Multiple sequence alignment - TraesCS5B01G143600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G143600 chr5B 100.000 3521 0 0 1 3521 271109074 271112594 0.000000e+00 6503.0
1 TraesCS5B01G143600 chr5B 86.547 223 22 8 1071 1290 271140957 271141174 4.540000e-59 239.0
2 TraesCS5B01G143600 chr5B 79.208 101 21 0 372 472 661611157 661611257 1.750000e-08 71.3
3 TraesCS5B01G143600 chr5B 88.679 53 6 0 109 161 51959365 51959417 8.160000e-07 65.8
4 TraesCS5B01G143600 chr5D 93.414 1488 64 20 1694 3174 233748342 233746882 0.000000e+00 2174.0
5 TraesCS5B01G143600 chr5D 94.484 979 39 8 699 1664 233749319 233748343 0.000000e+00 1495.0
6 TraesCS5B01G143600 chr5D 95.935 492 20 0 211 702 233751618 233751127 0.000000e+00 798.0
7 TraesCS5B01G143600 chr5D 91.026 234 16 4 1 230 233751902 233751670 9.490000e-81 311.0
8 TraesCS5B01G143600 chr5D 86.547 223 22 8 1071 1290 233742502 233742285 4.540000e-59 239.0
9 TraesCS5B01G143600 chr5D 93.043 115 8 0 3335 3449 233746882 233746768 6.040000e-38 169.0
10 TraesCS5B01G143600 chr5D 86.239 109 14 1 3229 3336 374635038 374635146 2.220000e-22 117.0
11 TraesCS5B01G143600 chr5A 92.184 1497 51 28 1694 3176 321002010 321003454 0.000000e+00 2056.0
12 TraesCS5B01G143600 chr5A 92.403 1053 44 17 633 1664 321000972 321002009 0.000000e+00 1469.0
13 TraesCS5B01G143600 chr5A 90.058 342 33 1 208 549 320998999 320999339 3.230000e-120 442.0
14 TraesCS5B01G143600 chr5A 89.305 187 17 3 1105 1290 321019929 321020113 7.600000e-57 231.0
15 TraesCS5B01G143600 chr5A 92.174 115 4 1 3335 3449 321003451 321003560 1.310000e-34 158.0
16 TraesCS5B01G143600 chr5A 91.358 81 6 1 538 617 321000903 321000983 3.720000e-20 110.0
17 TraesCS5B01G143600 chr1B 99.379 161 1 0 3175 3335 683240160 683240320 3.440000e-75 292.0
18 TraesCS5B01G143600 chr3B 99.367 158 1 0 3178 3335 780341179 780341022 1.600000e-73 287.0
19 TraesCS5B01G143600 chr3B 82.667 150 13 6 2607 2756 49827904 49827768 1.720000e-23 121.0
20 TraesCS5B01G143600 chr2B 80.095 422 50 16 2341 2756 569501760 569501367 2.070000e-72 283.0
21 TraesCS5B01G143600 chr2B 81.447 318 45 7 2346 2657 30523047 30522738 7.550000e-62 248.0
22 TraesCS5B01G143600 chr4D 95.906 171 7 0 1825 1995 361163905 361164075 9.630000e-71 278.0
23 TraesCS5B01G143600 chr4D 94.152 171 10 0 1825 1995 361190334 361190504 9.690000e-66 261.0
24 TraesCS5B01G143600 chr4D 89.815 108 8 1 1560 1664 361190126 361190233 6.130000e-28 135.0
25 TraesCS5B01G143600 chr4D 87.850 107 7 5 1694 1800 361163805 361163905 1.720000e-23 121.0
26 TraesCS5B01G143600 chr4D 87.850 107 7 5 1694 1800 361190234 361190334 1.720000e-23 121.0
27 TraesCS5B01G143600 chr6A 84.281 299 16 6 1694 1992 29402848 29403115 2.700000e-66 263.0
28 TraesCS5B01G143600 chr6A 94.643 168 9 0 1825 1992 612718429 612718596 9.690000e-66 261.0
29 TraesCS5B01G143600 chr6A 86.702 188 23 2 2568 2755 2711074 2710889 1.280000e-49 207.0
30 TraesCS5B01G143600 chr6A 96.364 55 2 0 3465 3519 100365243 100365189 1.350000e-14 91.6
31 TraesCS5B01G143600 chr6A 91.935 62 5 0 3458 3519 596518958 596518897 1.740000e-13 87.9
32 TraesCS5B01G143600 chr6A 87.931 58 7 0 105 162 559016933 559016876 6.310000e-08 69.4
33 TraesCS5B01G143600 chr7D 93.567 171 11 0 1825 1995 592269816 592269646 4.510000e-64 255.0
34 TraesCS5B01G143600 chr7D 93.333 45 3 0 259 303 531651536 531651492 2.270000e-07 67.6
35 TraesCS5B01G143600 chr7B 94.048 168 10 0 1825 1992 116071423 116071590 4.510000e-64 255.0
36 TraesCS5B01G143600 chr7B 88.235 102 6 5 1699 1800 116071328 116071423 2.220000e-22 117.0
37 TraesCS5B01G143600 chr6B 83.278 299 19 14 1694 1992 49502537 49502804 2.710000e-61 246.0
38 TraesCS5B01G143600 chrUn 92.424 66 5 0 3454 3519 35287704 35287639 1.040000e-15 95.3
39 TraesCS5B01G143600 chrUn 92.424 66 5 0 3454 3519 278998066 278998001 1.040000e-15 95.3
40 TraesCS5B01G143600 chrUn 92.424 66 5 0 3454 3519 280243037 280242972 1.040000e-15 95.3
41 TraesCS5B01G143600 chrUn 92.424 66 5 0 3454 3519 280250075 280250010 1.040000e-15 95.3
42 TraesCS5B01G143600 chrUn 92.424 66 5 0 3454 3519 284865215 284865280 1.040000e-15 95.3
43 TraesCS5B01G143600 chrUn 92.188 64 5 0 3454 3517 307247163 307247100 1.350000e-14 91.6
44 TraesCS5B01G143600 chr4A 96.491 57 2 0 3463 3519 48893635 48893579 1.040000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G143600 chr5B 271109074 271112594 3520 False 6503.0 6503 100.0000 1 3521 1 chr5B.!!$F2 3520
1 TraesCS5B01G143600 chr5D 233746768 233751902 5134 True 989.4 2174 93.5804 1 3449 5 chr5D.!!$R2 3448
2 TraesCS5B01G143600 chr5A 320998999 321003560 4561 False 847.0 2056 91.6354 208 3449 5 chr5A.!!$F2 3241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 149 0.672711 GGTTCTCCACGTTGGTAGGC 60.673 60.0 0.00 0.00 39.03 3.93 F
1354 4831 0.598562 TCATCTCTTATCTCGGCGCC 59.401 55.0 19.07 19.07 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 5030 0.034059 AGTGCAGACAGGAAACGAGG 59.966 55.0 0.00 0.0 0.00 4.63 R
3262 6766 0.036164 TATTTCACAGGCCACAGCGT 59.964 50.0 5.01 0.0 41.24 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.748465 GCCGCACCTATTTAACCAGGAT 60.748 50.000 8.26 0.00 35.76 3.24
31 32 3.564225 GCACCTATTTAACCAGGATTCCG 59.436 47.826 8.26 0.00 35.76 4.30
60 65 0.737715 GCACCGAACTGCTCTTCGAT 60.738 55.000 15.31 0.00 44.83 3.59
68 73 1.341482 ACTGCTCTTCGATCCTCTCCA 60.341 52.381 0.00 0.00 0.00 3.86
77 82 1.817740 CGATCCTCTCCACTCCTCTCC 60.818 61.905 0.00 0.00 0.00 3.71
103 108 2.824041 GCCGGCGACACCATCATT 60.824 61.111 12.58 0.00 39.03 2.57
117 122 1.137479 CATCATTTCCACACCATGCCC 59.863 52.381 0.00 0.00 0.00 5.36
123 128 2.334946 CCACACCATGCCCAAGTCG 61.335 63.158 0.00 0.00 0.00 4.18
143 148 0.682852 TGGTTCTCCACGTTGGTAGG 59.317 55.000 0.00 0.00 39.03 3.18
144 149 0.672711 GGTTCTCCACGTTGGTAGGC 60.673 60.000 0.00 0.00 39.03 3.93
204 209 1.144565 CGAGCATGTCTTCCTCAGCG 61.145 60.000 0.00 0.00 0.00 5.18
206 211 1.078848 GCATGTCTTCCTCAGCGGT 60.079 57.895 0.00 0.00 0.00 5.68
270 346 1.906824 AACGTGAAGGAGGAGCCGA 60.907 57.895 0.00 0.00 43.43 5.54
288 364 1.935327 GAACTCCTCGCCGCACTACT 61.935 60.000 0.00 0.00 0.00 2.57
343 419 1.275505 GTAAAGGCGCGAAGTAGGTC 58.724 55.000 12.10 0.00 0.00 3.85
354 430 4.558080 CGCGAAGTAGGTCTTTCTTAAGTC 59.442 45.833 0.00 0.00 36.40 3.01
380 456 3.504520 AGCGAAACGGGTGAAATATTGTT 59.495 39.130 0.00 0.00 0.00 2.83
504 580 0.696501 ATAACCGGCTCCCACTGTTT 59.303 50.000 0.00 0.00 0.00 2.83
601 2253 7.497249 CCCTTGATTCTCCTACTTGTGAATAAG 59.503 40.741 0.00 0.00 30.41 1.73
1315 4792 4.436986 GGTTCTTCCCATTCGACGAATTTC 60.437 45.833 20.12 5.30 28.87 2.17
1349 4826 4.686972 TGTTGGCTTCATCTCTTATCTCG 58.313 43.478 0.00 0.00 0.00 4.04
1354 4831 0.598562 TCATCTCTTATCTCGGCGCC 59.401 55.000 19.07 19.07 0.00 6.53
1416 4894 1.819288 TCGACTGAACCTCTGATGGAC 59.181 52.381 0.00 0.00 0.00 4.02
1451 4929 1.153369 TGCTATTGCCTCCACGAGC 60.153 57.895 0.00 0.00 38.71 5.03
1524 5002 9.952188 TCAATTTTGAATTCATAACGTACACAA 57.048 25.926 9.40 0.00 33.55 3.33
1547 5025 9.788960 ACAACTGAAAATGAGTAGAAGAAAAAC 57.211 29.630 0.00 0.00 0.00 2.43
1548 5026 9.237846 CAACTGAAAATGAGTAGAAGAAAAACC 57.762 33.333 0.00 0.00 0.00 3.27
1549 5027 7.639945 ACTGAAAATGAGTAGAAGAAAAACCG 58.360 34.615 0.00 0.00 0.00 4.44
1551 5029 7.636326 TGAAAATGAGTAGAAGAAAAACCGAC 58.364 34.615 0.00 0.00 0.00 4.79
1552 5030 6.555812 AAATGAGTAGAAGAAAAACCGACC 57.444 37.500 0.00 0.00 0.00 4.79
1558 5042 2.158856 AGAAGAAAAACCGACCCTCGTT 60.159 45.455 0.00 0.00 38.40 3.85
1563 5047 0.250166 AAACCGACCCTCGTTTCCTG 60.250 55.000 0.00 0.00 38.40 3.86
1591 5075 3.496130 ACTGTGCTCTGTCAATTTCTTCG 59.504 43.478 0.00 0.00 0.00 3.79
1609 5096 7.766219 TTCTTCGGTCTTGTAATATAACAGC 57.234 36.000 0.00 0.00 0.00 4.40
1654 5141 2.021068 TATCTGCACTGGAGCCGCTC 62.021 60.000 12.27 12.27 0.00 5.03
1664 5151 0.681243 GGAGCCGCTCCCAATTTCTT 60.681 55.000 26.79 0.00 44.36 2.52
1665 5152 0.735471 GAGCCGCTCCCAATTTCTTC 59.265 55.000 9.42 0.00 0.00 2.87
1666 5153 0.038166 AGCCGCTCCCAATTTCTTCA 59.962 50.000 0.00 0.00 0.00 3.02
1667 5154 1.106285 GCCGCTCCCAATTTCTTCAT 58.894 50.000 0.00 0.00 0.00 2.57
1668 5155 2.092429 AGCCGCTCCCAATTTCTTCATA 60.092 45.455 0.00 0.00 0.00 2.15
1669 5156 2.033424 GCCGCTCCCAATTTCTTCATAC 59.967 50.000 0.00 0.00 0.00 2.39
1670 5157 3.278574 CCGCTCCCAATTTCTTCATACA 58.721 45.455 0.00 0.00 0.00 2.29
1671 5158 3.313526 CCGCTCCCAATTTCTTCATACAG 59.686 47.826 0.00 0.00 0.00 2.74
1672 5159 3.941483 CGCTCCCAATTTCTTCATACAGT 59.059 43.478 0.00 0.00 0.00 3.55
1673 5160 5.116180 CGCTCCCAATTTCTTCATACAGTA 58.884 41.667 0.00 0.00 0.00 2.74
1674 5161 5.235186 CGCTCCCAATTTCTTCATACAGTAG 59.765 44.000 0.00 0.00 0.00 2.57
1675 5162 6.116126 GCTCCCAATTTCTTCATACAGTAGT 58.884 40.000 0.00 0.00 0.00 2.73
1676 5163 6.599638 GCTCCCAATTTCTTCATACAGTAGTT 59.400 38.462 0.00 0.00 0.00 2.24
1677 5164 7.121315 GCTCCCAATTTCTTCATACAGTAGTTT 59.879 37.037 0.00 0.00 0.00 2.66
1678 5165 8.335532 TCCCAATTTCTTCATACAGTAGTTTG 57.664 34.615 0.00 0.00 0.00 2.93
1679 5166 7.029563 CCCAATTTCTTCATACAGTAGTTTGC 58.970 38.462 0.00 0.00 0.00 3.68
1680 5167 7.309133 CCCAATTTCTTCATACAGTAGTTTGCA 60.309 37.037 0.00 0.00 0.00 4.08
1681 5168 8.081633 CCAATTTCTTCATACAGTAGTTTGCAA 58.918 33.333 0.00 0.00 0.00 4.08
1682 5169 9.630098 CAATTTCTTCATACAGTAGTTTGCAAT 57.370 29.630 0.00 0.00 0.00 3.56
1683 5170 9.630098 AATTTCTTCATACAGTAGTTTGCAATG 57.370 29.630 0.00 0.00 0.00 2.82
1684 5171 7.744087 TTCTTCATACAGTAGTTTGCAATGT 57.256 32.000 0.00 3.67 0.00 2.71
1685 5172 7.744087 TCTTCATACAGTAGTTTGCAATGTT 57.256 32.000 7.86 0.00 0.00 2.71
1686 5173 7.806690 TCTTCATACAGTAGTTTGCAATGTTC 58.193 34.615 7.86 0.00 0.00 3.18
1687 5174 7.661437 TCTTCATACAGTAGTTTGCAATGTTCT 59.339 33.333 7.86 4.09 0.00 3.01
1688 5175 7.744087 TCATACAGTAGTTTGCAATGTTCTT 57.256 32.000 7.86 0.00 0.00 2.52
1689 5176 8.840833 TCATACAGTAGTTTGCAATGTTCTTA 57.159 30.769 7.86 0.00 0.00 2.10
1690 5177 8.717821 TCATACAGTAGTTTGCAATGTTCTTAC 58.282 33.333 7.86 0.00 0.00 2.34
1691 5178 5.985781 ACAGTAGTTTGCAATGTTCTTACG 58.014 37.500 0.00 0.00 0.00 3.18
1692 5179 5.049680 ACAGTAGTTTGCAATGTTCTTACGG 60.050 40.000 0.00 1.35 0.00 4.02
1697 5184 1.535028 TGCAATGTTCTTACGGCAGTG 59.465 47.619 0.00 0.00 0.00 3.66
1711 5198 3.190535 ACGGCAGTGATTTTACCAACATC 59.809 43.478 0.00 0.00 0.00 3.06
1714 5201 5.296780 CGGCAGTGATTTTACCAACATCTAT 59.703 40.000 0.00 0.00 0.00 1.98
1715 5202 6.481976 CGGCAGTGATTTTACCAACATCTATA 59.518 38.462 0.00 0.00 0.00 1.31
1716 5203 7.307396 CGGCAGTGATTTTACCAACATCTATAG 60.307 40.741 0.00 0.00 0.00 1.31
1717 5204 7.355778 GCAGTGATTTTACCAACATCTATAGC 58.644 38.462 0.00 0.00 0.00 2.97
1719 5206 8.554528 CAGTGATTTTACCAACATCTATAGCAG 58.445 37.037 0.00 0.00 0.00 4.24
1720 5207 8.486210 AGTGATTTTACCAACATCTATAGCAGA 58.514 33.333 0.00 0.00 37.79 4.26
1721 5208 8.552034 GTGATTTTACCAACATCTATAGCAGAC 58.448 37.037 0.00 0.00 35.62 3.51
1722 5209 7.715249 TGATTTTACCAACATCTATAGCAGACC 59.285 37.037 0.00 0.00 35.62 3.85
1723 5210 6.553953 TTTACCAACATCTATAGCAGACCA 57.446 37.500 0.00 0.00 35.62 4.02
1724 5211 6.553953 TTACCAACATCTATAGCAGACCAA 57.446 37.500 0.00 0.00 35.62 3.67
1731 5218 9.888878 CAACATCTATAGCAGACCAATAAATTG 57.111 33.333 0.00 0.00 35.62 2.32
1753 5240 9.625747 AATTGATAAAACAAGAATGTGGGTTTT 57.374 25.926 0.00 0.00 43.52 2.43
1754 5241 8.430801 TTGATAAAACAAGAATGTGGGTTTTG 57.569 30.769 10.57 0.00 41.82 2.44
1755 5242 7.560368 TGATAAAACAAGAATGTGGGTTTTGT 58.440 30.769 10.57 5.04 41.82 2.83
1756 5243 8.696374 TGATAAAACAAGAATGTGGGTTTTGTA 58.304 29.630 10.57 0.00 41.82 2.41
1757 5244 8.880878 ATAAAACAAGAATGTGGGTTTTGTAC 57.119 30.769 10.57 0.00 41.82 2.90
1758 5245 4.561735 ACAAGAATGTGGGTTTTGTACG 57.438 40.909 0.00 0.00 38.69 3.67
1759 5246 3.949113 ACAAGAATGTGGGTTTTGTACGT 59.051 39.130 0.00 0.00 38.69 3.57
1760 5247 4.399934 ACAAGAATGTGGGTTTTGTACGTT 59.600 37.500 0.00 0.00 38.69 3.99
1800 5294 5.245977 GTCTCATTTTGGGGAGGAATTTCAA 59.754 40.000 0.00 0.00 0.00 2.69
2312 5809 3.473647 CGGATCTGCTGGAGGCCA 61.474 66.667 5.01 0.00 40.92 5.36
2360 5857 1.298638 CGCGCTGAGTCGATGATCA 60.299 57.895 5.56 0.00 0.00 2.92
2432 5933 0.318699 TCTTCAAGTGACTGTCGCCG 60.319 55.000 17.11 9.50 0.00 6.46
2464 5965 1.277557 GAGCCAGTGGAGATGAAGTGT 59.722 52.381 15.20 0.00 0.00 3.55
2485 5986 3.192541 TGTTCAGTTAGTTGCAGCTGA 57.807 42.857 20.43 1.29 36.35 4.26
2523 6024 7.908453 AGCCTGATCTAACTTGTAGTAAAACT 58.092 34.615 0.00 0.00 0.00 2.66
2525 6026 8.443937 GCCTGATCTAACTTGTAGTAAAACTTG 58.556 37.037 0.00 0.00 0.00 3.16
2549 6050 2.033801 ACAAAGTTCTGACATGCAGCAC 59.966 45.455 0.00 10.66 44.52 4.40
2631 6133 8.523915 ACCATTAATCTGCAGATTATTGTTCA 57.476 30.769 38.26 28.81 43.93 3.18
2703 6205 1.628846 AGAAAGTGCCAAGGACGGTAT 59.371 47.619 0.00 0.00 0.00 2.73
2735 6237 6.391227 AAATGACCAAAGTTTGTCGAATCT 57.609 33.333 14.36 0.00 0.00 2.40
2740 6242 3.365364 CCAAAGTTTGTCGAATCTCAGCC 60.365 47.826 14.36 0.00 0.00 4.85
2776 6278 1.668047 GCTGTGCCATCTTTTCAGTGC 60.668 52.381 0.00 0.00 0.00 4.40
2869 6371 2.559668 CTGCAGAAAGGGAGATTTTGCA 59.440 45.455 8.42 4.71 36.13 4.08
2873 6375 4.390909 GCAGAAAGGGAGATTTTGCATTTG 59.609 41.667 0.00 0.00 31.08 2.32
2885 6388 1.326213 TGCATTTGGGCGTAATGGGG 61.326 55.000 10.82 0.00 34.36 4.96
2888 6391 1.613437 CATTTGGGCGTAATGGGGATC 59.387 52.381 3.13 0.00 31.00 3.36
2923 6426 6.810676 CAGAATGTCAGAAGAATCGAGAAGAA 59.189 38.462 0.00 0.00 0.00 2.52
2943 6446 5.429130 AGAAGGACGAAATTGAGGGAATAC 58.571 41.667 0.00 0.00 0.00 1.89
2952 6455 4.706842 ATTGAGGGAATACTGCCGTAAT 57.293 40.909 0.00 0.00 38.32 1.89
3049 6552 1.076024 ACATGGCAGTGATGAAGGGTT 59.924 47.619 0.00 0.00 0.00 4.11
3058 6561 3.073650 AGTGATGAAGGGTTCTGCTTCTT 59.926 43.478 0.00 0.00 0.00 2.52
3059 6562 3.190118 GTGATGAAGGGTTCTGCTTCTTG 59.810 47.826 0.00 0.00 0.00 3.02
3061 6564 3.297134 TGAAGGGTTCTGCTTCTTGTT 57.703 42.857 0.00 0.00 0.00 2.83
3062 6565 4.431416 TGAAGGGTTCTGCTTCTTGTTA 57.569 40.909 0.00 0.00 0.00 2.41
3063 6566 4.787551 TGAAGGGTTCTGCTTCTTGTTAA 58.212 39.130 0.00 0.00 0.00 2.01
3064 6567 5.385198 TGAAGGGTTCTGCTTCTTGTTAAT 58.615 37.500 0.00 0.00 0.00 1.40
3065 6568 5.241506 TGAAGGGTTCTGCTTCTTGTTAATG 59.758 40.000 0.00 0.00 0.00 1.90
3066 6569 4.729868 AGGGTTCTGCTTCTTGTTAATGT 58.270 39.130 0.00 0.00 0.00 2.71
3067 6570 5.140454 AGGGTTCTGCTTCTTGTTAATGTT 58.860 37.500 0.00 0.00 0.00 2.71
3068 6571 5.598417 AGGGTTCTGCTTCTTGTTAATGTTT 59.402 36.000 0.00 0.00 0.00 2.83
3069 6572 5.691754 GGGTTCTGCTTCTTGTTAATGTTTG 59.308 40.000 0.00 0.00 0.00 2.93
3070 6573 6.460953 GGGTTCTGCTTCTTGTTAATGTTTGA 60.461 38.462 0.00 0.00 0.00 2.69
3071 6574 6.978080 GGTTCTGCTTCTTGTTAATGTTTGAA 59.022 34.615 0.00 0.00 0.00 2.69
3072 6575 7.653311 GGTTCTGCTTCTTGTTAATGTTTGAAT 59.347 33.333 0.00 0.00 0.00 2.57
3096 6599 3.873910 AGCTGGCGTTTTATACATCAGT 58.126 40.909 0.00 0.00 32.36 3.41
3187 6691 9.445973 AAAATATATTTTTAGGGCCTGATTGGA 57.554 29.630 18.53 0.00 36.65 3.53
3188 6692 9.619842 AAATATATTTTTAGGGCCTGATTGGAT 57.380 29.630 18.53 5.68 38.35 3.41
3189 6693 8.829373 ATATATTTTTAGGGCCTGATTGGATC 57.171 34.615 18.53 0.00 38.35 3.36
3190 6694 2.638480 TTTAGGGCCTGATTGGATCG 57.362 50.000 18.53 0.00 38.35 3.69
3191 6695 1.507140 TTAGGGCCTGATTGGATCGT 58.493 50.000 18.53 0.00 38.35 3.73
3192 6696 1.048601 TAGGGCCTGATTGGATCGTC 58.951 55.000 18.53 0.00 38.35 4.20
3193 6697 1.595382 GGGCCTGATTGGATCGTCG 60.595 63.158 0.84 0.00 38.35 5.12
3194 6698 1.144057 GGCCTGATTGGATCGTCGT 59.856 57.895 0.00 0.00 38.35 4.34
3195 6699 0.462047 GGCCTGATTGGATCGTCGTT 60.462 55.000 0.00 0.00 38.35 3.85
3196 6700 1.369625 GCCTGATTGGATCGTCGTTT 58.630 50.000 0.00 0.00 38.35 3.60
3197 6701 1.327764 GCCTGATTGGATCGTCGTTTC 59.672 52.381 0.00 0.00 38.35 2.78
3198 6702 2.616960 CCTGATTGGATCGTCGTTTCA 58.383 47.619 0.00 0.00 38.35 2.69
3199 6703 2.348666 CCTGATTGGATCGTCGTTTCAC 59.651 50.000 0.00 0.00 38.35 3.18
3200 6704 2.993220 CTGATTGGATCGTCGTTTCACA 59.007 45.455 0.00 0.00 0.00 3.58
3201 6705 2.993220 TGATTGGATCGTCGTTTCACAG 59.007 45.455 0.00 0.00 0.00 3.66
3202 6706 1.790755 TTGGATCGTCGTTTCACAGG 58.209 50.000 0.00 0.00 0.00 4.00
3203 6707 0.037697 TGGATCGTCGTTTCACAGGG 60.038 55.000 0.00 0.00 0.00 4.45
3204 6708 0.245539 GGATCGTCGTTTCACAGGGA 59.754 55.000 0.00 0.00 0.00 4.20
3205 6709 1.347320 GATCGTCGTTTCACAGGGAC 58.653 55.000 0.00 0.00 0.00 4.46
3206 6710 0.677288 ATCGTCGTTTCACAGGGACA 59.323 50.000 0.00 0.00 0.00 4.02
3207 6711 0.677288 TCGTCGTTTCACAGGGACAT 59.323 50.000 0.00 0.00 0.00 3.06
3208 6712 1.887854 TCGTCGTTTCACAGGGACATA 59.112 47.619 0.00 0.00 0.00 2.29
3209 6713 1.990563 CGTCGTTTCACAGGGACATAC 59.009 52.381 0.00 0.00 0.00 2.39
3210 6714 2.608506 CGTCGTTTCACAGGGACATACA 60.609 50.000 0.00 0.00 0.00 2.29
3211 6715 2.735134 GTCGTTTCACAGGGACATACAC 59.265 50.000 0.00 0.00 0.00 2.90
3212 6716 2.631062 TCGTTTCACAGGGACATACACT 59.369 45.455 0.00 0.00 0.00 3.55
3213 6717 3.070446 TCGTTTCACAGGGACATACACTT 59.930 43.478 0.00 0.00 0.00 3.16
3214 6718 3.186409 CGTTTCACAGGGACATACACTTG 59.814 47.826 0.00 0.00 0.00 3.16
3215 6719 4.134563 GTTTCACAGGGACATACACTTGT 58.865 43.478 0.00 0.00 0.00 3.16
3216 6720 5.302360 GTTTCACAGGGACATACACTTGTA 58.698 41.667 0.00 0.00 34.67 2.41
3217 6721 5.554437 TTCACAGGGACATACACTTGTAA 57.446 39.130 0.00 0.00 33.76 2.41
3218 6722 5.554437 TCACAGGGACATACACTTGTAAA 57.446 39.130 0.00 0.00 33.76 2.01
3219 6723 5.931294 TCACAGGGACATACACTTGTAAAA 58.069 37.500 0.00 0.00 33.76 1.52
3220 6724 6.539173 TCACAGGGACATACACTTGTAAAAT 58.461 36.000 0.00 0.00 33.76 1.82
3221 6725 7.681679 TCACAGGGACATACACTTGTAAAATA 58.318 34.615 0.00 0.00 33.76 1.40
3222 6726 8.325787 TCACAGGGACATACACTTGTAAAATAT 58.674 33.333 0.00 0.00 33.76 1.28
3223 6727 9.607988 CACAGGGACATACACTTGTAAAATATA 57.392 33.333 0.00 0.00 33.76 0.86
3224 6728 9.609346 ACAGGGACATACACTTGTAAAATATAC 57.391 33.333 0.00 0.00 33.76 1.47
3225 6729 9.607988 CAGGGACATACACTTGTAAAATATACA 57.392 33.333 0.00 0.00 33.76 2.29
3226 6730 9.609346 AGGGACATACACTTGTAAAATATACAC 57.391 33.333 0.00 0.00 33.76 2.90
3227 6731 9.386010 GGGACATACACTTGTAAAATATACACA 57.614 33.333 0.00 0.00 33.76 3.72
3229 6733 9.916397 GACATACACTTGTAAAATATACACAGC 57.084 33.333 0.00 0.00 33.76 4.40
3230 6734 9.667107 ACATACACTTGTAAAATATACACAGCT 57.333 29.630 0.00 0.00 33.76 4.24
3232 6736 7.611213 ACACTTGTAAAATATACACAGCTCC 57.389 36.000 0.00 0.00 0.00 4.70
3233 6737 6.312918 ACACTTGTAAAATATACACAGCTCCG 59.687 38.462 0.00 0.00 0.00 4.63
3234 6738 6.312918 CACTTGTAAAATATACACAGCTCCGT 59.687 38.462 0.00 0.00 0.00 4.69
3235 6739 6.534079 ACTTGTAAAATATACACAGCTCCGTC 59.466 38.462 0.00 0.00 0.00 4.79
3236 6740 5.353938 TGTAAAATATACACAGCTCCGTCC 58.646 41.667 0.00 0.00 0.00 4.79
3237 6741 2.795175 AATATACACAGCTCCGTCCG 57.205 50.000 0.00 0.00 0.00 4.79
3238 6742 1.688772 ATATACACAGCTCCGTCCGT 58.311 50.000 0.00 0.00 0.00 4.69
3239 6743 1.466856 TATACACAGCTCCGTCCGTT 58.533 50.000 0.00 0.00 0.00 4.44
3240 6744 0.108804 ATACACAGCTCCGTCCGTTG 60.109 55.000 0.00 0.00 0.00 4.10
3241 6745 1.457823 TACACAGCTCCGTCCGTTGT 61.458 55.000 0.00 0.00 0.00 3.32
3242 6746 1.594293 CACAGCTCCGTCCGTTGTT 60.594 57.895 0.00 0.00 0.00 2.83
3243 6747 1.145377 ACAGCTCCGTCCGTTGTTT 59.855 52.632 0.00 0.00 0.00 2.83
3244 6748 0.463116 ACAGCTCCGTCCGTTGTTTT 60.463 50.000 0.00 0.00 0.00 2.43
3245 6749 0.661020 CAGCTCCGTCCGTTGTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
3246 6750 0.661020 AGCTCCGTCCGTTGTTTTTG 59.339 50.000 0.00 0.00 0.00 2.44
3247 6751 0.379316 GCTCCGTCCGTTGTTTTTGT 59.621 50.000 0.00 0.00 0.00 2.83
3248 6752 1.202211 GCTCCGTCCGTTGTTTTTGTT 60.202 47.619 0.00 0.00 0.00 2.83
3249 6753 2.711885 CTCCGTCCGTTGTTTTTGTTC 58.288 47.619 0.00 0.00 0.00 3.18
3250 6754 1.401199 TCCGTCCGTTGTTTTTGTTCC 59.599 47.619 0.00 0.00 0.00 3.62
3251 6755 1.132643 CCGTCCGTTGTTTTTGTTCCA 59.867 47.619 0.00 0.00 0.00 3.53
3252 6756 2.446282 CGTCCGTTGTTTTTGTTCCAG 58.554 47.619 0.00 0.00 0.00 3.86
3253 6757 2.793237 CGTCCGTTGTTTTTGTTCCAGG 60.793 50.000 0.00 0.00 0.00 4.45
3254 6758 2.164827 GTCCGTTGTTTTTGTTCCAGGT 59.835 45.455 0.00 0.00 0.00 4.00
3255 6759 2.164624 TCCGTTGTTTTTGTTCCAGGTG 59.835 45.455 0.00 0.00 0.00 4.00
3256 6760 2.535331 CGTTGTTTTTGTTCCAGGTGG 58.465 47.619 0.00 0.00 0.00 4.61
3257 6761 2.164624 CGTTGTTTTTGTTCCAGGTGGA 59.835 45.455 0.00 0.00 43.73 4.02
3265 6769 4.713946 TCCAGGTGGAAATCACGC 57.286 55.556 0.00 0.00 46.96 5.34
3266 6770 2.066340 TCCAGGTGGAAATCACGCT 58.934 52.632 0.00 0.00 46.96 5.07
3267 6771 0.321564 TCCAGGTGGAAATCACGCTG 60.322 55.000 0.00 0.00 46.96 5.18
3268 6772 0.606401 CCAGGTGGAAATCACGCTGT 60.606 55.000 0.00 0.00 46.96 4.40
3269 6773 0.518636 CAGGTGGAAATCACGCTGTG 59.481 55.000 2.79 2.79 46.96 3.66
3270 6774 0.606401 AGGTGGAAATCACGCTGTGG 60.606 55.000 8.46 0.00 46.96 4.17
3271 6775 1.210155 GTGGAAATCACGCTGTGGC 59.790 57.895 8.46 0.00 36.56 5.01
3272 6776 1.971167 TGGAAATCACGCTGTGGCC 60.971 57.895 0.00 0.00 33.87 5.36
3273 6777 1.675641 GGAAATCACGCTGTGGCCT 60.676 57.895 3.32 0.00 33.87 5.19
3274 6778 1.503542 GAAATCACGCTGTGGCCTG 59.496 57.895 3.32 0.00 33.87 4.85
3275 6779 1.228245 AAATCACGCTGTGGCCTGT 60.228 52.632 3.32 0.00 33.87 4.00
3276 6780 1.518056 AAATCACGCTGTGGCCTGTG 61.518 55.000 3.32 5.32 33.87 3.66
3277 6781 2.395988 AATCACGCTGTGGCCTGTGA 62.396 55.000 3.32 10.78 40.86 3.58
3278 6782 2.395988 ATCACGCTGTGGCCTGTGAA 62.396 55.000 3.32 0.00 40.32 3.18
3279 6783 2.186160 CACGCTGTGGCCTGTGAAA 61.186 57.895 3.32 0.00 33.63 2.69
3280 6784 1.228245 ACGCTGTGGCCTGTGAAAT 60.228 52.632 3.32 0.00 34.44 2.17
3281 6785 0.036164 ACGCTGTGGCCTGTGAAATA 59.964 50.000 3.32 0.00 34.44 1.40
3282 6786 0.447801 CGCTGTGGCCTGTGAAATAC 59.552 55.000 3.32 0.00 34.44 1.89
3283 6787 1.533625 GCTGTGGCCTGTGAAATACA 58.466 50.000 3.32 0.00 37.78 2.29
3284 6788 4.318623 CGCTGTGGCCTGTGAAATACAC 62.319 54.545 3.32 0.00 41.47 2.90
3300 6804 9.925268 GTGAAATACACCTGTAAAATAATACGG 57.075 33.333 0.00 0.00 43.05 4.02
3310 6814 9.940166 CCTGTAAAATAATACGGGTGTAAAATC 57.060 33.333 4.49 0.00 44.17 2.17
3324 6828 6.995511 GTGTAAAATCTTACAGCCATACCA 57.004 37.500 0.00 0.00 46.28 3.25
3325 6829 7.385778 GTGTAAAATCTTACAGCCATACCAA 57.614 36.000 0.00 0.00 46.28 3.67
3326 6830 7.472543 GTGTAAAATCTTACAGCCATACCAAG 58.527 38.462 0.00 0.00 46.28 3.61
3327 6831 5.582689 AAAATCTTACAGCCATACCAAGC 57.417 39.130 0.00 0.00 0.00 4.01
3328 6832 2.309528 TCTTACAGCCATACCAAGCG 57.690 50.000 0.00 0.00 0.00 4.68
3329 6833 1.134521 TCTTACAGCCATACCAAGCGG 60.135 52.381 0.00 0.00 38.77 5.52
3330 6834 0.906066 TTACAGCCATACCAAGCGGA 59.094 50.000 0.00 0.00 35.59 5.54
3331 6835 0.464036 TACAGCCATACCAAGCGGAG 59.536 55.000 0.00 0.00 35.59 4.63
3438 6942 6.509656 TCACGTATCAGAGTTGTACAGTTTT 58.490 36.000 0.00 0.00 0.00 2.43
3442 6946 7.169308 ACGTATCAGAGTTGTACAGTTTTTGAG 59.831 37.037 0.00 0.00 0.00 3.02
3449 6953 3.263261 TGTACAGTTTTTGAGTGCGTGA 58.737 40.909 0.00 0.00 31.51 4.35
3450 6954 3.874543 TGTACAGTTTTTGAGTGCGTGAT 59.125 39.130 0.00 0.00 31.51 3.06
3451 6955 3.609103 ACAGTTTTTGAGTGCGTGATC 57.391 42.857 0.00 0.00 31.51 2.92
3452 6956 2.942376 ACAGTTTTTGAGTGCGTGATCA 59.058 40.909 0.00 0.00 31.51 2.92
3453 6957 3.002656 ACAGTTTTTGAGTGCGTGATCAG 59.997 43.478 0.00 0.00 31.51 2.90
3454 6958 2.549754 AGTTTTTGAGTGCGTGATCAGG 59.450 45.455 11.07 11.07 0.00 3.86
3455 6959 2.254546 TTTTGAGTGCGTGATCAGGT 57.745 45.000 16.27 0.00 0.00 4.00
3456 6960 3.394674 TTTTGAGTGCGTGATCAGGTA 57.605 42.857 16.27 9.62 0.00 3.08
3457 6961 3.610040 TTTGAGTGCGTGATCAGGTAT 57.390 42.857 16.27 3.45 0.00 2.73
3458 6962 3.610040 TTGAGTGCGTGATCAGGTATT 57.390 42.857 16.27 9.09 0.00 1.89
3459 6963 3.610040 TGAGTGCGTGATCAGGTATTT 57.390 42.857 16.27 5.41 0.00 1.40
3460 6964 4.729227 TGAGTGCGTGATCAGGTATTTA 57.271 40.909 16.27 3.59 0.00 1.40
3461 6965 5.276461 TGAGTGCGTGATCAGGTATTTAT 57.724 39.130 16.27 1.12 0.00 1.40
3462 6966 6.399639 TGAGTGCGTGATCAGGTATTTATA 57.600 37.500 16.27 0.00 0.00 0.98
3463 6967 6.811954 TGAGTGCGTGATCAGGTATTTATAA 58.188 36.000 16.27 0.00 0.00 0.98
3464 6968 7.269316 TGAGTGCGTGATCAGGTATTTATAAA 58.731 34.615 16.27 0.00 0.00 1.40
3465 6969 7.766738 TGAGTGCGTGATCAGGTATTTATAAAA 59.233 33.333 16.27 0.00 0.00 1.52
3466 6970 8.500753 AGTGCGTGATCAGGTATTTATAAAAA 57.499 30.769 16.27 0.00 0.00 1.94
3467 6971 8.612619 AGTGCGTGATCAGGTATTTATAAAAAG 58.387 33.333 16.27 0.00 0.00 2.27
3468 6972 8.609176 GTGCGTGATCAGGTATTTATAAAAAGA 58.391 33.333 16.27 0.00 0.00 2.52
3469 6973 8.826710 TGCGTGATCAGGTATTTATAAAAAGAG 58.173 33.333 16.27 0.00 0.00 2.85
3470 6974 9.042008 GCGTGATCAGGTATTTATAAAAAGAGA 57.958 33.333 16.27 0.00 0.00 3.10
3490 6994 9.516546 AAAGAGAAAAATATACTTTTCGTCCCT 57.483 29.630 12.35 7.09 45.78 4.20
3491 6995 8.719560 AGAGAAAAATATACTTTTCGTCCCTC 57.280 34.615 12.35 5.86 45.78 4.30
3492 6996 8.319146 AGAGAAAAATATACTTTTCGTCCCTCA 58.681 33.333 12.35 0.00 45.78 3.86
3493 6997 8.857694 AGAAAAATATACTTTTCGTCCCTCAA 57.142 30.769 12.35 0.00 45.78 3.02
3494 6998 8.727910 AGAAAAATATACTTTTCGTCCCTCAAC 58.272 33.333 12.35 0.00 45.78 3.18
3495 6999 8.631480 AAAAATATACTTTTCGTCCCTCAACT 57.369 30.769 0.00 0.00 0.00 3.16
3496 7000 7.845066 AAATATACTTTTCGTCCCTCAACTC 57.155 36.000 0.00 0.00 0.00 3.01
3497 7001 6.793505 ATATACTTTTCGTCCCTCAACTCT 57.206 37.500 0.00 0.00 0.00 3.24
3498 7002 3.840124 ACTTTTCGTCCCTCAACTCTT 57.160 42.857 0.00 0.00 0.00 2.85
3499 7003 3.467803 ACTTTTCGTCCCTCAACTCTTG 58.532 45.455 0.00 0.00 0.00 3.02
3500 7004 2.543777 TTTCGTCCCTCAACTCTTGG 57.456 50.000 0.00 0.00 0.00 3.61
3501 7005 1.420430 TTCGTCCCTCAACTCTTGGT 58.580 50.000 0.00 0.00 0.00 3.67
3502 7006 0.679505 TCGTCCCTCAACTCTTGGTG 59.320 55.000 0.00 0.00 0.00 4.17
3503 7007 0.679505 CGTCCCTCAACTCTTGGTGA 59.320 55.000 0.00 0.00 0.00 4.02
3504 7008 1.070134 CGTCCCTCAACTCTTGGTGAA 59.930 52.381 0.00 0.00 0.00 3.18
3505 7009 2.495084 GTCCCTCAACTCTTGGTGAAC 58.505 52.381 0.00 0.00 0.00 3.18
3506 7010 2.104963 GTCCCTCAACTCTTGGTGAACT 59.895 50.000 0.00 0.00 0.00 3.01
3507 7011 2.368875 TCCCTCAACTCTTGGTGAACTC 59.631 50.000 0.00 0.00 0.00 3.01
3508 7012 2.370189 CCCTCAACTCTTGGTGAACTCT 59.630 50.000 0.00 0.00 0.00 3.24
3509 7013 3.578716 CCCTCAACTCTTGGTGAACTCTA 59.421 47.826 0.00 0.00 0.00 2.43
3510 7014 4.322349 CCCTCAACTCTTGGTGAACTCTAG 60.322 50.000 0.00 0.00 0.00 2.43
3511 7015 4.524714 CCTCAACTCTTGGTGAACTCTAGA 59.475 45.833 0.00 0.00 0.00 2.43
3512 7016 5.186797 CCTCAACTCTTGGTGAACTCTAGAT 59.813 44.000 0.00 0.00 0.00 1.98
3513 7017 6.295575 CCTCAACTCTTGGTGAACTCTAGATT 60.296 42.308 0.00 0.00 0.00 2.40
3514 7018 7.067496 TCAACTCTTGGTGAACTCTAGATTT 57.933 36.000 0.00 0.00 0.00 2.17
3515 7019 6.931281 TCAACTCTTGGTGAACTCTAGATTTG 59.069 38.462 0.00 0.00 30.98 2.32
3516 7020 5.799213 ACTCTTGGTGAACTCTAGATTTGG 58.201 41.667 0.00 0.00 0.00 3.28
3517 7021 5.308237 ACTCTTGGTGAACTCTAGATTTGGT 59.692 40.000 0.00 0.00 0.00 3.67
3518 7022 5.794894 TCTTGGTGAACTCTAGATTTGGTC 58.205 41.667 0.00 0.00 0.00 4.02
3519 7023 5.544176 TCTTGGTGAACTCTAGATTTGGTCT 59.456 40.000 0.00 0.00 41.11 3.85
3520 7024 5.825593 TGGTGAACTCTAGATTTGGTCTT 57.174 39.130 0.00 0.00 38.42 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.745486 GGTTAAATAGGTGCGGCGGT 60.745 55.000 9.78 0.00 0.00 5.68
31 32 4.373116 TTCGGTGCGGACAGAGCC 62.373 66.667 9.96 0.00 0.00 4.70
41 46 2.647885 GATCGAAGAGCAGTTCGGTGC 61.648 57.143 17.33 6.53 43.27 5.01
60 65 1.610327 CGGAGAGGAGTGGAGAGGA 59.390 63.158 0.00 0.00 0.00 3.71
103 108 0.539438 GACTTGGGCATGGTGTGGAA 60.539 55.000 0.00 0.00 0.00 3.53
189 194 0.803768 CGACCGCTGAGGAAGACATG 60.804 60.000 3.87 0.00 45.00 3.21
190 195 1.251527 ACGACCGCTGAGGAAGACAT 61.252 55.000 3.87 0.00 45.00 3.06
253 329 1.906824 TTCGGCTCCTCCTTCACGT 60.907 57.895 0.00 0.00 0.00 4.49
270 346 1.977544 AGTAGTGCGGCGAGGAGTT 60.978 57.895 12.98 0.00 0.00 3.01
333 409 9.344309 CTAAAGACTTAAGAAAGACCTACTTCG 57.656 37.037 10.09 0.00 37.93 3.79
343 419 6.297353 CCGTTTCGCTAAAGACTTAAGAAAG 58.703 40.000 10.09 0.26 38.77 2.62
354 430 3.824414 ATTTCACCCGTTTCGCTAAAG 57.176 42.857 0.00 0.00 0.00 1.85
504 580 1.275666 ATTCCCGGACAGTGATGTGA 58.724 50.000 0.73 0.00 0.00 3.58
601 2253 0.893727 AACGGGTGTTCATGCTTCCC 60.894 55.000 0.00 0.00 30.83 3.97
932 4406 1.776034 GATGGAACGGAATGGAGCGC 61.776 60.000 0.00 0.00 0.00 5.92
963 4437 3.440872 AGCGCCGTTGGTTTTATATTTCA 59.559 39.130 2.29 0.00 0.00 2.69
1315 4792 3.250762 TGAAGCCAACAATCGTCTCTTTG 59.749 43.478 0.00 0.00 0.00 2.77
1349 4826 1.808531 AAAACTAAAACCCCGGCGCC 61.809 55.000 19.07 19.07 0.00 6.53
1354 4831 7.707464 AGATTGTTTAACAAAACTAAAACCCCG 59.293 33.333 14.70 0.00 41.96 5.73
1416 4894 1.523501 GCACGAATATGTTGTGTGCG 58.476 50.000 11.61 0.00 45.26 5.34
1451 4929 0.957395 GGTGGATGTGTCACAGGCAG 60.957 60.000 12.03 0.00 36.90 4.85
1505 4983 7.716768 TTCAGTTGTGTACGTTATGAATTCA 57.283 32.000 11.26 11.26 0.00 2.57
1524 5002 7.497909 TCGGTTTTTCTTCTACTCATTTTCAGT 59.502 33.333 0.00 0.00 0.00 3.41
1547 5025 1.080025 GACAGGAAACGAGGGTCGG 60.080 63.158 0.86 0.00 45.59 4.79
1548 5026 0.388649 CAGACAGGAAACGAGGGTCG 60.389 60.000 0.00 0.00 46.93 4.79
1549 5027 0.670854 GCAGACAGGAAACGAGGGTC 60.671 60.000 0.00 0.00 0.00 4.46
1551 5029 0.951040 GTGCAGACAGGAAACGAGGG 60.951 60.000 0.00 0.00 0.00 4.30
1552 5030 0.034059 AGTGCAGACAGGAAACGAGG 59.966 55.000 0.00 0.00 0.00 4.63
1558 5042 4.462394 GCACAGTGCAGACAGGAA 57.538 55.556 21.22 0.00 44.26 3.36
1591 5075 7.333423 TGTGTTCTGCTGTTATATTACAAGACC 59.667 37.037 0.00 0.00 0.00 3.85
1630 5117 1.270732 GGCTCCAGTGCAGATAGGATG 60.271 57.143 0.00 0.00 34.04 3.51
1654 5141 7.029563 GCAAACTACTGTATGAAGAAATTGGG 58.970 38.462 0.00 0.00 0.00 4.12
1658 5145 8.796475 ACATTGCAAACTACTGTATGAAGAAAT 58.204 29.630 1.71 0.00 0.00 2.17
1664 5151 7.744087 AAGAACATTGCAAACTACTGTATGA 57.256 32.000 1.71 0.00 0.00 2.15
1665 5152 7.688167 CGTAAGAACATTGCAAACTACTGTATG 59.312 37.037 1.71 0.00 43.02 2.39
1666 5153 7.148474 CCGTAAGAACATTGCAAACTACTGTAT 60.148 37.037 1.71 0.00 43.02 2.29
1667 5154 6.146510 CCGTAAGAACATTGCAAACTACTGTA 59.853 38.462 1.71 0.00 43.02 2.74
1668 5155 5.049680 CCGTAAGAACATTGCAAACTACTGT 60.050 40.000 1.71 0.00 43.02 3.55
1669 5156 5.382303 CCGTAAGAACATTGCAAACTACTG 58.618 41.667 1.71 0.00 43.02 2.74
1670 5157 4.083484 GCCGTAAGAACATTGCAAACTACT 60.083 41.667 1.71 0.00 43.02 2.57
1671 5158 4.156182 GCCGTAAGAACATTGCAAACTAC 58.844 43.478 1.71 0.00 43.02 2.73
1672 5159 3.815962 TGCCGTAAGAACATTGCAAACTA 59.184 39.130 1.71 0.00 43.02 2.24
1673 5160 2.621055 TGCCGTAAGAACATTGCAAACT 59.379 40.909 1.71 0.00 43.02 2.66
1674 5161 2.979813 CTGCCGTAAGAACATTGCAAAC 59.020 45.455 1.71 0.00 43.02 2.93
1675 5162 2.621055 ACTGCCGTAAGAACATTGCAAA 59.379 40.909 1.71 0.00 43.02 3.68
1676 5163 2.031245 CACTGCCGTAAGAACATTGCAA 60.031 45.455 0.00 0.00 43.02 4.08
1677 5164 1.535028 CACTGCCGTAAGAACATTGCA 59.465 47.619 0.00 0.00 43.02 4.08
1678 5165 1.804151 TCACTGCCGTAAGAACATTGC 59.196 47.619 0.00 0.00 43.02 3.56
1679 5166 4.685169 AATCACTGCCGTAAGAACATTG 57.315 40.909 0.00 0.00 43.02 2.82
1680 5167 5.705609 AAAATCACTGCCGTAAGAACATT 57.294 34.783 0.00 0.00 43.02 2.71
1681 5168 5.123344 GGTAAAATCACTGCCGTAAGAACAT 59.877 40.000 0.00 0.00 43.02 2.71
1682 5169 4.453136 GGTAAAATCACTGCCGTAAGAACA 59.547 41.667 0.00 0.00 43.02 3.18
1683 5170 4.453136 TGGTAAAATCACTGCCGTAAGAAC 59.547 41.667 0.00 0.00 43.02 3.01
1684 5171 4.643463 TGGTAAAATCACTGCCGTAAGAA 58.357 39.130 0.00 0.00 43.02 2.52
1685 5172 4.274602 TGGTAAAATCACTGCCGTAAGA 57.725 40.909 0.00 0.00 43.02 2.10
1686 5173 4.214545 TGTTGGTAAAATCACTGCCGTAAG 59.785 41.667 0.00 0.00 0.00 2.34
1687 5174 4.135306 TGTTGGTAAAATCACTGCCGTAA 58.865 39.130 0.00 0.00 0.00 3.18
1688 5175 3.741249 TGTTGGTAAAATCACTGCCGTA 58.259 40.909 0.00 0.00 0.00 4.02
1689 5176 2.577700 TGTTGGTAAAATCACTGCCGT 58.422 42.857 0.00 0.00 0.00 5.68
1690 5177 3.440173 AGATGTTGGTAAAATCACTGCCG 59.560 43.478 0.00 0.00 0.00 5.69
1691 5178 6.699575 ATAGATGTTGGTAAAATCACTGCC 57.300 37.500 0.00 0.00 0.00 4.85
1692 5179 7.012327 TGCTATAGATGTTGGTAAAATCACTGC 59.988 37.037 3.21 0.00 0.00 4.40
1697 5184 7.715249 TGGTCTGCTATAGATGTTGGTAAAATC 59.285 37.037 3.21 0.00 37.83 2.17
1715 5202 9.643693 CTTGTTTTATCAATTTATTGGTCTGCT 57.356 29.630 2.85 0.00 38.30 4.24
1716 5203 9.638239 TCTTGTTTTATCAATTTATTGGTCTGC 57.362 29.630 2.85 0.00 38.30 4.26
1731 5218 8.974408 GTACAAAACCCACATTCTTGTTTTATC 58.026 33.333 0.00 0.00 38.47 1.75
1753 5240 3.072768 AGGAAATGGGGTTACAACGTACA 59.927 43.478 0.00 0.00 0.00 2.90
1754 5241 3.437741 CAGGAAATGGGGTTACAACGTAC 59.562 47.826 0.00 0.00 0.00 3.67
1755 5242 3.072768 ACAGGAAATGGGGTTACAACGTA 59.927 43.478 0.00 0.00 0.00 3.57
1756 5243 2.158579 ACAGGAAATGGGGTTACAACGT 60.159 45.455 0.00 0.00 0.00 3.99
1757 5244 2.486592 GACAGGAAATGGGGTTACAACG 59.513 50.000 0.00 0.00 0.00 4.10
1758 5245 3.756963 GAGACAGGAAATGGGGTTACAAC 59.243 47.826 0.00 0.00 0.00 3.32
1759 5246 3.396276 TGAGACAGGAAATGGGGTTACAA 59.604 43.478 0.00 0.00 0.00 2.41
1760 5247 2.983192 TGAGACAGGAAATGGGGTTACA 59.017 45.455 0.00 0.00 0.00 2.41
1800 5294 5.587043 TCCAACTAGTTGTCGTTGTTTTCAT 59.413 36.000 29.05 0.00 38.99 2.57
2081 5578 2.439104 GCCCTCGATCCAGAAGCCT 61.439 63.158 0.00 0.00 0.00 4.58
2138 5635 2.281484 GCCACCTCTTTGCCGTCA 60.281 61.111 0.00 0.00 0.00 4.35
2312 5809 4.054780 AGAACATATCAACGGCGTGTAT 57.945 40.909 15.70 13.03 0.00 2.29
2432 5933 2.079925 CACTGGCTCTTACTTGCTTCC 58.920 52.381 0.00 0.00 0.00 3.46
2464 5965 3.540617 TCAGCTGCAACTAACTGAACAA 58.459 40.909 9.47 0.00 36.27 2.83
2523 6024 3.698539 TGCATGTCAGAACTTTGTTCCAA 59.301 39.130 6.80 0.00 0.00 3.53
2525 6026 3.854784 GCTGCATGTCAGAACTTTGTTCC 60.855 47.826 17.76 0.00 45.72 3.62
2549 6050 4.328983 GGATTTCATTTTGATGCACTGCAG 59.671 41.667 13.48 13.48 43.65 4.41
2703 6205 8.062065 ACAAACTTTGGTCATTTTGTCTTCTA 57.938 30.769 6.47 0.00 37.58 2.10
2740 6242 1.013005 CAGCAGACACAGGCTTCTCG 61.013 60.000 0.00 0.00 38.56 4.04
2869 6371 1.499007 AGATCCCCATTACGCCCAAAT 59.501 47.619 0.00 0.00 0.00 2.32
2873 6375 3.434940 AATAAGATCCCCATTACGCCC 57.565 47.619 0.00 0.00 0.00 6.13
2923 6426 4.770795 CAGTATTCCCTCAATTTCGTCCT 58.229 43.478 0.00 0.00 0.00 3.85
2943 6446 1.933853 GACAGCTAACCATTACGGCAG 59.066 52.381 0.00 0.00 39.03 4.85
2952 6455 2.866460 GCGAAGACAAGACAGCTAACCA 60.866 50.000 0.00 0.00 0.00 3.67
3058 6561 6.317642 ACGCCAGCTATATTCAAACATTAACA 59.682 34.615 0.00 0.00 0.00 2.41
3059 6562 6.725246 ACGCCAGCTATATTCAAACATTAAC 58.275 36.000 0.00 0.00 0.00 2.01
3061 6564 6.935741 AACGCCAGCTATATTCAAACATTA 57.064 33.333 0.00 0.00 0.00 1.90
3062 6565 5.835113 AACGCCAGCTATATTCAAACATT 57.165 34.783 0.00 0.00 0.00 2.71
3063 6566 5.835113 AAACGCCAGCTATATTCAAACAT 57.165 34.783 0.00 0.00 0.00 2.71
3064 6567 5.637006 AAAACGCCAGCTATATTCAAACA 57.363 34.783 0.00 0.00 0.00 2.83
3065 6568 8.339714 TGTATAAAACGCCAGCTATATTCAAAC 58.660 33.333 0.00 0.00 0.00 2.93
3066 6569 8.439993 TGTATAAAACGCCAGCTATATTCAAA 57.560 30.769 0.00 0.00 0.00 2.69
3067 6570 8.615878 ATGTATAAAACGCCAGCTATATTCAA 57.384 30.769 0.00 0.00 0.00 2.69
3068 6571 7.875554 TGATGTATAAAACGCCAGCTATATTCA 59.124 33.333 0.00 0.00 0.00 2.57
3069 6572 8.251750 TGATGTATAAAACGCCAGCTATATTC 57.748 34.615 0.00 0.00 0.00 1.75
3070 6573 7.878127 ACTGATGTATAAAACGCCAGCTATATT 59.122 33.333 0.00 0.00 35.02 1.28
3071 6574 7.386851 ACTGATGTATAAAACGCCAGCTATAT 58.613 34.615 0.00 0.00 35.02 0.86
3072 6575 6.755206 ACTGATGTATAAAACGCCAGCTATA 58.245 36.000 0.00 0.00 35.02 1.31
3096 6599 3.628942 GCAGAATGAGATGCATGGTTGTA 59.371 43.478 2.46 0.00 42.11 2.41
3170 6674 2.241176 ACGATCCAATCAGGCCCTAAAA 59.759 45.455 0.00 0.00 37.29 1.52
3174 6678 1.832912 GACGATCCAATCAGGCCCT 59.167 57.895 0.00 0.00 37.29 5.19
3175 6679 1.595382 CGACGATCCAATCAGGCCC 60.595 63.158 0.00 0.00 37.29 5.80
3176 6680 0.462047 AACGACGATCCAATCAGGCC 60.462 55.000 0.00 0.00 37.29 5.19
3177 6681 1.327764 GAAACGACGATCCAATCAGGC 59.672 52.381 0.00 0.00 37.29 4.85
3178 6682 2.348666 GTGAAACGACGATCCAATCAGG 59.651 50.000 0.00 0.00 39.47 3.86
3179 6683 2.993220 TGTGAAACGACGATCCAATCAG 59.007 45.455 0.00 0.00 42.39 2.90
3180 6684 2.993220 CTGTGAAACGACGATCCAATCA 59.007 45.455 0.00 0.00 42.39 2.57
3181 6685 2.348666 CCTGTGAAACGACGATCCAATC 59.651 50.000 0.00 0.00 42.39 2.67
3182 6686 2.346803 CCTGTGAAACGACGATCCAAT 58.653 47.619 0.00 0.00 42.39 3.16
3183 6687 1.606994 CCCTGTGAAACGACGATCCAA 60.607 52.381 0.00 0.00 42.39 3.53
3184 6688 0.037697 CCCTGTGAAACGACGATCCA 60.038 55.000 0.00 0.00 42.39 3.41
3185 6689 0.245539 TCCCTGTGAAACGACGATCC 59.754 55.000 0.00 0.00 42.39 3.36
3186 6690 1.336517 TGTCCCTGTGAAACGACGATC 60.337 52.381 0.00 0.00 42.39 3.69
3187 6691 0.677288 TGTCCCTGTGAAACGACGAT 59.323 50.000 0.00 0.00 42.39 3.73
3188 6692 0.677288 ATGTCCCTGTGAAACGACGA 59.323 50.000 0.00 0.00 42.39 4.20
3189 6693 1.990563 GTATGTCCCTGTGAAACGACG 59.009 52.381 0.00 0.00 42.39 5.12
3190 6694 2.735134 GTGTATGTCCCTGTGAAACGAC 59.265 50.000 0.00 0.00 42.39 4.34
3191 6695 2.631062 AGTGTATGTCCCTGTGAAACGA 59.369 45.455 0.00 0.00 42.39 3.85
3192 6696 3.040147 AGTGTATGTCCCTGTGAAACG 57.960 47.619 0.00 0.00 42.39 3.60
3193 6697 4.134563 ACAAGTGTATGTCCCTGTGAAAC 58.865 43.478 0.00 0.00 37.35 2.78
3194 6698 4.431416 ACAAGTGTATGTCCCTGTGAAA 57.569 40.909 0.00 0.00 0.00 2.69
3195 6699 5.554437 TTACAAGTGTATGTCCCTGTGAA 57.446 39.130 0.00 0.00 34.75 3.18
3196 6700 5.554437 TTTACAAGTGTATGTCCCTGTGA 57.446 39.130 0.00 0.00 34.75 3.58
3197 6701 6.817765 ATTTTACAAGTGTATGTCCCTGTG 57.182 37.500 0.00 0.00 34.75 3.66
3198 6702 9.609346 GTATATTTTACAAGTGTATGTCCCTGT 57.391 33.333 0.00 0.00 34.75 4.00
3199 6703 9.607988 TGTATATTTTACAAGTGTATGTCCCTG 57.392 33.333 0.00 0.00 34.75 4.45
3200 6704 9.609346 GTGTATATTTTACAAGTGTATGTCCCT 57.391 33.333 0.00 0.00 34.75 4.20
3201 6705 9.386010 TGTGTATATTTTACAAGTGTATGTCCC 57.614 33.333 0.00 0.00 34.75 4.46
3203 6707 9.916397 GCTGTGTATATTTTACAAGTGTATGTC 57.084 33.333 0.00 0.00 34.75 3.06
3204 6708 9.667107 AGCTGTGTATATTTTACAAGTGTATGT 57.333 29.630 0.00 0.00 37.32 2.29
3206 6710 9.326413 GGAGCTGTGTATATTTTACAAGTGTAT 57.674 33.333 0.00 0.00 0.00 2.29
3207 6711 7.490079 CGGAGCTGTGTATATTTTACAAGTGTA 59.510 37.037 0.00 0.00 0.00 2.90
3208 6712 6.312918 CGGAGCTGTGTATATTTTACAAGTGT 59.687 38.462 0.00 0.00 0.00 3.55
3209 6713 6.312918 ACGGAGCTGTGTATATTTTACAAGTG 59.687 38.462 0.00 0.00 0.00 3.16
3210 6714 6.403878 ACGGAGCTGTGTATATTTTACAAGT 58.596 36.000 0.00 0.00 0.00 3.16
3211 6715 6.018994 GGACGGAGCTGTGTATATTTTACAAG 60.019 42.308 0.00 0.00 0.00 3.16
3212 6716 5.813672 GGACGGAGCTGTGTATATTTTACAA 59.186 40.000 0.00 0.00 0.00 2.41
3213 6717 5.353938 GGACGGAGCTGTGTATATTTTACA 58.646 41.667 0.00 0.00 0.00 2.41
3214 6718 4.443394 CGGACGGAGCTGTGTATATTTTAC 59.557 45.833 0.00 0.00 0.00 2.01
3215 6719 4.098349 ACGGACGGAGCTGTGTATATTTTA 59.902 41.667 0.00 0.00 0.00 1.52
3216 6720 3.118884 ACGGACGGAGCTGTGTATATTTT 60.119 43.478 0.00 0.00 0.00 1.82
3217 6721 2.429610 ACGGACGGAGCTGTGTATATTT 59.570 45.455 0.00 0.00 0.00 1.40
3218 6722 2.029623 ACGGACGGAGCTGTGTATATT 58.970 47.619 0.00 0.00 0.00 1.28
3219 6723 1.688772 ACGGACGGAGCTGTGTATAT 58.311 50.000 0.00 0.00 0.00 0.86
3220 6724 1.133598 CAACGGACGGAGCTGTGTATA 59.866 52.381 0.00 0.00 0.00 1.47
3221 6725 0.108804 CAACGGACGGAGCTGTGTAT 60.109 55.000 0.00 0.00 0.00 2.29
3222 6726 1.287815 CAACGGACGGAGCTGTGTA 59.712 57.895 0.00 0.00 0.00 2.90
3223 6727 2.029073 CAACGGACGGAGCTGTGT 59.971 61.111 0.00 0.00 0.00 3.72
3224 6728 1.157870 AAACAACGGACGGAGCTGTG 61.158 55.000 0.00 0.00 0.00 3.66
3225 6729 0.463116 AAAACAACGGACGGAGCTGT 60.463 50.000 0.00 0.00 0.00 4.40
3226 6730 0.661020 AAAAACAACGGACGGAGCTG 59.339 50.000 0.00 0.00 0.00 4.24
3227 6731 0.661020 CAAAAACAACGGACGGAGCT 59.339 50.000 0.00 0.00 0.00 4.09
3228 6732 0.379316 ACAAAAACAACGGACGGAGC 59.621 50.000 0.00 0.00 0.00 4.70
3229 6733 2.540157 GGAACAAAAACAACGGACGGAG 60.540 50.000 0.00 0.00 0.00 4.63
3230 6734 1.401199 GGAACAAAAACAACGGACGGA 59.599 47.619 0.00 0.00 0.00 4.69
3231 6735 1.132643 TGGAACAAAAACAACGGACGG 59.867 47.619 0.00 0.00 31.92 4.79
3232 6736 2.446282 CTGGAACAAAAACAACGGACG 58.554 47.619 0.00 0.00 38.70 4.79
3233 6737 2.164827 ACCTGGAACAAAAACAACGGAC 59.835 45.455 0.00 0.00 38.70 4.79
3234 6738 2.164624 CACCTGGAACAAAAACAACGGA 59.835 45.455 0.00 0.00 38.70 4.69
3235 6739 2.535331 CACCTGGAACAAAAACAACGG 58.465 47.619 0.00 0.00 38.70 4.44
3236 6740 2.164624 TCCACCTGGAACAAAAACAACG 59.835 45.455 0.00 0.00 42.18 4.10
3237 6741 3.878160 TCCACCTGGAACAAAAACAAC 57.122 42.857 0.00 0.00 42.18 3.32
3248 6752 0.321564 CAGCGTGATTTCCACCTGGA 60.322 55.000 0.00 0.00 42.76 3.86
3249 6753 0.606401 ACAGCGTGATTTCCACCTGG 60.606 55.000 13.84 0.00 42.85 4.45
3250 6754 0.518636 CACAGCGTGATTTCCACCTG 59.481 55.000 3.04 0.00 43.51 4.00
3251 6755 0.606401 CCACAGCGTGATTTCCACCT 60.606 55.000 9.75 0.00 42.76 4.00
3252 6756 1.875963 CCACAGCGTGATTTCCACC 59.124 57.895 9.75 0.00 42.76 4.61
3253 6757 1.210155 GCCACAGCGTGATTTCCAC 59.790 57.895 9.75 0.00 42.30 4.02
3254 6758 1.971167 GGCCACAGCGTGATTTCCA 60.971 57.895 0.00 0.00 41.24 3.53
3255 6759 1.675641 AGGCCACAGCGTGATTTCC 60.676 57.895 5.01 5.96 41.24 3.13
3256 6760 3.987404 AGGCCACAGCGTGATTTC 58.013 55.556 5.01 0.00 41.24 2.17
3262 6766 0.036164 TATTTCACAGGCCACAGCGT 59.964 50.000 5.01 0.00 41.24 5.07
3263 6767 0.447801 GTATTTCACAGGCCACAGCG 59.552 55.000 5.01 0.00 41.24 5.18
3264 6768 1.200020 GTGTATTTCACAGGCCACAGC 59.800 52.381 5.01 0.00 45.51 4.40
3274 6778 9.925268 CCGTATTATTTTACAGGTGTATTTCAC 57.075 33.333 0.00 0.00 45.47 3.18
3275 6779 9.111613 CCCGTATTATTTTACAGGTGTATTTCA 57.888 33.333 0.00 0.00 0.00 2.69
3276 6780 9.112725 ACCCGTATTATTTTACAGGTGTATTTC 57.887 33.333 0.00 0.00 32.76 2.17
3277 6781 8.895737 CACCCGTATTATTTTACAGGTGTATTT 58.104 33.333 8.27 0.00 42.16 1.40
3278 6782 8.441312 CACCCGTATTATTTTACAGGTGTATT 57.559 34.615 8.27 0.00 42.16 1.89
3283 6787 8.860780 TTTTACACCCGTATTATTTTACAGGT 57.139 30.769 0.00 0.00 33.97 4.00
3284 6788 9.940166 GATTTTACACCCGTATTATTTTACAGG 57.060 33.333 0.00 0.00 0.00 4.00
3291 6795 8.833493 GCTGTAAGATTTTACACCCGTATTATT 58.167 33.333 4.78 0.00 43.12 1.40
3292 6796 7.443272 GGCTGTAAGATTTTACACCCGTATTAT 59.557 37.037 4.78 0.00 43.12 1.28
3293 6797 6.762661 GGCTGTAAGATTTTACACCCGTATTA 59.237 38.462 4.78 0.00 43.12 0.98
3294 6798 5.587443 GGCTGTAAGATTTTACACCCGTATT 59.413 40.000 4.78 0.00 43.12 1.89
3295 6799 5.121105 GGCTGTAAGATTTTACACCCGTAT 58.879 41.667 4.78 0.00 43.12 3.06
3296 6800 4.020396 TGGCTGTAAGATTTTACACCCGTA 60.020 41.667 13.18 0.00 43.77 4.02
3297 6801 3.244630 TGGCTGTAAGATTTTACACCCGT 60.245 43.478 13.18 0.00 43.77 5.28
3298 6802 3.340034 TGGCTGTAAGATTTTACACCCG 58.660 45.455 13.18 3.71 43.77 5.28
3299 6803 5.298527 GGTATGGCTGTAAGATTTTACACCC 59.701 44.000 11.77 11.77 43.12 4.61
3300 6804 5.883673 TGGTATGGCTGTAAGATTTTACACC 59.116 40.000 4.78 11.17 43.12 4.16
3301 6805 6.995511 TGGTATGGCTGTAAGATTTTACAC 57.004 37.500 4.78 3.29 43.12 2.90
3302 6806 6.094881 GCTTGGTATGGCTGTAAGATTTTACA 59.905 38.462 8.42 8.42 45.15 2.41
3303 6807 6.495706 GCTTGGTATGGCTGTAAGATTTTAC 58.504 40.000 0.00 0.00 39.69 2.01
3304 6808 5.295787 CGCTTGGTATGGCTGTAAGATTTTA 59.704 40.000 0.00 0.00 34.07 1.52
3305 6809 4.096382 CGCTTGGTATGGCTGTAAGATTTT 59.904 41.667 0.00 0.00 34.07 1.82
3306 6810 3.627577 CGCTTGGTATGGCTGTAAGATTT 59.372 43.478 0.00 0.00 34.07 2.17
3307 6811 3.206150 CGCTTGGTATGGCTGTAAGATT 58.794 45.455 0.00 0.00 34.07 2.40
3308 6812 2.485479 CCGCTTGGTATGGCTGTAAGAT 60.485 50.000 0.00 0.00 34.07 2.40
3309 6813 1.134521 CCGCTTGGTATGGCTGTAAGA 60.135 52.381 0.00 0.00 34.07 2.10
3310 6814 1.134521 TCCGCTTGGTATGGCTGTAAG 60.135 52.381 0.00 0.00 0.00 2.34
3311 6815 0.906066 TCCGCTTGGTATGGCTGTAA 59.094 50.000 0.00 0.00 0.00 2.41
3312 6816 0.464036 CTCCGCTTGGTATGGCTGTA 59.536 55.000 0.00 0.00 0.00 2.74
3313 6817 1.221840 CTCCGCTTGGTATGGCTGT 59.778 57.895 0.00 0.00 0.00 4.40
3314 6818 2.182842 GCTCCGCTTGGTATGGCTG 61.183 63.158 0.00 0.00 0.00 4.85
3315 6819 2.190578 GCTCCGCTTGGTATGGCT 59.809 61.111 0.00 0.00 0.00 4.75
3316 6820 2.893682 AAGGCTCCGCTTGGTATGGC 62.894 60.000 0.00 0.00 0.00 4.40
3317 6821 0.468226 TAAGGCTCCGCTTGGTATGG 59.532 55.000 0.00 0.00 0.00 2.74
3318 6822 1.139058 ACTAAGGCTCCGCTTGGTATG 59.861 52.381 0.00 0.00 0.00 2.39
3319 6823 1.497161 ACTAAGGCTCCGCTTGGTAT 58.503 50.000 0.00 0.00 0.00 2.73
3320 6824 1.066430 CAACTAAGGCTCCGCTTGGTA 60.066 52.381 0.00 0.00 0.00 3.25
3321 6825 0.321653 CAACTAAGGCTCCGCTTGGT 60.322 55.000 0.00 0.00 0.00 3.67
3322 6826 1.026718 CCAACTAAGGCTCCGCTTGG 61.027 60.000 0.00 0.00 0.00 3.61
3323 6827 0.036388 TCCAACTAAGGCTCCGCTTG 60.036 55.000 0.00 0.00 0.00 4.01
3324 6828 0.690762 TTCCAACTAAGGCTCCGCTT 59.309 50.000 0.00 0.00 0.00 4.68
3325 6829 0.912486 ATTCCAACTAAGGCTCCGCT 59.088 50.000 0.00 0.00 0.00 5.52
3326 6830 1.751437 AATTCCAACTAAGGCTCCGC 58.249 50.000 0.00 0.00 0.00 5.54
3327 6831 5.855045 AGTATAATTCCAACTAAGGCTCCG 58.145 41.667 0.00 0.00 0.00 4.63
3429 6933 3.936902 TCACGCACTCAAAAACTGTAC 57.063 42.857 0.00 0.00 0.00 2.90
3438 6942 3.610040 AATACCTGATCACGCACTCAA 57.390 42.857 0.00 0.00 0.00 3.02
3442 6946 8.609176 TCTTTTTATAAATACCTGATCACGCAC 58.391 33.333 0.00 0.00 0.00 5.34
3464 6968 9.516546 AGGGACGAAAAGTATATTTTTCTCTTT 57.483 29.630 23.20 10.62 42.25 2.52
3465 6969 9.163899 GAGGGACGAAAAGTATATTTTTCTCTT 57.836 33.333 23.20 12.43 42.25 2.85
3466 6970 8.319146 TGAGGGACGAAAAGTATATTTTTCTCT 58.681 33.333 23.20 16.80 42.25 3.10
3467 6971 8.488651 TGAGGGACGAAAAGTATATTTTTCTC 57.511 34.615 23.20 19.27 42.25 2.87
3468 6972 8.727910 GTTGAGGGACGAAAAGTATATTTTTCT 58.272 33.333 23.20 14.36 42.25 2.52
3469 6973 8.727910 AGTTGAGGGACGAAAAGTATATTTTTC 58.272 33.333 18.62 18.62 41.44 2.29
3470 6974 8.631480 AGTTGAGGGACGAAAAGTATATTTTT 57.369 30.769 5.71 5.71 33.19 1.94
3471 6975 8.101419 AGAGTTGAGGGACGAAAAGTATATTTT 58.899 33.333 0.00 0.00 0.00 1.82
3472 6976 7.621796 AGAGTTGAGGGACGAAAAGTATATTT 58.378 34.615 0.00 0.00 0.00 1.40
3473 6977 7.184067 AGAGTTGAGGGACGAAAAGTATATT 57.816 36.000 0.00 0.00 0.00 1.28
3474 6978 6.793505 AGAGTTGAGGGACGAAAAGTATAT 57.206 37.500 0.00 0.00 0.00 0.86
3475 6979 6.395629 CAAGAGTTGAGGGACGAAAAGTATA 58.604 40.000 0.00 0.00 0.00 1.47
3476 6980 5.238583 CAAGAGTTGAGGGACGAAAAGTAT 58.761 41.667 0.00 0.00 0.00 2.12
3477 6981 4.502604 CCAAGAGTTGAGGGACGAAAAGTA 60.503 45.833 0.00 0.00 0.00 2.24
3478 6982 3.467803 CAAGAGTTGAGGGACGAAAAGT 58.532 45.455 0.00 0.00 0.00 2.66
3479 6983 2.808543 CCAAGAGTTGAGGGACGAAAAG 59.191 50.000 0.00 0.00 0.00 2.27
3480 6984 2.171870 ACCAAGAGTTGAGGGACGAAAA 59.828 45.455 0.00 0.00 0.00 2.29
3481 6985 1.766496 ACCAAGAGTTGAGGGACGAAA 59.234 47.619 0.00 0.00 0.00 3.46
3482 6986 1.070134 CACCAAGAGTTGAGGGACGAA 59.930 52.381 0.00 0.00 0.00 3.85
3483 6987 0.679505 CACCAAGAGTTGAGGGACGA 59.320 55.000 0.00 0.00 0.00 4.20
3484 6988 0.679505 TCACCAAGAGTTGAGGGACG 59.320 55.000 0.00 0.00 0.00 4.79
3485 6989 2.104963 AGTTCACCAAGAGTTGAGGGAC 59.895 50.000 0.00 0.00 0.00 4.46
3486 6990 2.368875 GAGTTCACCAAGAGTTGAGGGA 59.631 50.000 0.00 0.00 0.00 4.20
3487 6991 2.370189 AGAGTTCACCAAGAGTTGAGGG 59.630 50.000 0.00 0.00 0.00 4.30
3488 6992 3.760580 AGAGTTCACCAAGAGTTGAGG 57.239 47.619 0.00 0.00 0.00 3.86
3489 6993 5.713792 TCTAGAGTTCACCAAGAGTTGAG 57.286 43.478 0.00 0.00 0.00 3.02
3490 6994 6.672266 AATCTAGAGTTCACCAAGAGTTGA 57.328 37.500 0.00 0.00 0.00 3.18
3491 6995 6.148480 CCAAATCTAGAGTTCACCAAGAGTTG 59.852 42.308 1.66 4.38 40.24 3.16
3492 6996 6.183361 ACCAAATCTAGAGTTCACCAAGAGTT 60.183 38.462 1.66 0.00 0.00 3.01
3493 6997 5.308237 ACCAAATCTAGAGTTCACCAAGAGT 59.692 40.000 1.66 0.00 0.00 3.24
3494 6998 5.799213 ACCAAATCTAGAGTTCACCAAGAG 58.201 41.667 1.66 0.00 0.00 2.85
3495 6999 5.544176 AGACCAAATCTAGAGTTCACCAAGA 59.456 40.000 1.66 0.00 35.15 3.02
3496 7000 5.799213 AGACCAAATCTAGAGTTCACCAAG 58.201 41.667 1.66 0.00 35.15 3.61
3497 7001 5.825593 AGACCAAATCTAGAGTTCACCAA 57.174 39.130 1.66 0.00 35.15 3.67
3498 7002 5.825593 AAGACCAAATCTAGAGTTCACCA 57.174 39.130 1.66 0.00 36.27 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.