATA 59.137 36.000 10.49 0.00 0.00 2.15
1275 1282 7.411157 GCTGCATTGCTAGTTTTGTTTGATAAG 60.411 37.037 10.49 0.00 0.00 1.73
1439 1446 3.057456 GGTGAGAAAGAGAACAGCGTAGA 60.057 47.826 0.00 0.00 0.00 2.59
1573 1580 2.622942 GTTCTCAAGTTGGTCATGGCAA 59.377 45.455 0.00 0.00 0.00 4.52
1575 1582 4.299586 TCTCAAGTTGGTCATGGCAATA 57.700 40.909 0.00 0.00 0.00 1.90
1617 1624 3.075148 GTCTTCTAAGGTTCTTGTGGCC 58.925 50.000 0.00 0.00 0.00 5.36
1651 1658 2.758327 TGGCGGCGAGTCTGGTAT 60.758 61.111 12.98 0.00 0.00 2.73
1728 1741 9.549078 AAAGAACCCGCAAAATTTAGAATTTAA 57.451 25.926 0.00 0.00 0.00 1.52
1730 1743 9.366216 AGAACCCGCAAAATTTAGAATTTAATC 57.634 29.630 0.00 0.00 0.00 1.75
1731 1744 8.487313 AACCCGCAAAATTTAGAATTTAATCC 57.513 30.769 0.00 0.00 0.00 3.01
1732 1745 7.045416 ACCCGCAAAATTTAGAATTTAATCCC 58.955 34.615 0.00 0.00 0.00 3.85
1734 1747 6.481976 CCGCAAAATTTAGAATTTAATCCCCC 59.518 38.462 0.00 0.00 0.00 5.40
1749 1762 3.252979 CCCCCGTTCCAAAATACGT 57.747 52.632 0.00 0.00 36.09 3.57
1750 1763 1.089112 CCCCCGTTCCAAAATACGTC 58.911 55.000 0.00 0.00 36.09 4.34
1751 1764 1.089112 CCCCGTTCCAAAATACGTCC 58.911 55.000 0.00 0.00 36.09 4.79
1752 1765 1.339342 CCCCGTTCCAAAATACGTCCT 60.339 52.381 0.00 0.00 36.09 3.85
1753 1766 1.735571 CCCGTTCCAAAATACGTCCTG 59.264 52.381 0.00 0.00 36.09 3.86
1754 1767 1.735571 CCGTTCCAAAATACGTCCTGG 59.264 52.381 0.00 0.00 36.09 4.45
1755 1768 2.419667 CGTTCCAAAATACGTCCTGGT 58.580 47.619 0.00 0.00 33.33 4.00
1756 1769 2.809696 CGTTCCAAAATACGTCCTGGTT 59.190 45.455 0.00 0.00 33.33 3.67
1757 1770 3.251487 CGTTCCAAAATACGTCCTGGTTT 59.749 43.478 0.00 0.00 33.33 3.27
1758 1771 4.261280 CGTTCCAAAATACGTCCTGGTTTT 60.261 41.667 0.00 0.00 33.33 2.43
1759 1772 5.049543 CGTTCCAAAATACGTCCTGGTTTTA 60.050 40.000 0.00 0.00 33.33 1.52
1760 1773 6.376177 GTTCCAAAATACGTCCTGGTTTTAG 58.624 40.000 0.00 0.00 0.00 1.85
1761 1774 5.623169 TCCAAAATACGTCCTGGTTTTAGT 58.377 37.500 0.00 0.00 0.00 2.24
1762 1775 6.063404 TCCAAAATACGTCCTGGTTTTAGTT 58.937 36.000 0.00 0.00 0.00 2.24
1763 1776 6.205270 TCCAAAATACGTCCTGGTTTTAGTTC 59.795 38.462 0.00 0.00 0.00 3.01
1764 1777 6.016943 CCAAAATACGTCCTGGTTTTAGTTCA 60.017 38.462 0.00 0.00 0.00 3.18
1765 1778 7.419204 CAAAATACGTCCTGGTTTTAGTTCAA 58.581 34.615 0.00 0.00 0.00 2.69
1766 1779 7.571080 AAATACGTCCTGGTTTTAGTTCAAA 57.429 32.000 0.00 0.00 0.00 2.69
1767 1780 7.754851 AATACGTCCTGGTTTTAGTTCAAAT 57.245 32.000 0.00 0.00 0.00 2.32
1768 1781 7.754851 ATACGTCCTGGTTTTAGTTCAAATT 57.245 32.000 0.00 0.00 0.00 1.82
1769 1782 6.459670 ACGTCCTGGTTTTAGTTCAAATTT 57.540 33.333 0.00 0.00 0.00 1.82
1770 1783 6.869695 ACGTCCTGGTTTTAGTTCAAATTTT 58.130 32.000 0.00 0.00 0.00 1.82
1771 1784 6.754675 ACGTCCTGGTTTTAGTTCAAATTTTG 59.245 34.615 2.59 2.59 0.00 2.44
1772 1785 6.975772 CGTCCTGGTTTTAGTTCAAATTTTGA 59.024 34.615 7.74 7.74 38.04 2.69
1773 1786 7.489757 CGTCCTGGTTTTAGTTCAAATTTTGAA 59.510 33.333 18.29 18.29 46.68 2.69
1785 1798 6.170675 TCAAATTTTGAACAAAAACCACGG 57.829 33.333 15.00 4.74 42.71 4.94
1786 1799 4.608073 AATTTTGAACAAAAACCACGGC 57.392 36.364 15.00 0.00 42.71 5.68
1787 1800 2.743636 TTTGAACAAAAACCACGGCA 57.256 40.000 0.00 0.00 0.00 5.69
1788 1801 2.743636 TTGAACAAAAACCACGGCAA 57.256 40.000 0.00 0.00 0.00 4.52
1789 1802 2.285827 TGAACAAAAACCACGGCAAG 57.714 45.000 0.00 0.00 0.00 4.01
1790 1803 1.819288 TGAACAAAAACCACGGCAAGA 59.181 42.857 0.00 0.00 0.00 3.02
1791 1804 2.231478 TGAACAAAAACCACGGCAAGAA 59.769 40.909 0.00 0.00 0.00 2.52
1792 1805 3.118956 TGAACAAAAACCACGGCAAGAAT 60.119 39.130 0.00 0.00 0.00 2.40
1793 1806 3.535280 ACAAAAACCACGGCAAGAATT 57.465 38.095 0.00 0.00 0.00 2.17
1794 1807 3.867857 ACAAAAACCACGGCAAGAATTT 58.132 36.364 0.00 0.00 0.00 1.82
1795 1808 4.257731 ACAAAAACCACGGCAAGAATTTT 58.742 34.783 0.00 0.00 0.00 1.82
1796 1809 4.094146 ACAAAAACCACGGCAAGAATTTTG 59.906 37.500 11.05 11.05 40.35 2.44
1797 1810 2.524569 AACCACGGCAAGAATTTTGG 57.475 45.000 0.00 0.00 0.00 3.28
1798 1811 1.698506 ACCACGGCAAGAATTTTGGA 58.301 45.000 0.00 0.00 0.00 3.53
1799 1812 2.035632 ACCACGGCAAGAATTTTGGAA 58.964 42.857 0.00 0.00 0.00 3.53
1800 1813 2.223947 ACCACGGCAAGAATTTTGGAAC 60.224 45.455 0.00 0.00 0.00 3.62
1801 1814 2.223923 CCACGGCAAGAATTTTGGAACA 60.224 45.455 0.00 0.00 0.00 3.18
1802 1815 3.052036 CACGGCAAGAATTTTGGAACAG 58.948 45.455 0.00 0.00 42.39 3.16
1803 1816 2.955660 ACGGCAAGAATTTTGGAACAGA 59.044 40.909 0.00 0.00 42.39 3.41
1804 1817 3.004734 ACGGCAAGAATTTTGGAACAGAG 59.995 43.478 0.00 0.00 42.39 3.35
1805 1818 3.612479 CGGCAAGAATTTTGGAACAGAGG 60.612 47.826 0.00 0.00 42.39 3.69
1806 1819 3.306294 GGCAAGAATTTTGGAACAGAGGG 60.306 47.826 0.00 0.00 42.39 4.30
1807 1820 3.573967 GCAAGAATTTTGGAACAGAGGGA 59.426 43.478 3.60 0.00 42.39 4.20
1808 1821 4.321527 GCAAGAATTTTGGAACAGAGGGAG 60.322 45.833 3.60 0.00 42.39 4.30
1809 1822 4.731313 AGAATTTTGGAACAGAGGGAGT 57.269 40.909 0.00 0.00 42.39 3.85
1810 1823 5.843019 AGAATTTTGGAACAGAGGGAGTA 57.157 39.130 0.00 0.00 42.39 2.59
1811 1824 5.561679 AGAATTTTGGAACAGAGGGAGTAC 58.438 41.667 0.00 0.00 42.39 2.73
1812 1825 5.310857 AGAATTTTGGAACAGAGGGAGTACT 59.689 40.000 0.00 0.00 42.39 2.73
1813 1826 5.584551 ATTTTGGAACAGAGGGAGTACTT 57.415 39.130 0.00 0.00 42.39 2.24
1814 1827 4.618920 TTTGGAACAGAGGGAGTACTTC 57.381 45.455 0.00 0.00 42.39 3.01
1815 1828 3.544698 TGGAACAGAGGGAGTACTTCT 57.455 47.619 0.01 0.06 0.00 2.85
1862 1877 2.929398 GTTCCTGCAACTTTTGTGGTTG 59.071 45.455 0.00 0.00 44.60 3.77
1863 1878 1.480137 TCCTGCAACTTTTGTGGTTGG 59.520 47.619 8.34 0.00 42.77 3.77
2040 2062 7.402054 ACCTACTCATATTGTTGTTCATGGAA 58.598 34.615 0.00 0.00 0.00 3.53
2107 2129 8.354711 TCTTGGAGTACACTATATCCATGATC 57.645 38.462 9.70 0.00 41.33 2.92
2117 2139 9.539194 ACACTATATCCATGATCACAGATTCTA 57.461 33.333 13.07 6.61 0.00 2.10
2122 2144 4.964897 TCCATGATCACAGATTCTACACCT 59.035 41.667 0.00 0.00 0.00 4.00
2140 2162 3.258372 CACCTAAGTCAAGAGTGCCAGTA 59.742 47.826 0.00 0.00 0.00 2.74
2194 2216 7.655328 CCAGGTTCAACTATATGCTTCTTCTAG 59.345 40.741 0.00 0.00 0.00 2.43
2198 2220 7.661536 TCAACTATATGCTTCTTCTAGTGGT 57.338 36.000 0.00 0.00 0.00 4.16
2202 2224 7.665690 ACTATATGCTTCTTCTAGTGGTCATG 58.334 38.462 0.00 0.00 0.00 3.07
2220 2242 7.653713 GTGGTCATGTTATCCTTATCTGTGTAG 59.346 40.741 0.00 0.00 0.00 2.74
2221 2243 7.344612 TGGTCATGTTATCCTTATCTGTGTAGT 59.655 37.037 0.00 0.00 0.00 2.73
2222 2244 8.204836 GGTCATGTTATCCTTATCTGTGTAGTT 58.795 37.037 0.00 0.00 0.00 2.24
2232 2257 7.067129 TCCTTATCTGTGTAGTTAGTGCTACTG 59.933 40.741 5.10 0.00 41.27 2.74
2306 2331 9.626045 TGAATGCTCTAATACACGATACATAAG 57.374 33.333 0.00 0.00 0.00 1.73
2423 2448 1.600636 CCGCCTTGTTCCAGCTTCA 60.601 57.895 0.00 0.00 0.00 3.02
2441 2466 1.992667 TCAAATGCTGAACGTCTAGCG 59.007 47.619 16.21 5.24 42.74 4.26
2471 2496 1.577328 CTGGCGCGACATTTGAGGTT 61.577 55.000 18.76 0.00 0.00 3.50
2525 2550 4.278975 ACGAGCTGAAGAATTCCTTTCT 57.721 40.909 0.65 0.00 46.93 2.52
2549 2574 1.135460 GTCGAACGGTTCCTACAGAGG 60.135 57.143 14.83 0.00 45.35 3.69
2552 2577 1.551019 AACGGTTCCTACAGAGGGCC 61.551 60.000 0.00 0.00 43.94 5.80
2595 2620 2.160417 GTGTTCCAAGCAGCTGTATGAC 59.840 50.000 16.64 9.99 0.00 3.06
2598 2623 1.482182 TCCAAGCAGCTGTATGACGAT 59.518 47.619 16.64 0.00 0.00 3.73
2599 2624 1.596260 CCAAGCAGCTGTATGACGATG 59.404 52.381 16.64 3.29 0.00 3.84
2633 2658 3.959573 GCATATGCAGAAGACCTGTTC 57.040 47.619 22.84 0.00 44.71 3.18
2634 2659 3.539604 GCATATGCAGAAGACCTGTTCT 58.460 45.455 22.84 0.00 44.71 3.01
2635 2660 3.559242 GCATATGCAGAAGACCTGTTCTC 59.441 47.826 22.84 0.00 44.71 2.87
2636 2661 4.763073 CATATGCAGAAGACCTGTTCTCA 58.237 43.478 0.00 0.00 44.71 3.27
2637 2662 3.777106 ATGCAGAAGACCTGTTCTCAA 57.223 42.857 0.00 0.00 44.71 3.02
2638 2663 3.558931 TGCAGAAGACCTGTTCTCAAA 57.441 42.857 0.00 0.00 44.71 2.69
2639 2664 3.884895 TGCAGAAGACCTGTTCTCAAAA 58.115 40.909 0.00 0.00 44.71 2.44
2640 2665 4.269183 TGCAGAAGACCTGTTCTCAAAAA 58.731 39.130 0.00 0.00 44.71 1.94
2712 2745 5.957842 TTGCAGTTTAACGATTGGAGATT 57.042 34.783 0.00 0.00 0.00 2.40
2713 2746 5.295431 TGCAGTTTAACGATTGGAGATTG 57.705 39.130 0.00 0.00 0.00 2.67
2714 2747 4.098416 GCAGTTTAACGATTGGAGATTGC 58.902 43.478 0.00 0.00 0.00 3.56
2715 2748 4.379394 GCAGTTTAACGATTGGAGATTGCA 60.379 41.667 0.00 0.00 0.00 4.08
2716 2749 5.677091 GCAGTTTAACGATTGGAGATTGCAT 60.677 40.000 0.00 0.00 0.00 3.96
2717 2750 6.324819 CAGTTTAACGATTGGAGATTGCATT 58.675 36.000 0.00 0.00 0.00 3.56
2718 2751 6.808212 CAGTTTAACGATTGGAGATTGCATTT 59.192 34.615 0.00 0.00 0.00 2.32
2719 2752 7.008628 CAGTTTAACGATTGGAGATTGCATTTC 59.991 37.037 0.00 0.00 0.00 2.17
2720 2753 6.757897 TTAACGATTGGAGATTGCATTTCT 57.242 33.333 0.00 0.00 0.00 2.52
2721 2754 4.627611 ACGATTGGAGATTGCATTTCTG 57.372 40.909 4.53 0.00 0.00 3.02
2722 2755 4.012374 ACGATTGGAGATTGCATTTCTGT 58.988 39.130 4.53 0.00 0.00 3.41
2723 2756 4.460382 ACGATTGGAGATTGCATTTCTGTT 59.540 37.500 4.53 0.00 0.00 3.16
2724 2757 4.796830 CGATTGGAGATTGCATTTCTGTTG 59.203 41.667 4.53 0.00 0.00 3.33
2725 2758 4.524316 TTGGAGATTGCATTTCTGTTGG 57.476 40.909 4.53 0.00 0.00 3.77
2726 2759 3.765381 TGGAGATTGCATTTCTGTTGGA 58.235 40.909 4.53 0.00 0.00 3.53
2727 2760 3.760151 TGGAGATTGCATTTCTGTTGGAG 59.240 43.478 4.53 0.00 0.00 3.86
2728 2761 4.012374 GGAGATTGCATTTCTGTTGGAGA 58.988 43.478 4.53 0.00 0.00 3.71
2729 2762 4.643784 GGAGATTGCATTTCTGTTGGAGAT 59.356 41.667 4.53 0.00 0.00 2.75
2762 2795 8.780846 TTAATAGCCATGGGTGTTTATATACG 57.219 34.615 27.74 0.00 0.00 3.06
2770 2803 6.169557 TGGGTGTTTATATACGATGAAGCT 57.830 37.500 0.00 0.00 0.00 3.74
2771 2804 6.588204 TGGGTGTTTATATACGATGAAGCTT 58.412 36.000 0.00 0.00 0.00 3.74
2919 2970 2.233186 GGTAGACGTAGAGCAAAGGGTT 59.767 50.000 0.00 0.00 0.00 4.11
2920 2971 2.457366 AGACGTAGAGCAAAGGGTTG 57.543 50.000 0.00 0.00 37.83 3.77
2955 3006 9.499479 AGAATGTCATGGATGTATCAATTACTC 57.501 33.333 0.00 0.00 0.00 2.59
2956 3007 9.499479 GAATGTCATGGATGTATCAATTACTCT 57.501 33.333 0.00 0.00 0.00 3.24
2957 3008 9.499479 AATGTCATGGATGTATCAATTACTCTC 57.501 33.333 0.00 0.00 0.00 3.20
2958 3009 8.255111 TGTCATGGATGTATCAATTACTCTCT 57.745 34.615 0.00 0.00 0.00 3.10
2959 3010 8.363390 TGTCATGGATGTATCAATTACTCTCTC 58.637 37.037 0.00 0.00 0.00 3.20
2960 3011 8.584157 GTCATGGATGTATCAATTACTCTCTCT 58.416 37.037 0.00 0.00 0.00 3.10
2961 3012 8.583296 TCATGGATGTATCAATTACTCTCTCTG 58.417 37.037 0.00 0.00 0.00 3.35
2962 3013 6.753180 TGGATGTATCAATTACTCTCTCTGC 58.247 40.000 0.00 0.00 0.00 4.26
2963 3014 6.162777 GGATGTATCAATTACTCTCTCTGCC 58.837 44.000 0.00 0.00 0.00 4.85
2964 3015 5.537300 TGTATCAATTACTCTCTCTGCCC 57.463 43.478 0.00 0.00 0.00 5.36
2965 3016 4.345257 TGTATCAATTACTCTCTCTGCCCC 59.655 45.833 0.00 0.00 0.00 5.80
2966 3017 2.832838 TCAATTACTCTCTCTGCCCCA 58.167 47.619 0.00 0.00 0.00 4.96
2967 3018 3.387962 TCAATTACTCTCTCTGCCCCAT 58.612 45.455 0.00 0.00 0.00 4.00
2968 3019 4.556697 TCAATTACTCTCTCTGCCCCATA 58.443 43.478 0.00 0.00 0.00 2.74
2969 3020 4.968719 TCAATTACTCTCTCTGCCCCATAA 59.031 41.667 0.00 0.00 0.00 1.90
2970 3021 5.608437 TCAATTACTCTCTCTGCCCCATAAT 59.392 40.000 0.00 0.00 0.00 1.28
2971 3022 6.787458 TCAATTACTCTCTCTGCCCCATAATA 59.213 38.462 0.00 0.00 0.00 0.98
2972 3023 7.459125 TCAATTACTCTCTCTGCCCCATAATAT 59.541 37.037 0.00 0.00 0.00 1.28
2973 3024 8.762645 CAATTACTCTCTCTGCCCCATAATATA 58.237 37.037 0.00 0.00 0.00 0.86
2974 3025 8.917414 ATTACTCTCTCTGCCCCATAATATAA 57.083 34.615 0.00 0.00 0.00 0.98
2975 3026 6.865834 ACTCTCTCTGCCCCATAATATAAG 57.134 41.667 0.00 0.00 0.00 1.73
2976 3027 6.565974 ACTCTCTCTGCCCCATAATATAAGA 58.434 40.000 0.00 0.00 0.00 2.10
2977 3028 7.019388 ACTCTCTCTGCCCCATAATATAAGAA 58.981 38.462 0.00 0.00 0.00 2.52
2978 3029 7.038658 ACTCTCTCTGCCCCATAATATAAGAAC 60.039 40.741 0.00 0.00 0.00 3.01
2979 3030 6.037786 TCTCTGCCCCATAATATAAGAACG 57.962 41.667 0.00 0.00 0.00 3.95
2980 3031 5.542635 TCTCTGCCCCATAATATAAGAACGT 59.457 40.000 0.00 0.00 0.00 3.99
2981 3032 5.547465 TCTGCCCCATAATATAAGAACGTG 58.453 41.667 0.00 0.00 0.00 4.49
2982 3033 5.071250 TCTGCCCCATAATATAAGAACGTGT 59.929 40.000 0.00 0.00 0.00 4.49
2983 3034 5.060506 TGCCCCATAATATAAGAACGTGTG 58.939 41.667 0.00 0.00 0.00 3.82
2984 3035 5.061179 GCCCCATAATATAAGAACGTGTGT 58.939 41.667 0.00 0.00 0.00 3.72
2985 3036 5.529800 GCCCCATAATATAAGAACGTGTGTT 59.470 40.000 0.00 0.00 42.23 3.32
2986 3037 6.707161 GCCCCATAATATAAGAACGTGTGTTA 59.293 38.462 0.00 0.00 38.78 2.41
2987 3038 7.227116 GCCCCATAATATAAGAACGTGTGTTAA 59.773 37.037 0.00 0.00 38.78 2.01
2988 3039 9.111613 CCCCATAATATAAGAACGTGTGTTAAA 57.888 33.333 0.00 0.00 38.78 1.52
2993 3044 7.998081 ATATAAGAACGTGTGTTAAAAACGC 57.002 32.000 0.00 0.00 40.90 4.84
2994 3045 4.345271 AAGAACGTGTGTTAAAAACGCT 57.655 36.364 0.00 0.00 42.27 5.07
2995 3046 3.931824 AGAACGTGTGTTAAAAACGCTC 58.068 40.909 0.00 4.20 42.27 5.03
2996 3047 3.619929 AGAACGTGTGTTAAAAACGCTCT 59.380 39.130 0.00 6.13 42.27 4.09
2997 3048 4.093850 AGAACGTGTGTTAAAAACGCTCTT 59.906 37.500 0.00 0.00 39.07 2.85
2998 3049 5.291614 AGAACGTGTGTTAAAAACGCTCTTA 59.708 36.000 0.00 0.00 39.07 2.10
2999 3050 5.662211 ACGTGTGTTAAAAACGCTCTTAT 57.338 34.783 5.10 0.00 42.27 1.73
3000 3051 6.768029 ACGTGTGTTAAAAACGCTCTTATA 57.232 33.333 5.10 0.00 42.27 0.98
3001 3052 7.355332 ACGTGTGTTAAAAACGCTCTTATAT 57.645 32.000 5.10 0.00 42.27 0.86
3002 3053 7.799784 ACGTGTGTTAAAAACGCTCTTATATT 58.200 30.769 5.10 0.00 42.27 1.28
3003 3054 8.924691 ACGTGTGTTAAAAACGCTCTTATATTA 58.075 29.630 5.10 0.00 42.27 0.98
3004 3055 9.910511 CGTGTGTTAAAAACGCTCTTATATTAT 57.089 29.630 5.10 0.00 42.27 1.28
3007 3058 9.659830 GTGTTAAAAACGCTCTTATATTATGGG 57.340 33.333 0.00 0.00 38.81 4.00
3008 3059 9.616156 TGTTAAAAACGCTCTTATATTATGGGA 57.384 29.630 0.00 0.00 0.00 4.37
3009 3060 9.874215 GTTAAAAACGCTCTTATATTATGGGAC 57.126 33.333 0.00 0.00 0.00 4.46
3010 3061 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3011 3062 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3012 3063 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3013 3064 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3014 3065 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3015 3066 4.466726 GCTCTTATATTATGGGACGGAGGT 59.533 45.833 0.00 0.00 0.00 3.85
3016 3067 5.655532 GCTCTTATATTATGGGACGGAGGTA 59.344 44.000 0.00 0.00 0.00 3.08
3017 3068 6.183360 GCTCTTATATTATGGGACGGAGGTAG 60.183 46.154 0.00 0.00 0.00 3.18
3018 3069 6.797707 TCTTATATTATGGGACGGAGGTAGT 58.202 40.000 0.00 0.00 0.00 2.73
3019 3070 7.932134 TCTTATATTATGGGACGGAGGTAGTA 58.068 38.462 0.00 0.00 0.00 1.82
3020 3071 7.831193 TCTTATATTATGGGACGGAGGTAGTAC 59.169 40.741 0.00 0.00 0.00 2.73
3021 3072 3.959495 TTATGGGACGGAGGTAGTACT 57.041 47.619 0.00 0.00 0.00 2.73
3060 3111 2.749621 GAGTTGAAATCCTGCGGACATT 59.250 45.455 0.00 0.00 32.98 2.71
3083 3134 9.603921 CATTTCCCTTGATTTATTTATGCTGTT 57.396 29.630 0.00 0.00 0.00 3.16
3117 3168 7.669427 TGCAACATAACTTGATGAAGGAAAAT 58.331 30.769 0.00 0.00 32.95 1.82
3145 3197 5.179182 CCAATAAAATTTGACAGCACCAACC 59.821 40.000 0.00 0.00 0.00 3.77
3165 3217 5.217978 ACCGTCCACAAATCTACAGTTTA 57.782 39.130 0.00 0.00 0.00 2.01
3208 3269 2.618241 TGTGATTCACTCTTTGTGTGCC 59.382 45.455 17.26 0.00 46.27 5.01
3224 3285 2.230940 GCCGACATCCATGACGACG 61.231 63.158 12.09 0.00 45.97 5.12
3263 3324 8.898761 ACAAACATTTATCTCTGTAAACACACA 58.101 29.630 0.00 0.00 0.00 3.72
3265 3326 9.950680 AAACATTTATCTCTGTAAACACACAAG 57.049 29.630 0.00 0.00 0.00 3.16
3318 3382 1.407437 GGTCCGGATTCTGAACATGCT 60.407 52.381 7.81 0.00 0.00 3.79
3319 3383 2.158957 GGTCCGGATTCTGAACATGCTA 60.159 50.000 7.81 0.00 0.00 3.49
3358 3422 6.573664 TCCACACATGATAAAAAGGTGAAG 57.426 37.500 0.00 0.00 33.82 3.02
3397 3461 6.967199 CCACAAGTTTCTCTAATTTATTCGGC 59.033 38.462 0.00 0.00 0.00 5.54
3398 3462 6.967199 CACAAGTTTCTCTAATTTATTCGGCC 59.033 38.462 0.00 0.00 0.00 6.13
3463 3530 4.682589 CGGATCCAGTTAGAGGGGTAAAAC 60.683 50.000 13.41 0.00 0.00 2.43
3587 3655 4.074970 CCAACCATCCATAGGAATGCTAC 58.925 47.826 0.00 0.00 34.34 3.58
3592 3660 4.240888 CATCCATAGGAATGCTACTCGTG 58.759 47.826 0.00 0.00 34.34 4.35
3593 3661 2.035961 TCCATAGGAATGCTACTCGTGC 59.964 50.000 0.00 0.00 0.00 5.34
3594 3662 2.224042 CCATAGGAATGCTACTCGTGCA 60.224 50.000 0.00 0.00 44.95 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.471591 TGGGCCTTGGCTTGTGAAAT 60.472 50.000 11.71 0.00 0.00 2.17
1 2 1.075674 TGGGCCTTGGCTTGTGAAA 60.076 52.632 11.71 0.00 0.00 2.69
2 3 1.832167 GTGGGCCTTGGCTTGTGAA 60.832 57.895 11.71 0.00 0.00 3.18
3 4 2.203480 GTGGGCCTTGGCTTGTGA 60.203 61.111 11.71 0.00 0.00 3.58
4 5 3.673484 CGTGGGCCTTGGCTTGTG 61.673 66.667 11.71 0.00 0.00 3.33
26 27 0.101399 CTACGCAGAGGCTGTGGTAG 59.899 60.000 14.04 16.93 45.11 3.18
27 28 1.945354 GCTACGCAGAGGCTGTGGTA 61.945 60.000 14.04 12.11 45.11 3.25
28 29 2.973899 CTACGCAGAGGCTGTGGT 59.026 61.111 14.04 11.63 45.11 4.16
29 30 2.510238 GCTACGCAGAGGCTGTGG 60.510 66.667 14.04 6.21 45.11 4.17
30 31 2.262603 TGCTACGCAGAGGCTGTG 59.737 61.111 7.39 7.39 46.11 3.66
41 42 3.774959 ATTCGCGGCCTCTGCTACG 62.775 63.158 6.13 0.00 37.74 3.51
42 43 1.491505 GAATTCGCGGCCTCTGCTAC 61.492 60.000 6.13 0.00 37.74 3.58
43 44 1.227263 GAATTCGCGGCCTCTGCTA 60.227 57.895 6.13 0.00 37.74 3.49
44 45 1.676678 TAGAATTCGCGGCCTCTGCT 61.677 55.000 6.13 0.00 37.74 4.24
45 46 1.218230 CTAGAATTCGCGGCCTCTGC 61.218 60.000 6.13 0.00 0.00 4.26
46 47 0.598680 CCTAGAATTCGCGGCCTCTG 60.599 60.000 6.13 1.32 0.00 3.35
47 48 1.742768 CCTAGAATTCGCGGCCTCT 59.257 57.895 6.13 8.12 0.00 3.69
48 49 1.301009 CCCTAGAATTCGCGGCCTC 60.301 63.158 6.13 0.00 0.00 4.70
49 50 1.749334 CTCCCTAGAATTCGCGGCCT 61.749 60.000 6.13 0.74 0.00 5.19
50 51 1.301009 CTCCCTAGAATTCGCGGCC 60.301 63.158 6.13 0.00 0.00 6.13
51 52 1.956678 GCTCCCTAGAATTCGCGGC 60.957 63.158 6.13 0.00 0.00 6.53
52 53 0.105039 AAGCTCCCTAGAATTCGCGG 59.895 55.000 6.13 4.54 0.00 6.46
53 54 2.293677 TCTAAGCTCCCTAGAATTCGCG 59.706 50.000 0.00 0.00 0.00 5.87
54 55 3.319689 ACTCTAAGCTCCCTAGAATTCGC 59.680 47.826 0.00 0.00 0.00 4.70
55 56 5.523438 AACTCTAAGCTCCCTAGAATTCG 57.477 43.478 0.00 0.00 0.00 3.34
56 57 6.645306 ACAAACTCTAAGCTCCCTAGAATTC 58.355 40.000 0.00 0.00 0.00 2.17
57 58 6.628644 ACAAACTCTAAGCTCCCTAGAATT 57.371 37.500 0.00 0.00 0.00 2.17
58 59 6.325286 CCTACAAACTCTAAGCTCCCTAGAAT 59.675 42.308 0.00 0.00 0.00 2.40
59 60 5.657302 CCTACAAACTCTAAGCTCCCTAGAA 59.343 44.000 0.00 0.00 0.00 2.10
60 61 5.202004 CCTACAAACTCTAAGCTCCCTAGA 58.798 45.833 0.00 0.00 0.00 2.43
61 62 4.342665 CCCTACAAACTCTAAGCTCCCTAG 59.657 50.000 0.00 0.00 0.00 3.02
62 63 4.016851 TCCCTACAAACTCTAAGCTCCCTA 60.017 45.833 0.00 0.00 0.00 3.53
63 64 3.108376 CCCTACAAACTCTAAGCTCCCT 58.892 50.000 0.00 0.00 0.00 4.20
64 65 3.105283 TCCCTACAAACTCTAAGCTCCC 58.895 50.000 0.00 0.00 0.00 4.30
65 66 6.459923 CATATCCCTACAAACTCTAAGCTCC 58.540 44.000 0.00 0.00 0.00 4.70
66 67 5.929415 GCATATCCCTACAAACTCTAAGCTC 59.071 44.000 0.00 0.00 0.00 4.09
67 68 5.604650 AGCATATCCCTACAAACTCTAAGCT 59.395 40.000 0.00 0.00 0.00 3.74
68 69 5.859495 AGCATATCCCTACAAACTCTAAGC 58.141 41.667 0.00 0.00 0.00 3.09
69 70 9.832445 TTAAAGCATATCCCTACAAACTCTAAG 57.168 33.333 0.00 0.00 0.00 2.18
70 71 9.609346 GTTAAAGCATATCCCTACAAACTCTAA 57.391 33.333 0.00 0.00 0.00 2.10
71 72 7.924412 CGTTAAAGCATATCCCTACAAACTCTA 59.076 37.037 0.00 0.00 0.00 2.43
72 73 6.761714 CGTTAAAGCATATCCCTACAAACTCT 59.238 38.462 0.00 0.00 0.00 3.24
73 74 6.759827 TCGTTAAAGCATATCCCTACAAACTC 59.240 38.462 0.00 0.00 0.00 3.01
74 75 6.537660 GTCGTTAAAGCATATCCCTACAAACT 59.462 38.462 0.00 0.00 0.00 2.66
75 76 6.509039 CGTCGTTAAAGCATATCCCTACAAAC 60.509 42.308 0.00 0.00 0.00 2.93
76 77 5.521010 CGTCGTTAAAGCATATCCCTACAAA 59.479 40.000 0.00 0.00 0.00 2.83
77 78 5.045215 CGTCGTTAAAGCATATCCCTACAA 58.955 41.667 0.00 0.00 0.00 2.41
78 79 4.613944 CGTCGTTAAAGCATATCCCTACA 58.386 43.478 0.00 0.00 0.00 2.74
79 80 3.427863 GCGTCGTTAAAGCATATCCCTAC 59.572 47.826 0.00 0.00 32.01 3.18
80 81 3.645884 GCGTCGTTAAAGCATATCCCTA 58.354 45.455 0.00 0.00 32.01 3.53
81 82 2.480845 GCGTCGTTAAAGCATATCCCT 58.519 47.619 0.00 0.00 32.01 4.20
82 83 1.191647 CGCGTCGTTAAAGCATATCCC 59.808 52.381 0.00 0.00 32.01 3.85
83 84 1.856597 ACGCGTCGTTAAAGCATATCC 59.143 47.619 5.58 0.00 36.35 2.59
84 85 2.875633 CACGCGTCGTTAAAGCATATC 58.124 47.619 9.86 0.00 38.32 1.63
85 86 1.005347 GCACGCGTCGTTAAAGCATAT 60.005 47.619 9.86 0.00 38.32 1.78
86 87 0.367548 GCACGCGTCGTTAAAGCATA 59.632 50.000 9.86 0.00 38.32 3.14
87 88 1.131826 GCACGCGTCGTTAAAGCAT 59.868 52.632 9.86 0.00 38.32 3.79
88 89 1.763200 TTGCACGCGTCGTTAAAGCA 61.763 50.000 9.86 12.01 38.32 3.91
89 90 1.083273 TTGCACGCGTCGTTAAAGC 60.083 52.632 9.86 8.93 38.32 3.51
90 91 1.045469 CGTTGCACGCGTCGTTAAAG 61.045 55.000 9.86 0.00 38.32 1.85
91 92 1.084164 CGTTGCACGCGTCGTTAAA 60.084 52.632 9.86 0.00 38.32 1.52
92 93 1.943202 TCGTTGCACGCGTCGTTAA 60.943 52.632 9.86 0.00 42.21 2.01
93 94 2.353261 TCGTTGCACGCGTCGTTA 60.353 55.556 9.86 0.00 42.21 3.18
94 95 3.979961 GTCGTTGCACGCGTCGTT 61.980 61.111 9.86 0.00 42.21 3.85
97 98 1.349259 ATTAGGTCGTTGCACGCGTC 61.349 55.000 9.86 5.12 42.21 5.19
98 99 1.373748 ATTAGGTCGTTGCACGCGT 60.374 52.632 5.58 5.58 42.21 6.01
99 100 1.058748 CATTAGGTCGTTGCACGCG 59.941 57.895 3.53 3.53 42.21 6.01
100 101 1.226018 GCATTAGGTCGTTGCACGC 60.226 57.895 4.15 0.00 42.21 5.34
101 102 1.295357 TGGCATTAGGTCGTTGCACG 61.295 55.000 0.00 0.00 44.19 5.34
102 103 0.878416 TTGGCATTAGGTCGTTGCAC 59.122 50.000 0.00 0.00 38.12 4.57
103 104 1.164411 CTTGGCATTAGGTCGTTGCA 58.836 50.000 0.00 0.00 38.12 4.08
104 105 1.165270 ACTTGGCATTAGGTCGTTGC 58.835 50.000 0.00 0.00 35.64 4.17
105 106 3.915437 AAACTTGGCATTAGGTCGTTG 57.085 42.857 0.00 0.00 0.00 4.10
106 107 4.929819 AAAAACTTGGCATTAGGTCGTT 57.070 36.364 0.00 0.00 0.00 3.85
133 134 4.082300 AGCTCATTCACACACACACAAAAA 60.082 37.500 0.00 0.00 0.00 1.94
134 135 3.443329 AGCTCATTCACACACACACAAAA 59.557 39.130 0.00 0.00 0.00 2.44
135 136 3.016031 AGCTCATTCACACACACACAAA 58.984 40.909 0.00 0.00 0.00 2.83
136 137 2.642427 AGCTCATTCACACACACACAA 58.358 42.857 0.00 0.00 0.00 3.33
137 138 2.330440 AGCTCATTCACACACACACA 57.670 45.000 0.00 0.00 0.00 3.72
138 139 4.715896 CATTAGCTCATTCACACACACAC 58.284 43.478 0.00 0.00 0.00 3.82
139 140 3.189080 GCATTAGCTCATTCACACACACA 59.811 43.478 0.00 0.00 37.91 3.72
140 141 3.751621 GCATTAGCTCATTCACACACAC 58.248 45.455 0.00 0.00 37.91 3.82
154 155 1.221414 CCGACCAGCTTAGCATTAGC 58.779 55.000 7.07 0.00 42.56 3.09
155 156 1.221414 GCCGACCAGCTTAGCATTAG 58.779 55.000 7.07 0.00 0.00 1.73
156 157 0.539518 TGCCGACCAGCTTAGCATTA 59.460 50.000 7.07 0.00 0.00 1.90
195 196 0.814010 GCTATGGTACGTTGCCCCTG 60.814 60.000 0.00 0.00 0.00 4.45
209 210 1.931906 AGCGATGTGTCAGTGCTATG 58.068 50.000 0.00 0.00 33.37 2.23
234 235 1.227674 GCCTGAGGCTGTAATCCGG 60.228 63.158 17.96 0.00 46.69 5.14
442 443 1.444553 GAGAAGTGGACGACGGCTG 60.445 63.158 0.00 0.00 0.00 4.85
450 451 2.507324 GAGCGCGGAGAAGTGGAC 60.507 66.667 8.83 0.00 0.00 4.02
529 530 2.892852 TCACTCCCAATGCAAGAAAAGG 59.107 45.455 0.00 0.00 0.00 3.11
576 577 5.382618 AACACCAATTTGAAGCATCTCTC 57.617 39.130 0.00 0.00 0.00 3.20
577 578 4.219288 GGAACACCAATTTGAAGCATCTCT 59.781 41.667 0.00 0.00 0.00 3.10
603 604 0.178961 AGCACCCCAACCTCCTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
616 618 2.106477 CTCCAAGAAGAAGAGCACCC 57.894 55.000 0.00 0.00 0.00 4.61
621 623 5.619625 ATTTTTCGCTCCAAGAAGAAGAG 57.380 39.130 0.00 0.00 0.00 2.85
839 846 0.459237 CGTAGAAGCTGCTGTCAGGG 60.459 60.000 3.74 0.00 40.65 4.45
861 868 2.264794 GACCCTGACGCCGTTGAT 59.735 61.111 0.00 0.00 0.00 2.57
890 897 1.875813 GTCCTCGTGATGAGCGCAG 60.876 63.158 11.47 0.00 43.82 5.18
896 903 1.676529 GAATCCTCGTCCTCGTGATGA 59.323 52.381 0.92 0.92 37.45 2.92
900 907 1.064296 CGGAATCCTCGTCCTCGTG 59.936 63.158 0.00 0.00 38.33 4.35
901 908 2.119655 CCGGAATCCTCGTCCTCGT 61.120 63.158 0.00 0.00 38.33 4.18
922 929 3.003763 GGAAGCCCGAGGACTGGT 61.004 66.667 0.00 0.00 0.00 4.00
969 976 1.500474 AGCCCTGAAGCAGCACTATA 58.500 50.000 0.00 0.00 34.23 1.31
1000 1007 2.586792 GCGGCTCCAGGAGAACAT 59.413 61.111 21.89 0.00 0.00 2.71
1089 1096 3.866582 GACCATCTGGCCCGGGAG 61.867 72.222 29.31 14.83 39.32 4.30
1102 1109 4.077184 GGTGTCATCGCCGGACCA 62.077 66.667 5.05 0.00 34.36 4.02
1226 1233 4.142838 CGATACAGAAAAATGCAGTGCAGA 60.143 41.667 24.20 0.00 43.65 4.26
1240 1247 2.028420 AGCAATGCAGCGATACAGAA 57.972 45.000 8.35 0.00 40.15 3.02
1246 1253 2.489329 ACAAAACTAGCAATGCAGCGAT 59.511 40.909 8.35 0.00 40.15 4.58
1249 1256 4.050553 TCAAACAAAACTAGCAATGCAGC 58.949 39.130 8.35 0.00 0.00 5.25
1256 1263 6.065374 TGTCCCTTATCAAACAAAACTAGCA 58.935 36.000 0.00 0.00 0.00 3.49
1273 1280 6.096846 CCGGAAAATTAATCTCAATGTCCCTT 59.903 38.462 0.00 0.00 0.00 3.95
1275 1282 5.359860 ACCGGAAAATTAATCTCAATGTCCC 59.640 40.000 9.46 0.00 0.00 4.46
1439 1446 3.013932 CTGCCCCTTCCTGCTCCT 61.014 66.667 0.00 0.00 0.00 3.69
1573 1580 3.231207 AGCTCTGACCGTATCCTGTAT 57.769 47.619 0.00 0.00 0.00 2.29
1575 1582 1.853963 AAGCTCTGACCGTATCCTGT 58.146 50.000 0.00 0.00 0.00 4.00
1617 1624 2.854777 CGCCAGTGAAGATCGTAGAAAG 59.145 50.000 0.00 0.00 43.58 2.62
1651 1658 2.435805 AGTGAGTCAGGAAAGAGCAACA 59.564 45.455 0.00 0.00 0.00 3.33
1697 1710 2.368311 TTTTGCGGGTTCTTTAGGGT 57.632 45.000 0.00 0.00 0.00 4.34
1705 1718 8.600625 GGATTAAATTCTAAATTTTGCGGGTTC 58.399 33.333 0.00 0.00 0.00 3.62
1731 1744 1.089112 GACGTATTTTGGAACGGGGG 58.911 55.000 0.00 0.00 43.25 5.40
1732 1745 1.089112 GGACGTATTTTGGAACGGGG 58.911 55.000 0.00 0.00 43.25 5.73
1734 1747 1.735571 CCAGGACGTATTTTGGAACGG 59.264 52.381 0.00 0.00 43.25 4.44
1735 1748 2.419667 ACCAGGACGTATTTTGGAACG 58.580 47.619 12.39 0.00 44.47 3.95
1736 1749 4.841443 AAACCAGGACGTATTTTGGAAC 57.159 40.909 12.39 0.00 34.76 3.62
1737 1750 6.063404 ACTAAAACCAGGACGTATTTTGGAA 58.937 36.000 12.39 0.00 34.76 3.53
1738 1751 5.623169 ACTAAAACCAGGACGTATTTTGGA 58.377 37.500 12.39 0.00 34.76 3.53
1739 1752 5.952526 ACTAAAACCAGGACGTATTTTGG 57.047 39.130 0.00 0.00 36.76 3.28
1740 1753 6.961576 TGAACTAAAACCAGGACGTATTTTG 58.038 36.000 0.00 0.00 0.00 2.44
1741 1754 7.571080 TTGAACTAAAACCAGGACGTATTTT 57.429 32.000 0.00 0.00 0.00 1.82
1742 1755 7.571080 TTTGAACTAAAACCAGGACGTATTT 57.429 32.000 0.00 0.00 0.00 1.40
1743 1756 7.754851 ATTTGAACTAAAACCAGGACGTATT 57.245 32.000 0.00 0.00 0.00 1.89
1744 1757 7.754851 AATTTGAACTAAAACCAGGACGTAT 57.245 32.000 0.00 0.00 0.00 3.06
1745 1758 7.571080 AAATTTGAACTAAAACCAGGACGTA 57.429 32.000 0.00 0.00 0.00 3.57
1746 1759 6.459670 AAATTTGAACTAAAACCAGGACGT 57.540 33.333 0.00 0.00 0.00 4.34
1747 1760 6.975772 TCAAAATTTGAACTAAAACCAGGACG 59.024 34.615 5.87 0.00 36.59 4.79
1748 1761 8.710835 TTCAAAATTTGAACTAAAACCAGGAC 57.289 30.769 16.28 0.00 44.21 3.85
1761 1774 6.603095 CCGTGGTTTTTGTTCAAAATTTGAA 58.397 32.000 16.28 16.28 46.68 2.69
1762 1775 5.390991 GCCGTGGTTTTTGTTCAAAATTTGA 60.391 36.000 4.03 4.03 36.72 2.69
1763 1776 4.790651 GCCGTGGTTTTTGTTCAAAATTTG 59.209 37.500 10.77 0.00 36.72 2.32
1764 1777 4.455877 TGCCGTGGTTTTTGTTCAAAATTT 59.544 33.333 10.77 0.00 36.72 1.82
1765 1778 4.003648 TGCCGTGGTTTTTGTTCAAAATT 58.996 34.783 10.77 0.00 36.72 1.82
1766 1779 3.600388 TGCCGTGGTTTTTGTTCAAAAT 58.400 36.364 10.77 0.00 36.72 1.82
1767 1780 3.040147 TGCCGTGGTTTTTGTTCAAAA 57.960 38.095 6.61 6.61 31.50 2.44
1768 1781 2.743636 TGCCGTGGTTTTTGTTCAAA 57.256 40.000 0.00 0.00 0.00 2.69
1769 1782 2.231478 TCTTGCCGTGGTTTTTGTTCAA 59.769 40.909 0.00 0.00 0.00 2.69
1770 1783 1.819288 TCTTGCCGTGGTTTTTGTTCA 59.181 42.857 0.00 0.00 0.00 3.18
1771 1784 2.570442 TCTTGCCGTGGTTTTTGTTC 57.430 45.000 0.00 0.00 0.00 3.18
1772 1785 3.535280 ATTCTTGCCGTGGTTTTTGTT 57.465 38.095 0.00 0.00 0.00 2.83
1773 1786 3.535280 AATTCTTGCCGTGGTTTTTGT 57.465 38.095 0.00 0.00 0.00 2.83
1774 1787 4.495514 CCAAAATTCTTGCCGTGGTTTTTG 60.496 41.667 0.00 0.00 34.19 2.44
1775 1788 3.625313 CCAAAATTCTTGCCGTGGTTTTT 59.375 39.130 0.00 0.00 0.00 1.94
1776 1789 3.118592 TCCAAAATTCTTGCCGTGGTTTT 60.119 39.130 0.00 0.00 0.00 2.43
1777 1790 2.432510 TCCAAAATTCTTGCCGTGGTTT 59.567 40.909 0.00 0.00 0.00 3.27
1778 1791 2.035632 TCCAAAATTCTTGCCGTGGTT 58.964 42.857 0.00 0.00 0.00 3.67
1779 1792 1.698506 TCCAAAATTCTTGCCGTGGT 58.301 45.000 0.00 0.00 0.00 4.16
1780 1793 2.223923 TGTTCCAAAATTCTTGCCGTGG 60.224 45.455 0.00 0.00 0.00 4.94
1781 1794 3.052036 CTGTTCCAAAATTCTTGCCGTG 58.948 45.455 0.00 0.00 0.00 4.94
1782 1795 2.955660 TCTGTTCCAAAATTCTTGCCGT 59.044 40.909 0.00 0.00 0.00 5.68
1783 1796 3.568538 CTCTGTTCCAAAATTCTTGCCG 58.431 45.455 0.00 0.00 0.00 5.69
1784 1797 3.306294 CCCTCTGTTCCAAAATTCTTGCC 60.306 47.826 0.00 0.00 0.00 4.52
1785 1798 3.573967 TCCCTCTGTTCCAAAATTCTTGC 59.426 43.478 0.00 0.00 0.00 4.01
1786 1799 4.829492 ACTCCCTCTGTTCCAAAATTCTTG 59.171 41.667 0.00 0.00 0.00 3.02
1787 1800 5.066913 ACTCCCTCTGTTCCAAAATTCTT 57.933 39.130 0.00 0.00 0.00 2.52
1788 1801 4.731313 ACTCCCTCTGTTCCAAAATTCT 57.269 40.909 0.00 0.00 0.00 2.40
1789 1802 5.561679 AGTACTCCCTCTGTTCCAAAATTC 58.438 41.667 0.00 0.00 0.00 2.17
1790 1803 5.584551 AGTACTCCCTCTGTTCCAAAATT 57.415 39.130 0.00 0.00 0.00 1.82
1791 1804 5.310857 AGAAGTACTCCCTCTGTTCCAAAAT 59.689 40.000 0.00 0.00 0.00 1.82
1792 1805 4.658901 AGAAGTACTCCCTCTGTTCCAAAA 59.341 41.667 0.00 0.00 0.00 2.44
1793 1806 4.232091 AGAAGTACTCCCTCTGTTCCAAA 58.768 43.478 0.00 0.00 0.00 3.28
1794 1807 3.858135 AGAAGTACTCCCTCTGTTCCAA 58.142 45.455 0.00 0.00 0.00 3.53
1795 1808 3.544698 AGAAGTACTCCCTCTGTTCCA 57.455 47.619 0.00 0.00 0.00 3.53
1796 1809 5.997384 TTAAGAAGTACTCCCTCTGTTCC 57.003 43.478 0.00 0.00 0.00 3.62
1797 1810 8.751242 ACTATTTAAGAAGTACTCCCTCTGTTC 58.249 37.037 0.00 0.00 0.00 3.18
1798 1811 8.667592 ACTATTTAAGAAGTACTCCCTCTGTT 57.332 34.615 0.00 0.00 0.00 3.16
1799 1812 7.894364 TGACTATTTAAGAAGTACTCCCTCTGT 59.106 37.037 0.00 0.00 0.00 3.41
1800 1813 8.294954 TGACTATTTAAGAAGTACTCCCTCTG 57.705 38.462 0.00 0.00 0.00 3.35
1801 1814 8.896722 TTGACTATTTAAGAAGTACTCCCTCT 57.103 34.615 0.00 0.00 0.00 3.69
1802 1815 9.939802 TTTTGACTATTTAAGAAGTACTCCCTC 57.060 33.333 0.00 0.00 0.00 4.30
1862 1877 7.056635 TCAATCTCACCTATGAAAAGGAATCC 58.943 38.462 0.00 0.00 39.15 3.01
1863 1878 8.688747 ATCAATCTCACCTATGAAAAGGAATC 57.311 34.615 0.00 0.00 39.15 2.52
2040 2062 5.819991 TGGATCTTAGTGGCTGAAAGAAAT 58.180 37.500 0.00 0.00 34.07 2.17
2107 2129 6.925211 TCTTGACTTAGGTGTAGAATCTGTG 58.075 40.000 0.00 0.00 0.00 3.66
2117 2139 2.037772 CTGGCACTCTTGACTTAGGTGT 59.962 50.000 0.00 0.00 0.00 4.16
2122 2144 4.014406 TCGATACTGGCACTCTTGACTTA 58.986 43.478 0.00 0.00 0.00 2.24
2140 2162 2.727123 TCTCAGAGAGCCTCTTCGAT 57.273 50.000 0.00 0.00 38.99 3.59
2194 2216 6.349300 ACACAGATAAGGATAACATGACCAC 58.651 40.000 0.00 0.00 0.00 4.16
2202 2224 8.414778 AGCACTAACTACACAGATAAGGATAAC 58.585 37.037 0.00 0.00 0.00 1.89
2220 2242 4.451629 TTAGTCCAGCAGTAGCACTAAC 57.548 45.455 0.00 0.00 45.49 2.34
2221 2243 5.677319 ATTTAGTCCAGCAGTAGCACTAA 57.323 39.130 0.00 0.00 45.49 2.24
2222 2244 6.323996 ACATATTTAGTCCAGCAGTAGCACTA 59.676 38.462 0.00 0.00 45.49 2.74
2232 2257 4.818546 ACATCAGCACATATTTAGTCCAGC 59.181 41.667 0.00 0.00 0.00 4.85
2423 2448 0.721718 GCGCTAGACGTTCAGCATTT 59.278 50.000 18.73 0.00 46.11 2.32
2435 2460 2.278596 GGAATCGCACGCGCTAGA 60.279 61.111 5.73 2.65 39.59 2.43
2471 2496 3.193267 GCAAGTGCCCACAATTCTTGATA 59.807 43.478 7.28 0.00 38.06 2.15
2525 2550 0.238289 GTAGGAACCGTTCGACGACA 59.762 55.000 0.00 0.00 46.05 4.35
2549 2574 1.004745 TCATCTGGAGTTCCAAAGGCC 59.995 52.381 0.00 0.00 46.97 5.19
2552 2577 3.063510 TGCTCATCTGGAGTTCCAAAG 57.936 47.619 1.99 0.00 46.97 2.77
2595 2620 1.762419 GCATTTACCAGCATGCATCG 58.238 50.000 21.98 8.82 44.49 3.84
2644 2669 7.287696 ACAATTGTAGGTCCATCTGTTCTTTTT 59.712 33.333 9.97 0.00 0.00 1.94
2645 2670 6.777580 ACAATTGTAGGTCCATCTGTTCTTTT 59.222 34.615 9.97 0.00 0.00 2.27
2646 2671 6.306987 ACAATTGTAGGTCCATCTGTTCTTT 58.693 36.000 9.97 0.00 0.00 2.52
2647 2672 5.880901 ACAATTGTAGGTCCATCTGTTCTT 58.119 37.500 9.97 0.00 0.00 2.52
2648 2673 5.249393 AGACAATTGTAGGTCCATCTGTTCT 59.751 40.000 11.95 0.00 34.58 3.01
2649 2674 5.491982 AGACAATTGTAGGTCCATCTGTTC 58.508 41.667 11.95 0.00 34.58 3.18
2650 2675 5.491982 GAGACAATTGTAGGTCCATCTGTT 58.508 41.667 11.95 0.00 34.58 3.16
2651 2676 4.382040 CGAGACAATTGTAGGTCCATCTGT 60.382 45.833 11.95 0.00 34.58 3.41
2666 2691 3.021695 TCGTTATCCCTGTCGAGACAAT 58.978 45.455 7.38 1.34 41.33 2.71
2712 2745 3.438216 TGGATCTCCAACAGAAATGCA 57.562 42.857 0.00 0.00 44.35 3.96
2724 2757 6.320672 CCATGGCTATTAAATGATGGATCTCC 59.679 42.308 0.00 0.00 33.52 3.71
2725 2758 6.320672 CCCATGGCTATTAAATGATGGATCTC 59.679 42.308 6.09 0.00 33.52 2.75
2726 2759 6.192773 CCCATGGCTATTAAATGATGGATCT 58.807 40.000 6.09 0.00 33.52 2.75
2727 2760 5.954150 ACCCATGGCTATTAAATGATGGATC 59.046 40.000 6.09 0.00 33.52 3.36
2728 2761 5.718130 CACCCATGGCTATTAAATGATGGAT 59.282 40.000 6.09 0.00 33.52 3.41
2729 2762 5.078949 CACCCATGGCTATTAAATGATGGA 58.921 41.667 6.09 0.00 33.52 3.41
2770 2803 6.707440 TCTCTTATCCAACTTTGCACAAAA 57.293 33.333 0.00 0.00 0.00 2.44
2771 2804 6.707440 TTCTCTTATCCAACTTTGCACAAA 57.293 33.333 0.00 0.00 0.00 2.83
2919 2970 6.489700 ACATCCATGACATTCTGTAAACAACA 59.510 34.615 0.00 0.00 36.42 3.33
2920 2971 6.913170 ACATCCATGACATTCTGTAAACAAC 58.087 36.000 0.00 0.00 0.00 3.32
2939 2990 6.162777 GGCAGAGAGAGTAATTGATACATCC 58.837 44.000 0.00 0.00 36.94 3.51
2950 3001 8.177456 TCTTATATTATGGGGCAGAGAGAGTAA 58.823 37.037 0.00 0.00 0.00 2.24
2955 3006 6.102663 CGTTCTTATATTATGGGGCAGAGAG 58.897 44.000 0.00 0.00 0.00 3.20
2956 3007 5.542635 ACGTTCTTATATTATGGGGCAGAGA 59.457 40.000 0.00 0.00 0.00 3.10
2957 3008 5.639506 CACGTTCTTATATTATGGGGCAGAG 59.360 44.000 0.00 0.00 0.00 3.35
2958 3009 5.071250 ACACGTTCTTATATTATGGGGCAGA 59.929 40.000 0.00 0.00 0.00 4.26
2959 3010 5.179368 CACACGTTCTTATATTATGGGGCAG 59.821 44.000 0.00 0.00 0.00 4.85
2960 3011 5.060506 CACACGTTCTTATATTATGGGGCA 58.939 41.667 0.00 0.00 0.00 5.36
2961 3012 5.061179 ACACACGTTCTTATATTATGGGGC 58.939 41.667 0.00 0.00 0.00 5.80
2962 3013 8.665643 TTAACACACGTTCTTATATTATGGGG 57.334 34.615 0.00 0.00 36.52 4.96
2967 3018 9.527566 GCGTTTTTAACACACGTTCTTATATTA 57.472 29.630 0.00 0.00 36.52 0.98
2968 3019 8.284693 AGCGTTTTTAACACACGTTCTTATATT 58.715 29.630 0.00 0.00 36.52 1.28
2969 3020 7.799784 AGCGTTTTTAACACACGTTCTTATAT 58.200 30.769 0.00 0.00 36.52 0.86
2970 3021 7.176285 AGCGTTTTTAACACACGTTCTTATA 57.824 32.000 0.00 0.00 36.52 0.98
2971 3022 6.051646 AGCGTTTTTAACACACGTTCTTAT 57.948 33.333 0.00 0.00 36.52 1.73
2972 3023 5.467902 AGCGTTTTTAACACACGTTCTTA 57.532 34.783 0.00 0.00 36.52 2.10
2973 3024 4.336932 GAGCGTTTTTAACACACGTTCTT 58.663 39.130 8.82 0.00 39.99 2.52
2974 3025 3.619929 AGAGCGTTTTTAACACACGTTCT 59.380 39.130 11.52 11.52 45.88 3.01
2975 3026 3.931824 AGAGCGTTTTTAACACACGTTC 58.068 40.909 8.29 8.29 42.46 3.95
2976 3027 4.345271 AAGAGCGTTTTTAACACACGTT 57.655 36.364 0.00 0.00 39.24 3.99
2977 3028 5.662211 ATAAGAGCGTTTTTAACACACGT 57.338 34.783 0.00 0.00 36.29 4.49
2978 3029 9.910511 ATAATATAAGAGCGTTTTTAACACACG 57.089 29.630 0.00 0.00 36.98 4.49
2981 3032 9.659830 CCCATAATATAAGAGCGTTTTTAACAC 57.340 33.333 0.00 0.00 0.00 3.32
2982 3033 9.616156 TCCCATAATATAAGAGCGTTTTTAACA 57.384 29.630 0.00 0.00 0.00 2.41
2983 3034 9.874215 GTCCCATAATATAAGAGCGTTTTTAAC 57.126 33.333 0.00 0.00 0.00 2.01
2984 3035 8.767085 CGTCCCATAATATAAGAGCGTTTTTAA 58.233 33.333 0.00 0.00 0.00 1.52
2985 3036 7.385752 CCGTCCCATAATATAAGAGCGTTTTTA 59.614 37.037 0.00 0.00 0.00 1.52
2986 3037 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2987 3038 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2988 3039 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2989 3040 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2990 3041 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2991 3042 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2992 3043 4.466726 ACCTCCGTCCCATAATATAAGAGC 59.533 45.833 0.00 0.00 0.00 4.09
2993 3044 6.890814 ACTACCTCCGTCCCATAATATAAGAG 59.109 42.308 0.00 0.00 0.00 2.85
2994 3045 6.797707 ACTACCTCCGTCCCATAATATAAGA 58.202 40.000 0.00 0.00 0.00 2.10
2995 3046 7.833183 AGTACTACCTCCGTCCCATAATATAAG 59.167 40.741 0.00 0.00 0.00 1.73
2996 3047 7.613022 CAGTACTACCTCCGTCCCATAATATAA 59.387 40.741 0.00 0.00 0.00 0.98
2997 3048 7.114754 CAGTACTACCTCCGTCCCATAATATA 58.885 42.308 0.00 0.00 0.00 0.86
2998 3049 5.950549 CAGTACTACCTCCGTCCCATAATAT 59.049 44.000 0.00 0.00 0.00 1.28
2999 3050 5.163055 ACAGTACTACCTCCGTCCCATAATA 60.163 44.000 0.00 0.00 0.00 0.98
3000 3051 4.150359 CAGTACTACCTCCGTCCCATAAT 58.850 47.826 0.00 0.00 0.00 1.28
3001 3052 3.053395 ACAGTACTACCTCCGTCCCATAA 60.053 47.826 0.00 0.00 0.00 1.90
3002 3053 2.511218 ACAGTACTACCTCCGTCCCATA 59.489 50.000 0.00 0.00 0.00 2.74
3003 3054 1.287146 ACAGTACTACCTCCGTCCCAT 59.713 52.381 0.00 0.00 0.00 4.00
3004 3055 0.700564 ACAGTACTACCTCCGTCCCA 59.299 55.000 0.00 0.00 0.00 4.37
3005 3056 1.844687 AACAGTACTACCTCCGTCCC 58.155 55.000 0.00 0.00 0.00 4.46
3006 3057 5.359292 AGATTAAACAGTACTACCTCCGTCC 59.641 44.000 0.00 0.00 0.00 4.79
3007 3058 6.448207 AGATTAAACAGTACTACCTCCGTC 57.552 41.667 0.00 0.00 0.00 4.79
3008 3059 6.847421 AAGATTAAACAGTACTACCTCCGT 57.153 37.500 0.00 0.00 0.00 4.69
3009 3060 7.412672 GCAAAAGATTAAACAGTACTACCTCCG 60.413 40.741 0.00 0.00 0.00 4.63
3010 3061 7.389607 TGCAAAAGATTAAACAGTACTACCTCC 59.610 37.037 0.00 0.00 0.00 4.30
3011 3062 8.319143 TGCAAAAGATTAAACAGTACTACCTC 57.681 34.615 0.00 0.00 0.00 3.85
3012 3063 8.863872 ATGCAAAAGATTAAACAGTACTACCT 57.136 30.769 0.00 0.00 0.00 3.08
3016 3067 9.726438 ACTCTATGCAAAAGATTAAACAGTACT 57.274 29.630 0.00 0.00 0.00 2.73
3019 3070 9.066892 TCAACTCTATGCAAAAGATTAAACAGT 57.933 29.630 0.00 0.00 0.00 3.55
3020 3071 9.897744 TTCAACTCTATGCAAAAGATTAAACAG 57.102 29.630 0.00 0.00 0.00 3.16
3060 3111 8.133024 ACAACAGCATAAATAAATCAAGGGAA 57.867 30.769 0.00 0.00 0.00 3.97
3083 3134 6.048732 TCAAGTTATGTTGCAGGATAGACA 57.951 37.500 0.00 0.00 0.00 3.41
3117 3168 5.994668 GGTGCTGTCAAATTTTATTGGGAAA 59.005 36.000 0.00 0.00 0.00 3.13
3145 3197 6.721571 ACATAAACTGTAGATTTGTGGACG 57.278 37.500 0.00 0.00 35.91 4.79
3208 3269 1.624487 TTTCGTCGTCATGGATGTCG 58.376 50.000 0.00 0.57 39.92 4.35
3318 3382 8.795513 CATGTGTGGAAGATGGCATTATTTATA 58.204 33.333 0.00 0.00 0.00 0.98
3319 3383 7.506599 TCATGTGTGGAAGATGGCATTATTTAT 59.493 33.333 0.00 0.00 30.44 1.40
3398 3462 0.601558 TTCTGTCTCCGAGGAAACCG 59.398 55.000 0.00 0.00 0.00 4.44
3409 3473 0.962855 GCCCCAGCCTTTTCTGTCTC 60.963 60.000 0.00 0.00 32.32 3.36
3483 3551 3.190874 GAGAATGCCGACTGTAAAGAGG 58.809 50.000 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.