Multiple sequence alignment - TraesCS5B01G143900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G143900 chr5B 100.000 2399 0 0 1 2399 271154451 271156849 0.000000e+00 4431.0
1 TraesCS5B01G143900 chr5B 95.556 225 8 1 338 560 271161874 271162098 2.270000e-95 359.0
2 TraesCS5B01G143900 chr5B 93.886 229 12 2 344 570 420461146 420461374 6.350000e-91 344.0
3 TraesCS5B01G143900 chr5B 94.570 221 10 1 344 562 316559334 316559114 8.210000e-90 340.0
4 TraesCS5B01G143900 chr6B 96.846 2061 60 3 344 2399 342808485 342806425 0.000000e+00 3441.0
5 TraesCS5B01G143900 chr6B 95.872 218 7 1 344 559 342801396 342801179 3.790000e-93 351.0
6 TraesCS5B01G143900 chr6B 92.857 224 14 1 338 559 703264416 703264639 8.270000e-85 324.0
7 TraesCS5B01G143900 chr6B 90.741 162 10 3 40 197 321300625 321300785 6.720000e-51 211.0
8 TraesCS5B01G143900 chr3A 95.160 1591 65 3 812 2399 13830358 13828777 0.000000e+00 2501.0
9 TraesCS5B01G143900 chr5A 95.097 1591 66 3 812 2399 693606373 693607954 0.000000e+00 2495.0
10 TraesCS5B01G143900 chr5A 96.324 272 9 1 548 818 439845697 439845968 1.690000e-121 446.0
11 TraesCS5B01G143900 chr5A 81.605 299 32 8 817 1094 669593225 669592929 2.400000e-55 226.0
12 TraesCS5B01G143900 chr5A 96.154 130 5 0 214 343 321033310 321033439 1.870000e-51 213.0
13 TraesCS5B01G143900 chr5A 80.402 199 21 11 1220 1409 439846093 439846282 4.160000e-28 135.0
14 TraesCS5B01G143900 chr6A 95.035 1591 67 3 812 2399 14149986 14148405 0.000000e+00 2490.0
15 TraesCS5B01G143900 chr6A 88.040 694 68 12 1710 2394 583032621 583033308 0.000000e+00 808.0
16 TraesCS5B01G143900 chr2A 94.532 1591 75 3 812 2399 418808756 418810337 0.000000e+00 2446.0
17 TraesCS5B01G143900 chr2A 97.059 272 7 1 548 818 43670113 43669842 7.820000e-125 457.0
18 TraesCS5B01G143900 chr2A 80.612 196 19 12 1223 1409 43669714 43669529 1.500000e-27 134.0
19 TraesCS5B01G143900 chr2B 90.686 816 66 7 1586 2399 155140268 155139461 0.000000e+00 1077.0
20 TraesCS5B01G143900 chr2B 93.218 693 36 3 817 1507 299000552 298999869 0.000000e+00 1009.0
21 TraesCS5B01G143900 chr2B 85.479 303 26 7 1224 1526 155142153 155141869 1.390000e-77 300.0
22 TraesCS5B01G143900 chr2B 84.783 138 11 9 472 604 627001852 627001720 1.940000e-26 130.0
23 TraesCS5B01G143900 chr2B 88.750 80 9 0 1519 1598 155140609 155140530 5.460000e-17 99.0
24 TraesCS5B01G143900 chr2B 95.238 42 2 0 1178 1219 728616014 728616055 1.540000e-07 67.6
25 TraesCS5B01G143900 chr1D 87.791 688 74 9 1713 2394 386796666 386795983 0.000000e+00 797.0
26 TraesCS5B01G143900 chr3B 88.720 656 63 9 1747 2394 775838912 775838260 0.000000e+00 791.0
27 TraesCS5B01G143900 chr3B 93.103 232 12 3 343 570 807704219 807704450 1.060000e-88 337.0
28 TraesCS5B01G143900 chr3B 93.304 224 13 1 338 559 807710929 807711152 1.780000e-86 329.0
29 TraesCS5B01G143900 chr3B 86.364 176 14 5 33 204 344975098 344974929 1.460000e-42 183.0
30 TraesCS5B01G143900 chr3B 88.235 153 16 2 35 186 188737443 188737594 5.270000e-42 182.0
31 TraesCS5B01G143900 chr3B 84.270 89 3 7 1132 1220 745725636 745725713 2.560000e-10 76.8
32 TraesCS5B01G143900 chr5D 97.426 272 6 1 548 818 45042055 45042326 1.680000e-126 462.0
33 TraesCS5B01G143900 chr5D 81.910 199 18 11 1220 1409 45042451 45042640 4.130000e-33 152.0
34 TraesCS5B01G143900 chr1B 94.118 272 13 3 548 818 623270842 623270573 6.170000e-111 411.0
35 TraesCS5B01G143900 chr2D 94.222 225 11 1 337 559 99201883 99202107 2.280000e-90 342.0
36 TraesCS5B01G143900 chr2D 86.747 166 17 4 34 197 285336716 285336878 1.890000e-41 180.0
37 TraesCS5B01G143900 chr2D 82.412 199 21 13 35 229 311703323 311703135 6.860000e-36 161.0
38 TraesCS5B01G143900 chr7B 81.605 299 32 8 817 1094 517843465 517843761 2.400000e-55 226.0
39 TraesCS5B01G143900 chr7B 81.271 299 33 8 817 1094 107640880 107640584 1.120000e-53 220.0
40 TraesCS5B01G143900 chr7B 95.238 42 2 0 1178 1219 93325257 93325216 1.540000e-07 67.6
41 TraesCS5B01G143900 chr4B 90.741 162 10 3 40 197 124024439 124024279 6.720000e-51 211.0
42 TraesCS5B01G143900 chr4B 85.143 175 16 7 34 205 660939299 660939466 1.140000e-38 171.0
43 TraesCS5B01G143900 chr4B 90.000 60 2 2 548 606 667690464 667690408 9.200000e-10 75.0
44 TraesCS5B01G143900 chr3D 88.623 167 16 3 33 197 267256235 267256070 1.450000e-47 200.0
45 TraesCS5B01G143900 chr7D 85.714 168 14 8 42 205 15903512 15903673 4.100000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G143900 chr5B 271154451 271156849 2398 False 4431.0 4431 100.0000 1 2399 1 chr5B.!!$F1 2398
1 TraesCS5B01G143900 chr6B 342806425 342808485 2060 True 3441.0 3441 96.8460 344 2399 1 chr6B.!!$R2 2055
2 TraesCS5B01G143900 chr3A 13828777 13830358 1581 True 2501.0 2501 95.1600 812 2399 1 chr3A.!!$R1 1587
3 TraesCS5B01G143900 chr5A 693606373 693607954 1581 False 2495.0 2495 95.0970 812 2399 1 chr5A.!!$F2 1587
4 TraesCS5B01G143900 chr5A 439845697 439846282 585 False 290.5 446 88.3630 548 1409 2 chr5A.!!$F3 861
5 TraesCS5B01G143900 chr6A 14148405 14149986 1581 True 2490.0 2490 95.0350 812 2399 1 chr6A.!!$R1 1587
6 TraesCS5B01G143900 chr6A 583032621 583033308 687 False 808.0 808 88.0400 1710 2394 1 chr6A.!!$F1 684
7 TraesCS5B01G143900 chr2A 418808756 418810337 1581 False 2446.0 2446 94.5320 812 2399 1 chr2A.!!$F1 1587
8 TraesCS5B01G143900 chr2A 43669529 43670113 584 True 295.5 457 88.8355 548 1409 2 chr2A.!!$R1 861
9 TraesCS5B01G143900 chr2B 298999869 299000552 683 True 1009.0 1009 93.2180 817 1507 1 chr2B.!!$R1 690
10 TraesCS5B01G143900 chr2B 155139461 155142153 2692 True 492.0 1077 88.3050 1224 2399 3 chr2B.!!$R3 1175
11 TraesCS5B01G143900 chr1D 386795983 386796666 683 True 797.0 797 87.7910 1713 2394 1 chr1D.!!$R1 681
12 TraesCS5B01G143900 chr3B 775838260 775838912 652 True 791.0 791 88.7200 1747 2394 1 chr3B.!!$R2 647
13 TraesCS5B01G143900 chr5D 45042055 45042640 585 False 307.0 462 89.6680 548 1409 2 chr5D.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 182 0.031178 GCACAGCTCAACAAACCCTG 59.969 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 3713 2.673258 TGAAGATAGCCACCGGATGTA 58.327 47.619 9.46 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 6.133698 ATTTTATCGAAAAAGGCTTTCGCCC 61.134 40.000 13.76 2.28 45.44 6.13
57 58 8.994207 ATTTTATCGAAAAAGGCTTTCGCCCC 62.994 42.308 13.76 0.57 45.44 5.80
64 65 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
65 66 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
66 67 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
67 68 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
68 69 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
69 70 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
70 71 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
71 72 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
88 89 6.403866 AAATAAAGCAAACCATCACAGTCA 57.596 33.333 0.00 0.00 0.00 3.41
89 90 3.715628 AAAGCAAACCATCACAGTCAC 57.284 42.857 0.00 0.00 0.00 3.67
90 91 2.346766 AGCAAACCATCACAGTCACA 57.653 45.000 0.00 0.00 0.00 3.58
91 92 2.653726 AGCAAACCATCACAGTCACAA 58.346 42.857 0.00 0.00 0.00 3.33
92 93 3.023119 AGCAAACCATCACAGTCACAAA 58.977 40.909 0.00 0.00 0.00 2.83
93 94 3.067180 AGCAAACCATCACAGTCACAAAG 59.933 43.478 0.00 0.00 0.00 2.77
94 95 3.181487 GCAAACCATCACAGTCACAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
95 96 4.036262 GCAAACCATCACAGTCACAAAGTA 59.964 41.667 0.00 0.00 0.00 2.24
96 97 5.449862 GCAAACCATCACAGTCACAAAGTAA 60.450 40.000 0.00 0.00 0.00 2.24
97 98 5.751243 AACCATCACAGTCACAAAGTAAC 57.249 39.130 0.00 0.00 0.00 2.50
98 99 4.776349 ACCATCACAGTCACAAAGTAACA 58.224 39.130 0.00 0.00 0.00 2.41
99 100 4.574828 ACCATCACAGTCACAAAGTAACAC 59.425 41.667 0.00 0.00 0.00 3.32
100 101 4.574421 CCATCACAGTCACAAAGTAACACA 59.426 41.667 0.00 0.00 0.00 3.72
101 102 5.239306 CCATCACAGTCACAAAGTAACACAT 59.761 40.000 0.00 0.00 0.00 3.21
102 103 6.426633 CCATCACAGTCACAAAGTAACACATA 59.573 38.462 0.00 0.00 0.00 2.29
103 104 7.041440 CCATCACAGTCACAAAGTAACACATAA 60.041 37.037 0.00 0.00 0.00 1.90
104 105 7.477144 TCACAGTCACAAAGTAACACATAAG 57.523 36.000 0.00 0.00 0.00 1.73
105 106 7.045416 TCACAGTCACAAAGTAACACATAAGT 58.955 34.615 0.00 0.00 0.00 2.24
106 107 7.551262 TCACAGTCACAAAGTAACACATAAGTT 59.449 33.333 0.00 0.00 35.55 2.66
107 108 7.850982 CACAGTCACAAAGTAACACATAAGTTC 59.149 37.037 0.00 0.00 33.07 3.01
108 109 7.551262 ACAGTCACAAAGTAACACATAAGTTCA 59.449 33.333 0.00 0.00 33.07 3.18
109 110 7.850982 CAGTCACAAAGTAACACATAAGTTCAC 59.149 37.037 0.00 0.00 33.07 3.18
110 111 7.012044 AGTCACAAAGTAACACATAAGTTCACC 59.988 37.037 0.00 0.00 33.07 4.02
111 112 6.261381 TCACAAAGTAACACATAAGTTCACCC 59.739 38.462 0.00 0.00 33.07 4.61
112 113 6.038825 CACAAAGTAACACATAAGTTCACCCA 59.961 38.462 0.00 0.00 33.07 4.51
113 114 6.038936 ACAAAGTAACACATAAGTTCACCCAC 59.961 38.462 0.00 0.00 33.07 4.61
114 115 5.298989 AGTAACACATAAGTTCACCCACA 57.701 39.130 0.00 0.00 33.07 4.17
115 116 5.061179 AGTAACACATAAGTTCACCCACAC 58.939 41.667 0.00 0.00 33.07 3.82
116 117 3.569194 ACACATAAGTTCACCCACACA 57.431 42.857 0.00 0.00 0.00 3.72
117 118 3.211045 ACACATAAGTTCACCCACACAC 58.789 45.455 0.00 0.00 0.00 3.82
118 119 3.210227 CACATAAGTTCACCCACACACA 58.790 45.455 0.00 0.00 0.00 3.72
119 120 3.820467 CACATAAGTTCACCCACACACAT 59.180 43.478 0.00 0.00 0.00 3.21
120 121 3.820467 ACATAAGTTCACCCACACACATG 59.180 43.478 0.00 0.00 0.00 3.21
121 122 1.691196 AAGTTCACCCACACACATGG 58.309 50.000 0.00 0.00 39.71 3.66
122 123 0.843309 AGTTCACCCACACACATGGA 59.157 50.000 0.00 0.00 43.02 3.41
123 124 1.202806 AGTTCACCCACACACATGGAG 60.203 52.381 0.00 0.00 43.02 3.86
124 125 0.110295 TTCACCCACACACATGGAGG 59.890 55.000 0.00 0.00 43.02 4.30
125 126 0.766288 TCACCCACACACATGGAGGA 60.766 55.000 0.00 0.00 43.02 3.71
126 127 0.329261 CACCCACACACATGGAGGAT 59.671 55.000 0.00 0.00 43.02 3.24
127 128 0.620556 ACCCACACACATGGAGGATC 59.379 55.000 0.00 0.00 43.02 3.36
128 129 0.462581 CCCACACACATGGAGGATCG 60.463 60.000 0.00 0.00 43.02 3.69
129 130 1.091771 CCACACACATGGAGGATCGC 61.092 60.000 0.00 0.00 43.02 4.58
130 131 0.391528 CACACACATGGAGGATCGCA 60.392 55.000 0.00 0.00 34.37 5.10
131 132 0.391661 ACACACATGGAGGATCGCAC 60.392 55.000 0.00 0.00 34.37 5.34
132 133 0.391528 CACACATGGAGGATCGCACA 60.392 55.000 0.00 0.00 34.37 4.57
133 134 0.324614 ACACATGGAGGATCGCACAA 59.675 50.000 0.00 0.00 34.37 3.33
134 135 0.729116 CACATGGAGGATCGCACAAC 59.271 55.000 0.00 0.00 34.37 3.32
135 136 0.324614 ACATGGAGGATCGCACAACA 59.675 50.000 0.00 0.00 34.37 3.33
136 137 1.065199 ACATGGAGGATCGCACAACAT 60.065 47.619 0.00 0.00 34.37 2.71
137 138 2.170397 ACATGGAGGATCGCACAACATA 59.830 45.455 0.00 0.00 34.37 2.29
138 139 2.602257 TGGAGGATCGCACAACATAG 57.398 50.000 0.00 0.00 34.37 2.23
139 140 2.107366 TGGAGGATCGCACAACATAGA 58.893 47.619 0.00 0.00 34.37 1.98
140 141 2.101415 TGGAGGATCGCACAACATAGAG 59.899 50.000 0.00 0.00 34.37 2.43
141 142 2.101582 GGAGGATCGCACAACATAGAGT 59.898 50.000 0.00 0.00 34.37 3.24
142 143 3.318275 GGAGGATCGCACAACATAGAGTA 59.682 47.826 0.00 0.00 34.37 2.59
143 144 4.291783 GAGGATCGCACAACATAGAGTAC 58.708 47.826 0.00 0.00 0.00 2.73
144 145 3.699538 AGGATCGCACAACATAGAGTACA 59.300 43.478 0.00 0.00 0.00 2.90
145 146 4.159693 AGGATCGCACAACATAGAGTACAA 59.840 41.667 0.00 0.00 0.00 2.41
146 147 4.504461 GGATCGCACAACATAGAGTACAAG 59.496 45.833 0.00 0.00 0.00 3.16
147 148 4.776795 TCGCACAACATAGAGTACAAGA 57.223 40.909 0.00 0.00 0.00 3.02
148 149 4.733850 TCGCACAACATAGAGTACAAGAG 58.266 43.478 0.00 0.00 0.00 2.85
149 150 3.859961 CGCACAACATAGAGTACAAGAGG 59.140 47.826 0.00 0.00 0.00 3.69
150 151 4.184629 GCACAACATAGAGTACAAGAGGG 58.815 47.826 0.00 0.00 0.00 4.30
151 152 4.322801 GCACAACATAGAGTACAAGAGGGT 60.323 45.833 0.00 0.00 0.00 4.34
152 153 5.794894 CACAACATAGAGTACAAGAGGGTT 58.205 41.667 0.00 0.00 0.00 4.11
153 154 5.869888 CACAACATAGAGTACAAGAGGGTTC 59.130 44.000 0.00 0.00 0.00 3.62
154 155 5.780793 ACAACATAGAGTACAAGAGGGTTCT 59.219 40.000 0.00 0.00 34.29 3.01
155 156 5.923733 ACATAGAGTACAAGAGGGTTCTG 57.076 43.478 0.00 0.00 32.79 3.02
156 157 4.160626 ACATAGAGTACAAGAGGGTTCTGC 59.839 45.833 0.00 0.00 32.79 4.26
157 158 2.896039 AGAGTACAAGAGGGTTCTGCT 58.104 47.619 0.00 0.00 32.79 4.24
158 159 2.564947 AGAGTACAAGAGGGTTCTGCTG 59.435 50.000 0.00 0.00 32.79 4.41
159 160 2.563179 GAGTACAAGAGGGTTCTGCTGA 59.437 50.000 0.00 0.00 32.79 4.26
160 161 2.972713 AGTACAAGAGGGTTCTGCTGAA 59.027 45.455 1.33 1.33 32.79 3.02
161 162 2.557920 ACAAGAGGGTTCTGCTGAAG 57.442 50.000 6.24 0.00 32.79 3.02
162 163 1.072965 ACAAGAGGGTTCTGCTGAAGG 59.927 52.381 6.24 0.00 32.79 3.46
163 164 0.037447 AAGAGGGTTCTGCTGAAGGC 59.963 55.000 6.24 0.00 42.22 4.35
174 175 3.011085 CTGAAGGCACAGCTCAACA 57.989 52.632 0.00 0.00 0.00 3.33
175 176 1.311859 CTGAAGGCACAGCTCAACAA 58.688 50.000 0.00 0.00 0.00 2.83
176 177 1.677576 CTGAAGGCACAGCTCAACAAA 59.322 47.619 0.00 0.00 0.00 2.83
177 178 1.405105 TGAAGGCACAGCTCAACAAAC 59.595 47.619 0.00 0.00 0.00 2.93
178 179 0.746659 AAGGCACAGCTCAACAAACC 59.253 50.000 0.00 0.00 0.00 3.27
179 180 1.109323 AGGCACAGCTCAACAAACCC 61.109 55.000 0.00 0.00 0.00 4.11
180 181 1.109323 GGCACAGCTCAACAAACCCT 61.109 55.000 0.00 0.00 0.00 4.34
181 182 0.031178 GCACAGCTCAACAAACCCTG 59.969 55.000 0.00 0.00 0.00 4.45
182 183 1.679139 CACAGCTCAACAAACCCTGA 58.321 50.000 0.00 0.00 0.00 3.86
183 184 2.023673 CACAGCTCAACAAACCCTGAA 58.976 47.619 0.00 0.00 0.00 3.02
184 185 2.426738 CACAGCTCAACAAACCCTGAAA 59.573 45.455 0.00 0.00 0.00 2.69
185 186 3.096092 ACAGCTCAACAAACCCTGAAAA 58.904 40.909 0.00 0.00 0.00 2.29
186 187 3.706086 ACAGCTCAACAAACCCTGAAAAT 59.294 39.130 0.00 0.00 0.00 1.82
187 188 4.053295 CAGCTCAACAAACCCTGAAAATG 58.947 43.478 0.00 0.00 0.00 2.32
188 189 3.960102 AGCTCAACAAACCCTGAAAATGA 59.040 39.130 0.00 0.00 0.00 2.57
189 190 4.405358 AGCTCAACAAACCCTGAAAATGAA 59.595 37.500 0.00 0.00 0.00 2.57
190 191 5.104982 AGCTCAACAAACCCTGAAAATGAAA 60.105 36.000 0.00 0.00 0.00 2.69
191 192 5.584251 GCTCAACAAACCCTGAAAATGAAAA 59.416 36.000 0.00 0.00 0.00 2.29
192 193 6.456853 GCTCAACAAACCCTGAAAATGAAAAC 60.457 38.462 0.00 0.00 0.00 2.43
193 194 5.578727 TCAACAAACCCTGAAAATGAAAACG 59.421 36.000 0.00 0.00 0.00 3.60
194 195 5.331876 ACAAACCCTGAAAATGAAAACGA 57.668 34.783 0.00 0.00 0.00 3.85
195 196 5.725362 ACAAACCCTGAAAATGAAAACGAA 58.275 33.333 0.00 0.00 0.00 3.85
196 197 6.166982 ACAAACCCTGAAAATGAAAACGAAA 58.833 32.000 0.00 0.00 0.00 3.46
197 198 6.651225 ACAAACCCTGAAAATGAAAACGAAAA 59.349 30.769 0.00 0.00 0.00 2.29
198 199 6.656314 AACCCTGAAAATGAAAACGAAAAC 57.344 33.333 0.00 0.00 0.00 2.43
199 200 4.801516 ACCCTGAAAATGAAAACGAAAACG 59.198 37.500 0.00 0.00 0.00 3.60
200 201 5.038033 CCCTGAAAATGAAAACGAAAACGA 58.962 37.500 0.00 0.00 0.00 3.85
201 202 5.517054 CCCTGAAAATGAAAACGAAAACGAA 59.483 36.000 0.00 0.00 0.00 3.85
202 203 6.291585 CCCTGAAAATGAAAACGAAAACGAAG 60.292 38.462 0.00 0.00 0.00 3.79
203 204 6.291585 CCTGAAAATGAAAACGAAAACGAAGG 60.292 38.462 0.00 0.00 0.00 3.46
204 205 5.004916 TGAAAATGAAAACGAAAACGAAGGC 59.995 36.000 0.00 0.00 0.00 4.35
205 206 3.701532 ATGAAAACGAAAACGAAGGCA 57.298 38.095 0.00 0.00 0.00 4.75
206 207 3.059634 TGAAAACGAAAACGAAGGCAG 57.940 42.857 0.00 0.00 0.00 4.85
207 208 2.678836 TGAAAACGAAAACGAAGGCAGA 59.321 40.909 0.00 0.00 0.00 4.26
208 209 3.314080 TGAAAACGAAAACGAAGGCAGAT 59.686 39.130 0.00 0.00 0.00 2.90
209 210 4.512198 TGAAAACGAAAACGAAGGCAGATA 59.488 37.500 0.00 0.00 0.00 1.98
210 211 5.007823 TGAAAACGAAAACGAAGGCAGATAA 59.992 36.000 0.00 0.00 0.00 1.75
211 212 5.427036 AAACGAAAACGAAGGCAGATAAA 57.573 34.783 0.00 0.00 0.00 1.40
212 213 4.400036 ACGAAAACGAAGGCAGATAAAC 57.600 40.909 0.00 0.00 0.00 2.01
213 214 4.062991 ACGAAAACGAAGGCAGATAAACT 58.937 39.130 0.00 0.00 0.00 2.66
227 228 6.602564 CAGATAAACTGCAACGATTTTCAC 57.397 37.500 0.00 0.00 39.86 3.18
228 229 6.373779 CAGATAAACTGCAACGATTTTCACT 58.626 36.000 0.00 0.00 39.86 3.41
229 230 7.518161 CAGATAAACTGCAACGATTTTCACTA 58.482 34.615 0.00 0.00 39.86 2.74
230 231 8.015087 CAGATAAACTGCAACGATTTTCACTAA 58.985 33.333 0.00 0.00 39.86 2.24
231 232 8.564574 AGATAAACTGCAACGATTTTCACTAAA 58.435 29.630 0.00 0.00 0.00 1.85
232 233 9.176181 GATAAACTGCAACGATTTTCACTAAAA 57.824 29.630 0.00 0.00 38.87 1.52
233 234 7.449934 AAACTGCAACGATTTTCACTAAAAG 57.550 32.000 0.00 0.00 37.97 2.27
234 235 5.519722 ACTGCAACGATTTTCACTAAAAGG 58.480 37.500 0.00 0.00 37.97 3.11
235 236 5.298276 ACTGCAACGATTTTCACTAAAAGGA 59.702 36.000 0.00 0.00 37.97 3.36
236 237 6.137794 TGCAACGATTTTCACTAAAAGGAA 57.862 33.333 0.00 0.00 37.97 3.36
237 238 6.565234 TGCAACGATTTTCACTAAAAGGAAA 58.435 32.000 0.00 0.00 37.97 3.13
238 239 7.036220 TGCAACGATTTTCACTAAAAGGAAAA 58.964 30.769 0.00 0.00 44.36 2.29
239 240 7.545965 TGCAACGATTTTCACTAAAAGGAAAAA 59.454 29.630 0.00 0.00 43.71 1.94
240 241 7.844169 GCAACGATTTTCACTAAAAGGAAAAAC 59.156 33.333 0.00 0.00 43.71 2.43
241 242 9.083080 CAACGATTTTCACTAAAAGGAAAAACT 57.917 29.630 0.00 0.00 43.71 2.66
242 243 8.628882 ACGATTTTCACTAAAAGGAAAAACTG 57.371 30.769 0.00 0.00 43.71 3.16
243 244 7.704899 ACGATTTTCACTAAAAGGAAAAACTGG 59.295 33.333 0.00 0.00 43.71 4.00
244 245 7.306574 CGATTTTCACTAAAAGGAAAAACTGGC 60.307 37.037 0.00 0.00 43.71 4.85
245 246 5.923733 TTCACTAAAAGGAAAAACTGGCA 57.076 34.783 0.00 0.00 0.00 4.92
246 247 5.923733 TCACTAAAAGGAAAAACTGGCAA 57.076 34.783 0.00 0.00 0.00 4.52
247 248 6.478512 TCACTAAAAGGAAAAACTGGCAAT 57.521 33.333 0.00 0.00 0.00 3.56
248 249 6.279882 TCACTAAAAGGAAAAACTGGCAATG 58.720 36.000 0.00 0.00 0.00 2.82
249 250 5.466393 CACTAAAAGGAAAAACTGGCAATGG 59.534 40.000 0.00 0.00 0.00 3.16
250 251 4.769345 AAAAGGAAAAACTGGCAATGGA 57.231 36.364 0.00 0.00 0.00 3.41
251 252 4.769345 AAAGGAAAAACTGGCAATGGAA 57.231 36.364 0.00 0.00 0.00 3.53
252 253 4.980339 AAGGAAAAACTGGCAATGGAAT 57.020 36.364 0.00 0.00 0.00 3.01
253 254 4.276058 AGGAAAAACTGGCAATGGAATG 57.724 40.909 0.00 0.00 0.00 2.67
254 255 3.903090 AGGAAAAACTGGCAATGGAATGA 59.097 39.130 0.00 0.00 0.00 2.57
255 256 4.533311 AGGAAAAACTGGCAATGGAATGAT 59.467 37.500 0.00 0.00 0.00 2.45
256 257 4.632688 GGAAAAACTGGCAATGGAATGATG 59.367 41.667 0.00 0.00 0.00 3.07
257 258 4.895668 AAAACTGGCAATGGAATGATGT 57.104 36.364 0.00 0.00 0.00 3.06
258 259 3.880047 AACTGGCAATGGAATGATGTG 57.120 42.857 0.00 0.00 0.00 3.21
259 260 2.811410 ACTGGCAATGGAATGATGTGT 58.189 42.857 0.00 0.00 0.00 3.72
260 261 2.494471 ACTGGCAATGGAATGATGTGTG 59.506 45.455 0.00 0.00 0.00 3.82
261 262 1.205179 TGGCAATGGAATGATGTGTGC 59.795 47.619 0.00 0.00 0.00 4.57
262 263 1.205179 GGCAATGGAATGATGTGTGCA 59.795 47.619 0.00 0.00 32.18 4.57
263 264 2.353903 GGCAATGGAATGATGTGTGCAA 60.354 45.455 0.00 0.00 32.18 4.08
264 265 3.527533 GCAATGGAATGATGTGTGCAAT 58.472 40.909 0.00 0.00 0.00 3.56
265 266 3.936453 GCAATGGAATGATGTGTGCAATT 59.064 39.130 0.00 0.00 0.00 2.32
266 267 4.201773 GCAATGGAATGATGTGTGCAATTG 60.202 41.667 0.00 0.00 0.00 2.32
267 268 5.172205 CAATGGAATGATGTGTGCAATTGA 58.828 37.500 10.34 0.00 0.00 2.57
268 269 4.177165 TGGAATGATGTGTGCAATTGAC 57.823 40.909 10.34 5.41 0.00 3.18
269 270 3.827876 TGGAATGATGTGTGCAATTGACT 59.172 39.130 10.34 0.00 0.00 3.41
270 271 4.281435 TGGAATGATGTGTGCAATTGACTT 59.719 37.500 10.34 0.00 0.00 3.01
271 272 5.221481 TGGAATGATGTGTGCAATTGACTTT 60.221 36.000 10.34 0.00 0.00 2.66
272 273 5.119588 GGAATGATGTGTGCAATTGACTTTG 59.880 40.000 10.34 0.00 0.00 2.77
273 274 4.652421 TGATGTGTGCAATTGACTTTGT 57.348 36.364 10.34 0.00 0.00 2.83
274 275 4.361420 TGATGTGTGCAATTGACTTTGTG 58.639 39.130 10.34 0.00 0.00 3.33
275 276 3.162202 TGTGTGCAATTGACTTTGTGG 57.838 42.857 10.34 0.00 0.00 4.17
276 277 2.757314 TGTGTGCAATTGACTTTGTGGA 59.243 40.909 10.34 0.00 0.00 4.02
277 278 3.181488 TGTGTGCAATTGACTTTGTGGAG 60.181 43.478 10.34 0.00 0.00 3.86
278 279 3.023119 TGTGCAATTGACTTTGTGGAGT 58.977 40.909 10.34 0.00 0.00 3.85
279 280 3.446873 TGTGCAATTGACTTTGTGGAGTT 59.553 39.130 10.34 0.00 0.00 3.01
280 281 3.798337 GTGCAATTGACTTTGTGGAGTTG 59.202 43.478 10.34 0.00 0.00 3.16
281 282 3.698539 TGCAATTGACTTTGTGGAGTTGA 59.301 39.130 10.34 0.00 0.00 3.18
282 283 4.341806 TGCAATTGACTTTGTGGAGTTGAT 59.658 37.500 10.34 0.00 0.00 2.57
283 284 4.919754 GCAATTGACTTTGTGGAGTTGATC 59.080 41.667 10.34 0.00 0.00 2.92
284 285 5.278660 GCAATTGACTTTGTGGAGTTGATCT 60.279 40.000 10.34 0.00 0.00 2.75
285 286 6.072508 GCAATTGACTTTGTGGAGTTGATCTA 60.073 38.462 10.34 0.00 0.00 1.98
286 287 7.524912 CAATTGACTTTGTGGAGTTGATCTAG 58.475 38.462 0.00 0.00 0.00 2.43
287 288 5.152623 TGACTTTGTGGAGTTGATCTAGG 57.847 43.478 0.00 0.00 0.00 3.02
288 289 4.020218 TGACTTTGTGGAGTTGATCTAGGG 60.020 45.833 0.00 0.00 0.00 3.53
289 290 4.168101 ACTTTGTGGAGTTGATCTAGGGA 58.832 43.478 0.00 0.00 0.00 4.20
290 291 4.223923 ACTTTGTGGAGTTGATCTAGGGAG 59.776 45.833 0.00 0.00 0.00 4.30
291 292 2.752030 TGTGGAGTTGATCTAGGGAGG 58.248 52.381 0.00 0.00 0.00 4.30
292 293 2.044492 TGTGGAGTTGATCTAGGGAGGT 59.956 50.000 0.00 0.00 0.00 3.85
293 294 2.432510 GTGGAGTTGATCTAGGGAGGTG 59.567 54.545 0.00 0.00 0.00 4.00
294 295 1.414550 GGAGTTGATCTAGGGAGGTGC 59.585 57.143 0.00 0.00 0.00 5.01
295 296 2.393646 GAGTTGATCTAGGGAGGTGCT 58.606 52.381 0.00 0.00 0.00 4.40
296 297 3.567397 GAGTTGATCTAGGGAGGTGCTA 58.433 50.000 0.00 0.00 0.00 3.49
297 298 3.961408 GAGTTGATCTAGGGAGGTGCTAA 59.039 47.826 0.00 0.00 0.00 3.09
298 299 4.362677 AGTTGATCTAGGGAGGTGCTAAA 58.637 43.478 0.00 0.00 0.00 1.85
299 300 4.407296 AGTTGATCTAGGGAGGTGCTAAAG 59.593 45.833 0.00 0.00 0.00 1.85
300 301 4.265856 TGATCTAGGGAGGTGCTAAAGA 57.734 45.455 0.00 0.00 0.00 2.52
301 302 4.820775 TGATCTAGGGAGGTGCTAAAGAT 58.179 43.478 0.00 0.00 0.00 2.40
302 303 4.590647 TGATCTAGGGAGGTGCTAAAGATG 59.409 45.833 0.00 0.00 0.00 2.90
303 304 3.995636 TCTAGGGAGGTGCTAAAGATGT 58.004 45.455 0.00 0.00 0.00 3.06
304 305 3.706594 TCTAGGGAGGTGCTAAAGATGTG 59.293 47.826 0.00 0.00 0.00 3.21
305 306 2.269940 AGGGAGGTGCTAAAGATGTGT 58.730 47.619 0.00 0.00 0.00 3.72
306 307 2.026822 AGGGAGGTGCTAAAGATGTGTG 60.027 50.000 0.00 0.00 0.00 3.82
307 308 1.740025 GGAGGTGCTAAAGATGTGTGC 59.260 52.381 0.00 0.00 0.00 4.57
308 309 1.394917 GAGGTGCTAAAGATGTGTGCG 59.605 52.381 0.00 0.00 0.00 5.34
309 310 0.179189 GGTGCTAAAGATGTGTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
310 311 0.179189 GTGCTAAAGATGTGTGCGCC 60.179 55.000 4.18 0.00 0.00 6.53
311 312 1.305219 TGCTAAAGATGTGTGCGCCC 61.305 55.000 4.18 0.00 0.00 6.13
312 313 1.305219 GCTAAAGATGTGTGCGCCCA 61.305 55.000 4.18 0.00 0.00 5.36
313 314 1.382522 CTAAAGATGTGTGCGCCCAT 58.617 50.000 4.18 4.22 0.00 4.00
314 315 1.064505 CTAAAGATGTGTGCGCCCATG 59.935 52.381 4.18 0.00 0.00 3.66
315 316 2.216750 AAAGATGTGTGCGCCCATGC 62.217 55.000 4.18 0.00 0.00 4.06
316 317 3.442167 GATGTGTGCGCCCATGCA 61.442 61.111 4.18 0.00 43.95 3.96
325 326 3.912907 GCCCATGCATGCAGGCTC 61.913 66.667 32.82 20.53 42.34 4.70
326 327 3.224324 CCCATGCATGCAGGCTCC 61.224 66.667 26.29 0.00 34.04 4.70
327 328 2.441348 CCATGCATGCAGGCTCCA 60.441 61.111 26.29 4.34 34.04 3.86
328 329 2.490148 CCATGCATGCAGGCTCCAG 61.490 63.158 26.29 8.94 34.04 3.86
329 330 1.453197 CATGCATGCAGGCTCCAGA 60.453 57.895 26.69 3.47 34.04 3.86
330 331 1.035385 CATGCATGCAGGCTCCAGAA 61.035 55.000 26.69 2.62 34.04 3.02
331 332 0.323999 ATGCATGCAGGCTCCAGAAA 60.324 50.000 26.69 1.78 34.04 2.52
332 333 0.963856 TGCATGCAGGCTCCAGAAAG 60.964 55.000 25.23 0.00 34.04 2.62
333 334 0.964358 GCATGCAGGCTCCAGAAAGT 60.964 55.000 17.57 0.00 0.00 2.66
334 335 0.809385 CATGCAGGCTCCAGAAAGTG 59.191 55.000 0.00 0.00 0.00 3.16
466 469 5.862924 ACGGACATGTCTCTTTGTAATTG 57.137 39.130 24.50 3.02 0.00 2.32
470 473 4.072131 ACATGTCTCTTTGTAATTGCCGT 58.928 39.130 0.00 0.00 0.00 5.68
623 627 0.467290 AAAGCGAAGGGGAAACAGCA 60.467 50.000 0.00 0.00 0.00 4.41
827 831 0.320771 CCTACAGCAGAACGGCAAGT 60.321 55.000 0.00 0.99 35.83 3.16
1022 1027 2.341176 CCGGACGACGTTTCCCTT 59.659 61.111 0.13 0.00 42.24 3.95
1598 3151 4.680171 GCGGTTGCAGTTTTAAGTCTAT 57.320 40.909 0.00 0.00 42.15 1.98
1726 3280 8.212495 CGTAACTGTGTACAACAACTCTATTTC 58.788 37.037 0.00 0.00 38.67 2.17
1730 3284 3.998341 TGTACAACAACTCTATTTCGGCC 59.002 43.478 0.00 0.00 0.00 6.13
1898 3455 7.656137 GTGAGGTCTACATCTTGTCACTTTAAA 59.344 37.037 0.00 0.00 0.00 1.52
1986 3543 9.769677 ATCATAAGGTAATACTGGCATCTACTA 57.230 33.333 0.00 0.00 0.00 1.82
2155 3713 7.569639 TTTCTATTACTGCGAGATCTACACT 57.430 36.000 0.00 0.00 0.00 3.55
2166 3724 3.223435 AGATCTACACTACATCCGGTGG 58.777 50.000 0.00 0.00 37.72 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
49 50 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
50 51 5.427036 CTTTATTTATAAAGCGGGGCGAA 57.573 39.130 8.78 0.00 41.69 4.70
62 63 9.237187 TGACTGTGATGGTTTGCTTTATTTATA 57.763 29.630 0.00 0.00 0.00 0.98
63 64 8.028938 GTGACTGTGATGGTTTGCTTTATTTAT 58.971 33.333 0.00 0.00 0.00 1.40
64 65 7.013750 TGTGACTGTGATGGTTTGCTTTATTTA 59.986 33.333 0.00 0.00 0.00 1.40
65 66 6.183360 TGTGACTGTGATGGTTTGCTTTATTT 60.183 34.615 0.00 0.00 0.00 1.40
66 67 5.301551 TGTGACTGTGATGGTTTGCTTTATT 59.698 36.000 0.00 0.00 0.00 1.40
67 68 4.826733 TGTGACTGTGATGGTTTGCTTTAT 59.173 37.500 0.00 0.00 0.00 1.40
68 69 4.203226 TGTGACTGTGATGGTTTGCTTTA 58.797 39.130 0.00 0.00 0.00 1.85
69 70 3.023119 TGTGACTGTGATGGTTTGCTTT 58.977 40.909 0.00 0.00 0.00 3.51
70 71 2.653726 TGTGACTGTGATGGTTTGCTT 58.346 42.857 0.00 0.00 0.00 3.91
71 72 2.346766 TGTGACTGTGATGGTTTGCT 57.653 45.000 0.00 0.00 0.00 3.91
72 73 3.181487 ACTTTGTGACTGTGATGGTTTGC 60.181 43.478 0.00 0.00 0.00 3.68
73 74 4.637483 ACTTTGTGACTGTGATGGTTTG 57.363 40.909 0.00 0.00 0.00 2.93
74 75 5.650266 TGTTACTTTGTGACTGTGATGGTTT 59.350 36.000 0.00 0.00 0.00 3.27
75 76 5.065988 GTGTTACTTTGTGACTGTGATGGTT 59.934 40.000 0.00 0.00 0.00 3.67
76 77 4.574828 GTGTTACTTTGTGACTGTGATGGT 59.425 41.667 0.00 0.00 0.00 3.55
77 78 4.574421 TGTGTTACTTTGTGACTGTGATGG 59.426 41.667 0.00 0.00 0.00 3.51
78 79 5.733226 TGTGTTACTTTGTGACTGTGATG 57.267 39.130 0.00 0.00 0.00 3.07
79 80 7.715249 ACTTATGTGTTACTTTGTGACTGTGAT 59.285 33.333 0.00 0.00 0.00 3.06
80 81 7.045416 ACTTATGTGTTACTTTGTGACTGTGA 58.955 34.615 0.00 0.00 0.00 3.58
81 82 7.246674 ACTTATGTGTTACTTTGTGACTGTG 57.753 36.000 0.00 0.00 0.00 3.66
82 83 7.551262 TGAACTTATGTGTTACTTTGTGACTGT 59.449 33.333 0.00 0.00 0.00 3.55
83 84 7.850982 GTGAACTTATGTGTTACTTTGTGACTG 59.149 37.037 0.00 0.00 0.00 3.51
84 85 7.012044 GGTGAACTTATGTGTTACTTTGTGACT 59.988 37.037 0.00 0.00 0.00 3.41
85 86 7.130269 GGTGAACTTATGTGTTACTTTGTGAC 58.870 38.462 0.00 0.00 0.00 3.67
86 87 6.261381 GGGTGAACTTATGTGTTACTTTGTGA 59.739 38.462 0.00 0.00 0.00 3.58
87 88 6.038825 TGGGTGAACTTATGTGTTACTTTGTG 59.961 38.462 0.00 0.00 0.00 3.33
88 89 6.038936 GTGGGTGAACTTATGTGTTACTTTGT 59.961 38.462 0.00 0.00 0.00 2.83
89 90 6.038825 TGTGGGTGAACTTATGTGTTACTTTG 59.961 38.462 0.00 0.00 0.00 2.77
90 91 6.038936 GTGTGGGTGAACTTATGTGTTACTTT 59.961 38.462 0.00 0.00 0.00 2.66
91 92 5.529800 GTGTGGGTGAACTTATGTGTTACTT 59.470 40.000 0.00 0.00 0.00 2.24
92 93 5.061179 GTGTGGGTGAACTTATGTGTTACT 58.939 41.667 0.00 0.00 0.00 2.24
93 94 4.817464 TGTGTGGGTGAACTTATGTGTTAC 59.183 41.667 0.00 0.00 0.00 2.50
94 95 4.817464 GTGTGTGGGTGAACTTATGTGTTA 59.183 41.667 0.00 0.00 0.00 2.41
95 96 3.630312 GTGTGTGGGTGAACTTATGTGTT 59.370 43.478 0.00 0.00 0.00 3.32
96 97 3.211045 GTGTGTGGGTGAACTTATGTGT 58.789 45.455 0.00 0.00 0.00 3.72
97 98 3.210227 TGTGTGTGGGTGAACTTATGTG 58.790 45.455 0.00 0.00 0.00 3.21
98 99 3.569194 TGTGTGTGGGTGAACTTATGT 57.431 42.857 0.00 0.00 0.00 2.29
99 100 3.191162 CCATGTGTGTGGGTGAACTTATG 59.809 47.826 0.00 0.00 35.55 1.90
100 101 3.073798 TCCATGTGTGTGGGTGAACTTAT 59.926 43.478 0.00 0.00 39.80 1.73
101 102 2.439880 TCCATGTGTGTGGGTGAACTTA 59.560 45.455 0.00 0.00 39.80 2.24
102 103 1.214175 TCCATGTGTGTGGGTGAACTT 59.786 47.619 0.00 0.00 39.80 2.66
103 104 0.843309 TCCATGTGTGTGGGTGAACT 59.157 50.000 0.00 0.00 39.80 3.01
104 105 1.238439 CTCCATGTGTGTGGGTGAAC 58.762 55.000 0.00 0.00 39.80 3.18
105 106 0.110295 CCTCCATGTGTGTGGGTGAA 59.890 55.000 0.00 0.00 39.80 3.18
106 107 0.766288 TCCTCCATGTGTGTGGGTGA 60.766 55.000 0.00 0.00 39.80 4.02
107 108 0.329261 ATCCTCCATGTGTGTGGGTG 59.671 55.000 0.00 0.00 39.80 4.61
108 109 0.620556 GATCCTCCATGTGTGTGGGT 59.379 55.000 0.00 0.00 39.80 4.51
109 110 0.462581 CGATCCTCCATGTGTGTGGG 60.463 60.000 0.00 0.00 39.80 4.61
110 111 1.091771 GCGATCCTCCATGTGTGTGG 61.092 60.000 0.00 0.00 40.76 4.17
111 112 0.391528 TGCGATCCTCCATGTGTGTG 60.392 55.000 0.00 0.00 0.00 3.82
112 113 0.391661 GTGCGATCCTCCATGTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
113 114 0.391528 TGTGCGATCCTCCATGTGTG 60.392 55.000 0.00 0.00 0.00 3.82
114 115 0.324614 TTGTGCGATCCTCCATGTGT 59.675 50.000 0.00 0.00 0.00 3.72
115 116 0.729116 GTTGTGCGATCCTCCATGTG 59.271 55.000 0.00 0.00 0.00 3.21
116 117 0.324614 TGTTGTGCGATCCTCCATGT 59.675 50.000 0.00 0.00 0.00 3.21
117 118 1.671979 ATGTTGTGCGATCCTCCATG 58.328 50.000 0.00 0.00 0.00 3.66
118 119 2.700371 TCTATGTTGTGCGATCCTCCAT 59.300 45.455 0.00 0.00 0.00 3.41
119 120 2.101415 CTCTATGTTGTGCGATCCTCCA 59.899 50.000 0.00 0.00 0.00 3.86
120 121 2.101582 ACTCTATGTTGTGCGATCCTCC 59.898 50.000 0.00 0.00 0.00 4.30
121 122 3.444703 ACTCTATGTTGTGCGATCCTC 57.555 47.619 0.00 0.00 0.00 3.71
122 123 3.699538 TGTACTCTATGTTGTGCGATCCT 59.300 43.478 0.00 0.00 0.00 3.24
123 124 4.041740 TGTACTCTATGTTGTGCGATCC 57.958 45.455 0.00 0.00 0.00 3.36
124 125 5.340803 TCTTGTACTCTATGTTGTGCGATC 58.659 41.667 0.00 0.00 0.00 3.69
125 126 5.324784 TCTTGTACTCTATGTTGTGCGAT 57.675 39.130 0.00 0.00 0.00 4.58
126 127 4.380550 CCTCTTGTACTCTATGTTGTGCGA 60.381 45.833 0.00 0.00 0.00 5.10
127 128 3.859961 CCTCTTGTACTCTATGTTGTGCG 59.140 47.826 0.00 0.00 0.00 5.34
128 129 4.184629 CCCTCTTGTACTCTATGTTGTGC 58.815 47.826 0.00 0.00 0.00 4.57
129 130 5.407407 ACCCTCTTGTACTCTATGTTGTG 57.593 43.478 0.00 0.00 0.00 3.33
130 131 5.780793 AGAACCCTCTTGTACTCTATGTTGT 59.219 40.000 0.00 0.00 0.00 3.32
131 132 6.102663 CAGAACCCTCTTGTACTCTATGTTG 58.897 44.000 0.00 0.00 0.00 3.33
132 133 5.337652 GCAGAACCCTCTTGTACTCTATGTT 60.338 44.000 0.00 0.00 0.00 2.71
133 134 4.160626 GCAGAACCCTCTTGTACTCTATGT 59.839 45.833 0.00 0.00 0.00 2.29
134 135 4.404073 AGCAGAACCCTCTTGTACTCTATG 59.596 45.833 0.00 0.00 0.00 2.23
135 136 4.404073 CAGCAGAACCCTCTTGTACTCTAT 59.596 45.833 0.00 0.00 0.00 1.98
136 137 3.764434 CAGCAGAACCCTCTTGTACTCTA 59.236 47.826 0.00 0.00 0.00 2.43
137 138 2.564947 CAGCAGAACCCTCTTGTACTCT 59.435 50.000 0.00 0.00 0.00 3.24
138 139 2.563179 TCAGCAGAACCCTCTTGTACTC 59.437 50.000 0.00 0.00 0.00 2.59
139 140 2.609747 TCAGCAGAACCCTCTTGTACT 58.390 47.619 0.00 0.00 0.00 2.73
140 141 3.330267 CTTCAGCAGAACCCTCTTGTAC 58.670 50.000 0.00 0.00 0.00 2.90
141 142 2.303022 CCTTCAGCAGAACCCTCTTGTA 59.697 50.000 0.00 0.00 0.00 2.41
142 143 1.072965 CCTTCAGCAGAACCCTCTTGT 59.927 52.381 0.00 0.00 0.00 3.16
143 144 1.818642 CCTTCAGCAGAACCCTCTTG 58.181 55.000 0.00 0.00 0.00 3.02
144 145 0.037447 GCCTTCAGCAGAACCCTCTT 59.963 55.000 0.00 0.00 42.97 2.85
145 146 1.682257 GCCTTCAGCAGAACCCTCT 59.318 57.895 0.00 0.00 42.97 3.69
146 147 4.310288 GCCTTCAGCAGAACCCTC 57.690 61.111 0.00 0.00 42.97 4.30
156 157 1.311859 TTGTTGAGCTGTGCCTTCAG 58.688 50.000 0.00 0.00 38.35 3.02
157 158 1.405105 GTTTGTTGAGCTGTGCCTTCA 59.595 47.619 0.00 0.00 0.00 3.02
158 159 1.269257 GGTTTGTTGAGCTGTGCCTTC 60.269 52.381 0.00 0.00 0.00 3.46
159 160 0.746659 GGTTTGTTGAGCTGTGCCTT 59.253 50.000 0.00 0.00 0.00 4.35
160 161 1.109323 GGGTTTGTTGAGCTGTGCCT 61.109 55.000 0.00 0.00 0.00 4.75
161 162 1.109323 AGGGTTTGTTGAGCTGTGCC 61.109 55.000 0.00 0.00 0.00 5.01
162 163 0.031178 CAGGGTTTGTTGAGCTGTGC 59.969 55.000 0.00 0.00 0.00 4.57
163 164 1.679139 TCAGGGTTTGTTGAGCTGTG 58.321 50.000 0.00 0.00 0.00 3.66
164 165 2.435372 TTCAGGGTTTGTTGAGCTGT 57.565 45.000 0.00 0.00 0.00 4.40
165 166 3.799281 TTTTCAGGGTTTGTTGAGCTG 57.201 42.857 0.00 0.00 0.00 4.24
166 167 3.960102 TCATTTTCAGGGTTTGTTGAGCT 59.040 39.130 0.00 0.00 0.00 4.09
167 168 4.320608 TCATTTTCAGGGTTTGTTGAGC 57.679 40.909 0.00 0.00 0.00 4.26
168 169 6.237808 CGTTTTCATTTTCAGGGTTTGTTGAG 60.238 38.462 0.00 0.00 0.00 3.02
169 170 5.578727 CGTTTTCATTTTCAGGGTTTGTTGA 59.421 36.000 0.00 0.00 0.00 3.18
170 171 5.578727 TCGTTTTCATTTTCAGGGTTTGTTG 59.421 36.000 0.00 0.00 0.00 3.33
171 172 5.725362 TCGTTTTCATTTTCAGGGTTTGTT 58.275 33.333 0.00 0.00 0.00 2.83
172 173 5.331876 TCGTTTTCATTTTCAGGGTTTGT 57.668 34.783 0.00 0.00 0.00 2.83
173 174 6.654793 TTTCGTTTTCATTTTCAGGGTTTG 57.345 33.333 0.00 0.00 0.00 2.93
174 175 6.183360 CGTTTTCGTTTTCATTTTCAGGGTTT 60.183 34.615 0.00 0.00 38.65 3.27
175 176 5.289917 CGTTTTCGTTTTCATTTTCAGGGTT 59.710 36.000 0.00 0.00 38.65 4.11
176 177 4.801516 CGTTTTCGTTTTCATTTTCAGGGT 59.198 37.500 0.00 0.00 38.65 4.34
177 178 5.038033 TCGTTTTCGTTTTCATTTTCAGGG 58.962 37.500 0.00 0.00 44.46 4.45
178 179 6.291585 CCTTCGTTTTCGTTTTCATTTTCAGG 60.292 38.462 0.00 0.00 44.46 3.86
179 180 6.627274 CCTTCGTTTTCGTTTTCATTTTCAG 58.373 36.000 0.00 0.00 44.46 3.02
180 181 5.004916 GCCTTCGTTTTCGTTTTCATTTTCA 59.995 36.000 0.00 0.00 44.46 2.69
181 182 5.004916 TGCCTTCGTTTTCGTTTTCATTTTC 59.995 36.000 0.00 0.00 44.46 2.29
182 183 4.865365 TGCCTTCGTTTTCGTTTTCATTTT 59.135 33.333 0.00 0.00 44.46 1.82
183 184 4.425520 TGCCTTCGTTTTCGTTTTCATTT 58.574 34.783 0.00 0.00 44.46 2.32
184 185 4.035278 TGCCTTCGTTTTCGTTTTCATT 57.965 36.364 0.00 0.00 44.46 2.57
185 186 3.314080 TCTGCCTTCGTTTTCGTTTTCAT 59.686 39.130 0.00 0.00 44.46 2.57
186 187 2.678836 TCTGCCTTCGTTTTCGTTTTCA 59.321 40.909 0.00 0.00 44.46 2.69
187 188 3.328237 TCTGCCTTCGTTTTCGTTTTC 57.672 42.857 0.00 0.00 44.46 2.29
188 189 3.982576 ATCTGCCTTCGTTTTCGTTTT 57.017 38.095 0.00 0.00 44.46 2.43
189 190 5.008316 AGTTTATCTGCCTTCGTTTTCGTTT 59.992 36.000 0.00 0.00 44.46 3.60
190 191 4.514066 AGTTTATCTGCCTTCGTTTTCGTT 59.486 37.500 0.00 0.00 44.46 3.85
191 192 4.062991 AGTTTATCTGCCTTCGTTTTCGT 58.937 39.130 0.00 0.00 44.46 3.85
192 193 4.394795 CAGTTTATCTGCCTTCGTTTTCG 58.605 43.478 0.00 0.00 39.90 3.46
204 205 6.373779 AGTGAAAATCGTTGCAGTTTATCTG 58.626 36.000 0.00 0.00 46.12 2.90
205 206 6.560253 AGTGAAAATCGTTGCAGTTTATCT 57.440 33.333 0.00 0.00 0.00 1.98
206 207 8.722342 TTTAGTGAAAATCGTTGCAGTTTATC 57.278 30.769 0.00 0.00 28.17 1.75
207 208 9.180678 CTTTTAGTGAAAATCGTTGCAGTTTAT 57.819 29.630 0.00 0.00 34.08 1.40
208 209 7.646130 CCTTTTAGTGAAAATCGTTGCAGTTTA 59.354 33.333 0.00 0.00 34.08 2.01
209 210 6.475402 CCTTTTAGTGAAAATCGTTGCAGTTT 59.525 34.615 0.00 0.00 34.08 2.66
210 211 5.977129 CCTTTTAGTGAAAATCGTTGCAGTT 59.023 36.000 0.00 0.00 34.08 3.16
211 212 5.298276 TCCTTTTAGTGAAAATCGTTGCAGT 59.702 36.000 0.00 0.00 34.08 4.40
212 213 5.757886 TCCTTTTAGTGAAAATCGTTGCAG 58.242 37.500 0.00 0.00 34.08 4.41
213 214 5.759506 TCCTTTTAGTGAAAATCGTTGCA 57.240 34.783 0.00 0.00 34.08 4.08
214 215 7.458038 TTTTCCTTTTAGTGAAAATCGTTGC 57.542 32.000 0.00 0.00 35.99 4.17
215 216 9.083080 AGTTTTTCCTTTTAGTGAAAATCGTTG 57.917 29.630 0.00 0.00 39.45 4.10
216 217 9.083080 CAGTTTTTCCTTTTAGTGAAAATCGTT 57.917 29.630 0.00 0.00 39.45 3.85
217 218 7.704899 CCAGTTTTTCCTTTTAGTGAAAATCGT 59.295 33.333 0.00 0.00 39.45 3.73
218 219 7.306574 GCCAGTTTTTCCTTTTAGTGAAAATCG 60.307 37.037 0.00 0.00 39.45 3.34
219 220 7.494298 TGCCAGTTTTTCCTTTTAGTGAAAATC 59.506 33.333 0.00 0.00 39.45 2.17
220 221 7.334858 TGCCAGTTTTTCCTTTTAGTGAAAAT 58.665 30.769 0.00 0.00 39.45 1.82
221 222 6.702329 TGCCAGTTTTTCCTTTTAGTGAAAA 58.298 32.000 0.00 0.00 38.36 2.29
222 223 6.287589 TGCCAGTTTTTCCTTTTAGTGAAA 57.712 33.333 0.00 0.00 0.00 2.69
223 224 5.923733 TGCCAGTTTTTCCTTTTAGTGAA 57.076 34.783 0.00 0.00 0.00 3.18
224 225 5.923733 TTGCCAGTTTTTCCTTTTAGTGA 57.076 34.783 0.00 0.00 0.00 3.41
225 226 5.466393 CCATTGCCAGTTTTTCCTTTTAGTG 59.534 40.000 0.00 0.00 0.00 2.74
226 227 5.365314 TCCATTGCCAGTTTTTCCTTTTAGT 59.635 36.000 0.00 0.00 0.00 2.24
227 228 5.852827 TCCATTGCCAGTTTTTCCTTTTAG 58.147 37.500 0.00 0.00 0.00 1.85
228 229 5.878406 TCCATTGCCAGTTTTTCCTTTTA 57.122 34.783 0.00 0.00 0.00 1.52
229 230 4.769345 TCCATTGCCAGTTTTTCCTTTT 57.231 36.364 0.00 0.00 0.00 2.27
230 231 4.769345 TTCCATTGCCAGTTTTTCCTTT 57.231 36.364 0.00 0.00 0.00 3.11
231 232 4.347583 TCATTCCATTGCCAGTTTTTCCTT 59.652 37.500 0.00 0.00 0.00 3.36
232 233 3.903090 TCATTCCATTGCCAGTTTTTCCT 59.097 39.130 0.00 0.00 0.00 3.36
233 234 4.270245 TCATTCCATTGCCAGTTTTTCC 57.730 40.909 0.00 0.00 0.00 3.13
234 235 5.121142 CACATCATTCCATTGCCAGTTTTTC 59.879 40.000 0.00 0.00 0.00 2.29
235 236 4.998672 CACATCATTCCATTGCCAGTTTTT 59.001 37.500 0.00 0.00 0.00 1.94
236 237 4.040706 ACACATCATTCCATTGCCAGTTTT 59.959 37.500 0.00 0.00 0.00 2.43
237 238 3.579586 ACACATCATTCCATTGCCAGTTT 59.420 39.130 0.00 0.00 0.00 2.66
238 239 3.056393 CACACATCATTCCATTGCCAGTT 60.056 43.478 0.00 0.00 0.00 3.16
239 240 2.494471 CACACATCATTCCATTGCCAGT 59.506 45.455 0.00 0.00 0.00 4.00
240 241 2.737359 GCACACATCATTCCATTGCCAG 60.737 50.000 0.00 0.00 0.00 4.85
241 242 1.205179 GCACACATCATTCCATTGCCA 59.795 47.619 0.00 0.00 0.00 4.92
242 243 1.205179 TGCACACATCATTCCATTGCC 59.795 47.619 0.00 0.00 0.00 4.52
243 244 2.658373 TGCACACATCATTCCATTGC 57.342 45.000 0.00 0.00 0.00 3.56
244 245 5.062934 GTCAATTGCACACATCATTCCATTG 59.937 40.000 0.00 0.00 0.00 2.82
245 246 5.046878 AGTCAATTGCACACATCATTCCATT 60.047 36.000 0.00 0.00 0.00 3.16
246 247 4.464951 AGTCAATTGCACACATCATTCCAT 59.535 37.500 0.00 0.00 0.00 3.41
247 248 3.827876 AGTCAATTGCACACATCATTCCA 59.172 39.130 0.00 0.00 0.00 3.53
248 249 4.445452 AGTCAATTGCACACATCATTCC 57.555 40.909 0.00 0.00 0.00 3.01
249 250 5.693104 ACAAAGTCAATTGCACACATCATTC 59.307 36.000 0.00 0.00 33.52 2.67
250 251 5.464057 CACAAAGTCAATTGCACACATCATT 59.536 36.000 0.00 0.00 33.52 2.57
251 252 4.986034 CACAAAGTCAATTGCACACATCAT 59.014 37.500 0.00 0.00 33.52 2.45
252 253 4.361420 CACAAAGTCAATTGCACACATCA 58.639 39.130 0.00 0.00 33.52 3.07
253 254 3.737266 CCACAAAGTCAATTGCACACATC 59.263 43.478 0.00 0.00 33.52 3.06
254 255 3.384146 TCCACAAAGTCAATTGCACACAT 59.616 39.130 0.00 0.00 33.52 3.21
255 256 2.757314 TCCACAAAGTCAATTGCACACA 59.243 40.909 0.00 0.00 33.52 3.72
256 257 3.181487 ACTCCACAAAGTCAATTGCACAC 60.181 43.478 0.00 0.00 33.52 3.82
257 258 3.023119 ACTCCACAAAGTCAATTGCACA 58.977 40.909 0.00 0.00 33.52 4.57
258 259 3.715628 ACTCCACAAAGTCAATTGCAC 57.284 42.857 0.00 0.29 33.52 4.57
259 260 3.698539 TCAACTCCACAAAGTCAATTGCA 59.301 39.130 0.00 0.00 33.52 4.08
260 261 4.305989 TCAACTCCACAAAGTCAATTGC 57.694 40.909 0.00 0.00 33.52 3.56
261 262 6.323203 AGATCAACTCCACAAAGTCAATTG 57.677 37.500 0.00 0.00 36.37 2.32
262 263 6.656693 CCTAGATCAACTCCACAAAGTCAATT 59.343 38.462 0.00 0.00 0.00 2.32
263 264 6.176183 CCTAGATCAACTCCACAAAGTCAAT 58.824 40.000 0.00 0.00 0.00 2.57
264 265 5.513094 CCCTAGATCAACTCCACAAAGTCAA 60.513 44.000 0.00 0.00 0.00 3.18
265 266 4.020218 CCCTAGATCAACTCCACAAAGTCA 60.020 45.833 0.00 0.00 0.00 3.41
266 267 4.223032 TCCCTAGATCAACTCCACAAAGTC 59.777 45.833 0.00 0.00 0.00 3.01
267 268 4.168101 TCCCTAGATCAACTCCACAAAGT 58.832 43.478 0.00 0.00 0.00 2.66
268 269 4.383552 CCTCCCTAGATCAACTCCACAAAG 60.384 50.000 0.00 0.00 0.00 2.77
269 270 3.519510 CCTCCCTAGATCAACTCCACAAA 59.480 47.826 0.00 0.00 0.00 2.83
270 271 3.107601 CCTCCCTAGATCAACTCCACAA 58.892 50.000 0.00 0.00 0.00 3.33
271 272 2.044492 ACCTCCCTAGATCAACTCCACA 59.956 50.000 0.00 0.00 0.00 4.17
272 273 2.432510 CACCTCCCTAGATCAACTCCAC 59.567 54.545 0.00 0.00 0.00 4.02
273 274 2.752030 CACCTCCCTAGATCAACTCCA 58.248 52.381 0.00 0.00 0.00 3.86
274 275 1.414550 GCACCTCCCTAGATCAACTCC 59.585 57.143 0.00 0.00 0.00 3.85
275 276 2.393646 AGCACCTCCCTAGATCAACTC 58.606 52.381 0.00 0.00 0.00 3.01
276 277 2.559381 AGCACCTCCCTAGATCAACT 57.441 50.000 0.00 0.00 0.00 3.16
277 278 4.406003 TCTTTAGCACCTCCCTAGATCAAC 59.594 45.833 0.00 0.00 0.00 3.18
278 279 4.620723 TCTTTAGCACCTCCCTAGATCAA 58.379 43.478 0.00 0.00 0.00 2.57
279 280 4.265856 TCTTTAGCACCTCCCTAGATCA 57.734 45.455 0.00 0.00 0.00 2.92
280 281 4.591072 ACATCTTTAGCACCTCCCTAGATC 59.409 45.833 0.00 0.00 0.00 2.75
281 282 4.346418 CACATCTTTAGCACCTCCCTAGAT 59.654 45.833 0.00 0.00 0.00 1.98
282 283 3.706594 CACATCTTTAGCACCTCCCTAGA 59.293 47.826 0.00 0.00 0.00 2.43
283 284 3.452627 ACACATCTTTAGCACCTCCCTAG 59.547 47.826 0.00 0.00 0.00 3.02
284 285 3.197766 CACACATCTTTAGCACCTCCCTA 59.802 47.826 0.00 0.00 0.00 3.53
285 286 2.026822 CACACATCTTTAGCACCTCCCT 60.027 50.000 0.00 0.00 0.00 4.20
286 287 2.359900 CACACATCTTTAGCACCTCCC 58.640 52.381 0.00 0.00 0.00 4.30
287 288 1.740025 GCACACATCTTTAGCACCTCC 59.260 52.381 0.00 0.00 0.00 4.30
288 289 1.394917 CGCACACATCTTTAGCACCTC 59.605 52.381 0.00 0.00 0.00 3.85
289 290 1.442769 CGCACACATCTTTAGCACCT 58.557 50.000 0.00 0.00 0.00 4.00
290 291 0.179189 GCGCACACATCTTTAGCACC 60.179 55.000 0.30 0.00 0.00 5.01
291 292 0.179189 GGCGCACACATCTTTAGCAC 60.179 55.000 10.83 0.00 0.00 4.40
292 293 1.305219 GGGCGCACACATCTTTAGCA 61.305 55.000 10.83 0.00 0.00 3.49
293 294 1.305219 TGGGCGCACACATCTTTAGC 61.305 55.000 9.15 0.00 0.00 3.09
294 295 1.064505 CATGGGCGCACACATCTTTAG 59.935 52.381 18.24 0.00 0.00 1.85
295 296 1.093972 CATGGGCGCACACATCTTTA 58.906 50.000 18.24 0.00 0.00 1.85
296 297 1.885157 CATGGGCGCACACATCTTT 59.115 52.632 18.24 0.00 0.00 2.52
297 298 2.703798 GCATGGGCGCACACATCTT 61.704 57.895 18.24 0.00 0.00 2.40
298 299 3.136123 GCATGGGCGCACACATCT 61.136 61.111 18.24 0.00 0.00 2.90
299 300 2.777972 ATGCATGGGCGCACACATC 61.778 57.895 18.24 7.71 46.56 3.06
300 301 2.756691 ATGCATGGGCGCACACAT 60.757 55.556 18.24 13.10 46.56 3.21
301 302 3.750155 CATGCATGGGCGCACACA 61.750 61.111 18.24 10.76 46.56 3.72
304 305 4.865761 CTGCATGCATGGGCGCAC 62.866 66.667 27.34 6.04 46.56 5.34
308 309 3.912907 GAGCCTGCATGCATGGGC 61.913 66.667 33.01 33.01 44.38 5.36
309 310 3.224324 GGAGCCTGCATGCATGGG 61.224 66.667 27.34 23.59 0.00 4.00
310 311 2.441348 TGGAGCCTGCATGCATGG 60.441 61.111 27.34 23.53 0.00 3.66
311 312 1.035385 TTCTGGAGCCTGCATGCATG 61.035 55.000 22.97 22.70 0.00 4.06
312 313 0.323999 TTTCTGGAGCCTGCATGCAT 60.324 50.000 22.97 6.38 0.00 3.96
313 314 0.963856 CTTTCTGGAGCCTGCATGCA 60.964 55.000 21.29 21.29 0.00 3.96
314 315 0.964358 ACTTTCTGGAGCCTGCATGC 60.964 55.000 11.82 11.82 0.00 4.06
315 316 0.809385 CACTTTCTGGAGCCTGCATG 59.191 55.000 0.00 0.00 0.00 4.06
316 317 0.323178 CCACTTTCTGGAGCCTGCAT 60.323 55.000 0.00 0.00 43.95 3.96
317 318 1.073722 CCACTTTCTGGAGCCTGCA 59.926 57.895 0.00 0.00 43.95 4.41
318 319 1.376466 TCCACTTTCTGGAGCCTGC 59.624 57.895 0.00 0.00 44.99 4.85
325 326 2.234296 AGGCCCCTCCACTTTCTGG 61.234 63.158 0.00 0.00 42.29 3.86
326 327 1.001641 CAGGCCCCTCCACTTTCTG 60.002 63.158 0.00 0.00 37.29 3.02
327 328 1.068352 AACAGGCCCCTCCACTTTCT 61.068 55.000 0.00 0.00 37.29 2.52
328 329 0.696501 TAACAGGCCCCTCCACTTTC 59.303 55.000 0.00 0.00 37.29 2.62
329 330 0.698818 CTAACAGGCCCCTCCACTTT 59.301 55.000 0.00 0.00 37.29 2.66
330 331 1.208165 CCTAACAGGCCCCTCCACTT 61.208 60.000 0.00 0.00 37.29 3.16
331 332 1.616628 CCTAACAGGCCCCTCCACT 60.617 63.158 0.00 0.00 37.29 4.00
332 333 1.205460 TTCCTAACAGGCCCCTCCAC 61.205 60.000 0.00 0.00 34.61 4.02
333 334 0.253630 ATTCCTAACAGGCCCCTCCA 60.254 55.000 0.00 0.00 34.61 3.86
334 335 1.815757 TATTCCTAACAGGCCCCTCC 58.184 55.000 0.00 0.00 34.61 4.30
335 336 3.945640 TTTATTCCTAACAGGCCCCTC 57.054 47.619 0.00 0.00 34.61 4.30
336 337 4.899898 ATTTTATTCCTAACAGGCCCCT 57.100 40.909 0.00 0.00 34.61 4.79
337 338 7.612065 ATTAATTTTATTCCTAACAGGCCCC 57.388 36.000 0.00 0.00 34.61 5.80
385 386 3.251571 GGACACAGAACCGTCTAATGAC 58.748 50.000 0.00 0.00 39.70 3.06
399 400 2.262915 GAGAGGCGGTGGACACAG 59.737 66.667 4.69 1.31 0.00 3.66
466 469 0.373716 CAGTCGCCAATTAAGACGGC 59.626 55.000 3.12 3.12 42.64 5.68
470 473 4.245660 CTCTCAACAGTCGCCAATTAAGA 58.754 43.478 0.00 0.00 0.00 2.10
680 684 2.932234 CGCCCGAGGACTCTGTTGT 61.932 63.158 0.00 0.00 0.00 3.32
827 831 7.554118 GGATCTTGTATGTTTTCTTCTGATCCA 59.446 37.037 0.00 0.00 43.15 3.41
1598 3151 6.463995 AAAATGCAGACCAAACAAAGTCTA 57.536 33.333 0.00 0.00 41.38 2.59
1726 3280 7.224362 TGCAAGAAAAATATATTTCAATGGCCG 59.776 33.333 11.08 0.00 40.89 6.13
1898 3455 9.740710 AATAGCACTTTGAAGGTAGTAATCTTT 57.259 29.630 0.00 0.00 0.00 2.52
1986 3543 7.944729 ATAGTGGATAGTCTGCAAAATTTGT 57.055 32.000 7.60 0.00 0.00 2.83
2155 3713 2.673258 TGAAGATAGCCACCGGATGTA 58.327 47.619 9.46 0.00 0.00 2.29
2251 3812 7.840342 TTTAGTGAACAACAACAATTGCATT 57.160 28.000 5.05 0.00 32.47 3.56
2253 3814 7.658179 TTTTTAGTGAACAACAACAATTGCA 57.342 28.000 5.05 0.00 32.47 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.