Multiple sequence alignment - TraesCS5B01G143000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G143000 chr5B 100.000 2728 0 0 1878 4605 269981259 269978532 0.000000e+00 5038.0
1 TraesCS5B01G143000 chr5B 100.000 1470 0 0 1 1470 269983136 269981667 0.000000e+00 2715.0
2 TraesCS5B01G143000 chr5B 90.833 120 10 1 3623 3741 366049435 366049554 4.770000e-35 159.0
3 TraesCS5B01G143000 chr5D 93.348 1879 95 6 2752 4605 234844586 234846459 0.000000e+00 2750.0
4 TraesCS5B01G143000 chr5D 91.603 1048 49 13 373 1396 234841701 234842733 0.000000e+00 1411.0
5 TraesCS5B01G143000 chr5D 90.476 903 34 16 1878 2757 234843630 234844503 0.000000e+00 1144.0
6 TraesCS5B01G143000 chr5A 92.579 1846 110 10 2783 4605 319233266 319231425 0.000000e+00 2625.0
7 TraesCS5B01G143000 chr5A 90.297 876 39 18 626 1470 319235900 319235040 0.000000e+00 1105.0
8 TraesCS5B01G143000 chr5A 91.503 765 28 11 2021 2757 319234127 319233372 0.000000e+00 1018.0
9 TraesCS5B01G143000 chr5A 94.495 109 6 0 1884 1992 319234234 319234126 7.920000e-38 169.0
10 TraesCS5B01G143000 chr5A 92.593 54 4 0 480 533 426551291 426551344 1.370000e-10 78.7
11 TraesCS5B01G143000 chr6B 92.793 333 24 0 1 333 512243472 512243804 2.490000e-132 483.0
12 TraesCS5B01G143000 chr3B 92.492 333 25 0 1 333 10208703 10208371 1.160000e-130 477.0
13 TraesCS5B01G143000 chr3B 85.811 148 17 3 3630 3773 815372919 815372772 2.220000e-33 154.0
14 TraesCS5B01G143000 chr1B 92.216 334 24 2 1 333 89512213 89512545 5.390000e-129 472.0
15 TraesCS5B01G143000 chrUn 91.617 334 26 2 1 333 355370597 355370929 1.170000e-125 460.0
16 TraesCS5B01G143000 chr2D 86.982 338 38 4 1 333 478833763 478834099 4.350000e-100 375.0
17 TraesCS5B01G143000 chr2A 88.816 304 30 4 36 338 755746939 755747239 2.020000e-98 370.0
18 TraesCS5B01G143000 chr2A 90.909 55 5 0 479 533 313211093 313211147 1.780000e-09 75.0
19 TraesCS5B01G143000 chr2A 81.176 85 9 4 483 566 4110010 4109932 1.380000e-05 62.1
20 TraesCS5B01G143000 chr7A 88.525 305 34 1 29 333 704905053 704904750 7.280000e-98 368.0
21 TraesCS5B01G143000 chr7A 86.014 143 14 3 3630 3766 52313663 52313521 1.030000e-31 148.0
22 TraesCS5B01G143000 chr7A 87.500 56 7 0 478 533 692043319 692043264 1.070000e-06 65.8
23 TraesCS5B01G143000 chr6A 87.960 299 33 3 36 333 68143154 68143450 2.640000e-92 350.0
24 TraesCS5B01G143000 chr7B 85.714 329 42 5 8 333 74325670 74325344 4.410000e-90 342.0
25 TraesCS5B01G143000 chr6D 88.571 140 15 1 3624 3762 305362079 305362218 7.920000e-38 169.0
26 TraesCS5B01G143000 chr3D 92.105 114 8 1 3630 3742 400274793 400274680 4.770000e-35 159.0
27 TraesCS5B01G143000 chr3D 87.692 130 16 0 3633 3762 134949072 134949201 7.980000e-33 152.0
28 TraesCS5B01G143000 chr3D 95.238 42 2 0 478 519 533376102 533376143 2.970000e-07 67.6
29 TraesCS5B01G143000 chr3D 97.222 36 1 0 478 513 533410961 533410996 1.380000e-05 62.1
30 TraesCS5B01G143000 chr1A 89.147 129 13 1 3617 3745 354626805 354626678 4.770000e-35 159.0
31 TraesCS5B01G143000 chr1A 97.674 43 1 0 482 524 238212933 238212975 1.780000e-09 75.0
32 TraesCS5B01G143000 chr1D 97.619 42 1 0 481 522 363057896 363057855 6.390000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G143000 chr5B 269978532 269983136 4604 True 3876.500000 5038 100.0000 1 4605 2 chr5B.!!$R1 4604
1 TraesCS5B01G143000 chr5D 234841701 234846459 4758 False 1768.333333 2750 91.8090 373 4605 3 chr5D.!!$F1 4232
2 TraesCS5B01G143000 chr5A 319231425 319235900 4475 True 1229.250000 2625 92.2185 626 4605 4 chr5A.!!$R1 3979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.031585 TTGGGTGTTGAGTCGTCTCG 59.968 55.0 5.22 0.00 43.09 4.04 F
262 263 0.098200 TGCTAGATCGGACGTTCGTG 59.902 55.0 17.28 4.09 0.00 4.35 F
381 382 0.108329 ACCCAATCGGAGTAACTGCG 60.108 55.0 0.00 0.00 46.23 5.18 F
578 579 0.183492 ATGGCCACCATAAGCGATGT 59.817 50.0 8.16 0.00 43.19 3.06 F
619 622 0.476771 ACCTTCCCGGCAAAAGAAGA 59.523 50.0 16.30 0.00 39.50 2.87 F
689 692 0.588252 ACATCACTTCACACGCAAGC 59.412 50.0 0.00 0.00 45.62 4.01 F
2235 2758 0.605319 TGGTAAGGTCAAGCTTGGCG 60.605 55.0 25.73 0.78 32.44 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1382 1422 0.036010 GCTAGCAGCAGGGTTCTTGA 60.036 55.000 10.63 0.0 41.89 3.02 R
1386 1426 0.179070 GGTAGCTAGCAGCAGGGTTC 60.179 60.000 18.83 0.0 45.56 3.62 R
2314 2840 0.952280 TGTGTCAGACGTGAGAGTCC 59.048 55.000 0.00 0.0 41.83 3.85 R
2515 3042 1.152830 GGGCTGGAAAGGAACACCA 59.847 57.895 0.00 0.0 0.00 4.17 R
2647 3182 6.092259 GTCGATGCTTAGATGTTTTAAGTGGT 59.908 38.462 0.00 0.0 32.09 4.16 R
2805 3436 3.306989 CCAGGACTTCTGTGCATCTTGTA 60.307 47.826 0.00 0.0 41.83 2.41 R
4204 4860 0.610232 GGAGGCCAGAAGCACAACAT 60.610 55.000 5.01 0.0 46.50 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.106738 GAAGGGCTGCATGCATAGT 57.893 52.632 22.97 4.98 45.15 2.12
19 20 1.396653 GAAGGGCTGCATGCATAGTT 58.603 50.000 22.97 12.33 45.15 2.24
20 21 1.336125 GAAGGGCTGCATGCATAGTTC 59.664 52.381 22.97 16.89 45.15 3.01
21 22 0.466922 AGGGCTGCATGCATAGTTCC 60.467 55.000 22.97 17.01 45.15 3.62
22 23 0.752743 GGGCTGCATGCATAGTTCCA 60.753 55.000 22.97 0.00 45.15 3.53
23 24 1.325355 GGCTGCATGCATAGTTCCAT 58.675 50.000 22.97 0.00 45.15 3.41
24 25 1.684983 GGCTGCATGCATAGTTCCATT 59.315 47.619 22.97 0.00 45.15 3.16
25 26 2.886523 GGCTGCATGCATAGTTCCATTA 59.113 45.455 22.97 0.00 45.15 1.90
26 27 3.318839 GGCTGCATGCATAGTTCCATTAA 59.681 43.478 22.97 0.00 45.15 1.40
27 28 4.021719 GGCTGCATGCATAGTTCCATTAAT 60.022 41.667 22.97 0.00 45.15 1.40
28 29 4.921515 GCTGCATGCATAGTTCCATTAATG 59.078 41.667 22.97 8.58 42.31 1.90
29 30 5.508489 GCTGCATGCATAGTTCCATTAATGT 60.508 40.000 22.97 0.00 42.31 2.71
30 31 6.075762 TGCATGCATAGTTCCATTAATGTC 57.924 37.500 18.46 4.87 0.00 3.06
31 32 5.829391 TGCATGCATAGTTCCATTAATGTCT 59.171 36.000 18.46 11.20 0.00 3.41
32 33 6.016860 TGCATGCATAGTTCCATTAATGTCTC 60.017 38.462 18.46 4.22 0.00 3.36
33 34 6.016860 GCATGCATAGTTCCATTAATGTCTCA 60.017 38.462 14.21 5.25 0.00 3.27
34 35 7.469043 GCATGCATAGTTCCATTAATGTCTCAA 60.469 37.037 14.21 0.00 0.00 3.02
35 36 7.558161 TGCATAGTTCCATTAATGTCTCAAG 57.442 36.000 14.25 0.00 0.00 3.02
36 37 6.038603 TGCATAGTTCCATTAATGTCTCAAGC 59.961 38.462 14.25 9.93 0.00 4.01
37 38 6.261826 GCATAGTTCCATTAATGTCTCAAGCT 59.738 38.462 14.25 5.29 0.00 3.74
38 39 7.201767 GCATAGTTCCATTAATGTCTCAAGCTT 60.202 37.037 14.25 0.00 0.00 3.74
39 40 8.680903 CATAGTTCCATTAATGTCTCAAGCTTT 58.319 33.333 14.25 0.00 0.00 3.51
40 41 9.905713 ATAGTTCCATTAATGTCTCAAGCTTTA 57.094 29.630 14.25 0.00 0.00 1.85
41 42 8.635765 AGTTCCATTAATGTCTCAAGCTTTAA 57.364 30.769 14.25 0.00 0.00 1.52
42 43 9.247861 AGTTCCATTAATGTCTCAAGCTTTAAT 57.752 29.630 14.25 0.00 31.00 1.40
43 44 9.860898 GTTCCATTAATGTCTCAAGCTTTAATT 57.139 29.630 14.25 0.00 29.50 1.40
44 45 9.859427 TTCCATTAATGTCTCAAGCTTTAATTG 57.141 29.630 14.25 0.00 29.50 2.32
45 46 9.241919 TCCATTAATGTCTCAAGCTTTAATTGA 57.758 29.630 14.25 0.00 35.45 2.57
50 51 8.992835 AATGTCTCAAGCTTTAATTGATTTCC 57.007 30.769 0.00 0.00 36.16 3.13
51 52 7.765695 TGTCTCAAGCTTTAATTGATTTCCT 57.234 32.000 0.00 0.00 36.16 3.36
52 53 8.181904 TGTCTCAAGCTTTAATTGATTTCCTT 57.818 30.769 0.00 0.00 36.16 3.36
53 54 8.084073 TGTCTCAAGCTTTAATTGATTTCCTTG 58.916 33.333 0.00 0.00 36.16 3.61
54 55 7.062722 GTCTCAAGCTTTAATTGATTTCCTTGC 59.937 37.037 0.00 0.00 36.16 4.01
55 56 6.757237 TCAAGCTTTAATTGATTTCCTTGCA 58.243 32.000 0.00 0.00 31.86 4.08
56 57 7.388437 TCAAGCTTTAATTGATTTCCTTGCAT 58.612 30.769 0.00 0.00 31.86 3.96
57 58 7.332430 TCAAGCTTTAATTGATTTCCTTGCATG 59.668 33.333 0.00 0.00 31.86 4.06
58 59 5.583457 AGCTTTAATTGATTTCCTTGCATGC 59.417 36.000 11.82 11.82 0.00 4.06
59 60 5.352016 GCTTTAATTGATTTCCTTGCATGCA 59.648 36.000 18.46 18.46 0.00 3.96
60 61 6.456449 GCTTTAATTGATTTCCTTGCATGCAG 60.456 38.462 21.50 14.51 0.00 4.41
61 62 3.536956 ATTGATTTCCTTGCATGCAGG 57.463 42.857 22.09 22.09 0.00 4.85
62 63 1.187974 TGATTTCCTTGCATGCAGGG 58.812 50.000 36.34 36.34 43.57 4.45
63 64 1.188863 GATTTCCTTGCATGCAGGGT 58.811 50.000 38.56 25.48 42.86 4.34
64 65 1.135721 GATTTCCTTGCATGCAGGGTC 59.864 52.381 38.56 28.31 42.86 4.46
65 66 0.178967 TTTCCTTGCATGCAGGGTCA 60.179 50.000 38.56 27.21 42.86 4.02
66 67 0.040058 TTCCTTGCATGCAGGGTCAT 59.960 50.000 38.56 0.00 42.86 3.06
67 68 0.040058 TCCTTGCATGCAGGGTCATT 59.960 50.000 38.56 0.00 42.86 2.57
68 69 1.284491 TCCTTGCATGCAGGGTCATTA 59.716 47.619 38.56 22.61 42.86 1.90
69 70 1.679680 CCTTGCATGCAGGGTCATTAG 59.320 52.381 34.40 20.12 38.25 1.73
70 71 2.372264 CTTGCATGCAGGGTCATTAGT 58.628 47.619 21.39 0.00 0.00 2.24
71 72 2.512692 TGCATGCAGGGTCATTAGTT 57.487 45.000 18.46 0.00 0.00 2.24
72 73 3.643199 TGCATGCAGGGTCATTAGTTA 57.357 42.857 18.46 0.00 0.00 2.24
73 74 3.961849 TGCATGCAGGGTCATTAGTTAA 58.038 40.909 18.46 0.00 0.00 2.01
74 75 4.535781 TGCATGCAGGGTCATTAGTTAAT 58.464 39.130 18.46 0.00 0.00 1.40
75 76 4.955450 TGCATGCAGGGTCATTAGTTAATT 59.045 37.500 18.46 0.00 0.00 1.40
76 77 6.125719 TGCATGCAGGGTCATTAGTTAATTA 58.874 36.000 18.46 0.00 0.00 1.40
77 78 6.039270 TGCATGCAGGGTCATTAGTTAATTAC 59.961 38.462 18.46 0.00 0.00 1.89
78 79 6.515035 GCATGCAGGGTCATTAGTTAATTACC 60.515 42.308 14.21 6.67 38.58 2.85
79 80 6.068461 TGCAGGGTCATTAGTTAATTACCA 57.932 37.500 14.13 0.00 40.20 3.25
80 81 6.668645 TGCAGGGTCATTAGTTAATTACCAT 58.331 36.000 14.13 6.96 40.20 3.55
81 82 6.770785 TGCAGGGTCATTAGTTAATTACCATC 59.229 38.462 14.13 5.97 40.20 3.51
82 83 6.770785 GCAGGGTCATTAGTTAATTACCATCA 59.229 38.462 14.13 0.00 40.20 3.07
83 84 7.284489 GCAGGGTCATTAGTTAATTACCATCAA 59.716 37.037 14.13 0.00 40.20 2.57
84 85 8.840321 CAGGGTCATTAGTTAATTACCATCAAG 58.160 37.037 14.13 0.00 40.20 3.02
85 86 7.998964 AGGGTCATTAGTTAATTACCATCAAGG 59.001 37.037 14.13 0.00 40.20 3.61
86 87 7.996644 GGGTCATTAGTTAATTACCATCAAGGA 59.003 37.037 14.13 0.00 40.20 3.36
87 88 9.403583 GGTCATTAGTTAATTACCATCAAGGAA 57.596 33.333 9.36 0.00 38.94 3.36
98 99 7.712204 TTACCATCAAGGAAATAAGGAAACC 57.288 36.000 0.00 0.00 41.22 3.27
99 100 4.705023 ACCATCAAGGAAATAAGGAAACCG 59.295 41.667 0.00 0.00 41.22 4.44
100 101 4.440112 CCATCAAGGAAATAAGGAAACCGC 60.440 45.833 0.00 0.00 41.22 5.68
101 102 4.028993 TCAAGGAAATAAGGAAACCGCT 57.971 40.909 0.00 0.00 0.00 5.52
102 103 4.007659 TCAAGGAAATAAGGAAACCGCTC 58.992 43.478 0.00 0.00 0.00 5.03
103 104 3.000684 AGGAAATAAGGAAACCGCTCC 57.999 47.619 0.00 0.00 35.51 4.70
104 105 2.307686 AGGAAATAAGGAAACCGCTCCA 59.692 45.455 0.00 0.00 38.02 3.86
105 106 3.053619 AGGAAATAAGGAAACCGCTCCAT 60.054 43.478 0.00 0.00 38.02 3.41
106 107 4.165372 AGGAAATAAGGAAACCGCTCCATA 59.835 41.667 0.00 0.00 38.02 2.74
107 108 5.070685 GGAAATAAGGAAACCGCTCCATAT 58.929 41.667 0.00 0.00 38.02 1.78
108 109 5.535030 GGAAATAAGGAAACCGCTCCATATT 59.465 40.000 0.00 0.00 39.77 1.28
109 110 6.040504 GGAAATAAGGAAACCGCTCCATATTT 59.959 38.462 10.86 10.86 45.41 1.40
110 111 6.391227 AATAAGGAAACCGCTCCATATTTG 57.609 37.500 0.00 0.00 36.44 2.32
111 112 2.024414 AGGAAACCGCTCCATATTTGC 58.976 47.619 0.00 0.00 38.02 3.68
112 113 2.024414 GGAAACCGCTCCATATTTGCT 58.976 47.619 0.00 0.00 35.36 3.91
113 114 2.033424 GGAAACCGCTCCATATTTGCTC 59.967 50.000 0.00 0.00 35.36 4.26
114 115 1.680338 AACCGCTCCATATTTGCTCC 58.320 50.000 0.00 0.00 0.00 4.70
115 116 0.839946 ACCGCTCCATATTTGCTCCT 59.160 50.000 0.00 0.00 0.00 3.69
116 117 1.233019 CCGCTCCATATTTGCTCCTG 58.767 55.000 0.00 0.00 0.00 3.86
117 118 1.202687 CCGCTCCATATTTGCTCCTGA 60.203 52.381 0.00 0.00 0.00 3.86
118 119 2.141517 CGCTCCATATTTGCTCCTGAG 58.858 52.381 0.00 0.00 0.00 3.35
119 120 2.224137 CGCTCCATATTTGCTCCTGAGA 60.224 50.000 0.00 0.00 0.00 3.27
120 121 3.556633 CGCTCCATATTTGCTCCTGAGAT 60.557 47.826 0.00 0.00 0.00 2.75
121 122 3.752222 GCTCCATATTTGCTCCTGAGATG 59.248 47.826 0.00 0.00 0.00 2.90
122 123 4.746089 GCTCCATATTTGCTCCTGAGATGT 60.746 45.833 0.00 0.00 0.00 3.06
123 124 5.512060 GCTCCATATTTGCTCCTGAGATGTA 60.512 44.000 0.00 0.00 0.00 2.29
124 125 6.106648 TCCATATTTGCTCCTGAGATGTAG 57.893 41.667 0.00 0.00 0.00 2.74
125 126 4.694509 CCATATTTGCTCCTGAGATGTAGC 59.305 45.833 0.00 0.00 35.51 3.58
126 127 2.299993 TTTGCTCCTGAGATGTAGCG 57.700 50.000 0.00 0.00 37.80 4.26
127 128 1.474330 TTGCTCCTGAGATGTAGCGA 58.526 50.000 0.00 0.00 37.80 4.93
128 129 1.697284 TGCTCCTGAGATGTAGCGAT 58.303 50.000 0.00 0.00 37.80 4.58
129 130 1.611006 TGCTCCTGAGATGTAGCGATC 59.389 52.381 0.00 0.00 37.80 3.69
130 131 1.400888 GCTCCTGAGATGTAGCGATCG 60.401 57.143 11.69 11.69 0.00 3.69
131 132 1.876799 CTCCTGAGATGTAGCGATCGT 59.123 52.381 17.81 6.21 0.00 3.73
132 133 2.292016 CTCCTGAGATGTAGCGATCGTT 59.708 50.000 17.81 13.94 0.00 3.85
133 134 2.033424 TCCTGAGATGTAGCGATCGTTG 59.967 50.000 17.81 0.00 0.00 4.10
134 135 2.389059 CTGAGATGTAGCGATCGTTGG 58.611 52.381 17.81 0.00 0.00 3.77
135 136 1.067060 TGAGATGTAGCGATCGTTGGG 59.933 52.381 17.81 0.00 0.00 4.12
136 137 1.067212 GAGATGTAGCGATCGTTGGGT 59.933 52.381 17.81 0.67 0.00 4.51
137 138 1.202417 AGATGTAGCGATCGTTGGGTG 60.202 52.381 17.81 0.00 0.00 4.61
138 139 0.535335 ATGTAGCGATCGTTGGGTGT 59.465 50.000 17.81 0.00 0.00 4.16
139 140 0.319083 TGTAGCGATCGTTGGGTGTT 59.681 50.000 17.81 0.00 0.00 3.32
140 141 0.719465 GTAGCGATCGTTGGGTGTTG 59.281 55.000 17.81 0.00 0.00 3.33
141 142 0.604073 TAGCGATCGTTGGGTGTTGA 59.396 50.000 17.81 0.00 0.00 3.18
142 143 0.670546 AGCGATCGTTGGGTGTTGAG 60.671 55.000 17.81 0.00 0.00 3.02
143 144 0.949105 GCGATCGTTGGGTGTTGAGT 60.949 55.000 17.81 0.00 0.00 3.41
144 145 1.068474 CGATCGTTGGGTGTTGAGTC 58.932 55.000 7.03 0.00 0.00 3.36
145 146 1.068474 GATCGTTGGGTGTTGAGTCG 58.932 55.000 0.00 0.00 0.00 4.18
146 147 0.391597 ATCGTTGGGTGTTGAGTCGT 59.608 50.000 0.00 0.00 0.00 4.34
147 148 0.249155 TCGTTGGGTGTTGAGTCGTC 60.249 55.000 0.00 0.00 0.00 4.20
148 149 0.249322 CGTTGGGTGTTGAGTCGTCT 60.249 55.000 0.00 0.00 0.00 4.18
149 150 1.499049 GTTGGGTGTTGAGTCGTCTC 58.501 55.000 2.47 2.47 40.79 3.36
150 151 0.031585 TTGGGTGTTGAGTCGTCTCG 59.968 55.000 5.22 0.00 43.09 4.04
151 152 1.733399 GGGTGTTGAGTCGTCTCGC 60.733 63.158 5.22 1.81 43.09 5.03
152 153 1.007734 GGTGTTGAGTCGTCTCGCA 60.008 57.895 5.22 4.27 43.09 5.10
153 154 0.388649 GGTGTTGAGTCGTCTCGCAT 60.389 55.000 5.22 0.00 43.09 4.73
154 155 0.710567 GTGTTGAGTCGTCTCGCATG 59.289 55.000 5.22 0.00 43.09 4.06
155 156 0.596082 TGTTGAGTCGTCTCGCATGA 59.404 50.000 0.00 0.00 43.09 3.07
156 157 0.985549 GTTGAGTCGTCTCGCATGAC 59.014 55.000 0.00 0.00 43.09 3.06
189 190 2.256391 CTGCCGGCAGAACATTTCA 58.744 52.632 46.72 13.46 46.30 2.69
190 191 0.813184 CTGCCGGCAGAACATTTCAT 59.187 50.000 46.72 0.00 46.30 2.57
191 192 0.810648 TGCCGGCAGAACATTTCATC 59.189 50.000 29.03 0.00 0.00 2.92
192 193 1.098050 GCCGGCAGAACATTTCATCT 58.902 50.000 24.80 0.00 0.00 2.90
193 194 1.064654 GCCGGCAGAACATTTCATCTC 59.935 52.381 24.80 0.00 0.00 2.75
194 195 2.358957 CCGGCAGAACATTTCATCTCA 58.641 47.619 0.00 0.00 0.00 3.27
195 196 2.749076 CCGGCAGAACATTTCATCTCAA 59.251 45.455 0.00 0.00 0.00 3.02
196 197 3.426695 CCGGCAGAACATTTCATCTCAAC 60.427 47.826 0.00 0.00 0.00 3.18
197 198 3.426695 CGGCAGAACATTTCATCTCAACC 60.427 47.826 0.00 0.00 0.00 3.77
198 199 3.426695 GGCAGAACATTTCATCTCAACCG 60.427 47.826 0.00 0.00 0.00 4.44
199 200 3.189287 GCAGAACATTTCATCTCAACCGT 59.811 43.478 0.00 0.00 0.00 4.83
200 201 4.320494 GCAGAACATTTCATCTCAACCGTT 60.320 41.667 0.00 0.00 0.00 4.44
201 202 5.149273 CAGAACATTTCATCTCAACCGTTG 58.851 41.667 4.78 4.78 0.00 4.10
202 203 5.049474 CAGAACATTTCATCTCAACCGTTGA 60.049 40.000 13.29 13.29 38.17 3.18
203 204 5.530915 AGAACATTTCATCTCAACCGTTGAA 59.469 36.000 14.74 6.94 39.58 2.69
204 205 5.108385 ACATTTCATCTCAACCGTTGAAC 57.892 39.130 14.74 0.00 39.58 3.18
205 206 4.821805 ACATTTCATCTCAACCGTTGAACT 59.178 37.500 14.74 2.86 39.58 3.01
206 207 5.049405 ACATTTCATCTCAACCGTTGAACTC 60.049 40.000 14.74 0.00 39.58 3.01
207 208 3.744238 TCATCTCAACCGTTGAACTCA 57.256 42.857 14.74 0.74 39.58 3.41
208 209 3.390135 TCATCTCAACCGTTGAACTCAC 58.610 45.455 14.74 0.00 39.58 3.51
209 210 2.971660 TCTCAACCGTTGAACTCACA 57.028 45.000 14.74 0.00 39.58 3.58
210 211 2.821546 TCTCAACCGTTGAACTCACAG 58.178 47.619 14.74 2.28 39.58 3.66
211 212 2.429250 TCTCAACCGTTGAACTCACAGA 59.571 45.455 14.74 4.52 39.58 3.41
212 213 3.069586 TCTCAACCGTTGAACTCACAGAT 59.930 43.478 14.74 0.00 39.58 2.90
213 214 3.804036 TCAACCGTTGAACTCACAGATT 58.196 40.909 11.63 0.00 36.59 2.40
214 215 4.196193 TCAACCGTTGAACTCACAGATTT 58.804 39.130 11.63 0.00 36.59 2.17
215 216 5.361427 TCAACCGTTGAACTCACAGATTTA 58.639 37.500 11.63 0.00 36.59 1.40
216 217 5.818336 TCAACCGTTGAACTCACAGATTTAA 59.182 36.000 11.63 0.00 36.59 1.52
217 218 5.668558 ACCGTTGAACTCACAGATTTAAC 57.331 39.130 0.00 0.00 0.00 2.01
218 219 5.120399 ACCGTTGAACTCACAGATTTAACA 58.880 37.500 0.00 0.00 0.00 2.41
219 220 5.763204 ACCGTTGAACTCACAGATTTAACAT 59.237 36.000 0.00 0.00 0.00 2.71
220 221 6.079763 CCGTTGAACTCACAGATTTAACATG 58.920 40.000 0.00 0.00 0.00 3.21
221 222 6.079763 CGTTGAACTCACAGATTTAACATGG 58.920 40.000 0.00 0.00 0.00 3.66
222 223 6.381801 GTTGAACTCACAGATTTAACATGGG 58.618 40.000 0.00 0.00 0.00 4.00
223 224 4.458989 TGAACTCACAGATTTAACATGGGC 59.541 41.667 0.00 0.00 0.00 5.36
224 225 4.032960 ACTCACAGATTTAACATGGGCA 57.967 40.909 0.00 0.00 0.00 5.36
225 226 4.012374 ACTCACAGATTTAACATGGGCAG 58.988 43.478 0.00 0.00 0.00 4.85
226 227 4.012374 CTCACAGATTTAACATGGGCAGT 58.988 43.478 0.00 0.00 0.00 4.40
227 228 4.406456 TCACAGATTTAACATGGGCAGTT 58.594 39.130 0.00 0.00 0.00 3.16
228 229 4.218200 TCACAGATTTAACATGGGCAGTTG 59.782 41.667 0.00 0.00 0.00 3.16
229 230 3.511146 ACAGATTTAACATGGGCAGTTGG 59.489 43.478 0.00 0.00 0.00 3.77
230 231 3.763360 CAGATTTAACATGGGCAGTTGGA 59.237 43.478 0.00 0.00 0.00 3.53
231 232 4.403432 CAGATTTAACATGGGCAGTTGGAT 59.597 41.667 0.00 0.00 0.00 3.41
232 233 4.403432 AGATTTAACATGGGCAGTTGGATG 59.597 41.667 0.00 0.00 0.00 3.51
233 234 2.897271 TAACATGGGCAGTTGGATGT 57.103 45.000 0.00 0.00 0.00 3.06
234 235 1.259609 AACATGGGCAGTTGGATGTG 58.740 50.000 0.00 0.00 0.00 3.21
235 236 0.405198 ACATGGGCAGTTGGATGTGA 59.595 50.000 0.00 0.00 0.00 3.58
236 237 1.006281 ACATGGGCAGTTGGATGTGAT 59.994 47.619 0.00 0.00 0.00 3.06
237 238 2.104967 CATGGGCAGTTGGATGTGATT 58.895 47.619 0.00 0.00 0.00 2.57
238 239 2.307496 TGGGCAGTTGGATGTGATTT 57.693 45.000 0.00 0.00 0.00 2.17
239 240 3.448093 TGGGCAGTTGGATGTGATTTA 57.552 42.857 0.00 0.00 0.00 1.40
240 241 3.355378 TGGGCAGTTGGATGTGATTTAG 58.645 45.455 0.00 0.00 0.00 1.85
241 242 2.099756 GGGCAGTTGGATGTGATTTAGC 59.900 50.000 0.00 0.00 0.00 3.09
242 243 3.019564 GGCAGTTGGATGTGATTTAGCT 58.980 45.455 0.00 0.00 0.00 3.32
243 244 3.445096 GGCAGTTGGATGTGATTTAGCTT 59.555 43.478 0.00 0.00 0.00 3.74
244 245 4.418392 GCAGTTGGATGTGATTTAGCTTG 58.582 43.478 0.00 0.00 0.00 4.01
245 246 4.418392 CAGTTGGATGTGATTTAGCTTGC 58.582 43.478 0.00 0.00 0.00 4.01
246 247 4.157289 CAGTTGGATGTGATTTAGCTTGCT 59.843 41.667 0.00 0.00 0.00 3.91
247 248 5.355071 CAGTTGGATGTGATTTAGCTTGCTA 59.645 40.000 0.00 0.00 0.00 3.49
248 249 5.587844 AGTTGGATGTGATTTAGCTTGCTAG 59.412 40.000 0.00 0.00 0.00 3.42
249 250 5.357742 TGGATGTGATTTAGCTTGCTAGA 57.642 39.130 0.00 0.00 0.00 2.43
250 251 5.933617 TGGATGTGATTTAGCTTGCTAGAT 58.066 37.500 5.52 5.52 0.00 1.98
251 252 5.994054 TGGATGTGATTTAGCTTGCTAGATC 59.006 40.000 19.80 19.80 0.00 2.75
252 253 5.119898 GGATGTGATTTAGCTTGCTAGATCG 59.880 44.000 20.62 0.00 0.00 3.69
253 254 4.371786 TGTGATTTAGCTTGCTAGATCGG 58.628 43.478 20.62 0.00 0.00 4.18
254 255 4.099419 TGTGATTTAGCTTGCTAGATCGGA 59.901 41.667 20.62 11.56 0.00 4.55
255 256 4.446051 GTGATTTAGCTTGCTAGATCGGAC 59.554 45.833 20.62 13.98 0.00 4.79
256 257 2.776312 TTAGCTTGCTAGATCGGACG 57.224 50.000 0.00 0.00 0.00 4.79
257 258 1.676746 TAGCTTGCTAGATCGGACGT 58.323 50.000 0.00 0.00 0.00 4.34
258 259 0.818296 AGCTTGCTAGATCGGACGTT 59.182 50.000 0.00 0.00 0.00 3.99
259 260 1.201343 GCTTGCTAGATCGGACGTTC 58.799 55.000 0.00 0.00 0.00 3.95
260 261 1.467875 CTTGCTAGATCGGACGTTCG 58.532 55.000 10.83 10.83 0.00 3.95
261 262 0.806868 TTGCTAGATCGGACGTTCGT 59.193 50.000 17.28 3.33 0.00 3.85
262 263 0.098200 TGCTAGATCGGACGTTCGTG 59.902 55.000 17.28 4.09 0.00 4.35
263 264 0.591741 GCTAGATCGGACGTTCGTGG 60.592 60.000 17.28 0.00 0.00 4.94
264 265 0.731417 CTAGATCGGACGTTCGTGGT 59.269 55.000 17.28 3.57 0.00 4.16
265 266 1.131883 CTAGATCGGACGTTCGTGGTT 59.868 52.381 17.28 3.47 0.00 3.67
266 267 0.316204 AGATCGGACGTTCGTGGTTT 59.684 50.000 17.28 0.00 0.00 3.27
267 268 0.712222 GATCGGACGTTCGTGGTTTC 59.288 55.000 17.28 3.41 0.00 2.78
268 269 0.316204 ATCGGACGTTCGTGGTTTCT 59.684 50.000 17.28 0.00 0.00 2.52
269 270 0.318107 TCGGACGTTCGTGGTTTCTC 60.318 55.000 17.28 0.00 0.00 2.87
270 271 0.318445 CGGACGTTCGTGGTTTCTCT 60.318 55.000 8.45 0.00 0.00 3.10
271 272 1.137513 GGACGTTCGTGGTTTCTCTG 58.862 55.000 1.74 0.00 0.00 3.35
272 273 1.537562 GGACGTTCGTGGTTTCTCTGT 60.538 52.381 1.74 0.00 0.00 3.41
273 274 1.521423 GACGTTCGTGGTTTCTCTGTG 59.479 52.381 1.74 0.00 0.00 3.66
274 275 1.134907 ACGTTCGTGGTTTCTCTGTGT 60.135 47.619 0.00 0.00 0.00 3.72
275 276 1.257936 CGTTCGTGGTTTCTCTGTGTG 59.742 52.381 0.00 0.00 0.00 3.82
276 277 2.277084 GTTCGTGGTTTCTCTGTGTGT 58.723 47.619 0.00 0.00 0.00 3.72
277 278 3.450578 GTTCGTGGTTTCTCTGTGTGTA 58.549 45.455 0.00 0.00 0.00 2.90
278 279 3.088194 TCGTGGTTTCTCTGTGTGTAC 57.912 47.619 0.00 0.00 0.00 2.90
279 280 2.691526 TCGTGGTTTCTCTGTGTGTACT 59.308 45.455 0.00 0.00 0.00 2.73
280 281 3.131577 TCGTGGTTTCTCTGTGTGTACTT 59.868 43.478 0.00 0.00 0.00 2.24
281 282 3.489785 CGTGGTTTCTCTGTGTGTACTTC 59.510 47.826 0.00 0.00 0.00 3.01
282 283 4.439057 GTGGTTTCTCTGTGTGTACTTCA 58.561 43.478 0.00 0.00 0.00 3.02
283 284 4.508124 GTGGTTTCTCTGTGTGTACTTCAG 59.492 45.833 0.00 0.59 0.00 3.02
284 285 4.058817 GGTTTCTCTGTGTGTACTTCAGG 58.941 47.826 10.71 4.74 0.00 3.86
285 286 4.058817 GTTTCTCTGTGTGTACTTCAGGG 58.941 47.826 10.71 8.55 0.00 4.45
286 287 2.958818 TCTCTGTGTGTACTTCAGGGT 58.041 47.619 10.44 0.00 32.25 4.34
287 288 2.628178 TCTCTGTGTGTACTTCAGGGTG 59.372 50.000 10.44 4.72 32.25 4.61
288 289 2.365617 CTCTGTGTGTACTTCAGGGTGT 59.634 50.000 10.71 0.00 0.00 4.16
289 290 2.102420 TCTGTGTGTACTTCAGGGTGTG 59.898 50.000 10.71 0.00 0.00 3.82
290 291 1.834896 TGTGTGTACTTCAGGGTGTGT 59.165 47.619 0.00 0.00 0.00 3.72
291 292 2.159014 TGTGTGTACTTCAGGGTGTGTC 60.159 50.000 0.00 0.00 0.00 3.67
292 293 1.414919 TGTGTACTTCAGGGTGTGTCC 59.585 52.381 0.00 0.00 0.00 4.02
293 294 1.414919 GTGTACTTCAGGGTGTGTCCA 59.585 52.381 0.00 0.00 38.11 4.02
294 295 2.038557 GTGTACTTCAGGGTGTGTCCAT 59.961 50.000 0.00 0.00 38.11 3.41
295 296 3.259876 GTGTACTTCAGGGTGTGTCCATA 59.740 47.826 0.00 0.00 38.11 2.74
296 297 3.904965 TGTACTTCAGGGTGTGTCCATAA 59.095 43.478 0.00 0.00 38.11 1.90
297 298 4.348461 TGTACTTCAGGGTGTGTCCATAAA 59.652 41.667 0.00 0.00 38.11 1.40
298 299 4.447138 ACTTCAGGGTGTGTCCATAAAA 57.553 40.909 0.00 0.00 38.11 1.52
299 300 4.798882 ACTTCAGGGTGTGTCCATAAAAA 58.201 39.130 0.00 0.00 38.11 1.94
347 348 7.436118 AGTAGTAGAGACTAGTACTCCATTCG 58.564 42.308 16.02 0.00 39.60 3.34
348 349 6.237887 AGTAGAGACTAGTACTCCATTCGT 57.762 41.667 0.00 0.00 32.65 3.85
349 350 6.652053 AGTAGAGACTAGTACTCCATTCGTT 58.348 40.000 0.00 2.81 32.65 3.85
350 351 7.111466 AGTAGAGACTAGTACTCCATTCGTTT 58.889 38.462 0.00 2.30 32.65 3.60
351 352 6.837471 AGAGACTAGTACTCCATTCGTTTT 57.163 37.500 0.00 0.00 35.27 2.43
352 353 7.934855 AGAGACTAGTACTCCATTCGTTTTA 57.065 36.000 0.00 0.00 35.27 1.52
353 354 8.345724 AGAGACTAGTACTCCATTCGTTTTAA 57.654 34.615 0.00 0.00 35.27 1.52
354 355 8.800332 AGAGACTAGTACTCCATTCGTTTTAAA 58.200 33.333 0.00 0.00 35.27 1.52
355 356 9.415544 GAGACTAGTACTCCATTCGTTTTAAAA 57.584 33.333 0.00 0.00 0.00 1.52
356 357 9.939802 AGACTAGTACTCCATTCGTTTTAAAAT 57.060 29.630 0.00 0.00 0.00 1.82
364 365 8.674607 ACTCCATTCGTTTTAAAATAGATGACC 58.325 33.333 3.52 0.00 0.00 4.02
365 366 7.992008 TCCATTCGTTTTAAAATAGATGACCC 58.008 34.615 3.52 0.00 0.00 4.46
366 367 7.612244 TCCATTCGTTTTAAAATAGATGACCCA 59.388 33.333 3.52 0.00 0.00 4.51
367 368 8.247562 CCATTCGTTTTAAAATAGATGACCCAA 58.752 33.333 3.52 0.00 0.00 4.12
368 369 9.801873 CATTCGTTTTAAAATAGATGACCCAAT 57.198 29.630 3.52 0.00 0.00 3.16
370 371 7.690228 TCGTTTTAAAATAGATGACCCAATCG 58.310 34.615 3.52 0.00 0.00 3.34
371 372 6.910433 CGTTTTAAAATAGATGACCCAATCGG 59.090 38.462 3.52 0.00 37.81 4.18
377 378 3.821421 AGATGACCCAATCGGAGTAAC 57.179 47.619 0.00 0.00 34.64 2.50
381 382 0.108329 ACCCAATCGGAGTAACTGCG 60.108 55.000 0.00 0.00 46.23 5.18
508 509 9.787532 ATATTTGGTATGATATTAATTGCACGC 57.212 29.630 0.00 0.00 0.00 5.34
513 514 9.008965 TGGTATGATATTAATTGCACGCTAAAT 57.991 29.630 0.00 0.00 0.00 1.40
536 537 9.507280 AAATATGTTGAGCGTTCATCATTTTAG 57.493 29.630 24.68 0.00 41.60 1.85
539 540 5.106712 TGTTGAGCGTTCATCATTTTAGGTC 60.107 40.000 8.72 0.00 32.27 3.85
540 541 4.574892 TGAGCGTTCATCATTTTAGGTCA 58.425 39.130 0.00 0.00 33.17 4.02
566 567 1.255882 TGACATGGTTTGATGGCCAC 58.744 50.000 8.16 2.36 37.62 5.01
567 568 0.532115 GACATGGTTTGATGGCCACC 59.468 55.000 8.16 4.60 37.62 4.61
572 573 2.455557 TGGTTTGATGGCCACCATAAG 58.544 47.619 8.16 0.00 45.26 1.73
573 574 1.136891 GGTTTGATGGCCACCATAAGC 59.863 52.381 8.16 8.05 45.26 3.09
574 575 1.102154 TTTGATGGCCACCATAAGCG 58.898 50.000 8.16 0.00 45.26 4.68
575 576 0.254462 TTGATGGCCACCATAAGCGA 59.746 50.000 8.16 0.00 45.26 4.93
576 577 0.473755 TGATGGCCACCATAAGCGAT 59.526 50.000 8.16 0.00 45.26 4.58
577 578 0.877071 GATGGCCACCATAAGCGATG 59.123 55.000 8.16 0.00 45.26 3.84
578 579 0.183492 ATGGCCACCATAAGCGATGT 59.817 50.000 8.16 0.00 43.19 3.06
579 580 0.833949 TGGCCACCATAAGCGATGTA 59.166 50.000 0.00 0.00 33.19 2.29
580 581 1.202639 TGGCCACCATAAGCGATGTAG 60.203 52.381 0.00 0.00 33.19 2.74
581 582 1.070134 GGCCACCATAAGCGATGTAGA 59.930 52.381 0.00 0.00 33.19 2.59
608 611 4.543590 AGATATAGATGCAACCTTCCCG 57.456 45.455 0.00 0.00 0.00 5.14
619 622 0.476771 ACCTTCCCGGCAAAAGAAGA 59.523 50.000 16.30 0.00 39.50 2.87
620 623 1.133606 ACCTTCCCGGCAAAAGAAGAA 60.134 47.619 16.30 2.73 39.50 2.52
621 624 1.541588 CCTTCCCGGCAAAAGAAGAAG 59.458 52.381 16.30 11.19 39.50 2.85
677 680 0.723414 CGCGCTCAAATCACATCACT 59.277 50.000 5.56 0.00 0.00 3.41
689 692 0.588252 ACATCACTTCACACGCAAGC 59.412 50.000 0.00 0.00 45.62 4.01
848 856 1.068588 GCACTTTCCTTTCCCGCTTTT 59.931 47.619 0.00 0.00 0.00 2.27
868 876 3.744940 TTGCAGATGGATTCTTTCCCT 57.255 42.857 0.00 0.00 44.77 4.20
871 879 2.843701 CAGATGGATTCTTTCCCTCGG 58.156 52.381 0.00 0.00 44.77 4.63
958 976 1.677217 CCCACAAGTAGAAGCAGCTCC 60.677 57.143 0.00 0.00 0.00 4.70
971 989 1.068333 GCAGCTCCAGAGAGATCGATC 60.068 57.143 17.91 17.91 43.39 3.69
972 990 1.197492 CAGCTCCAGAGAGATCGATCG 59.803 57.143 19.33 9.36 43.39 3.69
973 991 1.202758 AGCTCCAGAGAGATCGATCGT 60.203 52.381 19.33 11.16 43.39 3.73
974 992 1.196808 GCTCCAGAGAGATCGATCGTC 59.803 57.143 19.33 18.68 43.39 4.20
975 993 1.804151 CTCCAGAGAGATCGATCGTCC 59.196 57.143 19.33 12.54 43.39 4.79
993 1011 2.182030 CGTCTTCCACTCCGCCTC 59.818 66.667 0.00 0.00 0.00 4.70
1371 1410 4.580580 AGAAGGTCGCATCTTGTTTCTTTT 59.419 37.500 0.00 0.00 0.00 2.27
1373 1412 4.860072 AGGTCGCATCTTGTTTCTTTTTC 58.140 39.130 0.00 0.00 0.00 2.29
1400 1440 2.479566 TTCAAGAACCCTGCTGCTAG 57.520 50.000 0.00 0.00 0.00 3.42
1406 1446 0.909610 AACCCTGCTGCTAGCTACCA 60.910 55.000 17.23 9.09 42.97 3.25
1418 1458 5.183228 TGCTAGCTACCACTGGTTTAAATC 58.817 41.667 17.23 0.00 37.09 2.17
1427 1467 5.073144 ACCACTGGTTTAAATCCTCTTCAGA 59.927 40.000 0.00 0.00 27.29 3.27
1444 1484 7.031226 TCTTCAGACTCCATTTTGACTTTTG 57.969 36.000 0.00 0.00 0.00 2.44
1467 1507 5.534654 TGAGGAAACGAAATGGACATTCTTT 59.465 36.000 0.00 0.00 0.00 2.52
1905 2415 7.073598 TCAGATTGGGAAATGTATGGATTAGGA 59.926 37.037 0.00 0.00 0.00 2.94
1965 2475 5.147162 GGACGAAGATTTTCACATGTTCAC 58.853 41.667 0.00 0.00 32.67 3.18
2042 2552 1.362237 TCCATTGATTGAAAGGCCCCT 59.638 47.619 0.00 0.00 0.00 4.79
2113 2623 5.590530 TCCCATTACAATTTTAGCGCATT 57.409 34.783 11.47 0.00 0.00 3.56
2157 2668 1.086067 GCTGTCTTAGCGCATCTGCA 61.086 55.000 11.47 1.63 43.63 4.41
2159 2670 1.938577 CTGTCTTAGCGCATCTGCATT 59.061 47.619 11.47 0.00 42.21 3.56
2165 2676 5.049818 GTCTTAGCGCATCTGCATTTTAGAT 60.050 40.000 11.47 0.00 42.21 1.98
2186 2697 5.884792 AGATGCTAAAGGTGAGAGAAATTGG 59.115 40.000 0.00 0.00 0.00 3.16
2235 2758 0.605319 TGGTAAGGTCAAGCTTGGCG 60.605 55.000 25.73 0.78 32.44 5.69
2342 2868 4.689071 TCACGTCTGACACATTACTTGTT 58.311 39.130 8.73 0.00 36.00 2.83
2364 2890 1.577736 CTGGAAGTCCTCCTCCACAT 58.422 55.000 0.00 0.00 45.64 3.21
2400 2926 6.160576 ACTAATGTTGGAACACTGCAAATT 57.839 33.333 0.00 0.00 42.51 1.82
2481 3007 7.447374 AGTTGGAATTTGTCGTAATTCATCA 57.553 32.000 16.31 8.05 43.24 3.07
2482 3008 7.881142 AGTTGGAATTTGTCGTAATTCATCAA 58.119 30.769 16.31 11.60 43.24 2.57
2483 3009 8.522830 AGTTGGAATTTGTCGTAATTCATCAAT 58.477 29.630 16.31 3.38 43.24 2.57
2484 3010 8.798153 GTTGGAATTTGTCGTAATTCATCAATC 58.202 33.333 16.31 5.00 43.24 2.67
2531 3058 1.338020 CAAGTGGTGTTCCTTTCCAGC 59.662 52.381 0.00 0.00 34.23 4.85
2647 3182 6.479972 AATCCTATTTAGATGACGTCCACA 57.520 37.500 14.12 0.00 0.00 4.17
2781 3412 5.237996 TCTGAACAATTTGCTGAGAGTTGAG 59.762 40.000 0.00 0.00 0.00 3.02
2853 3484 5.814764 CTGATCACAGAAATCAAGGGAAG 57.185 43.478 0.00 0.00 46.03 3.46
2863 3494 4.379302 AATCAAGGGAAGTCTCTGCTTT 57.621 40.909 0.00 0.00 0.00 3.51
2994 3626 2.343758 GTGAGAAGAGCGGTGCCA 59.656 61.111 0.00 0.00 0.00 4.92
3009 3641 2.363795 CCACTGGCCCTCGAGGTA 60.364 66.667 29.25 14.49 38.26 3.08
3030 3662 0.114560 AGGACGACCCAAGGAGAGAA 59.885 55.000 0.00 0.00 37.41 2.87
3210 3842 2.281484 GCCTTCTTCACCACCGCA 60.281 61.111 0.00 0.00 0.00 5.69
3246 3878 2.097791 CAGCTACACCTACTTCCTCGTC 59.902 54.545 0.00 0.00 0.00 4.20
3249 3881 1.254954 ACACCTACTTCCTCGTCACC 58.745 55.000 0.00 0.00 0.00 4.02
3252 3884 1.104630 CCTACTTCCTCGTCACCTCC 58.895 60.000 0.00 0.00 0.00 4.30
3320 3952 2.817396 GAGGAAGCTCTGCGCCAC 60.817 66.667 4.18 0.00 40.39 5.01
3384 4016 1.674057 CAAGTGCCCTCTCGAAGGT 59.326 57.895 11.21 0.00 44.56 3.50
3390 4022 1.342076 TGCCCTCTCGAAGGTCACTAT 60.342 52.381 11.21 0.00 44.56 2.12
3391 4023 1.338655 GCCCTCTCGAAGGTCACTATC 59.661 57.143 11.21 0.00 44.56 2.08
3392 4024 1.957877 CCCTCTCGAAGGTCACTATCC 59.042 57.143 11.21 0.00 44.56 2.59
3402 4034 2.248686 AGGTCACTATCCTCCTCATGGT 59.751 50.000 0.00 0.00 34.23 3.55
3425 4057 3.380004 CCCAAGCTTCACAACTTGTAACA 59.620 43.478 0.00 0.00 41.36 2.41
3428 4060 3.886123 AGCTTCACAACTTGTAACACCT 58.114 40.909 0.00 0.00 0.00 4.00
3430 4062 3.625764 GCTTCACAACTTGTAACACCTGA 59.374 43.478 0.00 0.00 0.00 3.86
3431 4063 4.095782 GCTTCACAACTTGTAACACCTGAA 59.904 41.667 0.00 0.00 0.00 3.02
3432 4064 5.730568 GCTTCACAACTTGTAACACCTGAAG 60.731 44.000 9.89 9.89 34.11 3.02
3459 4091 1.611851 CCCAGCTGGACTCTCTGGT 60.612 63.158 34.91 0.00 44.41 4.00
3535 4167 3.702045 AGTCACCAGTTACCTGCTAGATC 59.298 47.826 0.00 0.00 37.38 2.75
3574 4206 7.661536 ACTAAAGGCTAATCTCAGTGATGTA 57.338 36.000 0.00 0.00 35.21 2.29
3601 4233 5.536161 ACTGTCATTATGCCATTATGGTTCC 59.464 40.000 13.28 0.00 40.46 3.62
3626 4258 6.797033 CCTATGTTTTGAAGTTGAAAGCTACG 59.203 38.462 3.61 0.00 0.00 3.51
3842 4497 2.705658 TCTGAGGAACAACCATGTGACT 59.294 45.455 0.00 0.00 40.46 3.41
3873 4528 7.610580 ATTTCCTTTACAAAACAGAATGGGA 57.389 32.000 0.00 0.00 43.62 4.37
3875 4530 6.399639 TCCTTTACAAAACAGAATGGGAAC 57.600 37.500 0.00 0.00 43.62 3.62
4077 4733 0.459237 CCCTCAGTGTAGCTCTTGCG 60.459 60.000 0.00 0.00 45.42 4.85
4100 4756 4.567971 CAATGGGCAAAAAGAATAGCACA 58.432 39.130 0.00 0.00 45.45 4.57
4129 4785 8.081633 AGAATTTGTACGAAAAATGATCAGCAA 58.918 29.630 0.09 0.00 0.00 3.91
4227 4883 1.289160 TGTGCTTCTGGCCTCCTAAT 58.711 50.000 3.32 0.00 40.92 1.73
4376 5032 3.130340 TCCCTTTGTTGAAGCAAGTTCAC 59.870 43.478 0.00 0.00 45.23 3.18
4395 5051 1.067516 ACGCTGTTTGCTGCTTCAAAT 59.932 42.857 0.00 0.00 38.12 2.32
4413 5069 5.076182 TCAAATTCCCACAAATGCAGACTA 58.924 37.500 0.00 0.00 0.00 2.59
4429 5085 4.306600 CAGACTATGCAGTGTGTGTTACA 58.693 43.478 9.78 0.00 40.35 2.41
4444 5100 4.248859 GTGTTACATCTCATGTCACTGCT 58.751 43.478 0.00 0.00 43.67 4.24
4445 5101 4.092529 GTGTTACATCTCATGTCACTGCTG 59.907 45.833 0.00 0.00 43.67 4.41
4491 5147 3.455910 TGAACCTCTCCCCATTAGTCATG 59.544 47.826 0.00 0.00 0.00 3.07
4503 5159 6.414732 CCCATTAGTCATGTACTTTCTCCAA 58.585 40.000 0.00 0.00 39.80 3.53
4508 5164 5.675538 AGTCATGTACTTTCTCCAATAGCC 58.324 41.667 0.00 0.00 33.35 3.93
4512 5168 6.385759 TCATGTACTTTCTCCAATAGCCCTTA 59.614 38.462 0.00 0.00 0.00 2.69
4515 5171 7.963532 TGTACTTTCTCCAATAGCCCTTATAG 58.036 38.462 0.00 0.00 0.00 1.31
4516 5172 5.870706 ACTTTCTCCAATAGCCCTTATAGC 58.129 41.667 0.00 0.00 0.00 2.97
4517 5173 5.608860 ACTTTCTCCAATAGCCCTTATAGCT 59.391 40.000 0.00 0.00 44.49 3.32
4518 5174 5.489792 TTCTCCAATAGCCCTTATAGCTG 57.510 43.478 0.00 0.00 41.71 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.336125 GAACTATGCATGCAGCCCTTC 59.664 52.381 26.69 17.94 44.83 3.46
1 2 1.396653 GAACTATGCATGCAGCCCTT 58.603 50.000 26.69 13.71 44.83 3.95
2 3 0.466922 GGAACTATGCATGCAGCCCT 60.467 55.000 26.69 11.76 44.83 5.19
3 4 0.752743 TGGAACTATGCATGCAGCCC 60.753 55.000 26.69 19.90 44.83 5.19
4 5 1.325355 ATGGAACTATGCATGCAGCC 58.675 50.000 26.69 19.89 44.83 4.85
5 6 4.572985 TTAATGGAACTATGCATGCAGC 57.427 40.909 26.69 11.94 37.70 5.25
6 7 6.016527 AGACATTAATGGAACTATGCATGCAG 60.017 38.462 26.69 15.79 37.70 4.41
7 8 5.829391 AGACATTAATGGAACTATGCATGCA 59.171 36.000 25.04 25.04 37.70 3.96
8 9 6.016860 TGAGACATTAATGGAACTATGCATGC 60.017 38.462 19.37 11.82 37.70 4.06
9 10 7.500720 TGAGACATTAATGGAACTATGCATG 57.499 36.000 19.37 1.82 37.70 4.06
10 11 7.255381 GCTTGAGACATTAATGGAACTATGCAT 60.255 37.037 19.37 3.79 39.58 3.96
11 12 6.038603 GCTTGAGACATTAATGGAACTATGCA 59.961 38.462 19.37 7.55 0.00 3.96
12 13 6.261826 AGCTTGAGACATTAATGGAACTATGC 59.738 38.462 19.37 13.70 0.00 3.14
13 14 7.798596 AGCTTGAGACATTAATGGAACTATG 57.201 36.000 19.37 5.51 0.00 2.23
14 15 8.814038 AAAGCTTGAGACATTAATGGAACTAT 57.186 30.769 19.37 0.00 0.00 2.12
15 16 9.733556 TTAAAGCTTGAGACATTAATGGAACTA 57.266 29.630 19.37 6.28 0.00 2.24
16 17 8.635765 TTAAAGCTTGAGACATTAATGGAACT 57.364 30.769 19.37 14.29 0.00 3.01
17 18 9.860898 AATTAAAGCTTGAGACATTAATGGAAC 57.139 29.630 19.37 10.18 0.00 3.62
18 19 9.859427 CAATTAAAGCTTGAGACATTAATGGAA 57.141 29.630 19.37 5.98 0.00 3.53
19 20 9.241919 TCAATTAAAGCTTGAGACATTAATGGA 57.758 29.630 19.37 0.00 0.00 3.41
25 26 8.810041 AGGAAATCAATTAAAGCTTGAGACATT 58.190 29.630 0.00 0.00 36.16 2.71
26 27 8.358582 AGGAAATCAATTAAAGCTTGAGACAT 57.641 30.769 0.00 0.00 36.16 3.06
27 28 7.765695 AGGAAATCAATTAAAGCTTGAGACA 57.234 32.000 0.00 0.00 36.16 3.41
28 29 7.062722 GCAAGGAAATCAATTAAAGCTTGAGAC 59.937 37.037 0.00 0.00 36.16 3.36
29 30 7.092716 GCAAGGAAATCAATTAAAGCTTGAGA 58.907 34.615 0.00 0.00 36.16 3.27
30 31 6.869913 TGCAAGGAAATCAATTAAAGCTTGAG 59.130 34.615 0.00 0.00 36.16 3.02
31 32 6.757237 TGCAAGGAAATCAATTAAAGCTTGA 58.243 32.000 0.00 0.00 37.06 3.02
32 33 7.461107 CATGCAAGGAAATCAATTAAAGCTTG 58.539 34.615 0.00 0.00 0.00 4.01
33 34 6.093082 GCATGCAAGGAAATCAATTAAAGCTT 59.907 34.615 14.21 0.00 0.00 3.74
34 35 5.583457 GCATGCAAGGAAATCAATTAAAGCT 59.417 36.000 14.21 0.00 0.00 3.74
35 36 5.352016 TGCATGCAAGGAAATCAATTAAAGC 59.648 36.000 20.30 0.00 0.00 3.51
36 37 6.036735 CCTGCATGCAAGGAAATCAATTAAAG 59.963 38.462 22.88 3.24 0.00 1.85
37 38 5.875910 CCTGCATGCAAGGAAATCAATTAAA 59.124 36.000 22.88 0.00 0.00 1.52
38 39 5.421277 CCTGCATGCAAGGAAATCAATTAA 58.579 37.500 22.88 0.00 0.00 1.40
39 40 4.141892 CCCTGCATGCAAGGAAATCAATTA 60.142 41.667 28.32 0.00 29.21 1.40
40 41 3.370103 CCCTGCATGCAAGGAAATCAATT 60.370 43.478 28.32 0.00 29.21 2.32
41 42 2.169769 CCCTGCATGCAAGGAAATCAAT 59.830 45.455 28.32 0.00 29.21 2.57
42 43 1.551430 CCCTGCATGCAAGGAAATCAA 59.449 47.619 28.32 0.00 29.21 2.57
43 44 1.187974 CCCTGCATGCAAGGAAATCA 58.812 50.000 28.32 0.00 29.21 2.57
44 45 1.135721 GACCCTGCATGCAAGGAAATC 59.864 52.381 36.41 22.06 32.15 2.17
45 46 1.188863 GACCCTGCATGCAAGGAAAT 58.811 50.000 36.41 18.28 32.15 2.17
46 47 0.178967 TGACCCTGCATGCAAGGAAA 60.179 50.000 36.41 22.47 32.15 3.13
47 48 0.040058 ATGACCCTGCATGCAAGGAA 59.960 50.000 36.41 24.94 32.15 3.36
48 49 0.040058 AATGACCCTGCATGCAAGGA 59.960 50.000 36.41 19.18 32.15 3.36
49 50 1.679680 CTAATGACCCTGCATGCAAGG 59.320 52.381 29.92 29.92 33.89 3.61
50 51 2.372264 ACTAATGACCCTGCATGCAAG 58.628 47.619 22.88 16.10 0.00 4.01
51 52 2.512692 ACTAATGACCCTGCATGCAA 57.487 45.000 22.88 6.66 0.00 4.08
52 53 2.512692 AACTAATGACCCTGCATGCA 57.487 45.000 21.29 21.29 0.00 3.96
53 54 5.520376 AATTAACTAATGACCCTGCATGC 57.480 39.130 11.82 11.82 0.00 4.06
54 55 6.545666 TGGTAATTAACTAATGACCCTGCATG 59.454 38.462 11.90 0.00 43.73 4.06
55 56 6.668645 TGGTAATTAACTAATGACCCTGCAT 58.331 36.000 11.90 0.00 43.73 3.96
56 57 6.068461 TGGTAATTAACTAATGACCCTGCA 57.932 37.500 11.90 0.00 43.73 4.41
57 58 6.770785 TGATGGTAATTAACTAATGACCCTGC 59.229 38.462 11.90 4.21 43.73 4.85
58 59 8.746052 TTGATGGTAATTAACTAATGACCCTG 57.254 34.615 11.90 0.00 43.73 4.45
59 60 7.998964 CCTTGATGGTAATTAACTAATGACCCT 59.001 37.037 11.90 4.12 43.73 4.34
60 61 7.996644 TCCTTGATGGTAATTAACTAATGACCC 59.003 37.037 11.90 1.16 43.73 4.46
61 62 8.974060 TCCTTGATGGTAATTAACTAATGACC 57.026 34.615 8.56 8.56 44.34 4.02
72 73 8.758829 GGTTTCCTTATTTCCTTGATGGTAATT 58.241 33.333 0.00 0.00 37.13 1.40
73 74 7.068226 CGGTTTCCTTATTTCCTTGATGGTAAT 59.932 37.037 0.00 0.00 38.92 1.89
74 75 6.376018 CGGTTTCCTTATTTCCTTGATGGTAA 59.624 38.462 0.00 0.00 37.07 2.85
75 76 5.883673 CGGTTTCCTTATTTCCTTGATGGTA 59.116 40.000 0.00 0.00 37.07 3.25
76 77 4.705023 CGGTTTCCTTATTTCCTTGATGGT 59.295 41.667 0.00 0.00 37.07 3.55
77 78 4.440112 GCGGTTTCCTTATTTCCTTGATGG 60.440 45.833 0.00 0.00 37.10 3.51
78 79 4.399303 AGCGGTTTCCTTATTTCCTTGATG 59.601 41.667 0.00 0.00 0.00 3.07
79 80 4.600062 AGCGGTTTCCTTATTTCCTTGAT 58.400 39.130 0.00 0.00 0.00 2.57
80 81 4.007659 GAGCGGTTTCCTTATTTCCTTGA 58.992 43.478 0.00 0.00 0.00 3.02
81 82 3.128764 GGAGCGGTTTCCTTATTTCCTTG 59.871 47.826 0.00 0.00 34.27 3.61
82 83 3.245122 TGGAGCGGTTTCCTTATTTCCTT 60.245 43.478 0.00 0.00 38.12 3.36
83 84 2.307686 TGGAGCGGTTTCCTTATTTCCT 59.692 45.455 0.00 0.00 38.12 3.36
84 85 2.718563 TGGAGCGGTTTCCTTATTTCC 58.281 47.619 0.00 0.00 38.12 3.13
85 86 6.635030 AATATGGAGCGGTTTCCTTATTTC 57.365 37.500 12.07 0.00 41.29 2.17
87 88 5.221244 GCAAATATGGAGCGGTTTCCTTATT 60.221 40.000 12.07 12.07 43.74 1.40
88 89 4.278419 GCAAATATGGAGCGGTTTCCTTAT 59.722 41.667 0.00 0.00 38.52 1.73
89 90 3.630312 GCAAATATGGAGCGGTTTCCTTA 59.370 43.478 0.00 0.00 38.12 2.69
90 91 2.427095 GCAAATATGGAGCGGTTTCCTT 59.573 45.455 0.00 0.00 38.12 3.36
91 92 2.024414 GCAAATATGGAGCGGTTTCCT 58.976 47.619 0.00 0.00 38.12 3.36
92 93 2.024414 AGCAAATATGGAGCGGTTTCC 58.976 47.619 0.00 0.00 37.77 3.13
93 94 2.033424 GGAGCAAATATGGAGCGGTTTC 59.967 50.000 0.00 0.00 0.00 2.78
94 95 2.024414 GGAGCAAATATGGAGCGGTTT 58.976 47.619 0.00 0.00 0.00 3.27
95 96 1.212935 AGGAGCAAATATGGAGCGGTT 59.787 47.619 0.00 0.00 0.00 4.44
96 97 0.839946 AGGAGCAAATATGGAGCGGT 59.160 50.000 0.00 0.00 0.00 5.68
97 98 1.202687 TCAGGAGCAAATATGGAGCGG 60.203 52.381 0.00 0.00 0.00 5.52
98 99 2.141517 CTCAGGAGCAAATATGGAGCG 58.858 52.381 0.00 0.00 0.00 5.03
99 100 3.482156 TCTCAGGAGCAAATATGGAGC 57.518 47.619 0.00 0.00 0.00 4.70
100 101 4.970711 ACATCTCAGGAGCAAATATGGAG 58.029 43.478 0.00 0.00 0.00 3.86
101 102 5.512060 GCTACATCTCAGGAGCAAATATGGA 60.512 44.000 0.00 0.00 34.96 3.41
102 103 4.694509 GCTACATCTCAGGAGCAAATATGG 59.305 45.833 0.00 0.00 34.96 2.74
103 104 4.388165 CGCTACATCTCAGGAGCAAATATG 59.612 45.833 0.00 0.00 34.49 1.78
104 105 4.281941 TCGCTACATCTCAGGAGCAAATAT 59.718 41.667 0.00 0.00 34.49 1.28
105 106 3.636764 TCGCTACATCTCAGGAGCAAATA 59.363 43.478 0.00 0.00 34.49 1.40
106 107 2.432146 TCGCTACATCTCAGGAGCAAAT 59.568 45.455 0.00 0.00 34.49 2.32
107 108 1.824852 TCGCTACATCTCAGGAGCAAA 59.175 47.619 0.00 0.00 34.49 3.68
108 109 1.474330 TCGCTACATCTCAGGAGCAA 58.526 50.000 0.00 0.00 34.49 3.91
109 110 1.611006 GATCGCTACATCTCAGGAGCA 59.389 52.381 0.00 0.00 34.49 4.26
110 111 1.400888 CGATCGCTACATCTCAGGAGC 60.401 57.143 0.26 0.00 0.00 4.70
111 112 1.876799 ACGATCGCTACATCTCAGGAG 59.123 52.381 16.60 0.00 0.00 3.69
112 113 1.968704 ACGATCGCTACATCTCAGGA 58.031 50.000 16.60 0.00 0.00 3.86
113 114 2.389059 CAACGATCGCTACATCTCAGG 58.611 52.381 16.60 0.00 0.00 3.86
114 115 2.389059 CCAACGATCGCTACATCTCAG 58.611 52.381 16.60 0.00 0.00 3.35
115 116 1.067060 CCCAACGATCGCTACATCTCA 59.933 52.381 16.60 0.00 0.00 3.27
116 117 1.067212 ACCCAACGATCGCTACATCTC 59.933 52.381 16.60 0.00 0.00 2.75
117 118 1.112113 ACCCAACGATCGCTACATCT 58.888 50.000 16.60 0.00 0.00 2.90
118 119 1.209128 CACCCAACGATCGCTACATC 58.791 55.000 16.60 0.00 0.00 3.06
119 120 0.535335 ACACCCAACGATCGCTACAT 59.465 50.000 16.60 0.00 0.00 2.29
120 121 0.319083 AACACCCAACGATCGCTACA 59.681 50.000 16.60 0.00 0.00 2.74
121 122 0.719465 CAACACCCAACGATCGCTAC 59.281 55.000 16.60 0.00 0.00 3.58
122 123 0.604073 TCAACACCCAACGATCGCTA 59.396 50.000 16.60 0.00 0.00 4.26
123 124 0.670546 CTCAACACCCAACGATCGCT 60.671 55.000 16.60 0.00 0.00 4.93
124 125 0.949105 ACTCAACACCCAACGATCGC 60.949 55.000 16.60 0.00 0.00 4.58
125 126 1.068474 GACTCAACACCCAACGATCG 58.932 55.000 14.88 14.88 0.00 3.69
126 127 1.068474 CGACTCAACACCCAACGATC 58.932 55.000 0.00 0.00 0.00 3.69
127 128 0.391597 ACGACTCAACACCCAACGAT 59.608 50.000 0.00 0.00 0.00 3.73
128 129 0.249155 GACGACTCAACACCCAACGA 60.249 55.000 0.00 0.00 0.00 3.85
129 130 0.249322 AGACGACTCAACACCCAACG 60.249 55.000 0.00 0.00 0.00 4.10
130 131 1.499049 GAGACGACTCAACACCCAAC 58.501 55.000 10.08 0.00 42.21 3.77
131 132 0.031585 CGAGACGACTCAACACCCAA 59.968 55.000 14.99 0.00 42.72 4.12
132 133 1.658114 CGAGACGACTCAACACCCA 59.342 57.895 14.99 0.00 42.72 4.51
133 134 1.733399 GCGAGACGACTCAACACCC 60.733 63.158 14.99 0.00 42.72 4.61
134 135 0.388649 ATGCGAGACGACTCAACACC 60.389 55.000 14.99 0.00 42.72 4.16
135 136 0.710567 CATGCGAGACGACTCAACAC 59.289 55.000 14.99 2.15 42.72 3.32
136 137 0.596082 TCATGCGAGACGACTCAACA 59.404 50.000 14.99 11.97 42.72 3.33
137 138 0.985549 GTCATGCGAGACGACTCAAC 59.014 55.000 14.99 6.81 42.72 3.18
138 139 3.401577 GTCATGCGAGACGACTCAA 57.598 52.632 14.99 2.97 42.72 3.02
151 152 3.190849 CTGCCCTCGCACGTCATG 61.191 66.667 0.00 0.00 41.12 3.07
152 153 4.457496 CCTGCCCTCGCACGTCAT 62.457 66.667 0.00 0.00 41.12 3.06
171 172 0.813184 ATGAAATGTTCTGCCGGCAG 59.187 50.000 44.24 44.24 44.86 4.85
172 173 0.810648 GATGAAATGTTCTGCCGGCA 59.189 50.000 30.59 30.59 0.00 5.69
173 174 1.064654 GAGATGAAATGTTCTGCCGGC 59.935 52.381 22.73 22.73 0.00 6.13
174 175 2.358957 TGAGATGAAATGTTCTGCCGG 58.641 47.619 0.00 0.00 0.00 6.13
175 176 3.426695 GGTTGAGATGAAATGTTCTGCCG 60.427 47.826 0.00 0.00 0.00 5.69
176 177 3.426695 CGGTTGAGATGAAATGTTCTGCC 60.427 47.826 0.00 0.00 0.00 4.85
177 178 3.189287 ACGGTTGAGATGAAATGTTCTGC 59.811 43.478 0.00 0.00 0.00 4.26
178 179 5.049474 TCAACGGTTGAGATGAAATGTTCTG 60.049 40.000 19.07 0.00 34.08 3.02
179 180 5.063204 TCAACGGTTGAGATGAAATGTTCT 58.937 37.500 19.07 0.00 34.08 3.01
180 181 5.356882 TCAACGGTTGAGATGAAATGTTC 57.643 39.130 19.07 0.00 34.08 3.18
181 182 5.299279 AGTTCAACGGTTGAGATGAAATGTT 59.701 36.000 21.47 0.02 41.38 2.71
182 183 4.821805 AGTTCAACGGTTGAGATGAAATGT 59.178 37.500 21.47 0.00 41.38 2.71
183 184 5.049474 TGAGTTCAACGGTTGAGATGAAATG 60.049 40.000 21.47 0.00 41.38 2.32
184 185 5.049405 GTGAGTTCAACGGTTGAGATGAAAT 60.049 40.000 21.47 7.79 41.38 2.17
185 186 4.272504 GTGAGTTCAACGGTTGAGATGAAA 59.727 41.667 21.47 5.24 41.38 2.69
186 187 3.807622 GTGAGTTCAACGGTTGAGATGAA 59.192 43.478 21.47 5.94 41.38 2.57
187 188 3.181470 TGTGAGTTCAACGGTTGAGATGA 60.181 43.478 21.47 6.30 41.38 2.92
188 189 3.130633 TGTGAGTTCAACGGTTGAGATG 58.869 45.455 21.47 0.00 41.38 2.90
189 190 3.069586 TCTGTGAGTTCAACGGTTGAGAT 59.930 43.478 21.47 14.90 41.38 2.75
190 191 2.429250 TCTGTGAGTTCAACGGTTGAGA 59.571 45.455 21.47 12.01 41.38 3.27
191 192 2.821546 TCTGTGAGTTCAACGGTTGAG 58.178 47.619 21.47 10.03 41.38 3.02
192 193 2.971660 TCTGTGAGTTCAACGGTTGA 57.028 45.000 19.07 19.07 38.04 3.18
193 194 4.552166 AAATCTGTGAGTTCAACGGTTG 57.448 40.909 14.62 14.62 0.00 3.77
194 195 5.587043 TGTTAAATCTGTGAGTTCAACGGTT 59.413 36.000 0.00 0.00 0.00 4.44
195 196 5.120399 TGTTAAATCTGTGAGTTCAACGGT 58.880 37.500 0.00 0.00 0.00 4.83
196 197 5.666969 TGTTAAATCTGTGAGTTCAACGG 57.333 39.130 0.00 0.00 0.00 4.44
197 198 6.079763 CCATGTTAAATCTGTGAGTTCAACG 58.920 40.000 0.00 0.00 0.00 4.10
198 199 6.381801 CCCATGTTAAATCTGTGAGTTCAAC 58.618 40.000 0.00 0.00 0.00 3.18
199 200 5.048083 GCCCATGTTAAATCTGTGAGTTCAA 60.048 40.000 0.00 0.00 0.00 2.69
200 201 4.458989 GCCCATGTTAAATCTGTGAGTTCA 59.541 41.667 0.00 0.00 0.00 3.18
201 202 4.458989 TGCCCATGTTAAATCTGTGAGTTC 59.541 41.667 0.00 0.00 0.00 3.01
202 203 4.406456 TGCCCATGTTAAATCTGTGAGTT 58.594 39.130 0.00 0.00 0.00 3.01
203 204 4.012374 CTGCCCATGTTAAATCTGTGAGT 58.988 43.478 0.00 0.00 0.00 3.41
204 205 4.012374 ACTGCCCATGTTAAATCTGTGAG 58.988 43.478 0.00 0.00 0.00 3.51
205 206 4.032960 ACTGCCCATGTTAAATCTGTGA 57.967 40.909 0.00 0.00 0.00 3.58
206 207 4.487948 CAACTGCCCATGTTAAATCTGTG 58.512 43.478 0.00 0.00 0.00 3.66
207 208 3.511146 CCAACTGCCCATGTTAAATCTGT 59.489 43.478 0.00 0.00 0.00 3.41
208 209 3.763360 TCCAACTGCCCATGTTAAATCTG 59.237 43.478 0.00 0.00 0.00 2.90
209 210 4.046286 TCCAACTGCCCATGTTAAATCT 57.954 40.909 0.00 0.00 0.00 2.40
210 211 4.160252 ACATCCAACTGCCCATGTTAAATC 59.840 41.667 0.00 0.00 0.00 2.17
211 212 4.081531 CACATCCAACTGCCCATGTTAAAT 60.082 41.667 0.00 0.00 0.00 1.40
212 213 3.257873 CACATCCAACTGCCCATGTTAAA 59.742 43.478 0.00 0.00 0.00 1.52
213 214 2.824936 CACATCCAACTGCCCATGTTAA 59.175 45.455 0.00 0.00 0.00 2.01
214 215 2.040947 TCACATCCAACTGCCCATGTTA 59.959 45.455 0.00 0.00 0.00 2.41
215 216 1.203038 TCACATCCAACTGCCCATGTT 60.203 47.619 0.00 0.00 0.00 2.71
216 217 0.405198 TCACATCCAACTGCCCATGT 59.595 50.000 0.00 0.00 0.00 3.21
217 218 1.771565 ATCACATCCAACTGCCCATG 58.228 50.000 0.00 0.00 0.00 3.66
218 219 2.537633 AATCACATCCAACTGCCCAT 57.462 45.000 0.00 0.00 0.00 4.00
219 220 2.307496 AAATCACATCCAACTGCCCA 57.693 45.000 0.00 0.00 0.00 5.36
220 221 2.099756 GCTAAATCACATCCAACTGCCC 59.900 50.000 0.00 0.00 0.00 5.36
221 222 3.019564 AGCTAAATCACATCCAACTGCC 58.980 45.455 0.00 0.00 0.00 4.85
222 223 4.418392 CAAGCTAAATCACATCCAACTGC 58.582 43.478 0.00 0.00 0.00 4.40
223 224 4.157289 AGCAAGCTAAATCACATCCAACTG 59.843 41.667 0.00 0.00 0.00 3.16
224 225 4.338879 AGCAAGCTAAATCACATCCAACT 58.661 39.130 0.00 0.00 0.00 3.16
225 226 4.708726 AGCAAGCTAAATCACATCCAAC 57.291 40.909 0.00 0.00 0.00 3.77
226 227 5.744171 TCTAGCAAGCTAAATCACATCCAA 58.256 37.500 3.11 0.00 0.00 3.53
227 228 5.357742 TCTAGCAAGCTAAATCACATCCA 57.642 39.130 3.11 0.00 0.00 3.41
228 229 5.119898 CGATCTAGCAAGCTAAATCACATCC 59.880 44.000 13.94 0.00 28.13 3.51
229 230 5.119898 CCGATCTAGCAAGCTAAATCACATC 59.880 44.000 13.94 4.45 28.13 3.06
230 231 4.993584 CCGATCTAGCAAGCTAAATCACAT 59.006 41.667 13.94 0.00 28.13 3.21
231 232 4.099419 TCCGATCTAGCAAGCTAAATCACA 59.901 41.667 13.94 0.00 28.13 3.58
232 233 4.446051 GTCCGATCTAGCAAGCTAAATCAC 59.554 45.833 13.94 3.96 28.13 3.06
233 234 4.621991 GTCCGATCTAGCAAGCTAAATCA 58.378 43.478 13.94 0.00 28.13 2.57
234 235 3.670991 CGTCCGATCTAGCAAGCTAAATC 59.329 47.826 5.52 5.52 0.00 2.17
235 236 3.068307 ACGTCCGATCTAGCAAGCTAAAT 59.932 43.478 3.11 0.00 0.00 1.40
236 237 2.426024 ACGTCCGATCTAGCAAGCTAAA 59.574 45.455 3.11 0.00 0.00 1.85
237 238 2.022195 ACGTCCGATCTAGCAAGCTAA 58.978 47.619 3.11 0.00 0.00 3.09
238 239 1.676746 ACGTCCGATCTAGCAAGCTA 58.323 50.000 1.37 1.37 0.00 3.32
239 240 0.818296 AACGTCCGATCTAGCAAGCT 59.182 50.000 0.00 0.00 0.00 3.74
240 241 1.201343 GAACGTCCGATCTAGCAAGC 58.799 55.000 0.00 0.00 0.00 4.01
241 242 1.202154 ACGAACGTCCGATCTAGCAAG 60.202 52.381 0.00 0.00 0.00 4.01
242 243 0.806868 ACGAACGTCCGATCTAGCAA 59.193 50.000 0.00 0.00 0.00 3.91
243 244 0.098200 CACGAACGTCCGATCTAGCA 59.902 55.000 0.00 0.00 0.00 3.49
244 245 0.591741 CCACGAACGTCCGATCTAGC 60.592 60.000 0.00 0.00 0.00 3.42
245 246 0.731417 ACCACGAACGTCCGATCTAG 59.269 55.000 0.00 0.00 0.00 2.43
246 247 1.167851 AACCACGAACGTCCGATCTA 58.832 50.000 0.00 0.00 0.00 1.98
247 248 0.316204 AAACCACGAACGTCCGATCT 59.684 50.000 0.00 0.00 0.00 2.75
248 249 0.712222 GAAACCACGAACGTCCGATC 59.288 55.000 0.00 0.00 0.00 3.69
249 250 0.316204 AGAAACCACGAACGTCCGAT 59.684 50.000 0.00 0.00 0.00 4.18
250 251 0.318107 GAGAAACCACGAACGTCCGA 60.318 55.000 0.00 0.00 0.00 4.55
251 252 0.318445 AGAGAAACCACGAACGTCCG 60.318 55.000 0.00 0.00 0.00 4.79
252 253 1.137513 CAGAGAAACCACGAACGTCC 58.862 55.000 0.00 0.00 0.00 4.79
253 254 1.521423 CACAGAGAAACCACGAACGTC 59.479 52.381 0.00 0.00 0.00 4.34
254 255 1.134907 ACACAGAGAAACCACGAACGT 60.135 47.619 0.00 0.00 0.00 3.99
255 256 1.257936 CACACAGAGAAACCACGAACG 59.742 52.381 0.00 0.00 0.00 3.95
256 257 2.277084 ACACACAGAGAAACCACGAAC 58.723 47.619 0.00 0.00 0.00 3.95
257 258 2.684001 ACACACAGAGAAACCACGAA 57.316 45.000 0.00 0.00 0.00 3.85
258 259 2.691526 AGTACACACAGAGAAACCACGA 59.308 45.455 0.00 0.00 0.00 4.35
259 260 3.093717 AGTACACACAGAGAAACCACG 57.906 47.619 0.00 0.00 0.00 4.94
260 261 4.439057 TGAAGTACACACAGAGAAACCAC 58.561 43.478 0.00 0.00 0.00 4.16
261 262 4.442893 CCTGAAGTACACACAGAGAAACCA 60.443 45.833 13.03 0.00 34.07 3.67
262 263 4.058817 CCTGAAGTACACACAGAGAAACC 58.941 47.826 13.03 0.00 34.07 3.27
263 264 4.058817 CCCTGAAGTACACACAGAGAAAC 58.941 47.826 13.03 0.00 34.07 2.78
264 265 3.709653 ACCCTGAAGTACACACAGAGAAA 59.290 43.478 13.03 0.00 34.07 2.52
265 266 3.069586 CACCCTGAAGTACACACAGAGAA 59.930 47.826 13.03 0.00 34.07 2.87
266 267 2.628178 CACCCTGAAGTACACACAGAGA 59.372 50.000 13.03 0.00 34.07 3.10
267 268 2.365617 ACACCCTGAAGTACACACAGAG 59.634 50.000 13.03 5.21 34.07 3.35
268 269 2.102420 CACACCCTGAAGTACACACAGA 59.898 50.000 13.03 0.00 34.07 3.41
269 270 2.158957 ACACACCCTGAAGTACACACAG 60.159 50.000 0.00 1.44 0.00 3.66
270 271 1.834896 ACACACCCTGAAGTACACACA 59.165 47.619 0.00 0.00 0.00 3.72
271 272 2.480845 GACACACCCTGAAGTACACAC 58.519 52.381 0.00 0.00 0.00 3.82
272 273 1.414919 GGACACACCCTGAAGTACACA 59.585 52.381 0.00 0.00 0.00 3.72
273 274 1.414919 TGGACACACCCTGAAGTACAC 59.585 52.381 0.00 0.00 38.00 2.90
274 275 1.796017 TGGACACACCCTGAAGTACA 58.204 50.000 0.00 0.00 38.00 2.90
275 276 4.546829 TTATGGACACACCCTGAAGTAC 57.453 45.455 0.00 0.00 38.00 2.73
276 277 5.570205 TTTTATGGACACACCCTGAAGTA 57.430 39.130 0.00 0.00 38.00 2.24
277 278 4.447138 TTTTATGGACACACCCTGAAGT 57.553 40.909 0.00 0.00 38.00 3.01
321 322 8.575589 CGAATGGAGTACTAGTCTCTACTACTA 58.424 40.741 16.73 2.88 37.15 1.82
322 323 7.069826 ACGAATGGAGTACTAGTCTCTACTACT 59.930 40.741 16.73 7.00 37.15 2.57
323 324 7.209475 ACGAATGGAGTACTAGTCTCTACTAC 58.791 42.308 16.73 9.59 37.15 2.73
324 325 7.358770 ACGAATGGAGTACTAGTCTCTACTA 57.641 40.000 16.73 0.00 37.15 1.82
325 326 6.237887 ACGAATGGAGTACTAGTCTCTACT 57.762 41.667 16.73 8.53 39.91 2.57
326 327 6.923928 AACGAATGGAGTACTAGTCTCTAC 57.076 41.667 16.73 11.01 33.06 2.59
327 328 7.934855 AAAACGAATGGAGTACTAGTCTCTA 57.065 36.000 16.73 13.31 33.06 2.43
328 329 6.837471 AAAACGAATGGAGTACTAGTCTCT 57.163 37.500 16.73 10.08 33.06 3.10
329 330 8.976986 TTTAAAACGAATGGAGTACTAGTCTC 57.023 34.615 0.00 6.23 0.00 3.36
330 331 9.939802 ATTTTAAAACGAATGGAGTACTAGTCT 57.060 29.630 1.97 0.00 0.00 3.24
338 339 8.674607 GGTCATCTATTTTAAAACGAATGGAGT 58.325 33.333 1.97 0.00 0.00 3.85
339 340 8.129211 GGGTCATCTATTTTAAAACGAATGGAG 58.871 37.037 1.97 0.00 0.00 3.86
340 341 7.612244 TGGGTCATCTATTTTAAAACGAATGGA 59.388 33.333 1.97 0.00 0.00 3.41
341 342 7.767261 TGGGTCATCTATTTTAAAACGAATGG 58.233 34.615 1.97 0.00 0.00 3.16
342 343 9.801873 ATTGGGTCATCTATTTTAAAACGAATG 57.198 29.630 1.97 7.24 0.00 2.67
344 345 8.178964 CGATTGGGTCATCTATTTTAAAACGAA 58.821 33.333 1.97 0.00 0.00 3.85
345 346 7.201661 CCGATTGGGTCATCTATTTTAAAACGA 60.202 37.037 1.97 3.65 0.00 3.85
346 347 6.910433 CCGATTGGGTCATCTATTTTAAAACG 59.090 38.462 1.97 0.00 0.00 3.60
347 348 7.992008 TCCGATTGGGTCATCTATTTTAAAAC 58.008 34.615 1.97 0.00 37.00 2.43
348 349 7.832187 ACTCCGATTGGGTCATCTATTTTAAAA 59.168 33.333 2.51 2.51 37.00 1.52
349 350 7.343357 ACTCCGATTGGGTCATCTATTTTAAA 58.657 34.615 0.00 0.00 37.00 1.52
350 351 6.895782 ACTCCGATTGGGTCATCTATTTTAA 58.104 36.000 0.00 0.00 37.00 1.52
351 352 6.494666 ACTCCGATTGGGTCATCTATTTTA 57.505 37.500 0.00 0.00 37.00 1.52
352 353 5.373812 ACTCCGATTGGGTCATCTATTTT 57.626 39.130 0.00 0.00 37.00 1.82
353 354 6.099845 AGTTACTCCGATTGGGTCATCTATTT 59.900 38.462 0.00 0.00 37.00 1.40
354 355 5.602978 AGTTACTCCGATTGGGTCATCTATT 59.397 40.000 0.00 0.00 37.00 1.73
355 356 5.011125 CAGTTACTCCGATTGGGTCATCTAT 59.989 44.000 0.00 0.00 37.00 1.98
356 357 4.341235 CAGTTACTCCGATTGGGTCATCTA 59.659 45.833 0.00 0.00 37.00 1.98
357 358 3.133003 CAGTTACTCCGATTGGGTCATCT 59.867 47.826 0.00 0.00 37.00 2.90
358 359 3.458189 CAGTTACTCCGATTGGGTCATC 58.542 50.000 0.00 0.00 37.00 2.92
359 360 2.420129 GCAGTTACTCCGATTGGGTCAT 60.420 50.000 0.00 0.00 37.00 3.06
360 361 1.066430 GCAGTTACTCCGATTGGGTCA 60.066 52.381 0.00 0.00 37.00 4.02
361 362 1.653151 GCAGTTACTCCGATTGGGTC 58.347 55.000 0.00 0.00 37.00 4.46
362 363 0.108329 CGCAGTTACTCCGATTGGGT 60.108 55.000 0.00 0.00 37.00 4.51
363 364 0.108329 ACGCAGTTACTCCGATTGGG 60.108 55.000 1.58 0.00 37.78 4.12
364 365 2.190981 GTACGCAGTTACTCCGATTGG 58.809 52.381 1.58 0.00 37.78 3.16
365 366 1.844357 CGTACGCAGTTACTCCGATTG 59.156 52.381 1.58 0.00 37.78 2.67
366 367 1.470098 ACGTACGCAGTTACTCCGATT 59.530 47.619 16.72 0.00 37.78 3.34
367 368 1.089920 ACGTACGCAGTTACTCCGAT 58.910 50.000 16.72 0.00 37.78 4.18
368 369 0.166597 CACGTACGCAGTTACTCCGA 59.833 55.000 16.72 0.00 37.78 4.55
369 370 0.110056 ACACGTACGCAGTTACTCCG 60.110 55.000 16.72 0.00 37.78 4.63
370 371 2.900122 TACACGTACGCAGTTACTCC 57.100 50.000 16.72 0.00 37.78 3.85
371 372 4.161333 ACATTACACGTACGCAGTTACTC 58.839 43.478 16.72 0.00 37.78 2.59
377 378 4.559643 TCAATGTACATTACACGTACGCAG 59.440 41.667 20.39 11.09 42.23 5.18
508 509 9.507280 AAAATGATGAACGCTCAACATATTTAG 57.493 29.630 11.37 0.00 42.47 1.85
513 514 6.597672 ACCTAAAATGATGAACGCTCAACATA 59.402 34.615 11.37 0.00 42.47 2.29
519 520 5.741388 ATGACCTAAAATGATGAACGCTC 57.259 39.130 0.00 0.00 0.00 5.03
539 540 6.037391 GGCCATCAAACCATGTCAATTTAATG 59.963 38.462 0.00 0.00 0.00 1.90
540 541 6.114767 GGCCATCAAACCATGTCAATTTAAT 58.885 36.000 0.00 0.00 0.00 1.40
599 602 1.133606 TCTTCTTTTGCCGGGAAGGTT 60.134 47.619 8.88 0.00 43.70 3.50
607 610 3.751175 TGTGTATCCTTCTTCTTTTGCCG 59.249 43.478 0.00 0.00 0.00 5.69
608 611 4.378459 CGTGTGTATCCTTCTTCTTTTGCC 60.378 45.833 0.00 0.00 0.00 4.52
619 622 1.402259 CTCGAGAGCGTGTGTATCCTT 59.598 52.381 6.58 0.00 38.98 3.36
620 623 1.018148 CTCGAGAGCGTGTGTATCCT 58.982 55.000 6.58 0.00 38.98 3.24
621 624 0.592754 GCTCGAGAGCGTGTGTATCC 60.593 60.000 18.75 0.00 45.29 2.59
689 692 5.339008 TGTTACTCCTATGTAAGGTGCAG 57.661 43.478 0.00 0.00 46.62 4.41
972 990 2.572284 CGGAGTGGAAGACGGGAC 59.428 66.667 0.00 0.00 0.00 4.46
973 991 3.379445 GCGGAGTGGAAGACGGGA 61.379 66.667 0.00 0.00 0.00 5.14
974 992 4.452733 GGCGGAGTGGAAGACGGG 62.453 72.222 0.00 0.00 0.00 5.28
975 993 3.358076 GAGGCGGAGTGGAAGACGG 62.358 68.421 0.00 0.00 0.00 4.79
993 1011 4.505217 GCGTGCGAGGCGTGAATG 62.505 66.667 0.00 0.00 0.00 2.67
1371 1410 5.422012 AGCAGGGTTCTTGAAAGAAAAAGAA 59.578 36.000 7.05 0.00 45.77 2.52
1373 1412 5.045872 CAGCAGGGTTCTTGAAAGAAAAAG 58.954 41.667 7.05 0.60 45.77 2.27
1382 1422 0.036010 GCTAGCAGCAGGGTTCTTGA 60.036 55.000 10.63 0.00 41.89 3.02
1386 1426 0.179070 GGTAGCTAGCAGCAGGGTTC 60.179 60.000 18.83 0.00 45.56 3.62
1400 1440 4.844884 AGAGGATTTAAACCAGTGGTAGC 58.155 43.478 17.09 1.78 33.12 3.58
1406 1446 6.441088 AGTCTGAAGAGGATTTAAACCAGT 57.559 37.500 8.80 0.00 0.00 4.00
1418 1458 4.904241 AGTCAAAATGGAGTCTGAAGAGG 58.096 43.478 0.00 0.00 0.00 3.69
1427 1467 6.573434 GTTTCCTCAAAAGTCAAAATGGAGT 58.427 36.000 0.00 0.00 0.00 3.85
1444 1484 5.629079 AAGAATGTCCATTTCGTTTCCTC 57.371 39.130 0.00 0.00 0.00 3.71
1877 1917 5.449297 TCCATACATTTCCCAATCTGACA 57.551 39.130 0.00 0.00 0.00 3.58
1878 1918 6.966534 AATCCATACATTTCCCAATCTGAC 57.033 37.500 0.00 0.00 0.00 3.51
1879 1919 7.073598 TCCTAATCCATACATTTCCCAATCTGA 59.926 37.037 0.00 0.00 0.00 3.27
1880 1920 7.233632 TCCTAATCCATACATTTCCCAATCTG 58.766 38.462 0.00 0.00 0.00 2.90
1881 1921 7.406620 TCCTAATCCATACATTTCCCAATCT 57.593 36.000 0.00 0.00 0.00 2.40
1882 1922 8.526147 CAATCCTAATCCATACATTTCCCAATC 58.474 37.037 0.00 0.00 0.00 2.67
1885 1925 6.125919 ACCAATCCTAATCCATACATTTCCCA 60.126 38.462 0.00 0.00 0.00 4.37
1886 1926 6.209391 CACCAATCCTAATCCATACATTTCCC 59.791 42.308 0.00 0.00 0.00 3.97
1925 2435 3.112580 CGTCCACCAACAAAACAACATC 58.887 45.455 0.00 0.00 0.00 3.06
2143 2654 4.801147 TCTAAAATGCAGATGCGCTAAG 57.199 40.909 9.73 0.00 45.83 2.18
2154 2665 6.179756 TCTCACCTTTAGCATCTAAAATGCA 58.820 36.000 12.12 0.00 46.77 3.96
2157 2668 9.692325 ATTTCTCTCACCTTTAGCATCTAAAAT 57.308 29.630 1.38 0.00 0.00 1.82
2159 2670 8.950210 CAATTTCTCTCACCTTTAGCATCTAAA 58.050 33.333 0.00 0.00 0.00 1.85
2165 2676 3.758554 GCCAATTTCTCTCACCTTTAGCA 59.241 43.478 0.00 0.00 0.00 3.49
2235 2758 4.238514 CAAATCCCTAGCGTCTAGTATGC 58.761 47.826 11.31 0.00 40.71 3.14
2314 2840 0.952280 TGTGTCAGACGTGAGAGTCC 59.048 55.000 0.00 0.00 41.83 3.85
2387 2913 7.429636 TGGTAAGTAGTAATTTGCAGTGTTC 57.570 36.000 0.00 0.00 0.00 3.18
2515 3042 1.152830 GGGCTGGAAAGGAACACCA 59.847 57.895 0.00 0.00 0.00 4.17
2647 3182 6.092259 GTCGATGCTTAGATGTTTTAAGTGGT 59.908 38.462 0.00 0.00 32.09 4.16
2800 3431 5.163814 GGACTTCTGTGCATCTTGTACATTC 60.164 44.000 0.00 0.00 41.89 2.67
2805 3436 3.306989 CCAGGACTTCTGTGCATCTTGTA 60.307 47.826 0.00 0.00 41.83 2.41
2847 3478 2.975489 TGAAGAAAGCAGAGACTTCCCT 59.025 45.455 0.00 0.00 38.22 4.20
2863 3494 2.701551 TCAGTTTTCCCCCTCTGAAGA 58.298 47.619 0.00 0.00 34.61 2.87
2994 3626 1.076632 CTCTACCTCGAGGGCCAGT 60.077 63.158 34.04 16.20 40.27 4.00
3009 3641 0.323908 CTCTCCTTGGGTCGTCCTCT 60.324 60.000 0.00 0.00 36.20 3.69
3210 3842 3.842923 CTGACGAGCAGCCCGGAT 61.843 66.667 0.73 0.00 37.90 4.18
3246 3878 3.391382 GTCGGGTCCCTGGAGGTG 61.391 72.222 6.29 0.00 36.75 4.00
3249 3881 2.044650 TACGTCGGGTCCCTGGAG 60.045 66.667 6.29 0.00 0.00 3.86
3252 3884 2.677524 TGGTACGTCGGGTCCCTG 60.678 66.667 6.29 0.00 0.00 4.45
3320 3952 1.354337 CTCCATGTCGAACCTGTGCG 61.354 60.000 0.00 0.00 0.00 5.34
3384 4016 2.426414 GGGACCATGAGGAGGATAGTGA 60.426 54.545 0.00 0.00 38.69 3.41
3390 4022 1.274703 GCTTGGGACCATGAGGAGGA 61.275 60.000 8.28 0.00 38.69 3.71
3391 4023 1.225704 GCTTGGGACCATGAGGAGG 59.774 63.158 8.28 0.00 38.69 4.30
3392 4024 0.622665 AAGCTTGGGACCATGAGGAG 59.377 55.000 0.00 0.00 38.69 3.69
3402 4034 2.435372 ACAAGTTGTGAAGCTTGGGA 57.565 45.000 7.96 0.00 44.45 4.37
3425 4057 2.290577 GCTGGGAGATTTCACTTCAGGT 60.291 50.000 0.00 0.00 0.00 4.00
3428 4060 2.290514 CCAGCTGGGAGATTTCACTTCA 60.291 50.000 26.14 0.00 40.01 3.02
3430 4062 1.988107 TCCAGCTGGGAGATTTCACTT 59.012 47.619 32.23 0.00 42.15 3.16
3431 4063 1.661463 TCCAGCTGGGAGATTTCACT 58.339 50.000 32.23 0.00 42.15 3.41
3459 4091 5.221422 GCTACATATTTGCCTATTGCCCAAA 60.221 40.000 0.00 0.00 40.16 3.28
3574 4206 4.828939 CCATAATGGCATAATGACAGTGGT 59.171 41.667 0.00 0.00 39.76 4.16
3601 4233 6.797033 CGTAGCTTTCAACTTCAAAACATAGG 59.203 38.462 0.00 0.00 0.00 2.57
3626 4258 5.477637 AGACTTATATTTAGGGACGGAGAGC 59.522 44.000 0.00 0.00 0.00 4.09
3746 4401 2.363683 AGTAGTACTCCCTCCGTTTCG 58.636 52.381 0.00 0.00 0.00 3.46
3788 4443 8.682710 GCAACCTGGTCATTTAACATAAATCTA 58.317 33.333 0.00 0.00 0.00 1.98
3873 4528 1.462616 TTCTTGTGTGCTGTGCAGTT 58.537 45.000 0.00 0.00 40.08 3.16
3875 4530 2.565210 TTTTCTTGTGTGCTGTGCAG 57.435 45.000 0.00 0.00 40.08 4.41
3908 4563 3.378742 ACTGTCATGTTTTTGTGGCGTTA 59.621 39.130 0.00 0.00 0.00 3.18
4077 4733 3.371898 GTGCTATTCTTTTTGCCCATTGC 59.628 43.478 0.00 0.00 41.77 3.56
4114 4770 5.693104 TGCAGTTCTTTGCTGATCATTTTTC 59.307 36.000 0.00 0.00 44.38 2.29
4146 4802 2.309613 TCATTTGCACAGCTTGGAACT 58.690 42.857 0.00 0.00 34.84 3.01
4204 4860 0.610232 GGAGGCCAGAAGCACAACAT 60.610 55.000 5.01 0.00 46.50 2.71
4227 4883 3.476552 CTTTCCTGCCAGAACACTACAA 58.523 45.455 0.00 0.00 0.00 2.41
4298 4954 2.125326 TATCGACTGCACCTCCGGG 61.125 63.158 0.00 0.00 38.88 5.73
4310 4966 7.010552 GGGATGCAGTATTTATGATGTATCGAC 59.989 40.741 0.00 0.00 36.14 4.20
4312 4968 6.019559 CGGGATGCAGTATTTATGATGTATCG 60.020 42.308 0.00 0.00 36.14 2.92
4363 5019 1.378531 AACAGCGTGAACTTGCTTCA 58.621 45.000 0.00 0.00 40.03 3.02
4413 5069 4.006780 TGAGATGTAACACACACTGCAT 57.993 40.909 0.00 0.00 40.86 3.96
4418 5074 4.991056 AGTGACATGAGATGTAACACACAC 59.009 41.667 0.00 0.00 45.40 3.82
4419 5075 4.990426 CAGTGACATGAGATGTAACACACA 59.010 41.667 0.00 0.00 45.40 3.72
4425 5081 4.541973 ACAGCAGTGACATGAGATGTAA 57.458 40.909 0.00 0.00 45.03 2.41
4429 5085 5.494724 ACATTAACAGCAGTGACATGAGAT 58.505 37.500 0.00 0.00 0.00 2.75
4491 5147 6.874664 GCTATAAGGGCTATTGGAGAAAGTAC 59.125 42.308 0.00 0.00 0.00 2.73
4503 5159 5.491982 GCAATACACAGCTATAAGGGCTAT 58.508 41.667 0.00 0.00 38.03 2.97
4508 5164 6.262944 TGATTTGGCAATACACAGCTATAAGG 59.737 38.462 0.00 0.00 0.00 2.69
4512 5168 5.450965 GCTTGATTTGGCAATACACAGCTAT 60.451 40.000 19.82 5.18 0.00 2.97
4515 5171 2.925563 GCTTGATTTGGCAATACACAGC 59.074 45.455 0.00 11.55 0.00 4.40
4516 5172 3.056678 TGGCTTGATTTGGCAATACACAG 60.057 43.478 0.00 6.43 37.05 3.66
4517 5173 2.896044 TGGCTTGATTTGGCAATACACA 59.104 40.909 0.00 0.00 37.05 3.72
4518 5174 3.591196 TGGCTTGATTTGGCAATACAC 57.409 42.857 0.00 0.00 37.05 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.