Multiple sequence alignment - TraesCS5B01G143400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G143400 chr5B 100.000 6469 0 0 1 6469 270672781 270679249 0.000000e+00 11947
1 TraesCS5B01G143400 chr5B 86.708 489 57 4 90 574 600482782 600483266 2.650000e-148 536
2 TraesCS5B01G143400 chr5A 93.227 4400 152 57 2101 6439 320264771 320269085 0.000000e+00 6340
3 TraesCS5B01G143400 chr5A 93.191 1542 72 18 576 2100 320263192 320264717 0.000000e+00 2235
4 TraesCS5B01G143400 chr5D 94.911 2024 74 9 2347 4359 234058458 234056453 0.000000e+00 3140
5 TraesCS5B01G143400 chr5D 91.529 2172 67 40 4358 6469 234056370 234054256 0.000000e+00 2883
6 TraesCS5B01G143400 chr5D 95.720 1472 46 13 640 2100 234060530 234059065 0.000000e+00 2353
7 TraesCS5B01G143400 chr5D 94.737 247 13 0 2101 2347 234059011 234058765 1.020000e-102 385
8 TraesCS5B01G143400 chr5D 84.450 373 39 9 26 397 234061581 234061227 3.710000e-92 350
9 TraesCS5B01G143400 chr5D 86.364 220 17 5 395 613 234060993 234060786 1.810000e-55 228
10 TraesCS5B01G143400 chr7B 82.609 483 54 8 93 574 700893004 700892551 3.630000e-107 399
11 TraesCS5B01G143400 chr4D 87.500 296 31 5 1036 1328 103491359 103491067 2.890000e-88 337
12 TraesCS5B01G143400 chr4D 91.327 196 17 0 2508 2703 103486176 103485981 1.070000e-67 268
13 TraesCS5B01G143400 chr4D 84.103 195 18 7 3870 4063 103484490 103484308 6.670000e-40 176
14 TraesCS5B01G143400 chr4D 90.551 127 9 2 3594 3719 103484759 103484635 1.440000e-36 165
15 TraesCS5B01G143400 chr4D 91.429 105 7 1 3339 3443 103485049 103484947 6.760000e-30 143
16 TraesCS5B01G143400 chr4D 85.185 135 20 0 4980 5114 103481781 103481647 8.750000e-29 139
17 TraesCS5B01G143400 chr4A 87.086 302 33 5 1030 1328 471695890 471696188 2.890000e-88 337
18 TraesCS5B01G143400 chr4A 90.594 202 19 0 2502 2703 471697980 471698181 1.070000e-67 268
19 TraesCS5B01G143400 chr4A 83.824 204 21 6 3861 4063 471699703 471699895 3.980000e-42 183
20 TraesCS5B01G143400 chr4A 90.323 124 9 2 3594 3716 471699444 471699565 6.710000e-35 159
21 TraesCS5B01G143400 chr4A 86.029 136 17 2 4980 5114 471704072 471704206 1.880000e-30 145
22 TraesCS5B01G143400 chr4A 89.474 114 10 1 3330 3443 471699096 471699207 6.760000e-30 143
23 TraesCS5B01G143400 chr4B 86.824 296 33 5 1036 1328 147705744 147705452 6.250000e-85 326
24 TraesCS5B01G143400 chr4B 89.286 196 21 0 2508 2703 147703476 147703281 5.010000e-61 246
25 TraesCS5B01G143400 chr4B 84.103 195 19 6 3870 4063 147701786 147701603 1.850000e-40 178
26 TraesCS5B01G143400 chr4B 89.764 127 10 2 3594 3719 147702054 147701930 6.710000e-35 159
27 TraesCS5B01G143400 chr4B 85.294 136 18 2 4980 5114 147698849 147698715 8.750000e-29 139
28 TraesCS5B01G143400 chr2A 86.735 294 37 2 282 574 647341954 647341662 6.250000e-85 326
29 TraesCS5B01G143400 chr1A 87.324 284 35 1 279 561 432017878 432018161 2.250000e-84 324


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G143400 chr5B 270672781 270679249 6468 False 11947.0 11947 100.000000 1 6469 1 chr5B.!!$F1 6468
1 TraesCS5B01G143400 chr5A 320263192 320269085 5893 False 4287.5 6340 93.209000 576 6439 2 chr5A.!!$F1 5863
2 TraesCS5B01G143400 chr5D 234054256 234061581 7325 True 1556.5 3140 91.285167 26 6469 6 chr5D.!!$R1 6443
3 TraesCS5B01G143400 chr4A 471695890 471699895 4005 False 218.0 337 88.260200 1030 4063 5 chr4A.!!$F2 3033
4 TraesCS5B01G143400 chr4B 147698715 147705744 7029 True 209.6 326 87.054200 1036 5114 5 chr4B.!!$R1 4078

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.108804 ACCATAAGCCACGTGTCGAG 60.109 55.000 15.65 0.0 0.00 4.04 F
489 728 0.609131 ATGACTTGGCTTGGTTCCGG 60.609 55.000 0.00 0.0 0.00 5.14 F
985 1471 0.808125 CACTCTCACTCTCCCACTCG 59.192 60.000 0.00 0.0 0.00 4.18 F
1953 3329 0.398522 TACTCCCAGATGGCACCGAT 60.399 55.000 0.00 0.0 0.00 4.18 F
2327 3761 1.202770 AGTCACCCCTTTCTTGTTCCG 60.203 52.381 0.00 0.0 0.00 4.30 F
3139 5490 1.412710 ACTTCGACAAGTTCAGAGGCA 59.587 47.619 0.00 0.0 40.16 4.75 F
4443 6995 0.758734 TTGTAGCCACTGACACTGCT 59.241 50.000 0.00 0.0 37.84 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1879 0.461339 GAACACCTCACCACGTGTGT 60.461 55.000 15.65 8.13 45.61 3.72 R
1953 3329 1.273759 TTTTGGCAAGGGCATATGCA 58.726 45.000 28.07 3.70 44.32 3.96 R
2315 3749 1.470098 CTGATGCCCGGAACAAGAAAG 59.530 52.381 0.73 0.00 0.00 2.62 R
3000 5351 0.179000 CTCCCTCCCACCGAAGAATG 59.821 60.000 0.00 0.00 0.00 2.67 R
3367 5719 0.687757 TCCGAGAATCTGGTCCTGGG 60.688 60.000 0.00 0.00 32.04 4.45 R
4777 9520 0.106519 CTCCTGGCATAAACCCCCAG 60.107 60.000 0.00 0.00 44.49 4.45 R
5681 10588 0.539051 AGCCAGGAAAGATGGAGACG 59.461 55.000 0.00 0.00 40.51 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.803799 CGAACATTAAAAATAACCATAAGCCAC 58.196 33.333 0.00 0.00 0.00 5.01
41 42 4.957759 AAATAACCATAAGCCACGTGTC 57.042 40.909 15.65 0.10 0.00 3.67
44 45 0.108804 ACCATAAGCCACGTGTCGAG 60.109 55.000 15.65 0.00 0.00 4.04
45 46 1.421410 CCATAAGCCACGTGTCGAGC 61.421 60.000 15.65 10.64 0.00 5.03
46 47 0.735978 CATAAGCCACGTGTCGAGCA 60.736 55.000 15.65 0.00 33.73 4.26
47 48 0.736325 ATAAGCCACGTGTCGAGCAC 60.736 55.000 15.65 7.74 44.36 4.40
48 49 2.758770 TAAGCCACGTGTCGAGCACC 62.759 60.000 15.65 0.00 44.97 5.01
75 76 0.740149 GCATCGGCATTGAATGGACA 59.260 50.000 7.35 0.00 40.72 4.02
86 87 3.334583 TGAATGGACAGTGAAGGCTAC 57.665 47.619 0.00 0.00 0.00 3.58
91 92 1.000506 GGACAGTGAAGGCTACGTTCA 59.999 52.381 0.00 0.00 36.18 3.18
92 93 2.329379 GACAGTGAAGGCTACGTTCAG 58.671 52.381 0.00 0.00 38.60 3.02
105 106 5.109903 GCTACGTTCAGATGGTTCTTATGT 58.890 41.667 0.00 0.00 0.00 2.29
172 173 4.446371 AGGGTGCTATCATTTTCTCTTCG 58.554 43.478 0.00 0.00 0.00 3.79
178 179 4.568359 GCTATCATTTTCTCTTCGTGCAGA 59.432 41.667 0.00 0.00 0.00 4.26
179 180 4.935885 ATCATTTTCTCTTCGTGCAGAC 57.064 40.909 0.00 0.00 0.00 3.51
189 190 3.938963 TCTTCGTGCAGACAACTCTTTTT 59.061 39.130 0.00 0.00 0.00 1.94
219 220 7.436970 TCGAGATGCGCTTAAAACTGAATTATA 59.563 33.333 9.73 0.00 40.61 0.98
240 241 9.618890 ATTATATATGTACATGCATGGAAGGAC 57.381 33.333 29.41 18.09 0.00 3.85
241 242 3.939740 ATGTACATGCATGGAAGGACT 57.060 42.857 29.41 10.09 0.00 3.85
242 243 6.686484 ATATGTACATGCATGGAAGGACTA 57.314 37.500 29.41 9.07 0.00 2.59
243 244 5.573380 ATGTACATGCATGGAAGGACTAT 57.427 39.130 29.41 8.64 0.00 2.12
244 245 4.960938 TGTACATGCATGGAAGGACTATC 58.039 43.478 29.41 8.21 0.00 2.08
245 246 3.117491 ACATGCATGGAAGGACTATCG 57.883 47.619 29.41 0.88 0.00 2.92
263 264 1.196808 TCGTTCGCCATTCAAAGAAGC 59.803 47.619 0.00 0.00 0.00 3.86
290 291 3.584406 TGCCAATAAGGATCGAGATGGAT 59.416 43.478 7.20 0.00 41.22 3.41
293 294 5.798132 CCAATAAGGATCGAGATGGATTCA 58.202 41.667 0.00 0.00 41.22 2.57
326 327 4.393371 GTGAAACTGATCCAAGCTAAGGAC 59.607 45.833 9.80 5.64 38.13 3.85
334 335 4.811969 TCCAAGCTAAGGACGTTGATAA 57.188 40.909 3.79 0.00 0.00 1.75
347 348 5.449588 GGACGTTGATAAACCGATCTACTCA 60.450 44.000 0.00 0.00 31.75 3.41
349 350 6.207213 ACGTTGATAAACCGATCTACTCATC 58.793 40.000 0.00 0.00 31.75 2.92
355 356 1.604755 ACCGATCTACTCATCGCTCAC 59.395 52.381 0.00 0.00 43.66 3.51
356 357 1.876799 CCGATCTACTCATCGCTCACT 59.123 52.381 0.00 0.00 43.66 3.41
358 359 3.687212 CCGATCTACTCATCGCTCACTAT 59.313 47.826 0.00 0.00 43.66 2.12
368 369 5.316987 TCATCGCTCACTATGGAGATTAGA 58.683 41.667 0.00 0.00 37.05 2.10
370 371 7.112779 TCATCGCTCACTATGGAGATTAGATA 58.887 38.462 0.00 0.00 37.05 1.98
374 375 7.831690 TCGCTCACTATGGAGATTAGATATCTT 59.168 37.037 11.25 0.00 37.05 2.40
475 714 4.273318 GTTTAGGGGCAAGAATCATGACT 58.727 43.478 0.00 0.00 0.00 3.41
487 726 1.909700 TCATGACTTGGCTTGGTTCC 58.090 50.000 0.00 0.00 0.00 3.62
489 728 0.609131 ATGACTTGGCTTGGTTCCGG 60.609 55.000 0.00 0.00 0.00 5.14
490 729 1.228154 GACTTGGCTTGGTTCCGGT 60.228 57.895 0.00 0.00 0.00 5.28
491 730 1.228154 ACTTGGCTTGGTTCCGGTC 60.228 57.895 0.00 0.00 0.00 4.79
492 731 1.971695 CTTGGCTTGGTTCCGGTCC 60.972 63.158 0.00 6.41 0.00 4.46
493 732 2.411765 CTTGGCTTGGTTCCGGTCCT 62.412 60.000 16.54 0.00 0.00 3.85
494 733 2.046217 GGCTTGGTTCCGGTCCTC 60.046 66.667 16.54 8.03 0.00 3.71
495 734 2.747686 GCTTGGTTCCGGTCCTCA 59.252 61.111 16.54 3.38 0.00 3.86
496 735 1.299976 GCTTGGTTCCGGTCCTCAT 59.700 57.895 16.54 0.00 0.00 2.90
516 755 1.009829 GTTGCTATCGACCTTGCTGG 58.990 55.000 0.00 0.00 42.93 4.85
520 759 1.606737 GCTATCGACCTTGCTGGGATC 60.607 57.143 0.00 0.00 41.11 3.36
523 762 1.519455 CGACCTTGCTGGGATCGAC 60.519 63.158 0.00 0.00 41.11 4.20
527 766 0.824109 CCTTGCTGGGATCGACTGTA 59.176 55.000 0.00 0.00 0.00 2.74
601 840 3.098032 GGTGAAGTCGACCGTACAC 57.902 57.895 13.01 15.91 0.00 2.90
622 1098 5.046159 ACACAGGGTCGACAAAAATATCCTA 60.046 40.000 18.91 0.00 0.00 2.94
668 1144 1.682257 GGCAAGAGCAAGACCCTCT 59.318 57.895 0.00 0.00 44.61 3.69
706 1182 3.560239 CCGACCATGATAGCTCCTCTAGA 60.560 52.174 0.00 0.00 0.00 2.43
712 1188 6.186957 CCATGATAGCTCCTCTAGACTATGT 58.813 44.000 5.56 0.00 29.88 2.29
957 1443 4.248842 CACACTCACCCCCGCACA 62.249 66.667 0.00 0.00 0.00 4.57
958 1444 4.250305 ACACTCACCCCCGCACAC 62.250 66.667 0.00 0.00 0.00 3.82
985 1471 0.808125 CACTCTCACTCTCCCACTCG 59.192 60.000 0.00 0.00 0.00 4.18
1353 1852 5.397786 GGTCGTTAATTACCCCATCCCTTTA 60.398 44.000 0.00 0.00 0.00 1.85
1520 2022 4.024218 GCTTGAGCTATGTTTGCCTAGATG 60.024 45.833 0.00 0.00 38.21 2.90
1646 2547 7.010552 GTGATAATGCGCTAAATATCCGAATCT 59.989 37.037 9.73 0.00 0.00 2.40
1935 3311 2.037641 CCATGGCGATGATCCTTGTCTA 59.962 50.000 10.66 0.00 0.00 2.59
1953 3329 0.398522 TACTCCCAGATGGCACCGAT 60.399 55.000 0.00 0.00 0.00 4.18
2040 3416 3.247006 ACAGACATTGTCGGTATGGAC 57.753 47.619 19.06 0.00 38.99 4.02
2060 3436 5.047377 TGGACTCTGCTTTTGTTTTCTGTTT 60.047 36.000 0.00 0.00 0.00 2.83
2067 3443 7.915397 TCTGCTTTTGTTTTCTGTTTCTGTATC 59.085 33.333 0.00 0.00 0.00 2.24
2272 3706 8.935844 CGAAATAGTGCCATATTATTAAGAGCA 58.064 33.333 0.00 0.00 0.00 4.26
2301 3735 5.779806 AGGAACAATCGAATAAGTTGTCG 57.220 39.130 2.06 4.82 35.19 4.35
2315 3749 2.047179 GTCGCCAAGAGTCACCCC 60.047 66.667 0.00 0.00 0.00 4.95
2327 3761 1.202770 AGTCACCCCTTTCTTGTTCCG 60.203 52.381 0.00 0.00 0.00 4.30
2335 3769 1.470098 CTTTCTTGTTCCGGGCATCAG 59.530 52.381 0.00 0.00 0.00 2.90
2445 4187 2.618709 GGGAACCGGTGAATTGATCATC 59.381 50.000 8.52 0.00 40.86 2.92
2847 4603 8.577296 CATCTATATTAGTCCCTCTGAAAACGA 58.423 37.037 0.00 0.00 0.00 3.85
3139 5490 1.412710 ACTTCGACAAGTTCAGAGGCA 59.587 47.619 0.00 0.00 40.16 4.75
3367 5719 4.266714 TGTAAGCTTTACCAATGTAGGGC 58.733 43.478 3.20 0.00 0.00 5.19
3512 5917 4.708726 ATTTGCATGTTGGCTCTACTTC 57.291 40.909 0.00 0.00 34.04 3.01
3552 5994 2.712057 AGGAAGCAATCAAGCAAACG 57.288 45.000 0.00 0.00 36.85 3.60
3859 6317 9.495754 GTCTAGATTTTGCTGTTGATGTTTATC 57.504 33.333 0.00 0.00 0.00 1.75
4002 6460 7.397892 TTTCAAAAGACATGGTGAGTTGTAA 57.602 32.000 0.00 0.00 0.00 2.41
4158 6625 5.317808 ACATGTATCCTAGTATGTCGAGCT 58.682 41.667 0.00 0.00 0.00 4.09
4194 6661 1.261480 GTCAGTCTGCCTTCTCCTCA 58.739 55.000 0.00 0.00 0.00 3.86
4246 6714 2.031919 TGCTTGGCCTACACACCG 59.968 61.111 3.32 0.00 0.00 4.94
4381 6933 9.151177 TCTAGTTCTTTAAAGGAGGTAGAAACA 57.849 33.333 15.13 1.47 0.00 2.83
4436 6988 3.196901 ACCGTCATTATTGTAGCCACTGA 59.803 43.478 0.00 0.00 0.00 3.41
4438 6990 4.180817 CGTCATTATTGTAGCCACTGACA 58.819 43.478 3.35 0.00 32.98 3.58
4439 6991 4.032900 CGTCATTATTGTAGCCACTGACAC 59.967 45.833 3.35 0.00 32.98 3.67
4440 6992 5.178797 GTCATTATTGTAGCCACTGACACT 58.821 41.667 0.00 0.00 33.49 3.55
4441 6993 5.063944 GTCATTATTGTAGCCACTGACACTG 59.936 44.000 0.00 0.00 33.49 3.66
4442 6994 1.813513 ATTGTAGCCACTGACACTGC 58.186 50.000 0.00 0.00 0.00 4.40
4443 6995 0.758734 TTGTAGCCACTGACACTGCT 59.241 50.000 0.00 0.00 37.84 4.24
4459 7011 2.563179 ACTGCTACCACCAACTCTACTG 59.437 50.000 0.00 0.00 0.00 2.74
4482 7034 9.835389 ACTGTTTGTAGTACCAATTACTAAACA 57.165 29.630 9.57 9.57 43.59 2.83
4700 7307 8.031864 CAGCTAGGTTTGAGGTAGATATATGTG 58.968 40.741 0.00 0.00 0.00 3.21
4766 9509 9.402320 TGCAATTTTAGCTACAAATATCAGGTA 57.598 29.630 11.69 0.00 0.00 3.08
4867 9728 2.293399 AGTCGTTCAAGGAACAATTGCC 59.707 45.455 5.05 0.00 42.05 4.52
4899 9760 3.529634 TTTTGCGAAGGTAATCACGTG 57.470 42.857 9.94 9.94 0.00 4.49
4903 9764 1.403780 GCGAAGGTAATCACGTGGAGT 60.404 52.381 17.00 4.47 0.00 3.85
5013 9877 1.852309 TCCATATGCTGTCCCAATGGT 59.148 47.619 0.00 0.00 38.58 3.55
5053 9917 6.070656 CAGATTGGAAAGCCCTTTGGATATA 58.929 40.000 0.00 0.00 27.83 0.86
5108 9972 2.119495 ACCATGAAGCCTACCAGGTAG 58.881 52.381 18.89 18.89 37.80 3.18
5249 10118 1.760192 ATTGATGCTCTGGTGAAGCC 58.240 50.000 0.00 0.00 37.90 4.35
5260 10149 5.686124 GCTCTGGTGAAGCCTTCTTATGTAT 60.686 44.000 5.96 0.00 38.35 2.29
5313 10202 3.065655 CCTGCTATGTCTTATGCTCTGC 58.934 50.000 0.00 0.00 0.00 4.26
5482 10389 6.413783 TGGAGAGTAGTTTGTGAACATACA 57.586 37.500 6.77 0.00 38.26 2.29
5483 10390 7.004555 TGGAGAGTAGTTTGTGAACATACAT 57.995 36.000 6.77 0.00 38.26 2.29
5484 10391 7.450074 TGGAGAGTAGTTTGTGAACATACATT 58.550 34.615 6.77 0.00 38.26 2.71
5485 10392 7.936847 TGGAGAGTAGTTTGTGAACATACATTT 59.063 33.333 6.77 0.00 38.26 2.32
5486 10393 8.784043 GGAGAGTAGTTTGTGAACATACATTTT 58.216 33.333 6.77 0.00 38.26 1.82
5487 10394 9.599322 GAGAGTAGTTTGTGAACATACATTTTG 57.401 33.333 6.77 0.00 38.26 2.44
5488 10395 9.337396 AGAGTAGTTTGTGAACATACATTTTGA 57.663 29.630 6.77 0.00 38.26 2.69
5489 10396 9.599322 GAGTAGTTTGTGAACATACATTTTGAG 57.401 33.333 6.77 0.00 38.26 3.02
5490 10397 9.337396 AGTAGTTTGTGAACATACATTTTGAGA 57.663 29.630 6.77 0.00 38.26 3.27
5609 10516 0.953471 TGTGATGCAACCACGCCTAC 60.953 55.000 15.04 0.00 37.34 3.18
5620 10527 1.393603 CACGCCTACTGAGATCCAGA 58.606 55.000 15.51 2.35 45.78 3.86
5635 10542 2.276732 CCAGACAGTGGTGGTGATTT 57.723 50.000 5.76 0.00 42.17 2.17
5636 10543 3.417069 CCAGACAGTGGTGGTGATTTA 57.583 47.619 5.76 0.00 42.17 1.40
5637 10544 3.338249 CCAGACAGTGGTGGTGATTTAG 58.662 50.000 5.76 0.00 42.17 1.85
5638 10545 3.338249 CAGACAGTGGTGGTGATTTAGG 58.662 50.000 0.00 0.00 0.00 2.69
5639 10546 2.979678 AGACAGTGGTGGTGATTTAGGT 59.020 45.455 0.00 0.00 0.00 3.08
5640 10547 3.074412 GACAGTGGTGGTGATTTAGGTG 58.926 50.000 0.00 0.00 0.00 4.00
5641 10548 2.708861 ACAGTGGTGGTGATTTAGGTGA 59.291 45.455 0.00 0.00 0.00 4.02
5642 10549 3.074412 CAGTGGTGGTGATTTAGGTGAC 58.926 50.000 0.00 0.00 0.00 3.67
5643 10550 2.073816 GTGGTGGTGATTTAGGTGACG 58.926 52.381 0.00 0.00 0.00 4.35
5644 10551 1.972075 TGGTGGTGATTTAGGTGACGA 59.028 47.619 0.00 0.00 0.00 4.20
5681 10588 1.202722 TGTTTCCTCCGTCCACTTTCC 60.203 52.381 0.00 0.00 0.00 3.13
5746 10654 1.681264 GCCTGCTGTTACCACAAGTTT 59.319 47.619 0.00 0.00 30.36 2.66
6017 10926 2.297315 TGACATCTCGGTATCTGATGGC 59.703 50.000 0.00 7.48 44.18 4.40
6100 11009 4.712425 GCTGCCAAGTTGCTGCGG 62.712 66.667 8.19 8.19 44.41 5.69
6194 11103 1.054231 CATCTGGGCATGCTCTCCTA 58.946 55.000 20.42 1.43 0.00 2.94
6237 11146 1.341080 CCATTGTTTTGCCTCCCTGT 58.659 50.000 0.00 0.00 0.00 4.00
6239 11148 2.104622 CCATTGTTTTGCCTCCCTGTTT 59.895 45.455 0.00 0.00 0.00 2.83
6246 11155 0.843309 TGCCTCCCTGTTTTGTCTCA 59.157 50.000 0.00 0.00 0.00 3.27
6292 11202 0.888619 GCTTAGTTTTCTGGGTGGCC 59.111 55.000 0.00 0.00 0.00 5.36
6330 11240 2.230025 AGTCGATGAACTGGAGTGTCTG 59.770 50.000 0.00 0.00 0.00 3.51
6334 11244 3.809832 CGATGAACTGGAGTGTCTGTTTT 59.190 43.478 0.00 0.00 0.00 2.43
6383 11293 5.076458 TCCTGGGAAGATCTATCTATGGACA 59.924 44.000 0.00 0.00 35.76 4.02
6443 11357 1.338973 CTCATTTGCATCCGGGATTGG 59.661 52.381 6.84 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.400638 GTTATTTTTAATGTTCGTGTGGATGAA 57.599 29.630 0.00 0.00 0.00 2.57
1 2 8.024285 GGTTATTTTTAATGTTCGTGTGGATGA 58.976 33.333 0.00 0.00 0.00 2.92
2 3 7.810282 TGGTTATTTTTAATGTTCGTGTGGATG 59.190 33.333 0.00 0.00 0.00 3.51
3 4 7.887381 TGGTTATTTTTAATGTTCGTGTGGAT 58.113 30.769 0.00 0.00 0.00 3.41
4 5 7.273320 TGGTTATTTTTAATGTTCGTGTGGA 57.727 32.000 0.00 0.00 0.00 4.02
5 6 9.627395 TTATGGTTATTTTTAATGTTCGTGTGG 57.373 29.630 0.00 0.00 0.00 4.17
7 8 9.349145 GCTTATGGTTATTTTTAATGTTCGTGT 57.651 29.630 0.00 0.00 0.00 4.49
8 9 8.803799 GGCTTATGGTTATTTTTAATGTTCGTG 58.196 33.333 0.00 0.00 0.00 4.35
9 10 8.524487 TGGCTTATGGTTATTTTTAATGTTCGT 58.476 29.630 0.00 0.00 0.00 3.85
10 11 8.803799 GTGGCTTATGGTTATTTTTAATGTTCG 58.196 33.333 0.00 0.00 0.00 3.95
11 12 8.803799 CGTGGCTTATGGTTATTTTTAATGTTC 58.196 33.333 0.00 0.00 0.00 3.18
12 13 8.308207 ACGTGGCTTATGGTTATTTTTAATGTT 58.692 29.630 0.00 0.00 0.00 2.71
13 14 7.757624 CACGTGGCTTATGGTTATTTTTAATGT 59.242 33.333 7.95 0.00 0.00 2.71
14 15 7.757624 ACACGTGGCTTATGGTTATTTTTAATG 59.242 33.333 21.57 0.00 0.00 1.90
15 16 7.832769 ACACGTGGCTTATGGTTATTTTTAAT 58.167 30.769 21.57 0.00 0.00 1.40
16 17 7.216973 ACACGTGGCTTATGGTTATTTTTAA 57.783 32.000 21.57 0.00 0.00 1.52
17 18 6.402334 CGACACGTGGCTTATGGTTATTTTTA 60.402 38.462 21.24 0.00 0.00 1.52
18 19 5.618195 CGACACGTGGCTTATGGTTATTTTT 60.618 40.000 21.24 0.00 0.00 1.94
19 20 4.142773 CGACACGTGGCTTATGGTTATTTT 60.143 41.667 21.24 0.00 0.00 1.82
20 21 3.372822 CGACACGTGGCTTATGGTTATTT 59.627 43.478 21.24 0.00 0.00 1.40
21 22 2.933906 CGACACGTGGCTTATGGTTATT 59.066 45.455 21.24 0.00 0.00 1.40
22 23 2.166870 TCGACACGTGGCTTATGGTTAT 59.833 45.455 21.24 0.00 0.00 1.89
23 24 1.545136 TCGACACGTGGCTTATGGTTA 59.455 47.619 21.24 0.00 0.00 2.85
24 25 0.319083 TCGACACGTGGCTTATGGTT 59.681 50.000 21.24 0.00 0.00 3.67
41 42 1.538276 GATGCATTTTTCGGTGCTCG 58.462 50.000 0.00 0.00 41.78 5.03
75 76 2.093973 CCATCTGAACGTAGCCTTCACT 60.094 50.000 0.00 0.00 0.00 3.41
86 87 4.421058 TCGACATAAGAACCATCTGAACG 58.579 43.478 0.00 0.00 35.59 3.95
91 92 4.039730 CCATCCTCGACATAAGAACCATCT 59.960 45.833 0.00 0.00 37.57 2.90
92 93 4.039245 TCCATCCTCGACATAAGAACCATC 59.961 45.833 0.00 0.00 0.00 3.51
105 106 3.295273 CCGCCGATCCATCCTCGA 61.295 66.667 0.00 0.00 38.38 4.04
189 190 3.496884 AGTTTTAAGCGCATCTCGACAAA 59.503 39.130 11.47 0.00 41.67 2.83
190 191 3.064207 AGTTTTAAGCGCATCTCGACAA 58.936 40.909 11.47 0.00 41.67 3.18
219 220 5.573380 AGTCCTTCCATGCATGTACATAT 57.427 39.130 24.58 0.00 0.00 1.78
221 222 3.939740 AGTCCTTCCATGCATGTACAT 57.060 42.857 24.58 1.41 0.00 2.29
222 223 4.501400 CGATAGTCCTTCCATGCATGTACA 60.501 45.833 24.58 0.00 0.00 2.90
223 224 3.990469 CGATAGTCCTTCCATGCATGTAC 59.010 47.826 24.58 13.83 0.00 2.90
224 225 4.257267 CGATAGTCCTTCCATGCATGTA 57.743 45.455 24.58 6.94 0.00 2.29
225 226 3.117491 CGATAGTCCTTCCATGCATGT 57.883 47.619 24.58 7.41 0.00 3.21
240 241 4.783450 GCTTCTTTGAATGGCGAACGATAG 60.783 45.833 0.00 0.00 46.19 2.08
241 242 3.063452 GCTTCTTTGAATGGCGAACGATA 59.937 43.478 0.00 0.00 0.00 2.92
242 243 2.159517 GCTTCTTTGAATGGCGAACGAT 60.160 45.455 0.00 0.00 0.00 3.73
243 244 1.196808 GCTTCTTTGAATGGCGAACGA 59.803 47.619 0.00 0.00 0.00 3.85
244 245 1.606606 GCTTCTTTGAATGGCGAACG 58.393 50.000 0.00 0.00 0.00 3.95
263 264 2.797156 CTCGATCCTTATTGGCAAGTCG 59.203 50.000 5.96 8.50 35.26 4.18
267 268 3.390967 TCCATCTCGATCCTTATTGGCAA 59.609 43.478 0.68 0.68 35.26 4.52
273 274 6.678568 AAGTGAATCCATCTCGATCCTTAT 57.321 37.500 0.00 0.00 0.00 1.73
275 276 6.678568 ATAAGTGAATCCATCTCGATCCTT 57.321 37.500 0.00 0.00 0.00 3.36
276 277 6.462500 CAATAAGTGAATCCATCTCGATCCT 58.538 40.000 0.00 0.00 0.00 3.24
277 278 5.121454 GCAATAAGTGAATCCATCTCGATCC 59.879 44.000 0.00 0.00 0.00 3.36
293 294 5.316167 TGGATCAGTTTCACAGCAATAAGT 58.684 37.500 0.00 0.00 0.00 2.24
326 327 5.339875 CGATGAGTAGATCGGTTTATCAACG 59.660 44.000 0.00 0.00 41.29 4.10
347 348 7.998383 AGATATCTAATCTCCATAGTGAGCGAT 59.002 37.037 2.53 0.00 32.22 4.58
349 350 7.566760 AGATATCTAATCTCCATAGTGAGCG 57.433 40.000 2.53 0.00 32.22 5.03
449 688 1.671328 GATTCTTGCCCCTAAACGAGC 59.329 52.381 0.00 0.00 0.00 5.03
459 698 1.135721 GCCAAGTCATGATTCTTGCCC 59.864 52.381 16.80 8.85 39.47 5.36
475 714 2.114411 GGACCGGAACCAAGCCAA 59.886 61.111 9.46 0.00 0.00 4.52
487 726 1.067060 TCGATAGCAACATGAGGACCG 59.933 52.381 0.00 0.00 0.00 4.79
489 728 2.101582 AGGTCGATAGCAACATGAGGAC 59.898 50.000 0.00 0.00 0.00 3.85
490 729 2.388735 AGGTCGATAGCAACATGAGGA 58.611 47.619 0.00 0.00 0.00 3.71
491 730 2.868583 CAAGGTCGATAGCAACATGAGG 59.131 50.000 0.00 0.00 0.00 3.86
492 731 2.286294 GCAAGGTCGATAGCAACATGAG 59.714 50.000 0.00 0.00 0.00 2.90
493 732 2.093500 AGCAAGGTCGATAGCAACATGA 60.093 45.455 0.00 0.00 0.00 3.07
494 733 2.031314 CAGCAAGGTCGATAGCAACATG 59.969 50.000 0.00 0.00 0.00 3.21
495 734 2.283298 CAGCAAGGTCGATAGCAACAT 58.717 47.619 0.00 0.00 0.00 2.71
496 735 1.675714 CCAGCAAGGTCGATAGCAACA 60.676 52.381 0.00 0.00 0.00 3.33
516 755 5.235516 TCAAAAGGTCTTTACAGTCGATCC 58.764 41.667 0.00 0.00 31.63 3.36
520 759 6.954944 TCAAATCAAAAGGTCTTTACAGTCG 58.045 36.000 0.00 0.00 31.63 4.18
527 766 7.725251 TGCATTACTCAAATCAAAAGGTCTTT 58.275 30.769 0.00 0.00 0.00 2.52
570 809 3.250040 CGACTTCACCGTCCATTCTTTTT 59.750 43.478 0.00 0.00 0.00 1.94
571 810 2.806244 CGACTTCACCGTCCATTCTTTT 59.194 45.455 0.00 0.00 0.00 2.27
572 811 2.036733 TCGACTTCACCGTCCATTCTTT 59.963 45.455 0.00 0.00 0.00 2.52
573 812 1.616865 TCGACTTCACCGTCCATTCTT 59.383 47.619 0.00 0.00 0.00 2.52
574 813 1.067776 GTCGACTTCACCGTCCATTCT 60.068 52.381 8.70 0.00 0.00 2.40
590 829 3.672293 GACCCTGTGTACGGTCGA 58.328 61.111 2.42 0.00 39.29 4.20
601 840 6.995511 TTTAGGATATTTTTGTCGACCCTG 57.004 37.500 14.12 0.00 0.00 4.45
622 1098 0.527565 GCCATGGTTGCTGTCGATTT 59.472 50.000 14.67 0.00 0.00 2.17
728 1204 0.398522 TGTGTCAGTGGTCCCTCTGT 60.399 55.000 13.47 0.00 38.33 3.41
729 1205 0.979665 ATGTGTCAGTGGTCCCTCTG 59.020 55.000 8.73 8.73 38.47 3.35
782 1261 3.668980 TAGCGGGGCTGCGGTTTAC 62.669 63.158 0.00 0.00 40.10 2.01
985 1471 0.253044 TCCATAGTGACAAGCAGGCC 59.747 55.000 0.00 0.00 0.00 5.19
1345 1844 1.768870 ACAGCCGCTACATAAAGGGAT 59.231 47.619 0.00 0.00 0.00 3.85
1380 1879 0.461339 GAACACCTCACCACGTGTGT 60.461 55.000 15.65 8.13 45.61 3.72
1520 2022 3.054878 CAGCAATTGTTTCTCCAGCAAC 58.945 45.455 7.40 0.00 0.00 4.17
1609 2401 4.058124 GCGCATTATCACAGTCTATCCAA 58.942 43.478 0.30 0.00 0.00 3.53
1646 2547 8.084684 TGCTACATAATTTGCACACACATTTAA 58.915 29.630 0.00 0.00 29.26 1.52
1935 3311 1.690633 ATCGGTGCCATCTGGGAGT 60.691 57.895 0.00 0.00 40.01 3.85
1953 3329 1.273759 TTTTGGCAAGGGCATATGCA 58.726 45.000 28.07 3.70 44.32 3.96
2040 3416 6.095377 ACAGAAACAGAAAACAAAAGCAGAG 58.905 36.000 0.00 0.00 0.00 3.35
2060 3436 6.684686 AGCAAACGTTAACAGTAGATACAGA 58.315 36.000 0.00 0.00 0.00 3.41
2067 3443 6.289745 TGGTAAAGCAAACGTTAACAGTAG 57.710 37.500 0.00 3.28 33.31 2.57
2167 3601 9.553064 AATGATAGTCTCATGAACAAATAGGTC 57.447 33.333 0.00 0.00 44.03 3.85
2272 3706 6.238648 ACTTATTCGATTGTTCCTTCCTTGT 58.761 36.000 0.00 0.00 0.00 3.16
2315 3749 1.470098 CTGATGCCCGGAACAAGAAAG 59.530 52.381 0.73 0.00 0.00 2.62
2327 3761 4.210331 ACTTTATGTTGGATCTGATGCCC 58.790 43.478 6.70 0.00 0.00 5.36
2359 4100 7.224297 TCCTGGCCAGTAAATAGAATAATCAC 58.776 38.462 30.63 0.00 0.00 3.06
2445 4187 6.776094 GCCACAAGCAGTTTCTTTACTATAG 58.224 40.000 0.00 0.00 42.97 1.31
2465 4207 6.414987 GTGAGAATAAATATTTTCGCTGCCAC 59.585 38.462 5.91 3.69 35.59 5.01
2770 4513 2.637872 AGACTAGGTGCCAACTGCTAAA 59.362 45.455 0.00 0.00 42.00 1.85
2819 4575 6.859112 TTCAGAGGGACTAATATAGATGGC 57.141 41.667 0.00 0.00 41.55 4.40
2872 5216 2.563179 GGAACTCAAGGTAGCACTCTCA 59.437 50.000 0.00 0.00 0.00 3.27
3000 5351 0.179000 CTCCCTCCCACCGAAGAATG 59.821 60.000 0.00 0.00 0.00 2.67
3001 5352 0.252742 ACTCCCTCCCACCGAAGAAT 60.253 55.000 0.00 0.00 0.00 2.40
3074 5425 0.451783 GCCACACTTCCGCAATTAGG 59.548 55.000 0.00 0.00 0.00 2.69
3077 5428 1.959085 CTGCCACACTTCCGCAATT 59.041 52.632 0.00 0.00 30.85 2.32
3189 5541 8.433421 AGATAACTGAATAACAAACATACGGG 57.567 34.615 0.00 0.00 0.00 5.28
3367 5719 0.687757 TCCGAGAATCTGGTCCTGGG 60.688 60.000 0.00 0.00 32.04 4.45
3859 6317 6.696148 GTCCTCGTGTAGAACTAACCAATATG 59.304 42.308 0.00 0.00 0.00 1.78
4002 6460 8.688151 GTCATGGTTTAGAGTAGAGTAGACAAT 58.312 37.037 0.00 0.00 0.00 2.71
4068 6526 6.476378 AGTGCAGTGTTCAAGGAAATAGTAT 58.524 36.000 0.00 0.00 0.00 2.12
4148 6615 4.744570 CCTTACAAAGACAGCTCGACATA 58.255 43.478 0.00 0.00 0.00 2.29
4150 6617 2.866460 GCCTTACAAAGACAGCTCGACA 60.866 50.000 0.00 0.00 0.00 4.35
4158 6625 1.689813 TGACCGAGCCTTACAAAGACA 59.310 47.619 0.00 0.00 0.00 3.41
4246 6714 1.008079 GCAGCAAAGCCACTGACAC 60.008 57.895 0.00 0.00 35.90 3.67
4284 6752 7.692460 ACACAAATCATGACAAGTATCACAT 57.308 32.000 0.00 0.00 0.00 3.21
4381 6933 2.114506 CCCTCCCACCTCCCTATTCTAT 59.885 54.545 0.00 0.00 0.00 1.98
4436 6988 1.424638 AGAGTTGGTGGTAGCAGTGT 58.575 50.000 0.00 0.00 0.00 3.55
4438 6990 2.563179 CAGTAGAGTTGGTGGTAGCAGT 59.437 50.000 0.00 0.00 0.00 4.40
4439 6991 2.563179 ACAGTAGAGTTGGTGGTAGCAG 59.437 50.000 0.00 0.00 0.00 4.24
4440 6992 2.605257 ACAGTAGAGTTGGTGGTAGCA 58.395 47.619 0.00 0.00 0.00 3.49
4441 6993 3.679824 AACAGTAGAGTTGGTGGTAGC 57.320 47.619 0.00 0.00 0.00 3.58
4442 6994 4.957296 ACAAACAGTAGAGTTGGTGGTAG 58.043 43.478 0.00 0.00 34.44 3.18
4563 7123 3.670625 AGTCAAGCCAGCACGTATTAAA 58.329 40.909 0.00 0.00 0.00 1.52
4564 7124 3.328382 AGTCAAGCCAGCACGTATTAA 57.672 42.857 0.00 0.00 0.00 1.40
4565 7125 3.000041 CAAGTCAAGCCAGCACGTATTA 59.000 45.455 0.00 0.00 0.00 0.98
4700 7307 2.859165 TGGTTCAATCCACAGTCCTC 57.141 50.000 0.00 0.00 31.96 3.71
4731 9474 5.415389 TGTAGCTAAAATTGCAGCTCATGAA 59.585 36.000 15.34 0.00 44.83 2.57
4755 9498 7.124147 CCCAGAAACCACAAATACCTGATATTT 59.876 37.037 0.00 0.00 43.08 1.40
4766 9509 2.487746 AACCCCCAGAAACCACAAAT 57.512 45.000 0.00 0.00 0.00 2.32
4767 9510 2.255770 AAACCCCCAGAAACCACAAA 57.744 45.000 0.00 0.00 0.00 2.83
4769 9512 2.883026 CATAAACCCCCAGAAACCACA 58.117 47.619 0.00 0.00 0.00 4.17
4770 9513 1.548719 GCATAAACCCCCAGAAACCAC 59.451 52.381 0.00 0.00 0.00 4.16
4772 9515 1.191535 GGCATAAACCCCCAGAAACC 58.808 55.000 0.00 0.00 0.00 3.27
4773 9516 1.931635 TGGCATAAACCCCCAGAAAC 58.068 50.000 0.00 0.00 0.00 2.78
4777 9520 0.106519 CTCCTGGCATAAACCCCCAG 60.107 60.000 0.00 0.00 44.49 4.45
4867 9728 3.419915 CTTCGCAAAATCCATGTTCTCG 58.580 45.455 0.00 0.00 0.00 4.04
4928 9789 6.137559 TGTTAGGTTCCACATTAGGGTTTTT 58.862 36.000 0.00 0.00 0.00 1.94
4933 9794 4.574828 CGAATGTTAGGTTCCACATTAGGG 59.425 45.833 7.29 0.00 42.46 3.53
5013 9877 4.582656 CCAATCTGCGGAAAATACCCATAA 59.417 41.667 0.00 0.00 0.00 1.90
5108 9972 4.627611 TCTGATACAACAGTACGGTAGC 57.372 45.455 0.00 0.00 38.79 3.58
5117 9981 3.064958 CAGCCAGCAATCTGATACAACAG 59.935 47.826 0.00 0.00 42.95 3.16
5182 10049 3.725895 GCTCACGTGTGCACATTATTGAG 60.726 47.826 31.47 28.20 34.92 3.02
5260 10149 6.674861 TGGTCCCAGGAGACAACTATTTAATA 59.325 38.462 9.54 0.00 38.59 0.98
5269 10158 3.933861 ATATTGGTCCCAGGAGACAAC 57.066 47.619 9.54 0.00 38.59 3.32
5453 10342 4.556233 TCACAAACTACTCTCCATTGACG 58.444 43.478 0.00 0.00 0.00 4.35
5482 10389 7.147620 TGTGACGGGGTATTAGTATCTCAAAAT 60.148 37.037 0.00 0.00 0.00 1.82
5483 10390 6.154877 TGTGACGGGGTATTAGTATCTCAAAA 59.845 38.462 0.00 0.00 0.00 2.44
5484 10391 5.657745 TGTGACGGGGTATTAGTATCTCAAA 59.342 40.000 0.00 0.00 0.00 2.69
5485 10392 5.202765 TGTGACGGGGTATTAGTATCTCAA 58.797 41.667 0.00 0.00 0.00 3.02
5486 10393 4.795469 TGTGACGGGGTATTAGTATCTCA 58.205 43.478 0.00 0.00 0.00 3.27
5487 10394 5.779529 TTGTGACGGGGTATTAGTATCTC 57.220 43.478 0.00 0.00 0.00 2.75
5488 10395 6.522054 CATTTGTGACGGGGTATTAGTATCT 58.478 40.000 0.00 0.00 0.00 1.98
5489 10396 5.178809 GCATTTGTGACGGGGTATTAGTATC 59.821 44.000 0.00 0.00 0.00 2.24
5490 10397 5.061179 GCATTTGTGACGGGGTATTAGTAT 58.939 41.667 0.00 0.00 0.00 2.12
5491 10398 4.081031 TGCATTTGTGACGGGGTATTAGTA 60.081 41.667 0.00 0.00 0.00 1.82
5492 10399 3.275999 GCATTTGTGACGGGGTATTAGT 58.724 45.455 0.00 0.00 0.00 2.24
5493 10400 3.275143 TGCATTTGTGACGGGGTATTAG 58.725 45.455 0.00 0.00 0.00 1.73
5494 10401 3.351794 TGCATTTGTGACGGGGTATTA 57.648 42.857 0.00 0.00 0.00 0.98
5495 10402 2.208132 TGCATTTGTGACGGGGTATT 57.792 45.000 0.00 0.00 0.00 1.89
5496 10403 1.816224 GTTGCATTTGTGACGGGGTAT 59.184 47.619 0.00 0.00 0.00 2.73
5497 10404 1.240256 GTTGCATTTGTGACGGGGTA 58.760 50.000 0.00 0.00 0.00 3.69
5498 10405 1.460273 GGTTGCATTTGTGACGGGGT 61.460 55.000 0.00 0.00 0.00 4.95
5499 10406 1.288752 GGTTGCATTTGTGACGGGG 59.711 57.895 0.00 0.00 0.00 5.73
5563 10470 6.814146 GCTACCTAAGCCTATATCATCAACAC 59.186 42.308 0.00 0.00 46.25 3.32
5609 10516 1.206610 CCACCACTGTCTGGATCTCAG 59.793 57.143 5.18 5.18 43.95 3.35
5620 10527 2.708861 TCACCTAAATCACCACCACTGT 59.291 45.455 0.00 0.00 0.00 3.55
5632 10539 2.158900 CCTCCAGCATCGTCACCTAAAT 60.159 50.000 0.00 0.00 0.00 1.40
5633 10540 1.207089 CCTCCAGCATCGTCACCTAAA 59.793 52.381 0.00 0.00 0.00 1.85
5634 10541 0.824109 CCTCCAGCATCGTCACCTAA 59.176 55.000 0.00 0.00 0.00 2.69
5635 10542 1.043116 CCCTCCAGCATCGTCACCTA 61.043 60.000 0.00 0.00 0.00 3.08
5636 10543 2.362369 CCCTCCAGCATCGTCACCT 61.362 63.158 0.00 0.00 0.00 4.00
5637 10544 2.187946 CCCTCCAGCATCGTCACC 59.812 66.667 0.00 0.00 0.00 4.02
5638 10545 2.187946 CCCCTCCAGCATCGTCAC 59.812 66.667 0.00 0.00 0.00 3.67
5639 10546 3.083349 CCCCCTCCAGCATCGTCA 61.083 66.667 0.00 0.00 0.00 4.35
5640 10547 2.317149 CTTCCCCCTCCAGCATCGTC 62.317 65.000 0.00 0.00 0.00 4.20
5641 10548 2.285368 TTCCCCCTCCAGCATCGT 60.285 61.111 0.00 0.00 0.00 3.73
5642 10549 2.507944 CTTCCCCCTCCAGCATCG 59.492 66.667 0.00 0.00 0.00 3.84
5643 10550 2.003548 ACCTTCCCCCTCCAGCATC 61.004 63.158 0.00 0.00 0.00 3.91
5644 10551 2.128226 ACCTTCCCCCTCCAGCAT 59.872 61.111 0.00 0.00 0.00 3.79
5681 10588 0.539051 AGCCAGGAAAGATGGAGACG 59.461 55.000 0.00 0.00 40.51 4.18
5746 10654 4.425180 TGAAACTACAGGCCACAACTAA 57.575 40.909 5.01 0.00 0.00 2.24
6017 10926 8.258708 AGTGATCTACATATCCACATCATGATG 58.741 37.037 29.95 29.95 44.15 3.07
6194 11103 2.563179 AGAAACAGTGTAGGTCGCTCAT 59.437 45.455 0.00 0.00 34.33 2.90
6237 11146 4.717877 TCCAAATGAGAGCTGAGACAAAA 58.282 39.130 0.00 0.00 0.00 2.44
6239 11148 4.224594 AGATCCAAATGAGAGCTGAGACAA 59.775 41.667 0.00 0.00 0.00 3.18
6246 11155 4.018597 AGTTTCCAGATCCAAATGAGAGCT 60.019 41.667 0.00 0.00 0.00 4.09
6300 11210 3.275832 TTCATCGACTCACGCGGCA 62.276 57.895 12.47 0.00 42.26 5.69
6330 11240 4.084589 GCGAAATGATTTCCCACACAAAAC 60.085 41.667 11.94 0.00 36.30 2.43
6334 11244 2.513753 AGCGAAATGATTTCCCACACA 58.486 42.857 11.94 0.00 36.30 3.72
6383 11293 3.152341 GTGAGGCCAAATATAGCAGCAT 58.848 45.455 5.01 0.00 0.00 3.79
6443 11357 7.308435 CACTCCATTATTCAGAAACCAAACTC 58.692 38.462 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.