Multiple sequence alignment - TraesCS5B01G144800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G144800 chr5B 100.000 4406 0 0 1 4406 271952691 271957096 0.000000e+00 8137.0
1 TraesCS5B01G144800 chr5B 91.667 84 5 2 1982 2065 284833827 284833908 1.000000e-21 115.0
2 TraesCS5B01G144800 chr5A 91.043 2043 85 35 1 2004 321927593 321929576 0.000000e+00 2669.0
3 TraesCS5B01G144800 chr5A 92.173 1252 61 13 2746 3972 321929572 321930811 0.000000e+00 1735.0
4 TraesCS5B01G144800 chr5A 80.428 327 21 23 4036 4342 321930808 321931111 4.470000e-50 209.0
5 TraesCS5B01G144800 chr5A 96.429 56 2 0 2624 2679 410467671 410467726 4.690000e-15 93.5
6 TraesCS5B01G144800 chr5A 85.227 88 9 2 3956 4039 379130905 379130992 2.180000e-13 87.9
7 TraesCS5B01G144800 chr5D 93.820 1246 52 14 2746 3972 233020816 233019577 0.000000e+00 1851.0
8 TraesCS5B01G144800 chr5D 93.761 1106 35 16 902 2004 233021886 233020812 0.000000e+00 1629.0
9 TraesCS5B01G144800 chr5D 90.809 816 41 14 1 805 233035882 233035090 0.000000e+00 1061.0
10 TraesCS5B01G144800 chr5D 88.088 319 8 3 4036 4342 233019580 233019280 7.010000e-93 351.0
11 TraesCS5B01G144800 chr5D 98.630 73 1 0 2680 2752 393056333 393056405 3.580000e-26 130.0
12 TraesCS5B01G144800 chr5D 92.857 56 2 1 854 909 233035029 233034976 3.650000e-11 80.5
13 TraesCS5B01G144800 chr7B 94.898 490 18 4 2061 2544 655811497 655811009 0.000000e+00 760.0
14 TraesCS5B01G144800 chr7B 84.967 306 29 9 3642 3932 204157801 204157498 1.200000e-75 294.0
15 TraesCS5B01G144800 chr7B 94.915 118 5 1 2568 2685 655809231 655809115 2.710000e-42 183.0
16 TraesCS5B01G144800 chr7B 93.976 83 3 2 2680 2761 285329943 285330024 1.660000e-24 124.0
17 TraesCS5B01G144800 chr7B 96.491 57 2 0 2623 2679 41313128 41313184 1.300000e-15 95.3
18 TraesCS5B01G144800 chr7B 85.542 83 7 4 3958 4039 18081130 18081208 1.020000e-11 82.4
19 TraesCS5B01G144800 chr3B 86.928 306 23 9 3642 3932 761575718 761575415 1.180000e-85 327.0
20 TraesCS5B01G144800 chr3B 86.275 306 25 9 3642 3932 554032551 554032248 2.560000e-82 316.0
21 TraesCS5B01G144800 chr3B 95.122 82 3 1 2680 2761 22647405 22647325 1.290000e-25 128.0
22 TraesCS5B01G144800 chr3B 100.000 67 0 0 2000 2066 596444541 596444475 1.660000e-24 124.0
23 TraesCS5B01G144800 chr3B 98.529 68 1 0 1999 2066 378689293 378689226 2.150000e-23 121.0
24 TraesCS5B01G144800 chr1B 86.139 303 25 9 3642 3929 646680100 646680400 1.190000e-80 311.0
25 TraesCS5B01G144800 chr1B 84.967 306 29 9 3642 3932 664597321 664597018 1.200000e-75 294.0
26 TraesCS5B01G144800 chr1B 98.611 72 1 0 2680 2751 40852087 40852016 1.290000e-25 128.0
27 TraesCS5B01G144800 chr1B 93.590 78 5 0 1989 2066 623731973 623732050 2.780000e-22 117.0
28 TraesCS5B01G144800 chr2B 85.809 303 25 10 3642 3929 797244439 797244738 5.540000e-79 305.0
29 TraesCS5B01G144800 chr2B 88.158 76 4 2 3969 4039 226700382 226700307 7.850000e-13 86.1
30 TraesCS5B01G144800 chr2B 89.130 46 5 0 2982 3027 775028677 775028722 1.710000e-04 58.4
31 TraesCS5B01G144800 chr6A 85.374 294 25 10 3654 3932 606596425 606596135 5.580000e-74 289.0
32 TraesCS5B01G144800 chr6A 85.882 85 7 4 3968 4049 501479364 501479282 7.850000e-13 86.1
33 TraesCS5B01G144800 chr4B 97.368 76 1 1 2680 2755 529207619 529207693 1.290000e-25 128.0
34 TraesCS5B01G144800 chr4B 93.506 77 4 1 1990 2066 450453462 450453537 3.600000e-21 113.0
35 TraesCS5B01G144800 chr1D 98.630 73 0 1 2680 2752 255827824 255827753 1.290000e-25 128.0
36 TraesCS5B01G144800 chr1D 98.611 72 1 0 2680 2751 493313584 493313655 1.290000e-25 128.0
37 TraesCS5B01G144800 chr1D 91.667 84 7 0 2680 2763 63832736 63832653 2.780000e-22 117.0
38 TraesCS5B01G144800 chr1D 89.189 74 5 1 3971 4041 370323728 370323655 6.070000e-14 89.8
39 TraesCS5B01G144800 chr3D 96.053 76 2 1 2680 2755 351086683 351086757 5.980000e-24 122.0
40 TraesCS5B01G144800 chr3D 93.671 79 2 2 1991 2066 351086612 351086690 1.000000e-21 115.0
41 TraesCS5B01G144800 chr4A 95.890 73 2 1 1993 2065 656751182 656751253 2.780000e-22 117.0
42 TraesCS5B01G144800 chr6D 94.521 73 2 1 2001 2073 183707724 183707654 1.300000e-20 111.0
43 TraesCS5B01G144800 chr7A 93.243 74 5 0 1993 2066 398785743 398785670 4.660000e-20 110.0
44 TraesCS5B01G144800 chr7A 90.000 70 6 1 3971 4039 68881171 68881102 6.070000e-14 89.8
45 TraesCS5B01G144800 chr7D 91.429 70 5 1 3971 4039 179191219 179191288 1.300000e-15 95.3
46 TraesCS5B01G144800 chr2D 94.737 57 3 0 2623 2679 60547382 60547438 6.070000e-14 89.8
47 TraesCS5B01G144800 chr1A 88.732 71 7 1 3970 4039 313907478 313907548 7.850000e-13 86.1
48 TraesCS5B01G144800 chrUn 87.838 74 5 2 3969 4039 137782233 137782305 2.820000e-12 84.2
49 TraesCS5B01G144800 chr2A 92.593 54 4 0 2624 2677 625126066 625126013 1.310000e-10 78.7
50 TraesCS5B01G144800 chr3A 95.652 46 1 1 2987 3031 296449301 296449256 6.110000e-09 73.1
51 TraesCS5B01G144800 chr3A 97.561 41 1 0 2642 2682 544422073 544422113 2.200000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G144800 chr5B 271952691 271957096 4405 False 8137.000000 8137 100.000000 1 4406 1 chr5B.!!$F1 4405
1 TraesCS5B01G144800 chr5A 321927593 321931111 3518 False 1537.666667 2669 87.881333 1 4342 3 chr5A.!!$F3 4341
2 TraesCS5B01G144800 chr5D 233019280 233021886 2606 True 1277.000000 1851 91.889667 902 4342 3 chr5D.!!$R1 3440
3 TraesCS5B01G144800 chr5D 233034976 233035882 906 True 570.750000 1061 91.833000 1 909 2 chr5D.!!$R2 908
4 TraesCS5B01G144800 chr7B 655809115 655811497 2382 True 471.500000 760 94.906500 2061 2685 2 chr7B.!!$R2 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 458 0.461339 CACTACAACGGGGCGCTAAT 60.461 55.000 7.64 0.00 0.00 1.73 F
969 1029 1.079543 CAGAGCTCCACTTCCACGG 60.080 63.158 10.93 0.00 0.00 4.94 F
2475 2561 0.461339 GAGAAGATTACGGCGGGCAA 60.461 55.000 13.24 2.15 0.00 4.52 F
2564 2650 0.107165 GCCTGAGGAATTTACCGCCT 60.107 55.000 0.65 0.00 34.73 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1580 0.029567 CGCCGTTTGCCACTGTAAAA 59.970 50.000 0.00 0.00 36.24 1.52 R
2545 2631 0.107165 AGGCGGTAAATTCCTCAGGC 60.107 55.000 0.00 0.00 0.00 4.85 R
3360 5212 0.967662 TCATTGTTGTGGCACCCATG 59.032 50.000 16.26 11.45 35.28 3.66 R
4383 6278 1.070108 GCTGTATGACGATGCATGCTG 60.070 52.381 20.33 11.24 34.57 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.038710 CTGACAAAGAAAAGCAAGCGAC 58.961 45.455 0.00 0.00 0.00 5.19
57 58 2.010145 GCGACTGCTCCAGTTAATGA 57.990 50.000 0.00 0.00 45.44 2.57
58 59 1.661112 GCGACTGCTCCAGTTAATGAC 59.339 52.381 0.00 0.00 45.44 3.06
60 61 1.661112 GACTGCTCCAGTTAATGACGC 59.339 52.381 0.00 0.00 45.44 5.19
61 62 1.001974 ACTGCTCCAGTTAATGACGCA 59.998 47.619 0.00 0.00 42.59 5.24
62 63 1.662629 CTGCTCCAGTTAATGACGCAG 59.337 52.381 8.21 8.21 41.91 5.18
102 103 9.908152 CGTACATTAAACCAGATGACTATGATA 57.092 33.333 0.00 0.00 0.00 2.15
154 155 4.297299 GCAAATAGAATGCAGCAGCTAA 57.703 40.909 10.79 0.00 43.29 3.09
162 163 2.490328 TGCAGCAGCTAACAAACAAC 57.510 45.000 1.76 0.00 42.74 3.32
232 233 2.475864 CACACCAACCAAATCATTTGCG 59.524 45.455 4.40 1.22 39.31 4.85
258 260 2.752903 CCCCCGTGTTTTCCTTCATTAG 59.247 50.000 0.00 0.00 0.00 1.73
263 265 5.009210 CCCGTGTTTTCCTTCATTAGTTTCA 59.991 40.000 0.00 0.00 0.00 2.69
304 306 4.770010 TCAATTTAATCGCCACCCTCTTTT 59.230 37.500 0.00 0.00 0.00 2.27
317 319 4.517453 CACCCTCTTTTTATCACGGAACAA 59.483 41.667 0.00 0.00 0.00 2.83
401 403 1.791785 GAGAGGTACCGAGATCGTACG 59.208 57.143 9.53 9.53 37.74 3.67
409 411 0.657659 CGAGATCGTACGCGCTTCAT 60.658 55.000 11.24 0.00 38.14 2.57
410 412 1.478137 GAGATCGTACGCGCTTCATT 58.522 50.000 11.24 0.00 38.14 2.57
413 415 2.787680 AGATCGTACGCGCTTCATTAAC 59.212 45.455 11.24 0.00 38.14 2.01
455 458 0.461339 CACTACAACGGGGCGCTAAT 60.461 55.000 7.64 0.00 0.00 1.73
470 473 1.798813 GCTAATATCAAACGCGAGGGG 59.201 52.381 15.93 0.00 0.00 4.79
542 552 2.033299 CAGCAAACAATCAGTTGACGGT 59.967 45.455 0.00 0.00 41.19 4.83
639 650 1.144936 GGGAACAGCGATCTGGGAG 59.855 63.158 0.00 0.00 44.54 4.30
682 693 3.551407 GGGCTCGGCTAGGGGAAG 61.551 72.222 0.00 0.00 0.00 3.46
683 694 2.444140 GGCTCGGCTAGGGGAAGA 60.444 66.667 0.00 0.00 0.00 2.87
709 720 1.381076 GTCGGAATTGGGGGTTGGA 59.619 57.895 0.00 0.00 0.00 3.53
781 800 5.551760 ACAGTTGCAGGATTTATTTCGAG 57.448 39.130 0.00 0.00 0.00 4.04
844 898 1.407437 CGAGTAGGCCCATTGAAGCTT 60.407 52.381 0.00 0.00 0.00 3.74
845 899 2.019984 GAGTAGGCCCATTGAAGCTTG 58.980 52.381 2.10 0.00 0.00 4.01
852 906 1.138247 CATTGAAGCTTGGGCGCTC 59.862 57.895 2.10 2.47 44.37 5.03
872 926 1.586154 GGCCCATTGAGAACCACACG 61.586 60.000 0.00 0.00 0.00 4.49
969 1029 1.079543 CAGAGCTCCACTTCCACGG 60.080 63.158 10.93 0.00 0.00 4.94
1051 1111 4.228567 TCACCACGCTTGCGGTCA 62.229 61.111 19.19 0.00 31.41 4.02
1052 1112 3.276091 CACCACGCTTGCGGTCAA 61.276 61.111 19.19 0.00 31.41 3.18
1053 1113 2.515057 ACCACGCTTGCGGTCAAA 60.515 55.556 19.19 0.00 0.00 2.69
1371 1431 1.987807 GCTTCATGGGCCTGGAGCTA 61.988 60.000 21.91 0.00 43.32 3.32
1483 1543 2.098443 GTCGTGGTGATCTTCTCCTCTC 59.902 54.545 0.00 0.00 31.62 3.20
1484 1544 2.025793 TCGTGGTGATCTTCTCCTCTCT 60.026 50.000 0.00 0.00 31.62 3.10
1485 1545 2.757868 CGTGGTGATCTTCTCCTCTCTT 59.242 50.000 0.00 0.00 31.62 2.85
1486 1546 3.181491 CGTGGTGATCTTCTCCTCTCTTC 60.181 52.174 0.00 0.00 31.62 2.87
1488 1548 4.466015 GTGGTGATCTTCTCCTCTCTTCTT 59.534 45.833 0.00 0.00 31.62 2.52
1489 1549 4.465660 TGGTGATCTTCTCCTCTCTTCTTG 59.534 45.833 0.00 0.00 31.62 3.02
1490 1550 4.432712 GTGATCTTCTCCTCTCTTCTTGC 58.567 47.826 0.00 0.00 0.00 4.01
1491 1551 4.160252 GTGATCTTCTCCTCTCTTCTTGCT 59.840 45.833 0.00 0.00 0.00 3.91
1492 1552 4.776837 TGATCTTCTCCTCTCTTCTTGCTT 59.223 41.667 0.00 0.00 0.00 3.91
1493 1553 4.533919 TCTTCTCCTCTCTTCTTGCTTG 57.466 45.455 0.00 0.00 0.00 4.01
1494 1554 3.900601 TCTTCTCCTCTCTTCTTGCTTGT 59.099 43.478 0.00 0.00 0.00 3.16
1495 1555 5.080337 TCTTCTCCTCTCTTCTTGCTTGTA 58.920 41.667 0.00 0.00 0.00 2.41
1497 1557 4.667573 TCTCCTCTCTTCTTGCTTGTAGA 58.332 43.478 0.00 0.00 0.00 2.59
1498 1558 5.080337 TCTCCTCTCTTCTTGCTTGTAGAA 58.920 41.667 0.00 0.00 0.00 2.10
1499 1559 5.719085 TCTCCTCTCTTCTTGCTTGTAGAAT 59.281 40.000 0.00 0.00 31.66 2.40
1500 1560 6.212388 TCTCCTCTCTTCTTGCTTGTAGAATT 59.788 38.462 0.00 0.00 31.66 2.17
1501 1561 6.169094 TCCTCTCTTCTTGCTTGTAGAATTG 58.831 40.000 0.00 0.00 31.66 2.32
1502 1562 5.163774 CCTCTCTTCTTGCTTGTAGAATTGC 60.164 44.000 0.00 0.00 31.66 3.56
1503 1563 4.697352 TCTCTTCTTGCTTGTAGAATTGCC 59.303 41.667 0.00 0.00 31.66 4.52
1504 1564 4.397420 TCTTCTTGCTTGTAGAATTGCCA 58.603 39.130 0.00 0.00 31.66 4.92
1505 1565 4.456911 TCTTCTTGCTTGTAGAATTGCCAG 59.543 41.667 0.00 0.00 31.66 4.85
1506 1566 3.754965 TCTTGCTTGTAGAATTGCCAGT 58.245 40.909 0.00 0.00 0.00 4.00
1507 1567 3.503363 TCTTGCTTGTAGAATTGCCAGTG 59.497 43.478 0.00 0.00 0.00 3.66
1508 1568 3.138884 TGCTTGTAGAATTGCCAGTGA 57.861 42.857 0.00 0.00 0.00 3.41
1509 1569 3.076621 TGCTTGTAGAATTGCCAGTGAG 58.923 45.455 0.00 0.00 0.00 3.51
1510 1570 2.421424 GCTTGTAGAATTGCCAGTGAGG 59.579 50.000 0.00 0.00 41.84 3.86
1520 1580 3.540211 CCAGTGAGGCGTTCTTGAT 57.460 52.632 0.00 0.00 0.00 2.57
1521 1581 1.813513 CCAGTGAGGCGTTCTTGATT 58.186 50.000 0.00 0.00 0.00 2.57
1522 1582 2.154462 CCAGTGAGGCGTTCTTGATTT 58.846 47.619 0.00 0.00 0.00 2.17
1523 1583 2.554032 CCAGTGAGGCGTTCTTGATTTT 59.446 45.455 0.00 0.00 0.00 1.82
1524 1584 3.751175 CCAGTGAGGCGTTCTTGATTTTA 59.249 43.478 0.00 0.00 0.00 1.52
1529 1589 4.213270 TGAGGCGTTCTTGATTTTACAGTG 59.787 41.667 0.00 0.00 0.00 3.66
1532 1592 3.304391 GCGTTCTTGATTTTACAGTGGCA 60.304 43.478 0.00 0.00 0.00 4.92
1536 1596 4.854399 TCTTGATTTTACAGTGGCAAACG 58.146 39.130 0.00 0.00 0.00 3.60
1540 1600 1.096386 TTTACAGTGGCAAACGGCGT 61.096 50.000 6.77 6.77 46.16 5.68
1560 1620 3.485216 CGTGAAACCAATGGTTATCGCTC 60.485 47.826 19.06 12.08 46.20 5.03
1561 1621 3.013921 TGAAACCAATGGTTATCGCTCC 58.986 45.455 19.06 3.03 46.20 4.70
1597 1657 7.009179 TCATGGAACTATCTTCAGTGACTTT 57.991 36.000 0.00 0.00 0.00 2.66
1921 2001 8.454106 AGATAATATCCTGCGTTTGAAATATGC 58.546 33.333 0.00 0.00 0.00 3.14
1927 2007 5.645929 TCCTGCGTTTGAAATATGCTTCTTA 59.354 36.000 0.00 0.00 0.00 2.10
1999 2079 3.831911 TCCCAGTCATCACGCATATATCA 59.168 43.478 0.00 0.00 0.00 2.15
2000 2080 4.467438 TCCCAGTCATCACGCATATATCAT 59.533 41.667 0.00 0.00 0.00 2.45
2001 2081 5.656416 TCCCAGTCATCACGCATATATCATA 59.344 40.000 0.00 0.00 0.00 2.15
2002 2082 5.750547 CCCAGTCATCACGCATATATCATAC 59.249 44.000 0.00 0.00 0.00 2.39
2003 2083 6.406288 CCCAGTCATCACGCATATATCATACT 60.406 42.308 0.00 0.00 0.00 2.12
2004 2084 6.694844 CCAGTCATCACGCATATATCATACTC 59.305 42.308 0.00 0.00 0.00 2.59
2005 2085 7.416101 CCAGTCATCACGCATATATCATACTCT 60.416 40.741 0.00 0.00 0.00 3.24
2006 2086 7.643371 CAGTCATCACGCATATATCATACTCTC 59.357 40.741 0.00 0.00 0.00 3.20
2007 2087 7.555914 AGTCATCACGCATATATCATACTCTCT 59.444 37.037 0.00 0.00 0.00 3.10
2008 2088 7.855409 GTCATCACGCATATATCATACTCTCTC 59.145 40.741 0.00 0.00 0.00 3.20
2009 2089 6.685527 TCACGCATATATCATACTCTCTCC 57.314 41.667 0.00 0.00 0.00 3.71
2010 2090 5.294552 TCACGCATATATCATACTCTCTCCG 59.705 44.000 0.00 0.00 0.00 4.63
2011 2091 5.065346 CACGCATATATCATACTCTCTCCGT 59.935 44.000 0.00 0.00 0.00 4.69
2012 2092 5.294799 ACGCATATATCATACTCTCTCCGTC 59.705 44.000 0.00 0.00 0.00 4.79
2013 2093 5.277586 CGCATATATCATACTCTCTCCGTCC 60.278 48.000 0.00 0.00 0.00 4.79
2014 2094 5.009210 GCATATATCATACTCTCTCCGTCCC 59.991 48.000 0.00 0.00 0.00 4.46
2015 2095 4.659529 ATATCATACTCTCTCCGTCCCA 57.340 45.455 0.00 0.00 0.00 4.37
2016 2096 2.820728 TCATACTCTCTCCGTCCCAA 57.179 50.000 0.00 0.00 0.00 4.12
2017 2097 3.095912 TCATACTCTCTCCGTCCCAAA 57.904 47.619 0.00 0.00 0.00 3.28
2018 2098 3.437213 TCATACTCTCTCCGTCCCAAAA 58.563 45.455 0.00 0.00 0.00 2.44
2019 2099 4.030913 TCATACTCTCTCCGTCCCAAAAT 58.969 43.478 0.00 0.00 0.00 1.82
2020 2100 4.469945 TCATACTCTCTCCGTCCCAAAATT 59.530 41.667 0.00 0.00 0.00 1.82
2021 2101 3.336138 ACTCTCTCCGTCCCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
2022 2102 2.907042 ACTCTCTCCGTCCCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
2023 2103 3.328050 ACTCTCTCCGTCCCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
2024 2104 3.674997 TCTCTCCGTCCCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
2025 2105 3.072476 TCTCTCCGTCCCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
2026 2106 3.408634 TCTCCGTCCCAAAATTCTTGTC 58.591 45.455 0.00 0.00 0.00 3.18
2027 2107 3.072476 TCTCCGTCCCAAAATTCTTGTCT 59.928 43.478 0.00 0.00 0.00 3.41
2028 2108 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2029 2109 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2030 2110 4.758165 TCCGTCCCAAAATTCTTGTCTTAC 59.242 41.667 0.00 0.00 0.00 2.34
2031 2111 4.517453 CCGTCCCAAAATTCTTGTCTTACA 59.483 41.667 0.00 0.00 0.00 2.41
2032 2112 5.183140 CCGTCCCAAAATTCTTGTCTTACAT 59.817 40.000 0.00 0.00 0.00 2.29
2033 2113 6.294508 CCGTCCCAAAATTCTTGTCTTACATT 60.295 38.462 0.00 0.00 0.00 2.71
2034 2114 7.145323 CGTCCCAAAATTCTTGTCTTACATTT 58.855 34.615 0.00 0.00 0.00 2.32
2035 2115 7.114811 CGTCCCAAAATTCTTGTCTTACATTTG 59.885 37.037 0.00 0.00 0.00 2.32
2036 2116 7.926018 GTCCCAAAATTCTTGTCTTACATTTGT 59.074 33.333 0.00 0.00 27.14 2.83
2037 2117 8.141268 TCCCAAAATTCTTGTCTTACATTTGTC 58.859 33.333 0.00 0.00 27.14 3.18
2038 2118 8.143835 CCCAAAATTCTTGTCTTACATTTGTCT 58.856 33.333 0.00 0.00 27.14 3.41
2045 2125 9.569167 TTCTTGTCTTACATTTGTCTAGATACG 57.431 33.333 0.00 0.00 0.00 3.06
2046 2126 8.188799 TCTTGTCTTACATTTGTCTAGATACGG 58.811 37.037 0.00 0.00 0.00 4.02
2047 2127 7.634671 TGTCTTACATTTGTCTAGATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
2048 2128 8.234136 TGTCTTACATTTGTCTAGATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
2049 2129 8.135529 TGTCTTACATTTGTCTAGATACGGATG 58.864 37.037 0.00 0.85 0.00 3.51
2050 2130 8.136165 GTCTTACATTTGTCTAGATACGGATGT 58.864 37.037 13.29 13.29 34.19 3.06
2051 2131 9.346005 TCTTACATTTGTCTAGATACGGATGTA 57.654 33.333 11.94 11.94 32.86 2.29
2103 2183 2.034048 GAAAAAGTTGGGCGGGCCAA 62.034 55.000 29.82 29.82 37.98 4.52
2299 2379 8.721133 TTTAGGGAGATATACATTGCAGTAGA 57.279 34.615 0.00 0.00 0.00 2.59
2340 2420 2.099756 TGCATAGATGTCTCTGACCGTG 59.900 50.000 0.16 0.00 32.66 4.94
2475 2561 0.461339 GAGAAGATTACGGCGGGCAA 60.461 55.000 13.24 2.15 0.00 4.52
2548 2634 4.430765 GCAATGCGCTGCTTGCCT 62.431 61.111 23.40 0.00 41.45 4.75
2549 2635 2.506217 CAATGCGCTGCTTGCCTG 60.506 61.111 9.73 0.00 38.78 4.85
2550 2636 2.674033 AATGCGCTGCTTGCCTGA 60.674 55.556 9.73 0.00 38.78 3.86
2551 2637 2.697761 AATGCGCTGCTTGCCTGAG 61.698 57.895 9.73 0.00 38.78 3.35
2554 2640 2.359107 CGCTGCTTGCCTGAGGAA 60.359 61.111 0.65 0.00 38.78 3.36
2555 2641 1.748122 CGCTGCTTGCCTGAGGAAT 60.748 57.895 0.65 0.00 38.78 3.01
2556 2642 1.310933 CGCTGCTTGCCTGAGGAATT 61.311 55.000 0.65 0.00 38.78 2.17
2557 2643 0.893447 GCTGCTTGCCTGAGGAATTT 59.107 50.000 0.65 0.00 35.15 1.82
2558 2644 2.094675 GCTGCTTGCCTGAGGAATTTA 58.905 47.619 0.65 0.00 35.15 1.40
2559 2645 2.159324 GCTGCTTGCCTGAGGAATTTAC 60.159 50.000 0.65 0.00 35.15 2.01
2560 2646 2.424956 CTGCTTGCCTGAGGAATTTACC 59.575 50.000 0.65 0.00 0.00 2.85
2564 2650 0.107165 GCCTGAGGAATTTACCGCCT 60.107 55.000 0.65 0.00 34.73 5.52
2565 2651 1.140252 GCCTGAGGAATTTACCGCCTA 59.860 52.381 0.65 0.00 34.73 3.93
2566 2652 2.807108 GCCTGAGGAATTTACCGCCTAG 60.807 54.545 0.65 0.00 34.73 3.02
2571 4411 4.141869 TGAGGAATTTACCGCCTAGTAACC 60.142 45.833 0.00 0.00 32.05 2.85
2602 4442 1.133199 TGAGCTGGGTTGGGAAAATGT 60.133 47.619 0.00 0.00 0.00 2.71
2638 4478 2.524569 AAATGTCAAAAACCTGGGCG 57.475 45.000 0.00 0.00 0.00 6.13
2679 4519 1.899437 CTACAAAGCTCCGCCCCTGA 61.899 60.000 0.00 0.00 0.00 3.86
2680 4520 2.180159 TACAAAGCTCCGCCCCTGAC 62.180 60.000 0.00 0.00 0.00 3.51
2685 4525 1.198759 AGCTCCGCCCCTGACTAAAA 61.199 55.000 0.00 0.00 0.00 1.52
2686 4526 1.025113 GCTCCGCCCCTGACTAAAAC 61.025 60.000 0.00 0.00 0.00 2.43
2687 4527 0.739813 CTCCGCCCCTGACTAAAACG 60.740 60.000 0.00 0.00 0.00 3.60
2688 4528 1.004200 CCGCCCCTGACTAAAACGT 60.004 57.895 0.00 0.00 0.00 3.99
2689 4529 1.296056 CCGCCCCTGACTAAAACGTG 61.296 60.000 0.00 0.00 0.00 4.49
2690 4530 0.320073 CGCCCCTGACTAAAACGTGA 60.320 55.000 0.00 0.00 0.00 4.35
2691 4531 1.154197 GCCCCTGACTAAAACGTGAC 58.846 55.000 0.00 0.00 0.00 3.67
2692 4532 1.270678 GCCCCTGACTAAAACGTGACT 60.271 52.381 0.00 0.00 0.00 3.41
2693 4533 2.809299 GCCCCTGACTAAAACGTGACTT 60.809 50.000 0.00 0.00 0.00 3.01
2694 4534 2.806244 CCCCTGACTAAAACGTGACTTG 59.194 50.000 0.00 0.00 0.00 3.16
2695 4535 3.493699 CCCCTGACTAAAACGTGACTTGA 60.494 47.826 0.00 0.00 0.00 3.02
2696 4536 4.315803 CCCTGACTAAAACGTGACTTGAT 58.684 43.478 0.00 0.00 0.00 2.57
2697 4537 5.475719 CCCTGACTAAAACGTGACTTGATA 58.524 41.667 0.00 0.00 0.00 2.15
2698 4538 5.347907 CCCTGACTAAAACGTGACTTGATAC 59.652 44.000 0.00 0.00 0.00 2.24
2699 4539 5.924254 CCTGACTAAAACGTGACTTGATACA 59.076 40.000 0.00 0.00 0.00 2.29
2700 4540 6.590292 CCTGACTAAAACGTGACTTGATACAT 59.410 38.462 0.00 0.00 0.00 2.29
2701 4541 7.201444 CCTGACTAAAACGTGACTTGATACATC 60.201 40.741 0.00 0.00 0.00 3.06
2702 4542 6.588756 TGACTAAAACGTGACTTGATACATCC 59.411 38.462 0.00 0.00 0.00 3.51
2703 4543 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
2704 4544 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
2705 4545 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
2706 4546 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
2707 4547 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
2708 4548 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
2709 4549 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
2710 4550 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
2711 4551 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
2712 4552 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
2713 4553 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
2714 4554 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
2715 4555 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
2716 4556 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
2719 4559 9.825109 TGATACATCCGTATTTAGACAAATTCA 57.175 29.630 0.00 0.00 38.48 2.57
2722 4562 8.786826 ACATCCGTATTTAGACAAATTCAAGA 57.213 30.769 0.00 0.00 35.88 3.02
2723 4563 8.665685 ACATCCGTATTTAGACAAATTCAAGAC 58.334 33.333 0.00 0.00 35.88 3.01
2724 4564 8.664798 CATCCGTATTTAGACAAATTCAAGACA 58.335 33.333 0.00 0.00 35.88 3.41
2725 4565 8.610248 TCCGTATTTAGACAAATTCAAGACAA 57.390 30.769 0.00 0.00 35.88 3.18
2726 4566 8.717821 TCCGTATTTAGACAAATTCAAGACAAG 58.282 33.333 0.00 0.00 35.88 3.16
2727 4567 8.717821 CCGTATTTAGACAAATTCAAGACAAGA 58.282 33.333 0.00 0.00 35.88 3.02
2738 4578 4.829064 TCAAGACAAGAATTTTGGGACG 57.171 40.909 5.68 0.00 0.00 4.79
2739 4579 3.568007 TCAAGACAAGAATTTTGGGACGG 59.432 43.478 0.00 0.00 0.00 4.79
2740 4580 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2741 4581 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2742 4582 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2743 4583 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2744 4584 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2753 4593 1.397672 GGACGGAGGGAGTACTTACC 58.602 60.000 8.99 8.99 0.00 2.85
2900 4740 6.614160 TGACTGCATATTGAAACATGAACAG 58.386 36.000 0.00 0.00 0.00 3.16
3023 4863 9.364653 ACGTCTTATATTAACTTACAGAGGGAT 57.635 33.333 0.00 0.00 0.00 3.85
3092 4932 7.040201 AGCTTCATCTAATTTGCTTGTTTCTGA 60.040 33.333 0.00 0.00 0.00 3.27
3226 5078 5.350640 GTCCTTTCGTGTTATCTGTAAAGGG 59.649 44.000 10.77 0.00 42.02 3.95
3350 5202 4.844998 TTTTTGAAGCATGTGGATTCGA 57.155 36.364 0.00 0.00 44.83 3.71
3360 5212 2.497138 TGTGGATTCGATGATGATGCC 58.503 47.619 0.00 0.00 0.00 4.40
3397 5249 7.133891 ACAATGATGTACACTAGAAACTTGC 57.866 36.000 0.00 0.00 38.24 4.01
3402 5254 4.295870 TGTACACTAGAAACTTGCACGAG 58.704 43.478 0.00 0.00 0.00 4.18
3506 5358 3.190874 GAGAATGCCGACTGTAAAGAGG 58.809 50.000 0.00 0.00 0.00 3.69
3580 5436 0.962855 GCCCCAGCCTTTTCTGTCTC 60.963 60.000 0.00 0.00 32.32 3.36
3591 5447 0.601558 TTCTGTCTCCGAGGAAACCG 59.398 55.000 0.00 0.00 0.00 4.44
3670 5526 7.506599 TCATGTGTGGAAGATGGCATTATTTAT 59.493 33.333 0.00 0.00 30.44 1.40
3671 5527 8.795513 CATGTGTGGAAGATGGCATTATTTATA 58.204 33.333 0.00 0.00 0.00 0.98
3781 5640 1.624487 TTTCGTCGTCATGGATGTCG 58.376 50.000 0.00 0.57 39.92 4.35
3844 5712 6.721571 ACATAAACTGTAGATTTGTGGACG 57.278 37.500 0.00 0.00 35.91 4.79
3872 5741 5.994668 GGTGCTGTCAAATTTTATTGGGAAA 59.005 36.000 0.00 0.00 0.00 3.13
3906 5775 6.048732 TCAAGTTATGTTGCAGGATAGACA 57.951 37.500 0.00 0.00 0.00 3.41
3929 5798 8.133024 ACAACAGCATAAATAAATCAAGGGAA 57.867 30.769 0.00 0.00 0.00 3.97
3973 5842 9.726438 ACTCTATGCAAAAGATTAAACAGTACT 57.274 29.630 0.00 0.00 0.00 2.73
3977 5846 8.863872 ATGCAAAAGATTAAACAGTACTACCT 57.136 30.769 0.00 0.00 0.00 3.08
3978 5847 8.319143 TGCAAAAGATTAAACAGTACTACCTC 57.681 34.615 0.00 0.00 0.00 3.85
3979 5848 7.389607 TGCAAAAGATTAAACAGTACTACCTCC 59.610 37.037 0.00 0.00 0.00 4.30
3980 5849 7.412672 GCAAAAGATTAAACAGTACTACCTCCG 60.413 40.741 0.00 0.00 0.00 4.63
3981 5850 6.847421 AAGATTAAACAGTACTACCTCCGT 57.153 37.500 0.00 0.00 0.00 4.69
3982 5851 6.448207 AGATTAAACAGTACTACCTCCGTC 57.552 41.667 0.00 0.00 0.00 4.79
3983 5852 5.359292 AGATTAAACAGTACTACCTCCGTCC 59.641 44.000 0.00 0.00 0.00 4.79
3984 5853 1.844687 AACAGTACTACCTCCGTCCC 58.155 55.000 0.00 0.00 0.00 4.46
3985 5854 0.700564 ACAGTACTACCTCCGTCCCA 59.299 55.000 0.00 0.00 0.00 4.37
3986 5855 1.287146 ACAGTACTACCTCCGTCCCAT 59.713 52.381 0.00 0.00 0.00 4.00
3987 5856 2.511218 ACAGTACTACCTCCGTCCCATA 59.489 50.000 0.00 0.00 0.00 2.74
3988 5857 3.053395 ACAGTACTACCTCCGTCCCATAA 60.053 47.826 0.00 0.00 0.00 1.90
3989 5858 4.150359 CAGTACTACCTCCGTCCCATAAT 58.850 47.826 0.00 0.00 0.00 1.28
3990 5859 5.163055 ACAGTACTACCTCCGTCCCATAATA 60.163 44.000 0.00 0.00 0.00 0.98
3991 5860 5.950549 CAGTACTACCTCCGTCCCATAATAT 59.049 44.000 0.00 0.00 0.00 1.28
3992 5861 7.114754 CAGTACTACCTCCGTCCCATAATATA 58.885 42.308 0.00 0.00 0.00 0.86
3993 5862 7.613022 CAGTACTACCTCCGTCCCATAATATAA 59.387 40.741 0.00 0.00 0.00 0.98
3994 5863 7.833183 AGTACTACCTCCGTCCCATAATATAAG 59.167 40.741 0.00 0.00 0.00 1.73
3995 5864 6.797707 ACTACCTCCGTCCCATAATATAAGA 58.202 40.000 0.00 0.00 0.00 2.10
3996 5865 6.890814 ACTACCTCCGTCCCATAATATAAGAG 59.109 42.308 0.00 0.00 0.00 2.85
3997 5866 4.466726 ACCTCCGTCCCATAATATAAGAGC 59.533 45.833 0.00 0.00 0.00 4.09
3998 5867 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3999 5868 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4000 5869 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4001 5870 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4002 5871 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4003 5872 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4004 5873 7.385752 CCGTCCCATAATATAAGAGCGTTTTTA 59.614 37.037 0.00 0.00 0.00 1.52
4005 5874 8.767085 CGTCCCATAATATAAGAGCGTTTTTAA 58.233 33.333 0.00 0.00 0.00 1.52
4006 5875 9.874215 GTCCCATAATATAAGAGCGTTTTTAAC 57.126 33.333 0.00 0.00 0.00 2.01
4007 5876 9.616156 TCCCATAATATAAGAGCGTTTTTAACA 57.384 29.630 0.00 0.00 0.00 2.41
4008 5877 9.659830 CCCATAATATAAGAGCGTTTTTAACAC 57.340 33.333 0.00 0.00 0.00 3.32
4011 5880 9.910511 ATAATATAAGAGCGTTTTTAACACACG 57.089 29.630 0.00 0.00 36.98 4.49
4012 5881 5.662211 ATAAGAGCGTTTTTAACACACGT 57.338 34.783 0.00 0.00 36.29 4.49
4013 5882 4.345271 AAGAGCGTTTTTAACACACGTT 57.655 36.364 0.00 0.00 39.24 3.99
4014 5883 3.931824 AGAGCGTTTTTAACACACGTTC 58.068 40.909 8.29 8.29 42.46 3.95
4015 5884 3.619929 AGAGCGTTTTTAACACACGTTCT 59.380 39.130 11.52 11.52 45.88 3.01
4016 5885 4.336932 GAGCGTTTTTAACACACGTTCTT 58.663 39.130 8.82 0.00 39.99 2.52
4017 5886 5.467902 AGCGTTTTTAACACACGTTCTTA 57.532 34.783 0.00 0.00 36.52 2.10
4018 5887 6.051646 AGCGTTTTTAACACACGTTCTTAT 57.948 33.333 0.00 0.00 36.52 1.73
4019 5888 7.176285 AGCGTTTTTAACACACGTTCTTATA 57.824 32.000 0.00 0.00 36.52 0.98
4020 5889 7.799784 AGCGTTTTTAACACACGTTCTTATAT 58.200 30.769 0.00 0.00 36.52 0.86
4021 5890 8.284693 AGCGTTTTTAACACACGTTCTTATATT 58.715 29.630 0.00 0.00 36.52 1.28
4022 5891 9.527566 GCGTTTTTAACACACGTTCTTATATTA 57.472 29.630 0.00 0.00 36.52 0.98
4027 5896 8.665643 TTAACACACGTTCTTATATTATGGGG 57.334 34.615 0.00 0.00 36.52 4.96
4028 5897 5.061179 ACACACGTTCTTATATTATGGGGC 58.939 41.667 0.00 0.00 0.00 5.80
4029 5898 5.060506 CACACGTTCTTATATTATGGGGCA 58.939 41.667 0.00 0.00 0.00 5.36
4030 5899 5.179368 CACACGTTCTTATATTATGGGGCAG 59.821 44.000 0.00 0.00 0.00 4.85
4031 5900 5.071250 ACACGTTCTTATATTATGGGGCAGA 59.929 40.000 0.00 0.00 0.00 4.26
4032 5901 5.639506 CACGTTCTTATATTATGGGGCAGAG 59.360 44.000 0.00 0.00 0.00 3.35
4033 5902 5.542635 ACGTTCTTATATTATGGGGCAGAGA 59.457 40.000 0.00 0.00 0.00 3.10
4034 5903 6.102663 CGTTCTTATATTATGGGGCAGAGAG 58.897 44.000 0.00 0.00 0.00 3.20
4035 5904 6.071334 CGTTCTTATATTATGGGGCAGAGAGA 60.071 42.308 0.00 0.00 0.00 3.10
4036 5905 7.327214 GTTCTTATATTATGGGGCAGAGAGAG 58.673 42.308 0.00 0.00 0.00 3.20
4037 5906 6.565974 TCTTATATTATGGGGCAGAGAGAGT 58.434 40.000 0.00 0.00 0.00 3.24
4038 5907 7.709601 TCTTATATTATGGGGCAGAGAGAGTA 58.290 38.462 0.00 0.00 0.00 2.59
4039 5908 8.177456 TCTTATATTATGGGGCAGAGAGAGTAA 58.823 37.037 0.00 0.00 0.00 2.24
4050 5919 6.162777 GGCAGAGAGAGTAATTGATACATCC 58.837 44.000 0.00 0.00 36.94 3.51
4069 5938 6.913170 ACATCCATGACATTCTGTAAACAAC 58.087 36.000 0.00 0.00 0.00 3.32
4070 5939 6.489700 ACATCCATGACATTCTGTAAACAACA 59.510 34.615 0.00 0.00 36.42 3.33
4218 6099 6.707440 TTCTCTTATCCAACTTTGCACAAA 57.293 33.333 0.00 0.00 0.00 2.83
4260 6147 5.078949 CACCCATGGCTATTAAATGATGGA 58.921 41.667 6.09 0.00 33.52 3.41
4261 6148 5.718130 CACCCATGGCTATTAAATGATGGAT 59.282 40.000 6.09 0.00 33.52 3.41
4262 6149 5.954150 ACCCATGGCTATTAAATGATGGATC 59.046 40.000 6.09 0.00 33.52 3.36
4263 6150 6.192773 CCCATGGCTATTAAATGATGGATCT 58.807 40.000 6.09 0.00 33.52 2.75
4264 6151 6.320672 CCCATGGCTATTAAATGATGGATCTC 59.679 42.308 6.09 0.00 33.52 2.75
4265 6152 6.320672 CCATGGCTATTAAATGATGGATCTCC 59.679 42.308 0.00 0.00 33.52 3.71
4277 6164 3.438216 TGGATCTCCAACAGAAATGCA 57.562 42.857 0.00 0.00 44.35 3.96
4323 6218 3.021695 TCGTTATCCCTGTCGAGACAAT 58.978 45.455 7.38 1.34 41.33 2.71
4342 6237 5.880901 ACAATTGTAGGTCCATCTGTTCTT 58.119 37.500 9.97 0.00 0.00 2.52
4343 6238 6.306987 ACAATTGTAGGTCCATCTGTTCTTT 58.693 36.000 9.97 0.00 0.00 2.52
4344 6239 6.777580 ACAATTGTAGGTCCATCTGTTCTTTT 59.222 34.615 9.97 0.00 0.00 2.27
4345 6240 7.287696 ACAATTGTAGGTCCATCTGTTCTTTTT 59.712 33.333 9.97 0.00 0.00 1.94
4394 6289 1.762419 GCATTTACCAGCATGCATCG 58.238 50.000 21.98 8.82 44.49 3.84
4395 6290 1.066002 GCATTTACCAGCATGCATCGT 59.934 47.619 21.98 14.45 44.49 3.73
4396 6291 2.855953 GCATTTACCAGCATGCATCGTC 60.856 50.000 21.98 0.00 44.49 4.20
4397 6292 2.106477 TTTACCAGCATGCATCGTCA 57.894 45.000 21.98 0.94 31.97 4.35
4398 6293 2.330440 TTACCAGCATGCATCGTCAT 57.670 45.000 21.98 0.00 31.97 3.06
4399 6294 3.467374 TTACCAGCATGCATCGTCATA 57.533 42.857 21.98 0.00 31.97 2.15
4400 6295 1.586422 ACCAGCATGCATCGTCATAC 58.414 50.000 21.98 0.00 31.97 2.39
4401 6296 1.134431 ACCAGCATGCATCGTCATACA 60.134 47.619 21.98 0.00 31.97 2.29
4402 6297 1.529865 CCAGCATGCATCGTCATACAG 59.470 52.381 21.98 0.00 31.97 2.74
4403 6298 1.070108 CAGCATGCATCGTCATACAGC 60.070 52.381 21.98 0.00 0.00 4.40
4404 6299 1.202615 AGCATGCATCGTCATACAGCT 60.203 47.619 21.98 0.00 0.00 4.24
4405 6300 1.070108 GCATGCATCGTCATACAGCTG 60.070 52.381 14.21 13.48 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.662629 CTGCGTCATTAACTGGAGCAG 59.337 52.381 0.10 0.10 43.66 4.24
54 55 3.496130 GCTGCATATTTCTACTGCGTCAT 59.504 43.478 0.00 0.00 38.75 3.06
55 56 2.866156 GCTGCATATTTCTACTGCGTCA 59.134 45.455 0.00 0.00 38.75 4.35
56 57 2.097202 CGCTGCATATTTCTACTGCGTC 60.097 50.000 0.00 0.00 42.92 5.19
57 58 1.860950 CGCTGCATATTTCTACTGCGT 59.139 47.619 0.00 0.00 42.92 5.24
58 59 2.567065 CGCTGCATATTTCTACTGCG 57.433 50.000 0.00 0.00 42.46 5.18
60 61 6.530913 AATGTACGCTGCATATTTCTACTG 57.469 37.500 0.00 0.00 0.00 2.74
61 62 8.548721 GTTTAATGTACGCTGCATATTTCTACT 58.451 33.333 0.00 0.00 0.00 2.57
62 63 7.797123 GGTTTAATGTACGCTGCATATTTCTAC 59.203 37.037 0.00 0.00 0.00 2.59
63 64 7.496263 TGGTTTAATGTACGCTGCATATTTCTA 59.504 33.333 0.00 0.00 0.00 2.10
105 106 9.846248 GATATGCTTAATCGCTTATCCATTTTT 57.154 29.630 9.65 0.00 39.35 1.94
109 110 6.259608 GCAGATATGCTTAATCGCTTATCCAT 59.740 38.462 4.74 0.00 42.99 3.41
147 148 4.611366 GTGAATACGTTGTTTGTTAGCTGC 59.389 41.667 0.00 0.00 0.00 5.25
154 155 4.576873 TGGTCATGTGAATACGTTGTTTGT 59.423 37.500 0.00 0.00 0.00 2.83
162 163 4.000325 TCCAGTTTGGTCATGTGAATACG 59.000 43.478 0.00 0.00 39.03 3.06
232 233 1.303074 GGAAAACACGGGGGACTCC 60.303 63.158 0.00 0.00 0.00 3.85
304 306 1.816074 GGCAGGTTGTTCCGTGATAA 58.184 50.000 0.00 0.00 41.99 1.75
317 319 2.293318 TGGATCTCTTGCGGCAGGT 61.293 57.895 12.05 0.00 0.00 4.00
376 378 1.950909 GATCTCGGTACCTCTCCTGTG 59.049 57.143 10.90 0.00 0.00 3.66
377 379 1.475392 CGATCTCGGTACCTCTCCTGT 60.475 57.143 10.90 0.00 35.37 4.00
401 403 0.587489 GCTGCTCGTTAATGAAGCGC 60.587 55.000 0.00 0.00 0.00 5.92
409 411 1.214589 GGAGTCGGCTGCTCGTTAA 59.785 57.895 0.00 0.00 34.00 2.01
410 412 2.707849 GGGAGTCGGCTGCTCGTTA 61.708 63.158 8.88 0.00 34.00 3.18
455 458 2.476126 TTTTCCCCTCGCGTTTGATA 57.524 45.000 5.77 0.00 0.00 2.15
470 473 4.564769 TCCAAATCCGCGCAAAATATTTTC 59.435 37.500 10.53 5.59 0.00 2.29
542 552 2.612000 TCTTCGAACCCTTGGACCTTA 58.388 47.619 0.00 0.00 0.00 2.69
639 650 0.591741 CGCCGAGATTGGTCTACGAC 60.592 60.000 0.00 0.00 33.97 4.34
675 686 1.678300 GACGTCGTCCTCTTCCCCT 60.678 63.158 14.60 0.00 0.00 4.79
678 689 1.580845 TTCCGACGTCGTCCTCTTCC 61.581 60.000 33.49 0.00 37.74 3.46
679 690 0.450983 ATTCCGACGTCGTCCTCTTC 59.549 55.000 33.49 0.00 37.74 2.87
680 691 0.886563 AATTCCGACGTCGTCCTCTT 59.113 50.000 33.49 17.41 37.74 2.85
681 692 0.170561 CAATTCCGACGTCGTCCTCT 59.829 55.000 33.49 13.27 37.74 3.69
682 693 0.801067 CCAATTCCGACGTCGTCCTC 60.801 60.000 33.49 0.00 37.74 3.71
683 694 1.214589 CCAATTCCGACGTCGTCCT 59.785 57.895 33.49 16.21 37.74 3.85
852 906 1.303236 TGTGGTTCTCAATGGGCCG 60.303 57.895 0.00 0.00 0.00 6.13
861 915 3.712881 GGCGTGCGTGTGGTTCTC 61.713 66.667 0.00 0.00 0.00 2.87
969 1029 1.289380 GAGTGAGTGGTCGTGGTCC 59.711 63.158 0.00 0.00 0.00 4.46
1051 1111 2.125673 CGGTGTCGGCGAGGATTT 60.126 61.111 11.20 0.00 0.00 2.17
1052 1112 3.064987 CTCGGTGTCGGCGAGGATT 62.065 63.158 11.20 0.00 36.95 3.01
1053 1113 3.518998 CTCGGTGTCGGCGAGGAT 61.519 66.667 11.20 0.00 36.95 3.24
1483 1543 4.217118 ACTGGCAATTCTACAAGCAAGAAG 59.783 41.667 0.00 0.00 36.46 2.85
1484 1544 4.022935 CACTGGCAATTCTACAAGCAAGAA 60.023 41.667 0.00 0.00 37.38 2.52
1485 1545 3.503363 CACTGGCAATTCTACAAGCAAGA 59.497 43.478 0.00 0.00 32.41 3.02
1486 1546 3.503363 TCACTGGCAATTCTACAAGCAAG 59.497 43.478 0.00 0.00 34.23 4.01
1488 1548 3.076621 CTCACTGGCAATTCTACAAGCA 58.923 45.455 0.00 0.00 0.00 3.91
1489 1549 2.421424 CCTCACTGGCAATTCTACAAGC 59.579 50.000 0.00 0.00 0.00 4.01
1502 1562 1.813513 AATCAAGAACGCCTCACTGG 58.186 50.000 0.00 0.00 39.35 4.00
1503 1563 3.904136 AAAATCAAGAACGCCTCACTG 57.096 42.857 0.00 0.00 0.00 3.66
1504 1564 4.385825 TGTAAAATCAAGAACGCCTCACT 58.614 39.130 0.00 0.00 0.00 3.41
1505 1565 4.213482 ACTGTAAAATCAAGAACGCCTCAC 59.787 41.667 0.00 0.00 0.00 3.51
1506 1566 4.213270 CACTGTAAAATCAAGAACGCCTCA 59.787 41.667 0.00 0.00 0.00 3.86
1507 1567 4.378459 CCACTGTAAAATCAAGAACGCCTC 60.378 45.833 0.00 0.00 0.00 4.70
1508 1568 3.502211 CCACTGTAAAATCAAGAACGCCT 59.498 43.478 0.00 0.00 0.00 5.52
1509 1569 3.821841 CCACTGTAAAATCAAGAACGCC 58.178 45.455 0.00 0.00 0.00 5.68
1510 1570 3.234386 GCCACTGTAAAATCAAGAACGC 58.766 45.455 0.00 0.00 0.00 4.84
1511 1571 4.481930 TGCCACTGTAAAATCAAGAACG 57.518 40.909 0.00 0.00 0.00 3.95
1512 1572 5.173131 CGTTTGCCACTGTAAAATCAAGAAC 59.827 40.000 0.00 0.00 0.00 3.01
1513 1573 5.277825 CGTTTGCCACTGTAAAATCAAGAA 58.722 37.500 0.00 0.00 0.00 2.52
1514 1574 4.261405 CCGTTTGCCACTGTAAAATCAAGA 60.261 41.667 0.00 0.00 0.00 3.02
1515 1575 3.980775 CCGTTTGCCACTGTAAAATCAAG 59.019 43.478 0.00 0.00 0.00 3.02
1516 1576 3.797184 GCCGTTTGCCACTGTAAAATCAA 60.797 43.478 0.00 0.00 0.00 2.57
1517 1577 2.287909 GCCGTTTGCCACTGTAAAATCA 60.288 45.455 0.00 0.00 0.00 2.57
1518 1578 2.324860 GCCGTTTGCCACTGTAAAATC 58.675 47.619 0.00 0.00 0.00 2.17
1519 1579 1.335506 CGCCGTTTGCCACTGTAAAAT 60.336 47.619 0.00 0.00 36.24 1.82
1520 1580 0.029567 CGCCGTTTGCCACTGTAAAA 59.970 50.000 0.00 0.00 36.24 1.52
1521 1581 1.096386 ACGCCGTTTGCCACTGTAAA 61.096 50.000 0.00 0.00 36.24 2.01
1522 1582 1.524165 ACGCCGTTTGCCACTGTAA 60.524 52.632 0.00 0.00 36.24 2.41
1523 1583 2.109387 ACGCCGTTTGCCACTGTA 59.891 55.556 0.00 0.00 36.24 2.74
1524 1584 3.582120 CACGCCGTTTGCCACTGT 61.582 61.111 0.00 0.00 36.24 3.55
1529 1589 2.354188 GGTTTCACGCCGTTTGCC 60.354 61.111 0.00 0.00 36.24 4.52
1532 1592 0.031449 CCATTGGTTTCACGCCGTTT 59.969 50.000 0.00 0.00 0.00 3.60
1536 1596 2.477189 CGATAACCATTGGTTTCACGCC 60.477 50.000 25.34 8.43 44.33 5.68
1540 1600 3.013921 GGAGCGATAACCATTGGTTTCA 58.986 45.455 25.34 9.84 44.33 2.69
1560 1620 2.174107 CATGAACACACGCGCTGG 59.826 61.111 5.73 0.00 0.00 4.85
1561 1621 1.840630 TTCCATGAACACACGCGCTG 61.841 55.000 5.73 6.58 0.00 5.18
1567 1627 5.934625 ACTGAAGATAGTTCCATGAACACAC 59.065 40.000 9.42 0.89 44.11 3.82
1597 1657 1.629861 TGCACTGATGGATGAACCTGA 59.370 47.619 0.00 0.00 39.86 3.86
1999 2079 4.717280 AGAATTTTGGGACGGAGAGAGTAT 59.283 41.667 0.00 0.00 0.00 2.12
2000 2080 4.094476 AGAATTTTGGGACGGAGAGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
2001 2081 2.907042 AGAATTTTGGGACGGAGAGAGT 59.093 45.455 0.00 0.00 0.00 3.24
2002 2082 3.618690 AGAATTTTGGGACGGAGAGAG 57.381 47.619 0.00 0.00 0.00 3.20
2003 2083 3.072476 ACAAGAATTTTGGGACGGAGAGA 59.928 43.478 0.00 0.00 0.00 3.10
2004 2084 3.412386 ACAAGAATTTTGGGACGGAGAG 58.588 45.455 0.00 0.00 0.00 3.20
2005 2085 3.072476 AGACAAGAATTTTGGGACGGAGA 59.928 43.478 0.00 0.00 0.00 3.71
2006 2086 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2007 2087 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2008 2088 4.517453 TGTAAGACAAGAATTTTGGGACGG 59.483 41.667 0.00 0.00 0.00 4.79
2009 2089 5.682943 TGTAAGACAAGAATTTTGGGACG 57.317 39.130 5.68 0.00 0.00 4.79
2010 2090 7.926018 ACAAATGTAAGACAAGAATTTTGGGAC 59.074 33.333 7.26 0.00 31.16 4.46
2011 2091 8.017418 ACAAATGTAAGACAAGAATTTTGGGA 57.983 30.769 7.26 0.00 31.16 4.37
2012 2092 8.143835 AGACAAATGTAAGACAAGAATTTTGGG 58.856 33.333 7.26 0.00 31.16 4.12
2019 2099 9.569167 CGTATCTAGACAAATGTAAGACAAGAA 57.431 33.333 0.00 0.00 0.00 2.52
2020 2100 8.188799 CCGTATCTAGACAAATGTAAGACAAGA 58.811 37.037 0.00 0.00 0.00 3.02
2021 2101 8.188799 TCCGTATCTAGACAAATGTAAGACAAG 58.811 37.037 0.00 0.00 0.00 3.16
2022 2102 8.058667 TCCGTATCTAGACAAATGTAAGACAA 57.941 34.615 0.00 0.00 0.00 3.18
2023 2103 7.634671 TCCGTATCTAGACAAATGTAAGACA 57.365 36.000 0.00 0.00 0.00 3.41
2024 2104 8.136165 ACATCCGTATCTAGACAAATGTAAGAC 58.864 37.037 0.00 0.00 0.00 3.01
2025 2105 8.234136 ACATCCGTATCTAGACAAATGTAAGA 57.766 34.615 0.00 1.82 0.00 2.10
2043 2123 8.921205 ACTGGTTTTAGTATTAGATACATCCGT 58.079 33.333 1.42 0.00 38.21 4.69
2044 2124 9.193133 CACTGGTTTTAGTATTAGATACATCCG 57.807 37.037 1.42 0.00 38.21 4.18
2045 2125 9.490379 CCACTGGTTTTAGTATTAGATACATCC 57.510 37.037 1.42 0.00 38.21 3.51
2046 2126 8.989980 GCCACTGGTTTTAGTATTAGATACATC 58.010 37.037 0.00 0.00 38.21 3.06
2047 2127 7.656137 CGCCACTGGTTTTAGTATTAGATACAT 59.344 37.037 0.00 0.00 38.21 2.29
2048 2128 6.982141 CGCCACTGGTTTTAGTATTAGATACA 59.018 38.462 0.00 0.00 38.21 2.29
2049 2129 6.423001 CCGCCACTGGTTTTAGTATTAGATAC 59.577 42.308 0.00 0.00 35.99 2.24
2050 2130 6.324512 TCCGCCACTGGTTTTAGTATTAGATA 59.675 38.462 0.00 0.00 0.00 1.98
2051 2131 5.129815 TCCGCCACTGGTTTTAGTATTAGAT 59.870 40.000 0.00 0.00 0.00 1.98
2052 2132 4.467082 TCCGCCACTGGTTTTAGTATTAGA 59.533 41.667 0.00 0.00 0.00 2.10
2053 2133 4.761975 TCCGCCACTGGTTTTAGTATTAG 58.238 43.478 0.00 0.00 0.00 1.73
2054 2134 4.761975 CTCCGCCACTGGTTTTAGTATTA 58.238 43.478 0.00 0.00 0.00 0.98
2055 2135 3.606687 CTCCGCCACTGGTTTTAGTATT 58.393 45.455 0.00 0.00 0.00 1.89
2056 2136 2.679930 GCTCCGCCACTGGTTTTAGTAT 60.680 50.000 0.00 0.00 0.00 2.12
2057 2137 1.338389 GCTCCGCCACTGGTTTTAGTA 60.338 52.381 0.00 0.00 0.00 1.82
2058 2138 0.605589 GCTCCGCCACTGGTTTTAGT 60.606 55.000 0.00 0.00 0.00 2.24
2059 2139 0.321653 AGCTCCGCCACTGGTTTTAG 60.322 55.000 0.00 0.00 0.00 1.85
2060 2140 0.109723 AAGCTCCGCCACTGGTTTTA 59.890 50.000 0.00 0.00 0.00 1.52
2061 2141 1.152756 AAGCTCCGCCACTGGTTTT 60.153 52.632 0.00 0.00 0.00 2.43
2062 2142 1.898574 CAAGCTCCGCCACTGGTTT 60.899 57.895 0.00 0.00 0.00 3.27
2063 2143 2.281761 CAAGCTCCGCCACTGGTT 60.282 61.111 0.00 0.00 0.00 3.67
2191 2271 7.147828 TGGTACAATTGATTTGGTCTTTTCACA 60.148 33.333 13.59 0.00 39.80 3.58
2194 2274 7.206687 TGTGGTACAATTGATTTGGTCTTTTC 58.793 34.615 13.59 0.00 44.16 2.29
2269 2349 9.376075 CTGCAATGTATATCTCCCTAAATACTG 57.624 37.037 0.00 0.00 0.00 2.74
2277 2357 6.318913 AGTCTACTGCAATGTATATCTCCCT 58.681 40.000 0.00 0.00 0.00 4.20
2299 2379 2.430244 CGCCACGTTCGTGCTAGT 60.430 61.111 18.14 0.00 35.03 2.57
2340 2420 1.286501 CACAAATGCATGCATCAGCC 58.713 50.000 32.25 0.00 41.13 4.85
2421 2501 7.454260 AAAAAGTAATCTTCTCGCCTTGATT 57.546 32.000 0.00 0.00 32.90 2.57
2447 2527 3.561725 GCCGTAATCTTCTCCCAATTCAG 59.438 47.826 0.00 0.00 0.00 3.02
2448 2528 3.541632 GCCGTAATCTTCTCCCAATTCA 58.458 45.455 0.00 0.00 0.00 2.57
2449 2529 2.544267 CGCCGTAATCTTCTCCCAATTC 59.456 50.000 0.00 0.00 0.00 2.17
2450 2530 2.561569 CGCCGTAATCTTCTCCCAATT 58.438 47.619 0.00 0.00 0.00 2.32
2452 2532 0.177141 CCGCCGTAATCTTCTCCCAA 59.823 55.000 0.00 0.00 0.00 4.12
2453 2533 1.682451 CCCGCCGTAATCTTCTCCCA 61.682 60.000 0.00 0.00 0.00 4.37
2508 2594 2.347731 CAAACTCTCCCCGTCTTAAGC 58.652 52.381 0.00 0.00 0.00 3.09
2544 2630 0.393808 GGCGGTAAATTCCTCAGGCA 60.394 55.000 0.00 0.00 0.00 4.75
2545 2631 0.107165 AGGCGGTAAATTCCTCAGGC 60.107 55.000 0.00 0.00 0.00 4.85
2546 2632 2.434702 ACTAGGCGGTAAATTCCTCAGG 59.565 50.000 0.00 0.00 0.00 3.86
2547 2633 3.821421 ACTAGGCGGTAAATTCCTCAG 57.179 47.619 0.00 0.00 0.00 3.35
2548 2634 4.141869 GGTTACTAGGCGGTAAATTCCTCA 60.142 45.833 7.46 0.00 34.11 3.86
2549 2635 4.375272 GGTTACTAGGCGGTAAATTCCTC 58.625 47.826 7.46 0.00 34.11 3.71
2550 2636 3.181472 CGGTTACTAGGCGGTAAATTCCT 60.181 47.826 7.46 0.00 34.11 3.36
2551 2637 3.126073 CGGTTACTAGGCGGTAAATTCC 58.874 50.000 7.46 5.18 34.11 3.01
2552 2638 4.045636 TCGGTTACTAGGCGGTAAATTC 57.954 45.455 7.46 2.20 34.11 2.17
2553 2639 4.081476 ACTTCGGTTACTAGGCGGTAAATT 60.081 41.667 7.46 0.00 34.11 1.82
2554 2640 3.448660 ACTTCGGTTACTAGGCGGTAAAT 59.551 43.478 7.46 0.00 34.11 1.40
2555 2641 2.825532 ACTTCGGTTACTAGGCGGTAAA 59.174 45.455 7.46 0.00 34.11 2.01
2556 2642 2.446435 ACTTCGGTTACTAGGCGGTAA 58.554 47.619 0.00 2.85 0.00 2.85
2557 2643 2.128771 ACTTCGGTTACTAGGCGGTA 57.871 50.000 0.00 0.00 0.00 4.02
2558 2644 1.745653 GTACTTCGGTTACTAGGCGGT 59.254 52.381 0.00 0.00 0.00 5.68
2559 2645 1.745087 TGTACTTCGGTTACTAGGCGG 59.255 52.381 0.00 0.00 0.00 6.13
2560 2646 3.492421 TTGTACTTCGGTTACTAGGCG 57.508 47.619 0.00 0.00 0.00 5.52
2564 2650 6.097356 CAGCTCAATTGTACTTCGGTTACTA 58.903 40.000 5.13 0.00 0.00 1.82
2565 2651 4.929808 CAGCTCAATTGTACTTCGGTTACT 59.070 41.667 5.13 0.00 0.00 2.24
2566 2652 4.092968 CCAGCTCAATTGTACTTCGGTTAC 59.907 45.833 5.13 0.00 0.00 2.50
2571 4411 2.699954 ACCCAGCTCAATTGTACTTCG 58.300 47.619 5.13 0.00 0.00 3.79
2679 4519 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
2680 4520 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
2685 4525 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
2686 4526 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
2687 4527 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
2688 4528 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
2689 4529 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
2690 4530 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
2693 4533 9.825109 TGAATTTGTCTAAATACGGATGTATCA 57.175 29.630 0.00 0.00 40.42 2.15
2696 4536 9.878667 TCTTGAATTTGTCTAAATACGGATGTA 57.121 29.630 0.00 0.00 35.50 2.29
2697 4537 8.665685 GTCTTGAATTTGTCTAAATACGGATGT 58.334 33.333 0.00 0.00 35.50 3.06
2698 4538 8.664798 TGTCTTGAATTTGTCTAAATACGGATG 58.335 33.333 0.00 0.00 35.50 3.51
2699 4539 8.786826 TGTCTTGAATTTGTCTAAATACGGAT 57.213 30.769 0.00 0.00 35.50 4.18
2700 4540 8.610248 TTGTCTTGAATTTGTCTAAATACGGA 57.390 30.769 0.00 0.00 35.50 4.69
2701 4541 8.717821 TCTTGTCTTGAATTTGTCTAAATACGG 58.282 33.333 0.00 0.00 35.50 4.02
2708 4548 9.748708 CCAAAATTCTTGTCTTGAATTTGTCTA 57.251 29.630 13.02 0.00 46.81 2.59
2709 4549 7.712205 CCCAAAATTCTTGTCTTGAATTTGTCT 59.288 33.333 13.02 0.00 46.81 3.41
2710 4550 7.710475 TCCCAAAATTCTTGTCTTGAATTTGTC 59.290 33.333 13.02 0.00 46.81 3.18
2711 4551 7.495606 GTCCCAAAATTCTTGTCTTGAATTTGT 59.504 33.333 13.02 4.15 46.81 2.83
2712 4552 7.306749 CGTCCCAAAATTCTTGTCTTGAATTTG 60.307 37.037 13.02 8.67 46.81 2.32
2714 4554 6.215845 CGTCCCAAAATTCTTGTCTTGAATT 58.784 36.000 0.00 0.00 43.44 2.17
2715 4555 5.278957 CCGTCCCAAAATTCTTGTCTTGAAT 60.279 40.000 0.00 0.00 35.88 2.57
2716 4556 4.037446 CCGTCCCAAAATTCTTGTCTTGAA 59.963 41.667 0.00 0.00 0.00 2.69
2717 4557 3.568007 CCGTCCCAAAATTCTTGTCTTGA 59.432 43.478 0.00 0.00 0.00 3.02
2718 4558 3.568007 TCCGTCCCAAAATTCTTGTCTTG 59.432 43.478 0.00 0.00 0.00 3.02
2719 4559 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2720 4560 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2721 4561 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2722 4562 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2723 4563 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2724 4564 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2725 4565 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2726 4566 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2727 4567 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2728 4568 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2729 4569 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2730 4570 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2731 4571 0.115745 AAGTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
2732 4572 1.002069 TAAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
2733 4573 1.397672 GTAAGTACTCCCTCCGTCCC 58.602 60.000 0.00 0.00 0.00 4.46
2734 4574 1.064091 AGGTAAGTACTCCCTCCGTCC 60.064 57.143 7.99 0.00 0.00 4.79
2735 4575 2.022934 CAGGTAAGTACTCCCTCCGTC 58.977 57.143 10.38 0.00 0.00 4.79
2736 4576 1.341778 CCAGGTAAGTACTCCCTCCGT 60.342 57.143 10.38 0.00 0.00 4.69
2737 4577 1.064166 TCCAGGTAAGTACTCCCTCCG 60.064 57.143 10.38 5.37 0.00 4.63
2738 4578 2.292061 TGTCCAGGTAAGTACTCCCTCC 60.292 54.545 10.38 4.73 0.00 4.30
2739 4579 3.025262 CTGTCCAGGTAAGTACTCCCTC 58.975 54.545 10.38 2.58 0.00 4.30
2740 4580 2.292323 CCTGTCCAGGTAAGTACTCCCT 60.292 54.545 7.99 7.99 43.61 4.20
2741 4581 2.108970 CCTGTCCAGGTAAGTACTCCC 58.891 57.143 5.11 0.00 43.61 4.30
2753 4593 2.930040 CGTGCTAATGTTACCTGTCCAG 59.070 50.000 0.00 0.00 0.00 3.86
2761 4601 3.058501 ACAAACAGCCGTGCTAATGTTAC 60.059 43.478 0.00 0.00 36.40 2.50
2770 4610 1.897398 CTACCGACAAACAGCCGTGC 61.897 60.000 0.00 0.00 0.00 5.34
2900 4740 5.446143 AGTCGATCCAGAGATACATTCAC 57.554 43.478 0.00 0.00 30.90 3.18
3015 4855 9.136323 AGCACCTTTTAAAATATAATCCCTCTG 57.864 33.333 0.09 0.00 0.00 3.35
3092 4932 3.519913 GGAGTACCCTGGAGAGATTGTTT 59.480 47.826 0.00 0.00 0.00 2.83
3226 5078 1.757699 AGAAGTAGATCACCGCTTCCC 59.242 52.381 12.01 0.00 38.37 3.97
3350 5202 2.741433 GCACCCATGGCATCATCAT 58.259 52.632 6.09 0.00 0.00 2.45
3360 5212 0.967662 TCATTGTTGTGGCACCCATG 59.032 50.000 16.26 11.45 35.28 3.66
3397 5249 4.240888 CATCCATAGGAATGCTACTCGTG 58.759 47.826 0.00 0.00 34.34 4.35
3402 5254 4.074970 CCAACCATCCATAGGAATGCTAC 58.925 47.826 0.00 0.00 34.34 3.58
3526 5379 4.682589 CGGATCCAGTTAGAGGGGTAAAAC 60.683 50.000 13.41 0.00 0.00 2.43
3591 5447 6.967199 CACAAGTTTCTCTAATTTATTCGGCC 59.033 38.462 0.00 0.00 0.00 6.13
3592 5448 6.967199 CCACAAGTTTCTCTAATTTATTCGGC 59.033 38.462 0.00 0.00 0.00 5.54
3631 5487 6.573664 TCCACACATGATAAAAAGGTGAAG 57.426 37.500 0.00 0.00 33.82 3.02
3670 5526 2.158957 GGTCCGGATTCTGAACATGCTA 60.159 50.000 7.81 0.00 0.00 3.49
3671 5527 1.407437 GGTCCGGATTCTGAACATGCT 60.407 52.381 7.81 0.00 0.00 3.79
3724 5580 9.950680 AAACATTTATCTCTGTAAACACACAAG 57.049 29.630 0.00 0.00 0.00 3.16
3725 5581 9.729023 CAAACATTTATCTCTGTAAACACACAA 57.271 29.630 0.00 0.00 0.00 3.33
3726 5582 8.898761 ACAAACATTTATCTCTGTAAACACACA 58.101 29.630 0.00 0.00 0.00 3.72
3765 5624 2.230940 GCCGACATCCATGACGACG 61.231 63.158 12.09 0.00 45.97 5.12
3781 5640 2.618241 TGTGATTCACTCTTTGTGTGCC 59.382 45.455 17.26 0.00 46.27 5.01
3824 5692 5.217978 ACCGTCCACAAATCTACAGTTTA 57.782 39.130 0.00 0.00 0.00 2.01
3844 5712 5.179182 CCAATAAAATTTGACAGCACCAACC 59.821 40.000 0.00 0.00 0.00 3.77
3872 5741 7.669427 TGCAACATAACTTGATGAAGGAAAAT 58.331 30.769 0.00 0.00 32.95 1.82
3906 5775 9.603921 CATTTCCCTTGATTTATTTATGCTGTT 57.396 29.630 0.00 0.00 0.00 3.16
3929 5798 2.749621 GAGTTGAAATCCTGCGGACATT 59.250 45.455 0.00 0.00 32.98 2.71
3972 5841 6.183360 GCTCTTATATTATGGGACGGAGGTAG 60.183 46.154 0.00 0.00 0.00 3.18
3973 5842 5.655532 GCTCTTATATTATGGGACGGAGGTA 59.344 44.000 0.00 0.00 0.00 3.08
3974 5843 4.466726 GCTCTTATATTATGGGACGGAGGT 59.533 45.833 0.00 0.00 0.00 3.85
3975 5844 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3976 5845 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3977 5846 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3978 5847 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3979 5848 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3980 5849 9.874215 GTTAAAAACGCTCTTATATTATGGGAC 57.126 33.333 0.00 0.00 0.00 4.46
3981 5850 9.616156 TGTTAAAAACGCTCTTATATTATGGGA 57.384 29.630 0.00 0.00 0.00 4.37
3982 5851 9.659830 GTGTTAAAAACGCTCTTATATTATGGG 57.340 33.333 0.00 0.00 38.81 4.00
3985 5854 9.910511 CGTGTGTTAAAAACGCTCTTATATTAT 57.089 29.630 5.10 0.00 42.27 1.28
3986 5855 8.924691 ACGTGTGTTAAAAACGCTCTTATATTA 58.075 29.630 5.10 0.00 42.27 0.98
3987 5856 7.799784 ACGTGTGTTAAAAACGCTCTTATATT 58.200 30.769 5.10 0.00 42.27 1.28
3988 5857 7.355332 ACGTGTGTTAAAAACGCTCTTATAT 57.645 32.000 5.10 0.00 42.27 0.86
3989 5858 6.768029 ACGTGTGTTAAAAACGCTCTTATA 57.232 33.333 5.10 0.00 42.27 0.98
3990 5859 5.662211 ACGTGTGTTAAAAACGCTCTTAT 57.338 34.783 5.10 0.00 42.27 1.73
3991 5860 5.291614 AGAACGTGTGTTAAAAACGCTCTTA 59.708 36.000 0.00 0.00 39.07 2.10
3992 5861 4.093850 AGAACGTGTGTTAAAAACGCTCTT 59.906 37.500 0.00 0.00 39.07 2.85
3993 5862 3.619929 AGAACGTGTGTTAAAAACGCTCT 59.380 39.130 0.00 6.13 42.27 4.09
3994 5863 3.931824 AGAACGTGTGTTAAAAACGCTC 58.068 40.909 0.00 4.20 42.27 5.03
3995 5864 4.345271 AAGAACGTGTGTTAAAAACGCT 57.655 36.364 0.00 0.00 42.27 5.07
3996 5865 7.998081 ATATAAGAACGTGTGTTAAAAACGC 57.002 32.000 0.00 0.00 40.90 4.84
4001 5870 9.111613 CCCCATAATATAAGAACGTGTGTTAAA 57.888 33.333 0.00 0.00 38.78 1.52
4002 5871 7.227116 GCCCCATAATATAAGAACGTGTGTTAA 59.773 37.037 0.00 0.00 38.78 2.01
4003 5872 6.707161 GCCCCATAATATAAGAACGTGTGTTA 59.293 38.462 0.00 0.00 38.78 2.41
4004 5873 5.529800 GCCCCATAATATAAGAACGTGTGTT 59.470 40.000 0.00 0.00 42.23 3.32
4005 5874 5.061179 GCCCCATAATATAAGAACGTGTGT 58.939 41.667 0.00 0.00 0.00 3.72
4006 5875 5.060506 TGCCCCATAATATAAGAACGTGTG 58.939 41.667 0.00 0.00 0.00 3.82
4007 5876 5.071250 TCTGCCCCATAATATAAGAACGTGT 59.929 40.000 0.00 0.00 0.00 4.49
4008 5877 5.547465 TCTGCCCCATAATATAAGAACGTG 58.453 41.667 0.00 0.00 0.00 4.49
4009 5878 5.542635 TCTCTGCCCCATAATATAAGAACGT 59.457 40.000 0.00 0.00 0.00 3.99
4010 5879 6.037786 TCTCTGCCCCATAATATAAGAACG 57.962 41.667 0.00 0.00 0.00 3.95
4011 5880 7.038658 ACTCTCTCTGCCCCATAATATAAGAAC 60.039 40.741 0.00 0.00 0.00 3.01
4012 5881 7.019388 ACTCTCTCTGCCCCATAATATAAGAA 58.981 38.462 0.00 0.00 0.00 2.52
4013 5882 6.565974 ACTCTCTCTGCCCCATAATATAAGA 58.434 40.000 0.00 0.00 0.00 2.10
4014 5883 6.865834 ACTCTCTCTGCCCCATAATATAAG 57.134 41.667 0.00 0.00 0.00 1.73
4015 5884 8.917414 ATTACTCTCTCTGCCCCATAATATAA 57.083 34.615 0.00 0.00 0.00 0.98
4016 5885 8.762645 CAATTACTCTCTCTGCCCCATAATATA 58.237 37.037 0.00 0.00 0.00 0.86
4017 5886 7.459125 TCAATTACTCTCTCTGCCCCATAATAT 59.541 37.037 0.00 0.00 0.00 1.28
4018 5887 6.787458 TCAATTACTCTCTCTGCCCCATAATA 59.213 38.462 0.00 0.00 0.00 0.98
4019 5888 5.608437 TCAATTACTCTCTCTGCCCCATAAT 59.392 40.000 0.00 0.00 0.00 1.28
4020 5889 4.968719 TCAATTACTCTCTCTGCCCCATAA 59.031 41.667 0.00 0.00 0.00 1.90
4021 5890 4.556697 TCAATTACTCTCTCTGCCCCATA 58.443 43.478 0.00 0.00 0.00 2.74
4022 5891 3.387962 TCAATTACTCTCTCTGCCCCAT 58.612 45.455 0.00 0.00 0.00 4.00
4023 5892 2.832838 TCAATTACTCTCTCTGCCCCA 58.167 47.619 0.00 0.00 0.00 4.96
4024 5893 4.345257 TGTATCAATTACTCTCTCTGCCCC 59.655 45.833 0.00 0.00 0.00 5.80
4025 5894 5.537300 TGTATCAATTACTCTCTCTGCCC 57.463 43.478 0.00 0.00 0.00 5.36
4026 5895 6.162777 GGATGTATCAATTACTCTCTCTGCC 58.837 44.000 0.00 0.00 0.00 4.85
4027 5896 6.753180 TGGATGTATCAATTACTCTCTCTGC 58.247 40.000 0.00 0.00 0.00 4.26
4028 5897 8.583296 TCATGGATGTATCAATTACTCTCTCTG 58.417 37.037 0.00 0.00 0.00 3.35
4029 5898 8.584157 GTCATGGATGTATCAATTACTCTCTCT 58.416 37.037 0.00 0.00 0.00 3.10
4030 5899 8.363390 TGTCATGGATGTATCAATTACTCTCTC 58.637 37.037 0.00 0.00 0.00 3.20
4031 5900 8.255111 TGTCATGGATGTATCAATTACTCTCT 57.745 34.615 0.00 0.00 0.00 3.10
4032 5901 9.499479 AATGTCATGGATGTATCAATTACTCTC 57.501 33.333 0.00 0.00 0.00 3.20
4033 5902 9.499479 GAATGTCATGGATGTATCAATTACTCT 57.501 33.333 0.00 0.00 0.00 3.24
4034 5903 9.499479 AGAATGTCATGGATGTATCAATTACTC 57.501 33.333 0.00 0.00 0.00 2.59
4035 5904 9.281371 CAGAATGTCATGGATGTATCAATTACT 57.719 33.333 0.00 0.00 0.00 2.24
4069 5938 2.457366 AGACGTAGAGCAAAGGGTTG 57.543 50.000 0.00 0.00 37.83 3.77
4070 5939 2.233186 GGTAGACGTAGAGCAAAGGGTT 59.767 50.000 0.00 0.00 0.00 4.11
4218 6099 6.588204 TGGGTGTTTATATACGATGAAGCTT 58.412 36.000 0.00 0.00 0.00 3.74
4227 6114 8.780846 TTAATAGCCATGGGTGTTTATATACG 57.219 34.615 27.74 0.00 0.00 3.06
4260 6147 4.643784 GGAGATTGCATTTCTGTTGGAGAT 59.356 41.667 4.53 0.00 0.00 2.75
4261 6148 4.012374 GGAGATTGCATTTCTGTTGGAGA 58.988 43.478 4.53 0.00 0.00 3.71
4262 6149 3.760151 TGGAGATTGCATTTCTGTTGGAG 59.240 43.478 4.53 0.00 0.00 3.86
4263 6150 3.765381 TGGAGATTGCATTTCTGTTGGA 58.235 40.909 4.53 0.00 0.00 3.53
4264 6151 4.524316 TTGGAGATTGCATTTCTGTTGG 57.476 40.909 4.53 0.00 0.00 3.77
4265 6152 4.796830 CGATTGGAGATTGCATTTCTGTTG 59.203 41.667 4.53 0.00 0.00 3.33
4266 6153 4.460382 ACGATTGGAGATTGCATTTCTGTT 59.540 37.500 4.53 0.00 0.00 3.16
4267 6154 4.012374 ACGATTGGAGATTGCATTTCTGT 58.988 39.130 4.53 0.00 0.00 3.41
4268 6155 4.627611 ACGATTGGAGATTGCATTTCTG 57.372 40.909 4.53 0.00 0.00 3.02
4269 6156 6.757897 TTAACGATTGGAGATTGCATTTCT 57.242 33.333 0.00 0.00 0.00 2.52
4270 6157 7.008628 CAGTTTAACGATTGGAGATTGCATTTC 59.991 37.037 0.00 0.00 0.00 2.17
4271 6158 6.808212 CAGTTTAACGATTGGAGATTGCATTT 59.192 34.615 0.00 0.00 0.00 2.32
4272 6159 6.324819 CAGTTTAACGATTGGAGATTGCATT 58.675 36.000 0.00 0.00 0.00 3.56
4273 6160 5.677091 GCAGTTTAACGATTGGAGATTGCAT 60.677 40.000 0.00 0.00 0.00 3.96
4274 6161 4.379394 GCAGTTTAACGATTGGAGATTGCA 60.379 41.667 0.00 0.00 0.00 4.08
4275 6162 4.098416 GCAGTTTAACGATTGGAGATTGC 58.902 43.478 0.00 0.00 0.00 3.56
4276 6163 5.295431 TGCAGTTTAACGATTGGAGATTG 57.705 39.130 0.00 0.00 0.00 2.67
4277 6164 5.957842 TTGCAGTTTAACGATTGGAGATT 57.042 34.783 0.00 0.00 0.00 2.40
4349 6244 4.269183 TGCAGAAGACCTGTTCTCAAAAA 58.731 39.130 0.00 0.00 44.71 1.94
4350 6245 3.884895 TGCAGAAGACCTGTTCTCAAAA 58.115 40.909 0.00 0.00 44.71 2.44
4351 6246 3.558931 TGCAGAAGACCTGTTCTCAAA 57.441 42.857 0.00 0.00 44.71 2.69
4352 6247 3.777106 ATGCAGAAGACCTGTTCTCAA 57.223 42.857 0.00 0.00 44.71 3.02
4353 6248 4.763073 CATATGCAGAAGACCTGTTCTCA 58.237 43.478 0.00 0.00 44.71 3.27
4354 6249 3.559242 GCATATGCAGAAGACCTGTTCTC 59.441 47.826 22.84 0.00 44.71 2.87
4355 6250 3.539604 GCATATGCAGAAGACCTGTTCT 58.460 45.455 22.84 0.00 44.71 3.01
4356 6251 3.959573 GCATATGCAGAAGACCTGTTC 57.040 47.619 22.84 0.00 44.71 3.18
4369 6264 2.991190 GCATGCTGGTAAATGCATATGC 59.009 45.455 21.09 21.09 46.65 3.14
4376 6271 2.355444 TGACGATGCATGCTGGTAAATG 59.645 45.455 20.33 2.75 0.00 2.32
4377 6272 2.642427 TGACGATGCATGCTGGTAAAT 58.358 42.857 20.33 1.92 0.00 1.40
4378 6273 2.106477 TGACGATGCATGCTGGTAAA 57.894 45.000 20.33 0.00 0.00 2.01
4379 6274 2.330440 ATGACGATGCATGCTGGTAA 57.670 45.000 20.33 7.52 0.00 2.85
4380 6275 2.102252 TGTATGACGATGCATGCTGGTA 59.898 45.455 20.33 0.00 32.89 3.25
4381 6276 1.134431 TGTATGACGATGCATGCTGGT 60.134 47.619 20.33 13.57 32.89 4.00
4382 6277 1.529865 CTGTATGACGATGCATGCTGG 59.470 52.381 20.33 10.29 32.89 4.85
4383 6278 1.070108 GCTGTATGACGATGCATGCTG 60.070 52.381 20.33 11.24 34.57 4.41
4384 6279 1.202615 AGCTGTATGACGATGCATGCT 60.203 47.619 20.33 4.11 32.89 3.79
4385 6280 1.070108 CAGCTGTATGACGATGCATGC 60.070 52.381 11.82 11.82 0.00 4.06
4386 6281 2.943843 CAGCTGTATGACGATGCATG 57.056 50.000 2.46 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.