Multiple sequence alignment - TraesCS5B01G142900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G142900 chr5B 100.000 7532 0 0 1 7532 269972362 269979893 0.000000e+00 13910.0
1 TraesCS5B01G142900 chr5B 87.500 456 29 11 296 725 571390175 571390628 1.130000e-137 501.0
2 TraesCS5B01G142900 chr5B 87.984 258 24 5 2971 3223 446041940 446042195 1.590000e-76 298.0
3 TraesCS5B01G142900 chr5B 97.561 123 1 1 3254 3376 269975339 269975459 7.660000e-50 209.0
4 TraesCS5B01G142900 chr5B 90.833 120 10 1 7035 7153 366049554 366049435 7.820000e-35 159.0
5 TraesCS5B01G142900 chr5A 94.427 2925 118 16 4647 7532 319229887 319232805 0.000000e+00 4457.0
6 TraesCS5B01G142900 chr5A 94.937 1264 40 9 3377 4625 319228641 319229895 0.000000e+00 1958.0
7 TraesCS5B01G142900 chr5A 89.133 1049 60 26 1063 2070 319226816 319227851 0.000000e+00 1256.0
8 TraesCS5B01G142900 chr5A 86.683 413 36 11 2389 2797 319228158 319228555 2.490000e-119 440.0
9 TraesCS5B01G142900 chr5A 90.476 315 17 7 722 1027 319226343 319226653 3.270000e-108 403.0
10 TraesCS5B01G142900 chr5A 96.957 230 7 0 2159 2388 319227850 319228079 3.300000e-103 387.0
11 TraesCS5B01G142900 chr5A 97.778 90 2 0 2881 2970 319228556 319228645 1.010000e-33 156.0
12 TraesCS5B01G142900 chr5A 94.898 98 5 0 4385 4482 593472227 593472324 3.640000e-33 154.0
13 TraesCS5B01G142900 chr5A 96.667 90 3 0 2789 2878 560883483 560883394 4.710000e-32 150.0
14 TraesCS5B01G142900 chr5D 94.194 2928 121 9 4646 7532 234847998 234845079 0.000000e+00 4420.0
15 TraesCS5B01G142900 chr5D 95.501 1267 35 12 3377 4625 234849251 234847989 0.000000e+00 2004.0
16 TraesCS5B01G142900 chr5D 91.595 1047 65 12 1039 2068 234851015 234849975 0.000000e+00 1424.0
17 TraesCS5B01G142900 chr5D 94.720 644 25 8 2157 2796 234849977 234849339 0.000000e+00 992.0
18 TraesCS5B01G142900 chr5D 91.693 313 18 5 722 1027 234851470 234851159 1.940000e-115 427.0
19 TraesCS5B01G142900 chr5D 97.561 123 3 0 3254 3376 288254556 288254434 2.130000e-50 211.0
20 TraesCS5B01G142900 chr5D 94.286 105 6 0 4385 4489 558970435 558970539 2.170000e-35 161.0
21 TraesCS5B01G142900 chr5D 90.517 116 10 1 7031 7146 377988043 377988157 1.310000e-32 152.0
22 TraesCS5B01G142900 chr5D 95.699 93 3 1 2880 2971 234849338 234849246 1.690000e-31 148.0
23 TraesCS5B01G142900 chr5D 94.681 94 3 2 2793 2884 526559651 526559558 2.190000e-30 145.0
24 TraesCS5B01G142900 chr1B 90.559 752 40 12 1 722 660922004 660921254 0.000000e+00 966.0
25 TraesCS5B01G142900 chr1B 89.319 749 48 13 3 722 359123497 359122752 0.000000e+00 911.0
26 TraesCS5B01G142900 chr1B 88.801 759 43 13 3 720 91241137 91240380 0.000000e+00 893.0
27 TraesCS5B01G142900 chr1B 88.771 757 45 16 3 722 328750940 328750187 0.000000e+00 891.0
28 TraesCS5B01G142900 chr1B 88.385 749 51 16 3 722 59006019 59006760 0.000000e+00 869.0
29 TraesCS5B01G142900 chr1B 98.246 285 5 0 2970 3254 217720755 217721039 4.060000e-137 499.0
30 TraesCS5B01G142900 chr1B 97.561 123 1 1 3254 3376 217720763 217720883 7.660000e-50 209.0
31 TraesCS5B01G142900 chr1B 96.774 124 2 1 3254 3377 217721879 217722000 9.910000e-49 206.0
32 TraesCS5B01G142900 chr2B 90.541 740 40 12 3 714 773124105 773123368 0.000000e+00 952.0
33 TraesCS5B01G142900 chr2B 86.859 761 61 15 3 726 5636202 5635444 0.000000e+00 815.0
34 TraesCS5B01G142900 chr2B 100.000 30 0 0 2084 2113 90781622 90781593 1.000000e-03 56.5
35 TraesCS5B01G142900 chr7B 90.067 745 47 10 3 722 621865742 621865000 0.000000e+00 941.0
36 TraesCS5B01G142900 chr7B 88.701 770 45 19 3 733 639029053 639028287 0.000000e+00 902.0
37 TraesCS5B01G142900 chr7B 88.977 753 46 18 3 722 451201021 451201769 0.000000e+00 896.0
38 TraesCS5B01G142900 chr7B 88.243 757 47 16 3 722 4970063 4969312 0.000000e+00 867.0
39 TraesCS5B01G142900 chr7B 91.635 263 14 6 2967 3222 5271069 5270808 2.580000e-94 357.0
40 TraesCS5B01G142900 chr7B 96.094 128 4 1 3254 3381 5269742 5269616 2.750000e-49 207.0
41 TraesCS5B01G142900 chr7B 93.396 106 7 0 4384 4489 237489311 237489416 2.810000e-34 158.0
42 TraesCS5B01G142900 chr7B 96.809 94 2 1 2786 2878 740996146 740996239 1.010000e-33 156.0
43 TraesCS5B01G142900 chr6B 89.960 747 42 10 3 719 668109014 668109757 0.000000e+00 933.0
44 TraesCS5B01G142900 chr6B 86.150 787 40 23 3 724 701652919 701653701 0.000000e+00 785.0
45 TraesCS5B01G142900 chr6B 92.218 257 15 4 2971 3223 520237952 520237697 7.190000e-95 359.0
46 TraesCS5B01G142900 chr6B 96.774 124 2 1 3254 3377 390631926 390632047 9.910000e-49 206.0
47 TraesCS5B01G142900 chr6B 100.000 29 0 0 2082 2110 563996865 563996837 4.000000e-03 54.7
48 TraesCS5B01G142900 chr4B 89.328 759 43 15 1 722 409683358 409684115 0.000000e+00 918.0
49 TraesCS5B01G142900 chr4B 88.431 752 48 17 3 722 532448144 532447400 0.000000e+00 870.0
50 TraesCS5B01G142900 chr4B 86.089 762 62 18 3 722 387004332 387003573 0.000000e+00 780.0
51 TraesCS5B01G142900 chr4B 90.734 259 15 6 2971 3223 101204385 101204640 3.370000e-88 337.0
52 TraesCS5B01G142900 chr4B 92.233 206 10 4 2971 3172 179301501 179301298 3.440000e-73 287.0
53 TraesCS5B01G142900 chr4B 92.233 103 8 0 4382 4484 116483437 116483335 6.090000e-31 147.0
54 TraesCS5B01G142900 chr3B 89.319 749 44 14 3 722 542031621 542032362 0.000000e+00 907.0
55 TraesCS5B01G142900 chr3B 96.175 183 6 1 2971 3152 545200370 545200188 1.590000e-76 298.0
56 TraesCS5B01G142900 chr3B 96.748 123 4 0 3254 3376 119075520 119075398 9.910000e-49 206.0
57 TraesCS5B01G142900 chr3B 96.774 93 3 0 2786 2878 65214149 65214057 1.010000e-33 156.0
58 TraesCS5B01G142900 chr3B 93.333 105 7 0 4377 4481 256253815 256253711 1.010000e-33 156.0
59 TraesCS5B01G142900 chr3B 85.811 148 17 3 7003 7146 815372772 815372919 3.640000e-33 154.0
60 TraesCS5B01G142900 chr3B 93.478 46 3 0 2082 2127 598006788 598006743 1.360000e-07 69.4
61 TraesCS5B01G142900 chr6A 93.774 257 12 3 2971 3223 268986882 268986626 4.260000e-102 383.0
62 TraesCS5B01G142900 chr6A 95.699 93 4 0 2786 2878 508000853 508000945 4.710000e-32 150.0
63 TraesCS5B01G142900 chr6A 100.000 28 0 0 2087 2114 101874222 101874249 1.400000e-02 52.8
64 TraesCS5B01G142900 chr7D 93.191 235 13 2 2970 3204 437413935 437413704 7.240000e-90 342.0
65 TraesCS5B01G142900 chr7D 90.741 108 10 0 4384 4491 548202140 548202033 2.190000e-30 145.0
66 TraesCS5B01G142900 chr1A 96.748 123 4 0 3254 3376 380966103 380965981 9.910000e-49 206.0
67 TraesCS5B01G142900 chr1A 89.147 129 13 1 7031 7159 354626678 354626805 7.820000e-35 159.0
68 TraesCS5B01G142900 chr1A 96.667 90 3 0 2789 2878 527084021 527083932 4.710000e-32 150.0
69 TraesCS5B01G142900 chr6D 96.748 123 2 1 3254 3376 214552199 214552079 3.560000e-48 204.0
70 TraesCS5B01G142900 chr6D 88.571 140 15 1 7014 7152 305362218 305362079 1.300000e-37 169.0
71 TraesCS5B01G142900 chr6D 94.792 96 5 0 4381 4476 178131393 178131298 4.710000e-32 150.0
72 TraesCS5B01G142900 chr6D 93.878 98 6 0 7049 7146 145462521 145462618 1.690000e-31 148.0
73 TraesCS5B01G142900 chr6D 91.429 105 9 0 7049 7153 467802374 467802270 2.190000e-30 145.0
74 TraesCS5B01G142900 chr6D 91.346 104 9 0 7049 7152 21052074 21051971 7.880000e-30 143.0
75 TraesCS5B01G142900 chr6D 89.474 114 11 1 7034 7146 124663259 124663372 7.880000e-30 143.0
76 TraesCS5B01G142900 chr6D 92.929 99 5 1 4385 4481 292393182 292393280 7.880000e-30 143.0
77 TraesCS5B01G142900 chr6D 89.908 109 11 0 7038 7146 48455033 48455141 2.830000e-29 141.0
78 TraesCS5B01G142900 chr6D 89.908 109 11 0 7038 7146 90112285 90112393 2.830000e-29 141.0
79 TraesCS5B01G142900 chr6D 92.784 97 7 0 4385 4481 200398714 200398810 2.830000e-29 141.0
80 TraesCS5B01G142900 chr6D 92.784 97 7 0 4385 4481 382547415 382547319 2.830000e-29 141.0
81 TraesCS5B01G142900 chr6D 92.857 98 5 2 4385 4481 445729141 445729237 2.830000e-29 141.0
82 TraesCS5B01G142900 chr6D 89.908 109 11 0 7049 7157 454984482 454984374 2.830000e-29 141.0
83 TraesCS5B01G142900 chr6D 92.000 100 7 1 7053 7152 128093006 128092908 1.020000e-28 139.0
84 TraesCS5B01G142900 chr6D 89.908 109 10 1 7049 7157 141446433 141446540 1.020000e-28 139.0
85 TraesCS5B01G142900 chr6D 92.000 100 6 2 4385 4484 419276461 419276558 1.020000e-28 139.0
86 TraesCS5B01G142900 chr6D 87.097 124 13 3 7031 7153 298453610 298453731 3.670000e-28 137.0
87 TraesCS5B01G142900 chr6D 86.508 126 15 2 7031 7156 408900413 408900290 3.670000e-28 137.0
88 TraesCS5B01G142900 chr6D 92.553 94 7 0 4378 4471 291383346 291383439 1.320000e-27 135.0
89 TraesCS5B01G142900 chr6D 100.000 30 0 0 2085 2114 36551791 36551820 1.000000e-03 56.5
90 TraesCS5B01G142900 chr6D 90.476 42 4 0 7011 7052 170089575 170089616 1.000000e-03 56.5
91 TraesCS5B01G142900 chr3D 92.105 114 8 1 7034 7146 400274680 400274793 7.820000e-35 159.0
92 TraesCS5B01G142900 chr3D 87.692 130 16 0 7014 7143 134949201 134949072 1.310000e-32 152.0
93 TraesCS5B01G142900 chr3D 89.344 122 12 1 7031 7152 187836428 187836308 1.310000e-32 152.0
94 TraesCS5B01G142900 chr3D 93.204 103 7 0 4382 4484 598895737 598895839 1.310000e-32 152.0
95 TraesCS5B01G142900 chr3D 88.710 124 12 2 7034 7156 540564865 540564743 4.710000e-32 150.0
96 TraesCS5B01G142900 chr7A 90.833 120 7 4 4385 4501 61815922 61816040 2.810000e-34 158.0
97 TraesCS5B01G142900 chr7A 86.014 143 14 3 7010 7146 52313521 52313663 1.690000e-31 148.0
98 TraesCS5B01G142900 chr7A 90.265 113 10 1 4370 4482 73807159 73807270 6.090000e-31 147.0
99 TraesCS5B01G142900 chr4D 93.396 106 7 0 7050 7155 36603106 36603211 2.810000e-34 158.0
100 TraesCS5B01G142900 chr4D 94.949 99 5 0 4383 4481 12354796 12354698 1.010000e-33 156.0
101 TraesCS5B01G142900 chr4D 94.059 101 6 0 4384 4484 93339454 93339354 3.640000e-33 154.0
102 TraesCS5B01G142900 chr4D 95.789 95 4 0 2792 2886 252173791 252173697 3.640000e-33 154.0
103 TraesCS5B01G142900 chr4D 93.939 99 6 0 4385 4483 50462599 50462501 4.710000e-32 150.0
104 TraesCS5B01G142900 chr4D 88.430 121 13 1 7034 7153 34661569 34661689 2.190000e-30 145.0
105 TraesCS5B01G142900 chr4D 91.346 104 8 1 4385 4488 482704210 482704108 2.830000e-29 141.0
106 TraesCS5B01G142900 chr4D 88.496 113 13 0 7034 7146 374602299 374602411 3.670000e-28 137.0
107 TraesCS5B01G142900 chr2A 96.774 93 3 0 2786 2878 65084807 65084899 1.010000e-33 156.0
108 TraesCS5B01G142900 chr1D 94.898 98 5 0 7049 7146 132857773 132857676 3.640000e-33 154.0
109 TraesCS5B01G142900 chr1D 92.308 104 8 0 7049 7152 463382008 463381905 1.690000e-31 148.0
110 TraesCS5B01G142900 chr1D 89.474 114 10 1 4369 4482 135931061 135930950 7.880000e-30 143.0
111 TraesCS5B01G142900 chr1D 85.612 139 16 3 7015 7152 257361637 257361502 7.880000e-30 143.0
112 TraesCS5B01G142900 chr1D 92.857 98 7 0 4385 4482 415425038 415424941 7.880000e-30 143.0
113 TraesCS5B01G142900 chr1D 88.793 116 12 1 7031 7146 324412269 324412383 2.830000e-29 141.0
114 TraesCS5B01G142900 chr1D 85.000 140 18 3 7016 7152 365717055 365716916 1.020000e-28 139.0
115 TraesCS5B01G142900 chr1D 87.603 121 13 2 7033 7152 463876321 463876202 1.020000e-28 139.0
116 TraesCS5B01G142900 chr1D 90.385 104 10 0 4385 4488 272547650 272547547 3.670000e-28 137.0
117 TraesCS5B01G142900 chr1D 86.957 115 15 0 4367 4481 323640221 323640335 6.130000e-26 130.0
118 TraesCS5B01G142900 chr2D 94.000 100 6 0 4382 4481 445894881 445894980 1.310000e-32 152.0
119 TraesCS5B01G142900 chr2D 88.235 51 4 2 4230 4279 635853184 635853135 8.160000e-05 60.2
120 TraesCS5B01G142900 chr3A 95.699 93 4 0 2786 2878 657439689 657439781 4.710000e-32 150.0
121 TraesCS5B01G142900 chr4A 89.655 116 9 3 4369 4484 492942351 492942239 2.190000e-30 145.0
122 TraesCS5B01G142900 chrUn 90.654 107 8 2 4384 4489 362465900 362465795 2.830000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G142900 chr5B 269972362 269979893 7531 False 13910.000000 13910 100.000000 1 7532 1 chr5B.!!$F1 7531
1 TraesCS5B01G142900 chr5A 319226343 319232805 6462 False 1293.857143 4457 92.913000 722 7532 7 chr5A.!!$F2 6810
2 TraesCS5B01G142900 chr5D 234845079 234851470 6391 True 1569.166667 4420 93.900333 722 7532 6 chr5D.!!$R3 6810
3 TraesCS5B01G142900 chr1B 660921254 660922004 750 True 966.000000 966 90.559000 1 722 1 chr1B.!!$R4 721
4 TraesCS5B01G142900 chr1B 359122752 359123497 745 True 911.000000 911 89.319000 3 722 1 chr1B.!!$R3 719
5 TraesCS5B01G142900 chr1B 91240380 91241137 757 True 893.000000 893 88.801000 3 720 1 chr1B.!!$R1 717
6 TraesCS5B01G142900 chr1B 328750187 328750940 753 True 891.000000 891 88.771000 3 722 1 chr1B.!!$R2 719
7 TraesCS5B01G142900 chr1B 59006019 59006760 741 False 869.000000 869 88.385000 3 722 1 chr1B.!!$F1 719
8 TraesCS5B01G142900 chr1B 217720755 217722000 1245 False 304.666667 499 97.527000 2970 3377 3 chr1B.!!$F2 407
9 TraesCS5B01G142900 chr2B 773123368 773124105 737 True 952.000000 952 90.541000 3 714 1 chr2B.!!$R3 711
10 TraesCS5B01G142900 chr2B 5635444 5636202 758 True 815.000000 815 86.859000 3 726 1 chr2B.!!$R1 723
11 TraesCS5B01G142900 chr7B 621865000 621865742 742 True 941.000000 941 90.067000 3 722 1 chr7B.!!$R2 719
12 TraesCS5B01G142900 chr7B 639028287 639029053 766 True 902.000000 902 88.701000 3 733 1 chr7B.!!$R3 730
13 TraesCS5B01G142900 chr7B 451201021 451201769 748 False 896.000000 896 88.977000 3 722 1 chr7B.!!$F2 719
14 TraesCS5B01G142900 chr7B 4969312 4970063 751 True 867.000000 867 88.243000 3 722 1 chr7B.!!$R1 719
15 TraesCS5B01G142900 chr7B 5269616 5271069 1453 True 282.000000 357 93.864500 2967 3381 2 chr7B.!!$R4 414
16 TraesCS5B01G142900 chr6B 668109014 668109757 743 False 933.000000 933 89.960000 3 719 1 chr6B.!!$F2 716
17 TraesCS5B01G142900 chr6B 701652919 701653701 782 False 785.000000 785 86.150000 3 724 1 chr6B.!!$F3 721
18 TraesCS5B01G142900 chr4B 409683358 409684115 757 False 918.000000 918 89.328000 1 722 1 chr4B.!!$F2 721
19 TraesCS5B01G142900 chr4B 532447400 532448144 744 True 870.000000 870 88.431000 3 722 1 chr4B.!!$R4 719
20 TraesCS5B01G142900 chr4B 387003573 387004332 759 True 780.000000 780 86.089000 3 722 1 chr4B.!!$R3 719
21 TraesCS5B01G142900 chr3B 542031621 542032362 741 False 907.000000 907 89.319000 3 722 1 chr3B.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 474 0.178873 TCCCCCTTGCTACACCTCTT 60.179 55.0 0.00 0.0 0.00 2.85 F
1035 1158 0.035630 GGCCAATCAGTCAGCAGTCT 60.036 55.0 0.00 0.0 0.00 3.24 F
1888 2194 0.038166 GATTTGTGGTGCTCAGGGGA 59.962 55.0 0.00 0.0 0.00 4.81 F
2129 2438 0.251297 TTGGGACGAAGGGAGTACGA 60.251 55.0 0.00 0.0 0.00 3.43 F
2146 2455 0.323629 CGACTTAAGGGCCTGTTCCA 59.676 55.0 6.92 0.0 0.00 3.53 F
2155 2464 0.389025 GGCCTGTTCCAACCAACTTG 59.611 55.0 0.00 0.0 0.00 3.16 F
4233 5799 0.179100 CTCAATGGTCGCATCGAGGT 60.179 55.0 0.00 0.0 36.23 3.85 F
4373 5939 0.316204 CAGGGCTGCTTCCAGTTTTG 59.684 55.0 0.00 0.0 41.26 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1871 2177 0.251297 CATCCCCTGAGCACCACAAA 60.251 55.000 0.00 0.00 0.00 2.83 R
2127 2436 0.323629 TGGAACAGGCCCTTAAGTCG 59.676 55.000 0.00 0.00 0.00 4.18 R
3434 4995 1.060713 CAGACTACGACAAAGGCGTG 58.939 55.000 8.35 0.99 42.62 5.34 R
4122 5687 0.098200 CAGCATCTGCAATGGTGTCG 59.902 55.000 22.17 7.31 45.16 4.35 R
4233 5799 5.295787 GTGTGAACTCTTTGTGGTTGTATCA 59.704 40.000 0.00 0.00 0.00 2.15 R
4373 5939 6.462628 GGGACAGAGGGAGTACAACATATAAC 60.463 46.154 0.00 0.00 0.00 1.89 R
6379 7975 1.067516 ACGCTGTTTGCTGCTTCAAAT 59.932 42.857 0.00 0.00 38.12 2.32 R
6547 8143 1.289160 TGTGCTTCTGGCCTCCTAAT 58.711 50.000 3.32 0.00 40.92 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.590487 GTCGAGTTTCGGCCATCA 57.410 55.556 2.24 0.00 38.79 3.07
185 210 4.579384 CCTGGTGGGTTGGTGCGT 62.579 66.667 0.00 0.00 0.00 5.24
254 327 4.305956 CCTTGGGGGCAAGGCACT 62.306 66.667 0.00 0.00 44.30 4.40
329 409 4.202901 CCCTGGGTCCCTATATAAAGAGGA 60.203 50.000 10.00 0.00 36.05 3.71
370 455 2.282462 CACTTGGCGCCTCCCTTT 60.282 61.111 29.70 2.61 0.00 3.11
389 474 0.178873 TCCCCCTTGCTACACCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
396 481 0.413832 TGCTACACCTCTTCCTCCCT 59.586 55.000 0.00 0.00 0.00 4.20
444 529 2.353958 CTGCTGCATCCACCACCT 59.646 61.111 1.31 0.00 0.00 4.00
454 539 2.717044 CCACCACCTCGCCGTCATA 61.717 63.158 0.00 0.00 0.00 2.15
481 566 3.708631 TGGATCTTCATCAACCTCTCCTC 59.291 47.826 0.00 0.00 0.00 3.71
595 681 2.128035 GATTTGGATCACGGCGAGTAG 58.872 52.381 16.62 0.00 32.33 2.57
642 752 3.643792 GGGTATGTAGATGCACTCCTCTT 59.356 47.826 0.00 0.00 0.00 2.85
644 754 5.304614 GGGTATGTAGATGCACTCCTCTTTA 59.695 44.000 0.00 0.00 0.00 1.85
651 763 3.678056 TGCACTCCTCTTTATCGTTGT 57.322 42.857 0.00 0.00 0.00 3.32
750 863 1.065551 GTGCCGTCAAAAGAAACAGCT 59.934 47.619 0.00 0.00 0.00 4.24
754 867 3.550842 GCCGTCAAAAGAAACAGCTCAAT 60.551 43.478 0.00 0.00 0.00 2.57
783 896 6.295249 TCCATGTTCACACACTTTCTCATAA 58.705 36.000 0.00 0.00 35.03 1.90
793 906 8.233190 CACACACTTTCTCATAATTTTCTCTCC 58.767 37.037 0.00 0.00 0.00 3.71
796 909 9.354673 ACACTTTCTCATAATTTTCTCTCCAAA 57.645 29.630 0.00 0.00 0.00 3.28
936 1054 2.841266 TCGAGAGAGAAGAAGAGGGAGA 59.159 50.000 0.00 0.00 34.84 3.71
937 1055 3.458118 TCGAGAGAGAAGAAGAGGGAGAT 59.542 47.826 0.00 0.00 34.84 2.75
961 1079 1.368950 GCTGCTCACTCCACAGTCA 59.631 57.895 0.00 0.00 33.87 3.41
962 1080 0.669932 GCTGCTCACTCCACAGTCAG 60.670 60.000 0.00 0.00 33.87 3.51
985 1103 3.191162 CAGTCTCCACTCTCAAGTCTCAG 59.809 52.174 0.00 0.00 31.71 3.35
1029 1152 2.758089 GCGCTGGCCAATCAGTCAG 61.758 63.158 7.01 0.00 37.12 3.51
1030 1153 2.758089 CGCTGGCCAATCAGTCAGC 61.758 63.158 7.01 8.03 46.32 4.26
1031 1154 4.728409 CTGGCCAATCAGTCAGCA 57.272 55.556 7.01 0.00 0.00 4.41
1034 1157 0.321919 TGGCCAATCAGTCAGCAGTC 60.322 55.000 0.61 0.00 0.00 3.51
1035 1158 0.035630 GGCCAATCAGTCAGCAGTCT 60.036 55.000 0.00 0.00 0.00 3.24
1037 1160 2.011046 GCCAATCAGTCAGCAGTCTCC 61.011 57.143 0.00 0.00 0.00 3.71
1050 1311 2.282251 TCTCCACGACGAGCAGGT 60.282 61.111 0.00 0.00 0.00 4.00
1214 1484 3.790437 CCTCGGCCTCCACAGCAT 61.790 66.667 0.00 0.00 0.00 3.79
1359 1642 2.106683 CCGTGAGATTTCCCGCACC 61.107 63.158 0.00 0.00 34.09 5.01
1360 1643 1.375396 CGTGAGATTTCCCGCACCA 60.375 57.895 0.00 0.00 34.09 4.17
1361 1644 0.744414 CGTGAGATTTCCCGCACCAT 60.744 55.000 0.00 0.00 34.09 3.55
1363 1646 0.327924 TGAGATTTCCCGCACCATGT 59.672 50.000 0.00 0.00 0.00 3.21
1366 1649 2.231235 GAGATTTCCCGCACCATGTTTT 59.769 45.455 0.00 0.00 0.00 2.43
1367 1650 2.029110 AGATTTCCCGCACCATGTTTTG 60.029 45.455 0.00 0.00 0.00 2.44
1368 1651 1.403814 TTTCCCGCACCATGTTTTGA 58.596 45.000 0.00 0.00 0.00 2.69
1369 1652 0.958091 TTCCCGCACCATGTTTTGAG 59.042 50.000 0.00 0.00 0.00 3.02
1376 1659 2.028748 GCACCATGTTTTGAGCCTCATT 60.029 45.455 0.00 0.00 0.00 2.57
1377 1660 3.555586 GCACCATGTTTTGAGCCTCATTT 60.556 43.478 0.00 0.00 0.00 2.32
1438 1726 3.978855 CCGAATTTTCTGACGGGTTTTTC 59.021 43.478 0.00 0.00 41.41 2.29
1455 1743 1.999071 TTCCTGTGCGGTGTTTGTGC 61.999 55.000 0.00 0.00 0.00 4.57
1497 1785 1.200948 GGGAAGCACAAGCATCTTGAC 59.799 52.381 12.89 5.23 45.49 3.18
1501 1789 1.503542 CACAAGCATCTTGACGGGC 59.496 57.895 12.89 0.00 0.00 6.13
1503 1791 2.436646 AAGCATCTTGACGGGCCG 60.437 61.111 27.06 27.06 0.00 6.13
1504 1792 3.976701 AAGCATCTTGACGGGCCGG 62.977 63.158 31.78 12.61 0.00 6.13
1549 1842 5.121105 AGGTACAATGTCCTAAATTACGCC 58.879 41.667 0.00 0.00 31.66 5.68
1630 1923 4.770795 AGATTTTCTGAGTACCATTCCCG 58.229 43.478 0.00 0.00 0.00 5.14
1783 2084 2.125106 CGCCACCTACCTGCTTCC 60.125 66.667 0.00 0.00 0.00 3.46
1790 2091 1.008938 ACCTACCTGCTTCCTGAGGAT 59.991 52.381 0.04 0.00 33.16 3.24
1795 2096 1.413662 CCTGCTTCCTGAGGATAGGGA 60.414 57.143 15.39 5.28 38.42 4.20
1871 2177 7.238305 TCTGATGATGTTATGGGATTACAGGAT 59.762 37.037 0.00 0.00 0.00 3.24
1888 2194 0.038166 GATTTGTGGTGCTCAGGGGA 59.962 55.000 0.00 0.00 0.00 4.81
1932 2238 4.771577 TGTTGTGCAAATCCCAAGTGATAT 59.228 37.500 0.00 0.00 0.00 1.63
1933 2239 5.948758 TGTTGTGCAAATCCCAAGTGATATA 59.051 36.000 0.00 0.00 0.00 0.86
1934 2240 6.127758 TGTTGTGCAAATCCCAAGTGATATAC 60.128 38.462 0.00 0.00 0.00 1.47
1940 2246 7.125507 TGCAAATCCCAAGTGATATACCAAAAT 59.874 33.333 0.00 0.00 0.00 1.82
2005 2314 6.690194 AGTCAAATGAGTCATCTATTTGGC 57.310 37.500 5.98 9.53 43.23 4.52
2035 2344 4.100808 TCTGCCAAATTAGCTTTTGTTGGT 59.899 37.500 15.46 0.00 40.73 3.67
2043 2352 2.355197 AGCTTTTGTTGGTTTGGTTGC 58.645 42.857 0.00 0.00 0.00 4.17
2073 2382 9.673454 AATCATTACGGTTTTAGTTCAAAGTTC 57.327 29.630 0.00 0.00 0.00 3.01
2074 2383 8.211116 TCATTACGGTTTTAGTTCAAAGTTCA 57.789 30.769 0.00 0.00 0.00 3.18
2075 2384 8.675504 TCATTACGGTTTTAGTTCAAAGTTCAA 58.324 29.630 0.00 0.00 0.00 2.69
2076 2385 8.739461 CATTACGGTTTTAGTTCAAAGTTCAAC 58.261 33.333 0.00 0.00 0.00 3.18
2077 2386 6.505044 ACGGTTTTAGTTCAAAGTTCAACT 57.495 33.333 5.69 5.69 36.75 3.16
2078 2387 6.916440 ACGGTTTTAGTTCAAAGTTCAACTT 58.084 32.000 0.00 0.00 40.80 2.66
2098 2407 9.712305 TCAACTTTGAAATTTGAACTAAAACCA 57.288 25.926 8.05 0.00 33.55 3.67
2099 2408 9.753669 CAACTTTGAAATTTGAACTAAAACCAC 57.246 29.630 2.24 0.00 0.00 4.16
2100 2409 8.180317 ACTTTGAAATTTGAACTAAAACCACG 57.820 30.769 0.00 0.00 0.00 4.94
2101 2410 8.030106 ACTTTGAAATTTGAACTAAAACCACGA 58.970 29.630 0.00 0.00 0.00 4.35
2102 2411 8.934507 TTTGAAATTTGAACTAAAACCACGAT 57.065 26.923 0.00 0.00 0.00 3.73
2105 2414 9.672086 TGAAATTTGAACTAAAACCACGATAAG 57.328 29.630 0.00 0.00 0.00 1.73
2106 2415 9.673454 GAAATTTGAACTAAAACCACGATAAGT 57.327 29.630 0.00 0.00 0.00 2.24
2113 2422 9.550811 GAACTAAAACCACGATAAGTATTTTGG 57.449 33.333 0.00 0.00 36.03 3.28
2114 2423 8.047413 ACTAAAACCACGATAAGTATTTTGGG 57.953 34.615 0.00 0.00 35.14 4.12
2115 2424 7.884354 ACTAAAACCACGATAAGTATTTTGGGA 59.116 33.333 0.00 0.00 35.14 4.37
2116 2425 6.505044 AAACCACGATAAGTATTTTGGGAC 57.495 37.500 0.00 0.00 0.00 4.46
2117 2426 4.186159 ACCACGATAAGTATTTTGGGACG 58.814 43.478 0.00 0.00 0.00 4.79
2118 2427 4.081531 ACCACGATAAGTATTTTGGGACGA 60.082 41.667 0.00 0.00 0.00 4.20
2119 2428 4.871557 CCACGATAAGTATTTTGGGACGAA 59.128 41.667 0.00 0.00 0.00 3.85
2120 2429 5.006358 CCACGATAAGTATTTTGGGACGAAG 59.994 44.000 0.00 0.00 0.00 3.79
2121 2430 5.006358 CACGATAAGTATTTTGGGACGAAGG 59.994 44.000 0.00 0.00 0.00 3.46
2122 2431 4.510340 CGATAAGTATTTTGGGACGAAGGG 59.490 45.833 0.00 0.00 0.00 3.95
2123 2432 5.677567 GATAAGTATTTTGGGACGAAGGGA 58.322 41.667 0.00 0.00 0.00 4.20
2124 2433 3.629142 AGTATTTTGGGACGAAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2125 2434 2.910977 AGTATTTTGGGACGAAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2126 2435 4.098894 AGTATTTTGGGACGAAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2127 2436 2.845363 TTTTGGGACGAAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2128 2437 0.604578 TTTGGGACGAAGGGAGTACG 59.395 55.000 0.00 0.00 0.00 3.67
2129 2438 0.251297 TTGGGACGAAGGGAGTACGA 60.251 55.000 0.00 0.00 0.00 3.43
2130 2439 0.962356 TGGGACGAAGGGAGTACGAC 60.962 60.000 0.00 0.00 0.00 4.34
2131 2440 0.679321 GGGACGAAGGGAGTACGACT 60.679 60.000 0.00 0.00 0.00 4.18
2132 2441 1.172175 GGACGAAGGGAGTACGACTT 58.828 55.000 0.00 0.38 0.00 3.01
2133 2442 2.359900 GGACGAAGGGAGTACGACTTA 58.640 52.381 0.00 0.00 0.00 2.24
2134 2443 2.749621 GGACGAAGGGAGTACGACTTAA 59.250 50.000 0.00 0.00 0.00 1.85
2135 2444 3.181502 GGACGAAGGGAGTACGACTTAAG 60.182 52.174 0.00 0.00 0.00 1.85
2136 2445 2.751806 ACGAAGGGAGTACGACTTAAGG 59.248 50.000 7.53 0.00 0.00 2.69
2137 2446 2.098770 CGAAGGGAGTACGACTTAAGGG 59.901 54.545 7.53 0.72 0.00 3.95
2138 2447 1.482954 AGGGAGTACGACTTAAGGGC 58.517 55.000 7.53 0.00 0.00 5.19
2139 2448 0.463204 GGGAGTACGACTTAAGGGCC 59.537 60.000 7.53 0.00 0.00 5.80
2140 2449 1.482954 GGAGTACGACTTAAGGGCCT 58.517 55.000 0.00 0.00 0.00 5.19
2141 2450 1.136500 GGAGTACGACTTAAGGGCCTG 59.864 57.143 6.92 0.00 0.00 4.85
2142 2451 1.823610 GAGTACGACTTAAGGGCCTGT 59.176 52.381 6.92 0.00 0.00 4.00
2143 2452 2.233186 GAGTACGACTTAAGGGCCTGTT 59.767 50.000 6.92 0.00 0.00 3.16
2144 2453 2.233186 AGTACGACTTAAGGGCCTGTTC 59.767 50.000 6.92 0.00 0.00 3.18
2145 2454 0.323957 ACGACTTAAGGGCCTGTTCC 59.676 55.000 6.92 0.00 0.00 3.62
2146 2455 0.323629 CGACTTAAGGGCCTGTTCCA 59.676 55.000 6.92 0.00 0.00 3.53
2147 2456 1.271163 CGACTTAAGGGCCTGTTCCAA 60.271 52.381 6.92 0.00 0.00 3.53
2148 2457 2.160205 GACTTAAGGGCCTGTTCCAAC 58.840 52.381 6.92 0.00 0.00 3.77
2149 2458 1.203013 ACTTAAGGGCCTGTTCCAACC 60.203 52.381 6.92 0.00 0.00 3.77
2150 2459 0.854218 TTAAGGGCCTGTTCCAACCA 59.146 50.000 6.92 0.00 0.00 3.67
2151 2460 0.854218 TAAGGGCCTGTTCCAACCAA 59.146 50.000 6.92 0.00 0.00 3.67
2152 2461 0.759060 AAGGGCCTGTTCCAACCAAC 60.759 55.000 6.92 0.00 0.00 3.77
2153 2462 1.152546 GGGCCTGTTCCAACCAACT 60.153 57.895 0.84 0.00 0.00 3.16
2154 2463 0.759060 GGGCCTGTTCCAACCAACTT 60.759 55.000 0.84 0.00 0.00 2.66
2155 2464 0.389025 GGCCTGTTCCAACCAACTTG 59.611 55.000 0.00 0.00 0.00 3.16
2156 2465 1.111277 GCCTGTTCCAACCAACTTGT 58.889 50.000 0.00 0.00 0.00 3.16
2157 2466 1.067060 GCCTGTTCCAACCAACTTGTC 59.933 52.381 0.00 0.00 0.00 3.18
2158 2467 2.374184 CCTGTTCCAACCAACTTGTCA 58.626 47.619 0.00 0.00 0.00 3.58
2200 2509 9.838339 TCTATTTGATGAGTAATCTCCTTTTCC 57.162 33.333 0.00 0.00 39.75 3.13
2407 2794 5.710513 ATATAATGCATGCCATCACGTTT 57.289 34.783 16.68 0.00 31.43 3.60
2425 2812 4.992951 ACGTTTGACTTGGATTAGTACACC 59.007 41.667 0.00 0.00 0.00 4.16
2433 2820 2.364324 TGGATTAGTACACCGCTCCATC 59.636 50.000 0.00 0.00 0.00 3.51
2493 2880 8.628280 TCTCATACACAGAGAAGATATCAACTG 58.372 37.037 5.32 10.35 39.07 3.16
2500 2887 6.127196 ACAGAGAAGATATCAACTGAAGGACC 60.127 42.308 18.21 0.00 37.79 4.46
2526 2913 5.988561 GTCATGGAGATCAATGGTAAGAGAC 59.011 44.000 0.00 0.00 0.00 3.36
2528 2915 6.156775 TCATGGAGATCAATGGTAAGAGACAA 59.843 38.462 0.00 0.00 0.00 3.18
2555 2944 6.418057 TCTTTTATCTGGTGTTGGCAAATT 57.582 33.333 0.00 0.00 0.00 1.82
2564 2953 4.407296 TGGTGTTGGCAAATTTTTAGGTCT 59.593 37.500 0.00 0.00 0.00 3.85
2570 2959 4.343526 TGGCAAATTTTTAGGTCTTCTGCA 59.656 37.500 0.00 0.00 0.00 4.41
2583 2972 4.320788 GGTCTTCTGCATTTCACTTTCCAG 60.321 45.833 0.00 0.00 0.00 3.86
2710 3100 1.344065 TGGGGTTGTACAGTCGACAT 58.656 50.000 19.50 8.00 0.00 3.06
2753 3143 7.652524 TGGTAAATGCCAAATGTATGTGTAT 57.347 32.000 0.00 0.00 35.25 2.29
2793 3183 6.550843 TCAGTGTGGCGTCAATAATAATTTG 58.449 36.000 0.00 0.00 0.00 2.32
2794 3184 6.150307 TCAGTGTGGCGTCAATAATAATTTGT 59.850 34.615 0.00 0.00 0.00 2.83
2795 3185 7.334671 TCAGTGTGGCGTCAATAATAATTTGTA 59.665 33.333 0.00 0.00 0.00 2.41
2796 3186 7.428183 CAGTGTGGCGTCAATAATAATTTGTAC 59.572 37.037 0.00 0.00 0.00 2.90
2797 3187 7.335924 AGTGTGGCGTCAATAATAATTTGTACT 59.664 33.333 0.00 0.00 0.00 2.73
2798 3188 7.638683 GTGTGGCGTCAATAATAATTTGTACTC 59.361 37.037 0.00 0.00 0.00 2.59
2799 3189 7.130269 GTGGCGTCAATAATAATTTGTACTCC 58.870 38.462 0.00 0.00 0.00 3.85
2800 3190 6.261381 TGGCGTCAATAATAATTTGTACTCCC 59.739 38.462 0.00 0.00 0.00 4.30
2801 3191 6.485648 GGCGTCAATAATAATTTGTACTCCCT 59.514 38.462 0.00 0.00 0.00 4.20
2802 3192 7.307811 GGCGTCAATAATAATTTGTACTCCCTC 60.308 40.741 0.00 0.00 0.00 4.30
2803 3193 7.307811 GCGTCAATAATAATTTGTACTCCCTCC 60.308 40.741 0.00 0.00 0.00 4.30
2804 3194 7.095774 CGTCAATAATAATTTGTACTCCCTCCG 60.096 40.741 0.00 0.00 0.00 4.63
2805 3195 7.713942 GTCAATAATAATTTGTACTCCCTCCGT 59.286 37.037 0.00 0.00 0.00 4.69
2806 3196 8.926374 TCAATAATAATTTGTACTCCCTCCGTA 58.074 33.333 0.00 0.00 0.00 4.02
2807 3197 9.550406 CAATAATAATTTGTACTCCCTCCGTAA 57.450 33.333 0.00 0.00 0.00 3.18
2809 3199 9.774413 ATAATAATTTGTACTCCCTCCGTAAAG 57.226 33.333 0.00 0.00 0.00 1.85
2810 3200 5.750352 AATTTGTACTCCCTCCGTAAAGA 57.250 39.130 0.00 0.00 0.00 2.52
2811 3201 5.750352 ATTTGTACTCCCTCCGTAAAGAA 57.250 39.130 0.00 0.00 0.00 2.52
2812 3202 5.549742 TTTGTACTCCCTCCGTAAAGAAA 57.450 39.130 0.00 0.00 0.00 2.52
2813 3203 5.750352 TTGTACTCCCTCCGTAAAGAAAT 57.250 39.130 0.00 0.00 0.00 2.17
2814 3204 6.855763 TTGTACTCCCTCCGTAAAGAAATA 57.144 37.500 0.00 0.00 0.00 1.40
2815 3205 7.427989 TTGTACTCCCTCCGTAAAGAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
2816 3206 8.537728 TTGTACTCCCTCCGTAAAGAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
2817 3207 8.537728 TGTACTCCCTCCGTAAAGAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
2818 3208 8.636213 TGTACTCCCTCCGTAAAGAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
2819 3209 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2820 3210 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2821 3211 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2822 3212 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2823 3213 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2824 3214 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2825 3215 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2826 3216 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2827 3217 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2828 3218 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2840 3230 9.953697 ATAAGAGCGTTTAGATCACTTAAGTAG 57.046 33.333 8.04 3.38 37.82 2.57
2841 3231 7.393841 AGAGCGTTTAGATCACTTAAGTAGT 57.606 36.000 8.04 0.00 37.82 2.73
2874 3264 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
2875 3265 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
2876 3266 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
2877 3267 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
2878 3268 9.757227 CTCTTATATTTCTTTACAGAGGGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
2910 3300 4.398988 TGTGGGCTAAACATGCTCTAAATG 59.601 41.667 0.00 0.00 0.00 2.32
2950 3340 2.915869 ACAGACTGTCTTATTGGGGGA 58.084 47.619 7.77 0.00 0.00 4.81
2965 3355 2.526304 GGGGAAAGTTTTGCACCTTC 57.474 50.000 0.00 0.00 0.00 3.46
2966 3356 1.760029 GGGGAAAGTTTTGCACCTTCA 59.240 47.619 0.00 0.00 0.00 3.02
2967 3357 2.169561 GGGGAAAGTTTTGCACCTTCAA 59.830 45.455 0.00 0.00 0.00 2.69
2968 3358 3.369997 GGGGAAAGTTTTGCACCTTCAAA 60.370 43.478 0.00 0.00 34.47 2.69
3190 3582 0.857935 CTCGATCCAATCTTGCTCGC 59.142 55.000 0.00 0.00 34.17 5.03
3434 4995 9.869757 AGTTTTCAATTAGGTGGCAATAAATAC 57.130 29.630 0.00 0.00 0.00 1.89
3475 5036 2.955477 TTGCATTGCACAACTGTTCA 57.045 40.000 11.66 0.00 38.71 3.18
3501 5062 5.893255 CCTCTGGAATTTGGTGGATGATTTA 59.107 40.000 0.00 0.00 0.00 1.40
3789 5354 7.759489 TCTTTGCTTAAATGTCCAGTATGTT 57.241 32.000 0.00 0.00 0.00 2.71
4107 5672 6.435277 AGTTGAAGCAACATATCCAAGAACAT 59.565 34.615 12.25 0.00 45.66 2.71
4122 5687 4.684265 CATGAACGCATGCTCAGC 57.316 55.556 17.13 2.98 44.76 4.26
4233 5799 0.179100 CTCAATGGTCGCATCGAGGT 60.179 55.000 0.00 0.00 36.23 3.85
4280 5846 1.952296 GGCCTCTGCATAACAAGATGG 59.048 52.381 0.00 0.00 40.13 3.51
4373 5939 0.316204 CAGGGCTGCTTCCAGTTTTG 59.684 55.000 0.00 0.00 41.26 2.44
4390 5956 7.608761 TCCAGTTTTGTTATATGTTGTACTCCC 59.391 37.037 0.00 0.00 0.00 4.30
4393 5959 8.603304 AGTTTTGTTATATGTTGTACTCCCTCT 58.397 33.333 0.00 0.00 0.00 3.69
4394 5960 8.665685 GTTTTGTTATATGTTGTACTCCCTCTG 58.334 37.037 0.00 0.00 0.00 3.35
4401 5967 2.572104 GTTGTACTCCCTCTGTCCCAAT 59.428 50.000 0.00 0.00 0.00 3.16
4423 5989 8.665685 CCAATATAAGTGTCTCAACTTTGTACC 58.334 37.037 0.00 0.00 40.77 3.34
4471 6037 4.825085 GGTTGAGACACTTATTTTGGGACA 59.175 41.667 0.00 0.00 0.00 4.02
4478 6044 5.316987 ACACTTATTTTGGGACAGAGGAAG 58.683 41.667 0.00 0.00 42.39 3.46
4553 6131 4.012374 CAACCCTCATGTATATGGCCATC 58.988 47.826 24.80 8.97 34.97 3.51
4619 6197 7.709149 TCCATCTCTACATGTGGATATAGTG 57.291 40.000 12.75 7.26 35.91 2.74
4620 6198 7.241628 TCCATCTCTACATGTGGATATAGTGT 58.758 38.462 12.75 0.00 35.91 3.55
4621 6199 7.730332 TCCATCTCTACATGTGGATATAGTGTT 59.270 37.037 12.75 0.00 35.91 3.32
4622 6200 8.370940 CCATCTCTACATGTGGATATAGTGTTT 58.629 37.037 12.75 0.00 33.53 2.83
4623 6201 9.770097 CATCTCTACATGTGGATATAGTGTTTT 57.230 33.333 12.75 0.00 0.00 2.43
4624 6202 9.988815 ATCTCTACATGTGGATATAGTGTTTTC 57.011 33.333 12.75 0.00 0.00 2.29
4625 6203 8.421784 TCTCTACATGTGGATATAGTGTTTTCC 58.578 37.037 12.75 0.00 0.00 3.13
4626 6204 8.084985 TCTACATGTGGATATAGTGTTTTCCA 57.915 34.615 7.97 0.00 35.93 3.53
4627 6205 8.713971 TCTACATGTGGATATAGTGTTTTCCAT 58.286 33.333 7.97 0.00 40.22 3.41
4628 6206 9.342308 CTACATGTGGATATAGTGTTTTCCATT 57.658 33.333 9.11 0.00 40.22 3.16
4629 6207 8.225603 ACATGTGGATATAGTGTTTTCCATTC 57.774 34.615 0.00 0.00 40.22 2.67
4630 6208 6.918892 TGTGGATATAGTGTTTTCCATTCG 57.081 37.500 0.00 0.00 40.22 3.34
4631 6209 5.295787 TGTGGATATAGTGTTTTCCATTCGC 59.704 40.000 0.00 0.00 40.22 4.70
4632 6210 5.295787 GTGGATATAGTGTTTTCCATTCGCA 59.704 40.000 0.00 0.00 40.22 5.10
4633 6211 5.883115 TGGATATAGTGTTTTCCATTCGCAA 59.117 36.000 0.00 0.00 33.40 4.85
4634 6212 6.375736 TGGATATAGTGTTTTCCATTCGCAAA 59.624 34.615 0.00 0.00 33.40 3.68
4635 6213 7.094162 TGGATATAGTGTTTTCCATTCGCAAAA 60.094 33.333 0.00 0.00 33.40 2.44
4636 6214 7.757624 GGATATAGTGTTTTCCATTCGCAAAAA 59.242 33.333 0.00 0.00 0.00 1.94
4729 6308 5.939764 TGAGAGGTAGCAACTATCATGTT 57.060 39.130 0.00 0.00 31.83 2.71
4749 6328 9.230122 TCATGTTTTCATTACTGTGTGATGTAT 57.770 29.630 0.00 0.00 38.64 2.29
4930 6510 6.586344 TGAGAGAATCAAGTCTTGTGAAGTT 58.414 36.000 12.30 2.02 37.82 2.66
4969 6549 2.302157 ACGGAAACTTAGGCAGCTACTT 59.698 45.455 0.00 0.00 0.00 2.24
5136 6716 9.726438 GAGGGAGCTATTAAATAAGCAGAAATA 57.274 33.333 9.62 0.00 0.00 1.40
5286 6866 3.388024 AGGAGTTTGTCTCAGTGCTAACA 59.612 43.478 0.00 0.00 44.40 2.41
5410 6990 6.767902 ACTCATATTTGGACGCTAATGTTCAT 59.232 34.615 0.00 0.00 0.00 2.57
5651 7231 6.994496 TGATGATATGATTGTCCAGAAAGACC 59.006 38.462 0.00 0.00 35.83 3.85
5763 7343 5.051816 TGTAGAGGAAAACAATTTCGACGT 58.948 37.500 0.00 0.00 44.83 4.34
5776 7356 0.452585 TCGACGTGGATTCATGCGTA 59.547 50.000 0.00 0.00 37.71 4.42
5848 7428 3.550233 GCATTACCAGCTTGCATGATCAG 60.550 47.826 0.09 0.00 36.40 2.90
6154 7750 4.478203 TGAAAGGTTCATGGGTTCAATCA 58.522 39.130 0.00 0.00 34.08 2.57
6157 7753 2.649312 AGGTTCATGGGTTCAATCAGGA 59.351 45.455 0.00 0.00 0.00 3.86
6163 7759 1.075374 TGGGTTCAATCAGGACTTGGG 59.925 52.381 0.00 0.00 0.00 4.12
6166 7762 3.053619 GGGTTCAATCAGGACTTGGGTAT 60.054 47.826 0.00 0.00 0.00 2.73
6256 7852 3.591196 TGGCTTGATTTGGCAATACAC 57.409 42.857 0.00 0.00 37.05 2.90
6257 7853 2.896044 TGGCTTGATTTGGCAATACACA 59.104 40.909 0.00 0.00 37.05 3.72
6258 7854 3.056678 TGGCTTGATTTGGCAATACACAG 60.057 43.478 0.00 6.43 37.05 3.66
6259 7855 2.925563 GCTTGATTTGGCAATACACAGC 59.074 45.455 0.00 11.55 0.00 4.40
6262 7858 5.450965 GCTTGATTTGGCAATACACAGCTAT 60.451 40.000 19.82 5.18 0.00 2.97
6266 7862 6.262944 TGATTTGGCAATACACAGCTATAAGG 59.737 38.462 0.00 0.00 0.00 2.69
6271 7867 5.491982 GCAATACACAGCTATAAGGGCTAT 58.508 41.667 0.00 0.00 38.03 2.97
6283 7879 6.874664 GCTATAAGGGCTATTGGAGAAAGTAC 59.125 42.308 0.00 0.00 0.00 2.73
6345 7941 5.494724 ACATTAACAGCAGTGACATGAGAT 58.505 37.500 0.00 0.00 0.00 2.75
6349 7945 4.541973 ACAGCAGTGACATGAGATGTAA 57.458 40.909 0.00 0.00 45.03 2.41
6355 7951 4.990426 CAGTGACATGAGATGTAACACACA 59.010 41.667 0.00 0.00 45.40 3.72
6356 7952 4.991056 AGTGACATGAGATGTAACACACAC 59.009 41.667 0.00 0.00 45.40 3.82
6361 7957 4.006780 TGAGATGTAACACACACTGCAT 57.993 40.909 0.00 0.00 40.86 3.96
6411 8007 1.378531 AACAGCGTGAACTTGCTTCA 58.621 45.000 0.00 0.00 40.03 3.02
6462 8058 6.019559 CGGGATGCAGTATTTATGATGTATCG 60.020 42.308 0.00 0.00 36.14 2.92
6464 8060 7.010552 GGGATGCAGTATTTATGATGTATCGAC 59.989 40.741 0.00 0.00 36.14 4.20
6476 8072 2.125326 TATCGACTGCACCTCCGGG 61.125 63.158 0.00 0.00 38.88 5.73
6547 8143 3.476552 CTTTCCTGCCAGAACACTACAA 58.523 45.455 0.00 0.00 0.00 2.41
6570 8166 0.610232 GGAGGCCAGAAGCACAACAT 60.610 55.000 5.01 0.00 46.50 2.71
6628 8224 2.309613 TCATTTGCACAGCTTGGAACT 58.690 42.857 0.00 0.00 34.84 3.01
6660 8256 5.693104 TGCAGTTCTTTGCTGATCATTTTTC 59.307 36.000 0.00 0.00 44.38 2.29
6697 8293 3.371898 GTGCTATTCTTTTTGCCCATTGC 59.628 43.478 0.00 0.00 41.77 3.56
6866 8463 3.378742 ACTGTCATGTTTTTGTGGCGTTA 59.621 39.130 0.00 0.00 0.00 3.18
6899 8497 2.565210 TTTTCTTGTGTGCTGTGCAG 57.435 45.000 0.00 0.00 40.08 4.41
6901 8499 1.462616 TTCTTGTGTGCTGTGCAGTT 58.537 45.000 0.00 0.00 40.08 3.16
6986 8584 8.682710 GCAACCTGGTCATTTAACATAAATCTA 58.317 33.333 0.00 0.00 0.00 1.98
7028 8626 2.363683 AGTAGTACTCCCTCCGTTTCG 58.636 52.381 0.00 0.00 0.00 3.46
7148 8769 5.477637 AGACTTATATTTAGGGACGGAGAGC 59.522 44.000 0.00 0.00 0.00 4.09
7173 8794 6.797033 CGTAGCTTTCAACTTCAAAACATAGG 59.203 38.462 0.00 0.00 0.00 2.57
7200 8821 4.828939 CCATAATGGCATAATGACAGTGGT 59.171 41.667 0.00 0.00 39.76 4.16
7315 8936 5.221422 GCTACATATTTGCCTATTGCCCAAA 60.221 40.000 0.00 0.00 40.16 3.28
7343 8964 1.661463 TCCAGCTGGGAGATTTCACT 58.339 50.000 32.23 0.00 42.15 3.41
7344 8965 1.988107 TCCAGCTGGGAGATTTCACTT 59.012 47.619 32.23 0.00 42.15 3.16
7346 8967 2.290514 CCAGCTGGGAGATTTCACTTCA 60.291 50.000 26.14 0.00 40.01 3.02
7349 8970 2.290577 GCTGGGAGATTTCACTTCAGGT 60.291 50.000 0.00 0.00 0.00 4.00
7372 8993 2.435372 ACAAGTTGTGAAGCTTGGGA 57.565 45.000 7.96 0.00 44.45 4.37
7377 8998 1.270550 GTTGTGAAGCTTGGGACCATG 59.729 52.381 2.10 0.00 0.00 3.66
7378 8999 0.770499 TGTGAAGCTTGGGACCATGA 59.230 50.000 2.10 0.00 0.00 3.07
7379 9000 1.271543 TGTGAAGCTTGGGACCATGAG 60.272 52.381 2.10 0.00 0.00 2.90
7390 9011 2.426414 GGGACCATGAGGAGGATAGTGA 60.426 54.545 0.00 0.00 38.69 3.41
7454 9075 1.354337 CTCCATGTCGAACCTGTGCG 61.354 60.000 0.00 0.00 0.00 5.34
7522 9143 2.677524 TGGTACGTCGGGTCCCTG 60.678 66.667 6.29 0.00 0.00 4.45
7525 9146 2.044650 TACGTCGGGTCCCTGGAG 60.045 66.667 6.29 0.00 0.00 3.86
7528 9149 3.391382 GTCGGGTCCCTGGAGGTG 61.391 72.222 6.29 0.00 36.75 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.109913 GTGACCCCCGAAACTTTCCT 59.890 55.000 0.00 0.00 0.00 3.36
143 146 1.032114 GTTCCCCTCCCATTTCAGCG 61.032 60.000 0.00 0.00 0.00 5.18
150 153 3.023735 GGCTGGTTCCCCTCCCAT 61.024 66.667 0.00 0.00 0.00 4.00
246 318 2.677875 GCCAAGGGGAGTGCCTTG 60.678 66.667 0.00 0.00 41.92 3.61
247 319 3.984732 GGCCAAGGGGAGTGCCTT 61.985 66.667 0.00 0.00 40.77 4.35
370 455 0.178873 AAGAGGTGTAGCAAGGGGGA 60.179 55.000 0.00 0.00 0.00 4.81
389 474 1.984570 CCAAGCGTCTGAGGGAGGA 60.985 63.158 0.00 0.00 32.10 3.71
444 529 1.878088 GATCCAGTAGTATGACGGCGA 59.122 52.381 16.62 0.00 0.00 5.54
454 539 5.276440 AGAGGTTGATGAAGATCCAGTAGT 58.724 41.667 0.00 0.00 0.00 2.73
595 681 2.077821 GATCGAGCGGAAGGGAGTCC 62.078 65.000 0.00 0.00 0.00 3.85
644 754 9.254133 CAATCTATGAGTTCATCTAACAACGAT 57.746 33.333 0.00 0.00 40.83 3.73
651 763 9.993454 CCAAGATCAATCTATGAGTTCATCTAA 57.007 33.333 0.00 0.00 42.53 2.10
750 863 3.245193 TGTGTGAACATGGATGGGATTGA 60.245 43.478 0.00 0.00 0.00 2.57
754 867 1.704628 AGTGTGTGAACATGGATGGGA 59.295 47.619 0.00 0.00 0.00 4.37
796 909 7.496591 TCGCTGTCCGGTAAATTTTAGATTTAT 59.503 33.333 0.00 0.00 37.59 1.40
797 910 6.817641 TCGCTGTCCGGTAAATTTTAGATTTA 59.182 34.615 0.00 0.00 37.59 1.40
801 914 4.178540 CTCGCTGTCCGGTAAATTTTAGA 58.821 43.478 0.00 0.00 37.59 2.10
802 915 3.930848 ACTCGCTGTCCGGTAAATTTTAG 59.069 43.478 0.00 0.00 37.59 1.85
803 916 3.680937 CACTCGCTGTCCGGTAAATTTTA 59.319 43.478 0.00 0.00 37.59 1.52
804 917 2.482721 CACTCGCTGTCCGGTAAATTTT 59.517 45.455 0.00 0.00 37.59 1.82
936 1054 2.581354 GAGTGAGCAGCCGACCAT 59.419 61.111 0.00 0.00 0.00 3.55
937 1055 3.695606 GGAGTGAGCAGCCGACCA 61.696 66.667 0.00 0.00 0.00 4.02
961 1079 1.892474 GACTTGAGAGTGGAGACTGCT 59.108 52.381 0.00 0.00 35.88 4.24
962 1080 1.892474 AGACTTGAGAGTGGAGACTGC 59.108 52.381 0.00 0.00 35.88 4.40
985 1103 1.145803 GTAGTGGACAACGCAAGACC 58.854 55.000 0.00 0.00 43.62 3.85
1015 1138 0.321919 GACTGCTGACTGATTGGCCA 60.322 55.000 0.00 0.00 0.00 5.36
1034 1157 1.136984 GTACCTGCTCGTCGTGGAG 59.863 63.158 8.65 8.65 37.11 3.86
1035 1158 2.338015 GGTACCTGCTCGTCGTGGA 61.338 63.158 4.06 0.00 0.00 4.02
1037 1160 1.638388 TACGGTACCTGCTCGTCGTG 61.638 60.000 10.90 0.00 38.19 4.35
1060 1321 4.115199 GCCCTTCATGCCTCGGGT 62.115 66.667 9.27 0.00 38.97 5.28
1061 1322 4.883354 GGCCCTTCATGCCTCGGG 62.883 72.222 0.00 4.63 45.70 5.14
1185 1455 2.756283 CCGAGGAGGAAGGCGAGT 60.756 66.667 0.00 0.00 45.00 4.18
1214 1484 1.458777 AGGTGGGTTCACTGACCGA 60.459 57.895 0.00 0.00 43.17 4.69
1359 1642 5.143376 AGGAAAATGAGGCTCAAAACATG 57.857 39.130 22.84 0.00 0.00 3.21
1360 1643 4.221482 GGAGGAAAATGAGGCTCAAAACAT 59.779 41.667 22.84 10.85 0.00 2.71
1361 1644 3.573967 GGAGGAAAATGAGGCTCAAAACA 59.426 43.478 22.84 0.00 0.00 2.83
1363 1646 4.082125 GAGGAGGAAAATGAGGCTCAAAA 58.918 43.478 22.84 0.00 0.00 2.44
1366 1649 1.561542 GGAGGAGGAAAATGAGGCTCA 59.438 52.381 21.19 21.19 0.00 4.26
1367 1650 1.474143 CGGAGGAGGAAAATGAGGCTC 60.474 57.143 7.79 7.79 0.00 4.70
1368 1651 0.543749 CGGAGGAGGAAAATGAGGCT 59.456 55.000 0.00 0.00 0.00 4.58
1369 1652 3.086733 CGGAGGAGGAAAATGAGGC 57.913 57.895 0.00 0.00 0.00 4.70
1455 1743 1.630878 AGTCCCAGTTCCTAAAGGCAG 59.369 52.381 0.00 0.00 34.44 4.85
1501 1789 2.879907 CTTGTGCTTCATGCCCGG 59.120 61.111 0.00 0.00 42.00 5.73
1630 1923 0.583917 GGAAGAATCGCCGCAGAATC 59.416 55.000 0.00 0.00 0.00 2.52
1640 1933 2.704572 AGAAACCAGCAGGAAGAATCG 58.295 47.619 0.35 0.00 38.69 3.34
1783 2084 1.001406 GCAACCGATCCCTATCCTCAG 59.999 57.143 0.00 0.00 0.00 3.35
1790 2091 2.632996 CCAGAATAGCAACCGATCCCTA 59.367 50.000 0.00 0.00 0.00 3.53
1795 2096 2.158900 CCAGACCAGAATAGCAACCGAT 60.159 50.000 0.00 0.00 0.00 4.18
1871 2177 0.251297 CATCCCCTGAGCACCACAAA 60.251 55.000 0.00 0.00 0.00 2.83
1907 2213 1.412343 ACTTGGGATTTGCACAACACC 59.588 47.619 0.00 0.00 34.23 4.16
1940 2246 8.565896 ACTGCAAACACATCTTGATTTATCTA 57.434 30.769 0.00 0.00 0.00 1.98
1952 2261 7.095229 TGTGAGAATTAGTACTGCAAACACATC 60.095 37.037 5.39 0.00 0.00 3.06
1953 2262 6.710295 TGTGAGAATTAGTACTGCAAACACAT 59.290 34.615 5.39 0.00 0.00 3.21
2005 2314 4.978083 AGCTAATTTGGCAGAAGTGATG 57.022 40.909 7.53 0.00 0.00 3.07
2023 2332 2.289945 TGCAACCAAACCAACAAAAGCT 60.290 40.909 0.00 0.00 0.00 3.74
2035 2344 4.762765 ACCGTAATGATTACTGCAACCAAA 59.237 37.500 12.94 0.00 33.98 3.28
2072 2381 9.712305 TGGTTTTAGTTCAAATTTCAAAGTTGA 57.288 25.926 8.92 8.92 42.91 3.18
2073 2382 9.753669 GTGGTTTTAGTTCAAATTTCAAAGTTG 57.246 29.630 3.86 3.86 37.78 3.16
2074 2383 8.652463 CGTGGTTTTAGTTCAAATTTCAAAGTT 58.348 29.630 0.00 0.00 0.00 2.66
2075 2384 8.030106 TCGTGGTTTTAGTTCAAATTTCAAAGT 58.970 29.630 0.00 0.00 0.00 2.66
2076 2385 8.401046 TCGTGGTTTTAGTTCAAATTTCAAAG 57.599 30.769 0.00 0.00 0.00 2.77
2077 2386 8.934507 ATCGTGGTTTTAGTTCAAATTTCAAA 57.065 26.923 0.00 0.00 0.00 2.69
2079 2388 9.672086 CTTATCGTGGTTTTAGTTCAAATTTCA 57.328 29.630 0.00 0.00 0.00 2.69
2080 2389 9.673454 ACTTATCGTGGTTTTAGTTCAAATTTC 57.327 29.630 0.00 0.00 0.00 2.17
2087 2396 9.550811 CCAAAATACTTATCGTGGTTTTAGTTC 57.449 33.333 0.00 0.00 0.00 3.01
2088 2397 8.517056 CCCAAAATACTTATCGTGGTTTTAGTT 58.483 33.333 0.00 0.00 0.00 2.24
2089 2398 7.884354 TCCCAAAATACTTATCGTGGTTTTAGT 59.116 33.333 0.00 0.00 0.00 2.24
2090 2399 8.179615 GTCCCAAAATACTTATCGTGGTTTTAG 58.820 37.037 0.00 0.00 0.00 1.85
2091 2400 7.148440 CGTCCCAAAATACTTATCGTGGTTTTA 60.148 37.037 0.00 0.00 0.00 1.52
2092 2401 6.348704 CGTCCCAAAATACTTATCGTGGTTTT 60.349 38.462 0.00 0.00 0.00 2.43
2093 2402 5.122711 CGTCCCAAAATACTTATCGTGGTTT 59.877 40.000 0.00 0.00 0.00 3.27
2094 2403 4.632688 CGTCCCAAAATACTTATCGTGGTT 59.367 41.667 0.00 0.00 0.00 3.67
2095 2404 4.081531 TCGTCCCAAAATACTTATCGTGGT 60.082 41.667 0.00 0.00 0.00 4.16
2096 2405 4.435425 TCGTCCCAAAATACTTATCGTGG 58.565 43.478 0.00 0.00 0.00 4.94
2097 2406 5.006358 CCTTCGTCCCAAAATACTTATCGTG 59.994 44.000 0.00 0.00 0.00 4.35
2098 2407 5.114081 CCTTCGTCCCAAAATACTTATCGT 58.886 41.667 0.00 0.00 0.00 3.73
2099 2408 4.510340 CCCTTCGTCCCAAAATACTTATCG 59.490 45.833 0.00 0.00 0.00 2.92
2100 2409 5.677567 TCCCTTCGTCCCAAAATACTTATC 58.322 41.667 0.00 0.00 0.00 1.75
2101 2410 5.191124 ACTCCCTTCGTCCCAAAATACTTAT 59.809 40.000 0.00 0.00 0.00 1.73
2102 2411 4.533311 ACTCCCTTCGTCCCAAAATACTTA 59.467 41.667 0.00 0.00 0.00 2.24
2103 2412 3.329814 ACTCCCTTCGTCCCAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
2104 2413 2.910977 ACTCCCTTCGTCCCAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
2105 2414 3.345508 ACTCCCTTCGTCCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
2106 2415 3.119029 CGTACTCCCTTCGTCCCAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
2107 2416 2.354403 CGTACTCCCTTCGTCCCAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
2108 2417 1.001181 CGTACTCCCTTCGTCCCAAAA 59.999 52.381 0.00 0.00 0.00 2.44
2109 2418 0.604578 CGTACTCCCTTCGTCCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
2110 2419 0.251297 TCGTACTCCCTTCGTCCCAA 60.251 55.000 0.00 0.00 0.00 4.12
2111 2420 0.962356 GTCGTACTCCCTTCGTCCCA 60.962 60.000 0.00 0.00 0.00 4.37
2112 2421 0.679321 AGTCGTACTCCCTTCGTCCC 60.679 60.000 0.00 0.00 0.00 4.46
2113 2422 1.172175 AAGTCGTACTCCCTTCGTCC 58.828 55.000 0.00 0.00 0.00 4.79
2114 2423 3.181502 CCTTAAGTCGTACTCCCTTCGTC 60.182 52.174 0.97 0.00 0.00 4.20
2115 2424 2.751806 CCTTAAGTCGTACTCCCTTCGT 59.248 50.000 0.97 0.00 0.00 3.85
2116 2425 2.098770 CCCTTAAGTCGTACTCCCTTCG 59.901 54.545 0.97 0.00 0.00 3.79
2117 2426 2.159128 GCCCTTAAGTCGTACTCCCTTC 60.159 54.545 0.97 0.00 0.00 3.46
2118 2427 1.829849 GCCCTTAAGTCGTACTCCCTT 59.170 52.381 0.97 0.00 0.00 3.95
2119 2428 1.482954 GCCCTTAAGTCGTACTCCCT 58.517 55.000 0.97 0.00 0.00 4.20
2120 2429 0.463204 GGCCCTTAAGTCGTACTCCC 59.537 60.000 0.97 0.00 0.00 4.30
2121 2430 1.136500 CAGGCCCTTAAGTCGTACTCC 59.864 57.143 0.00 0.00 0.00 3.85
2122 2431 1.823610 ACAGGCCCTTAAGTCGTACTC 59.176 52.381 0.00 0.00 0.00 2.59
2123 2432 1.934410 ACAGGCCCTTAAGTCGTACT 58.066 50.000 0.00 0.00 0.00 2.73
2124 2433 2.614779 GAACAGGCCCTTAAGTCGTAC 58.385 52.381 0.00 0.00 0.00 3.67
2125 2434 1.551883 GGAACAGGCCCTTAAGTCGTA 59.448 52.381 0.00 0.00 0.00 3.43
2126 2435 0.323957 GGAACAGGCCCTTAAGTCGT 59.676 55.000 0.00 0.00 0.00 4.34
2127 2436 0.323629 TGGAACAGGCCCTTAAGTCG 59.676 55.000 0.00 0.00 0.00 4.18
2128 2437 2.160205 GTTGGAACAGGCCCTTAAGTC 58.840 52.381 0.00 0.00 42.39 3.01
2129 2438 1.203013 GGTTGGAACAGGCCCTTAAGT 60.203 52.381 0.00 0.00 42.39 2.24
2130 2439 1.203001 TGGTTGGAACAGGCCCTTAAG 60.203 52.381 0.00 0.00 42.39 1.85
2131 2440 0.854218 TGGTTGGAACAGGCCCTTAA 59.146 50.000 0.00 0.00 42.39 1.85
2132 2441 0.854218 TTGGTTGGAACAGGCCCTTA 59.146 50.000 0.00 0.00 42.39 2.69
2133 2442 0.759060 GTTGGTTGGAACAGGCCCTT 60.759 55.000 0.00 0.00 42.39 3.95
2134 2443 1.152546 GTTGGTTGGAACAGGCCCT 60.153 57.895 0.00 0.00 42.39 5.19
2135 2444 0.759060 AAGTTGGTTGGAACAGGCCC 60.759 55.000 0.00 0.00 42.39 5.80
2136 2445 0.389025 CAAGTTGGTTGGAACAGGCC 59.611 55.000 0.00 0.00 42.39 5.19
2137 2446 1.067060 GACAAGTTGGTTGGAACAGGC 59.933 52.381 7.96 0.00 42.39 4.85
2138 2447 2.374184 TGACAAGTTGGTTGGAACAGG 58.626 47.619 7.96 0.00 42.39 4.00
2139 2448 4.448537 TTTGACAAGTTGGTTGGAACAG 57.551 40.909 7.96 0.00 42.39 3.16
2140 2449 4.815269 CTTTTGACAAGTTGGTTGGAACA 58.185 39.130 7.96 0.00 40.90 3.18
2141 2450 3.616821 GCTTTTGACAAGTTGGTTGGAAC 59.383 43.478 7.96 0.00 40.90 3.62
2142 2451 3.513515 AGCTTTTGACAAGTTGGTTGGAA 59.486 39.130 7.96 0.00 40.90 3.53
2143 2452 3.096092 AGCTTTTGACAAGTTGGTTGGA 58.904 40.909 7.96 0.00 40.90 3.53
2144 2453 3.131046 AGAGCTTTTGACAAGTTGGTTGG 59.869 43.478 7.96 0.00 40.90 3.77
2145 2454 4.376340 AGAGCTTTTGACAAGTTGGTTG 57.624 40.909 7.96 0.00 42.48 3.77
2146 2455 4.462483 TGAAGAGCTTTTGACAAGTTGGTT 59.538 37.500 7.96 0.00 0.00 3.67
2147 2456 4.016444 TGAAGAGCTTTTGACAAGTTGGT 58.984 39.130 7.96 0.00 0.00 3.67
2148 2457 4.637483 TGAAGAGCTTTTGACAAGTTGG 57.363 40.909 7.96 0.00 0.00 3.77
2149 2458 6.532657 ACAAATGAAGAGCTTTTGACAAGTTG 59.467 34.615 13.40 0.00 41.60 3.16
2150 2459 6.633856 ACAAATGAAGAGCTTTTGACAAGTT 58.366 32.000 13.40 0.00 41.60 2.66
2151 2460 6.096001 AGACAAATGAAGAGCTTTTGACAAGT 59.904 34.615 13.40 0.00 41.60 3.16
2152 2461 6.501781 AGACAAATGAAGAGCTTTTGACAAG 58.498 36.000 13.40 0.00 41.60 3.16
2153 2462 6.455360 AGACAAATGAAGAGCTTTTGACAA 57.545 33.333 13.40 0.00 41.60 3.18
2154 2463 7.750229 ATAGACAAATGAAGAGCTTTTGACA 57.250 32.000 13.40 0.00 41.60 3.58
2155 2464 8.909671 CAAATAGACAAATGAAGAGCTTTTGAC 58.090 33.333 13.40 8.12 41.60 3.18
2156 2465 8.849168 TCAAATAGACAAATGAAGAGCTTTTGA 58.151 29.630 13.40 5.76 41.60 2.69
2157 2466 9.635520 ATCAAATAGACAAATGAAGAGCTTTTG 57.364 29.630 6.32 6.32 43.49 2.44
2158 2467 9.635520 CATCAAATAGACAAATGAAGAGCTTTT 57.364 29.630 0.00 0.00 0.00 2.27
2258 2567 8.595362 TGGACTTTGATCTACTAGATTTCTCA 57.405 34.615 0.00 0.00 34.53 3.27
2407 2794 2.829720 AGCGGTGTACTAATCCAAGTCA 59.170 45.455 0.00 0.00 0.00 3.41
2425 2812 1.405821 AGTAAGAAGGACGATGGAGCG 59.594 52.381 0.00 0.00 37.29 5.03
2433 2820 4.271049 CCATTGCATACAGTAAGAAGGACG 59.729 45.833 0.00 0.00 0.00 4.79
2493 2880 2.768527 TGATCTCCATGACAGGTCCTTC 59.231 50.000 0.00 0.00 0.00 3.46
2500 2887 5.922053 TCTTACCATTGATCTCCATGACAG 58.078 41.667 0.00 0.00 0.00 3.51
2526 2913 7.546358 TGCCAACACCAGATAAAAGATAATTG 58.454 34.615 0.00 0.00 0.00 2.32
2528 2915 7.716799 TTGCCAACACCAGATAAAAGATAAT 57.283 32.000 0.00 0.00 0.00 1.28
2538 2926 5.071653 ACCTAAAAATTTGCCAACACCAGAT 59.928 36.000 0.00 0.00 0.00 2.90
2542 2930 4.956085 AGACCTAAAAATTTGCCAACACC 58.044 39.130 0.00 0.00 0.00 4.16
2555 2944 6.959639 AAGTGAAATGCAGAAGACCTAAAA 57.040 33.333 0.00 0.00 0.00 1.52
2564 2953 6.899393 ATTACTGGAAAGTGAAATGCAGAA 57.101 33.333 1.24 0.00 38.26 3.02
2583 2972 5.532406 TGGCATGCTCTCTTCCAAATATTAC 59.468 40.000 18.92 0.00 0.00 1.89
2710 3100 3.073678 CCATGTGACGTCCTGAAAATCA 58.926 45.455 14.12 0.30 0.00 2.57
2753 3143 4.804665 CACACTGAAATGCAACAATGTTCA 59.195 37.500 0.00 0.00 0.00 3.18
2793 3183 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
2794 3184 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
2795 3185 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2796 3186 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2797 3187 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2798 3188 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2799 3189 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2800 3190 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2801 3191 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2802 3192 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2814 3204 9.953697 CTACTTAAGTGATCTAAACGCTCTTAT 57.046 33.333 18.56 0.00 0.00 1.73
2815 3205 8.954350 ACTACTTAAGTGATCTAAACGCTCTTA 58.046 33.333 18.56 0.00 36.93 2.10
2816 3206 7.828712 ACTACTTAAGTGATCTAAACGCTCTT 58.171 34.615 18.56 0.00 36.93 2.85
2817 3207 7.393841 ACTACTTAAGTGATCTAAACGCTCT 57.606 36.000 18.56 0.00 36.93 4.09
2848 3238 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
2849 3239 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
2850 3240 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
2851 3241 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2852 3242 9.757227 CACTCCCTCTGTAAAGAAATATAAGAG 57.243 37.037 0.00 0.00 0.00 2.85
2853 3243 9.268282 ACACTCCCTCTGTAAAGAAATATAAGA 57.732 33.333 0.00 0.00 0.00 2.10
2857 3247 8.993424 ACATACACTCCCTCTGTAAAGAAATAT 58.007 33.333 0.00 0.00 0.00 1.28
2858 3248 8.375493 ACATACACTCCCTCTGTAAAGAAATA 57.625 34.615 0.00 0.00 0.00 1.40
2859 3249 7.259088 ACATACACTCCCTCTGTAAAGAAAT 57.741 36.000 0.00 0.00 0.00 2.17
2860 3250 6.681729 ACATACACTCCCTCTGTAAAGAAA 57.318 37.500 0.00 0.00 0.00 2.52
2861 3251 6.681729 AACATACACTCCCTCTGTAAAGAA 57.318 37.500 0.00 0.00 0.00 2.52
2862 3252 6.681729 AAACATACACTCCCTCTGTAAAGA 57.318 37.500 0.00 0.00 0.00 2.52
2863 3253 7.228706 ACAAAAACATACACTCCCTCTGTAAAG 59.771 37.037 0.00 0.00 0.00 1.85
2864 3254 7.012894 CACAAAAACATACACTCCCTCTGTAAA 59.987 37.037 0.00 0.00 0.00 2.01
2865 3255 6.485313 CACAAAAACATACACTCCCTCTGTAA 59.515 38.462 0.00 0.00 0.00 2.41
2866 3256 5.995282 CACAAAAACATACACTCCCTCTGTA 59.005 40.000 0.00 0.00 0.00 2.74
2867 3257 4.821805 CACAAAAACATACACTCCCTCTGT 59.178 41.667 0.00 0.00 0.00 3.41
2868 3258 4.216257 CCACAAAAACATACACTCCCTCTG 59.784 45.833 0.00 0.00 0.00 3.35
2869 3259 4.398319 CCACAAAAACATACACTCCCTCT 58.602 43.478 0.00 0.00 0.00 3.69
2870 3260 3.506067 CCCACAAAAACATACACTCCCTC 59.494 47.826 0.00 0.00 0.00 4.30
2871 3261 3.496331 CCCACAAAAACATACACTCCCT 58.504 45.455 0.00 0.00 0.00 4.20
2872 3262 2.029380 GCCCACAAAAACATACACTCCC 60.029 50.000 0.00 0.00 0.00 4.30
2873 3263 2.890945 AGCCCACAAAAACATACACTCC 59.109 45.455 0.00 0.00 0.00 3.85
2874 3264 5.699097 TTAGCCCACAAAAACATACACTC 57.301 39.130 0.00 0.00 0.00 3.51
2875 3265 5.361285 TGTTTAGCCCACAAAAACATACACT 59.639 36.000 0.00 0.00 37.99 3.55
2876 3266 5.593010 TGTTTAGCCCACAAAAACATACAC 58.407 37.500 0.00 0.00 37.99 2.90
2877 3267 5.854010 TGTTTAGCCCACAAAAACATACA 57.146 34.783 0.00 0.00 37.99 2.29
2878 3268 5.120053 GCATGTTTAGCCCACAAAAACATAC 59.880 40.000 11.14 4.11 46.65 2.39
2950 3340 6.816134 AACATTTTGAAGGTGCAAAACTTT 57.184 29.167 0.00 0.00 46.74 2.66
3285 4844 8.822805 TGAGGTGTAAGGAAACTAAACATAGAT 58.177 33.333 0.00 0.00 42.68 1.98
3411 4970 7.971168 CGTGTATTTATTGCCACCTAATTGAAA 59.029 33.333 0.00 0.00 0.00 2.69
3434 4995 1.060713 CAGACTACGACAAAGGCGTG 58.939 55.000 8.35 0.99 42.62 5.34
3475 5036 1.455822 TCCACCAAATTCCAGAGGGT 58.544 50.000 0.00 0.00 34.93 4.34
3597 5162 3.070302 GGATCTGATGTACAAGGTCTCCC 59.930 52.174 0.00 0.00 0.00 4.30
3789 5354 3.074687 TCCAAATGGCCCACTAGTACAAA 59.925 43.478 0.00 0.00 34.44 2.83
4122 5687 0.098200 CAGCATCTGCAATGGTGTCG 59.902 55.000 22.17 7.31 45.16 4.35
4233 5799 5.295787 GTGTGAACTCTTTGTGGTTGTATCA 59.704 40.000 0.00 0.00 0.00 2.15
4373 5939 6.462628 GGGACAGAGGGAGTACAACATATAAC 60.463 46.154 0.00 0.00 0.00 1.89
4390 5956 6.471233 TGAGACACTTATATTGGGACAGAG 57.529 41.667 0.00 0.00 42.39 3.35
4393 5959 6.620877 AGTTGAGACACTTATATTGGGACA 57.379 37.500 0.00 0.00 0.00 4.02
4394 5960 7.390718 ACAAAGTTGAGACACTTATATTGGGAC 59.609 37.037 0.00 0.00 35.87 4.46
4471 6037 8.770010 ACTAGCAAATATGTAGTACTTCCTCT 57.230 34.615 0.00 0.00 0.00 3.69
4478 6044 7.863375 CCAGTCTGACTAGCAAATATGTAGTAC 59.137 40.741 10.47 0.00 0.00 2.73
4553 6131 6.547141 TCTTAATGCCTCCATACAAATTCCAG 59.453 38.462 0.00 0.00 0.00 3.86
4596 6174 7.473735 ACACTATATCCACATGTAGAGATGG 57.526 40.000 11.06 10.48 30.17 3.51
4605 6183 7.355017 CGAATGGAAAACACTATATCCACATG 58.645 38.462 0.00 0.00 44.25 3.21
4643 6221 6.877611 TCATTACAGGGAGAAAACACTTTC 57.122 37.500 0.00 0.00 41.19 2.62
4683 6262 9.571816 TCAAATACATATTCCAAGTGATGCATA 57.428 29.630 0.00 0.00 0.00 3.14
4693 6272 7.801104 TGCTACCTCTCAAATACATATTCCAA 58.199 34.615 0.00 0.00 0.00 3.53
4695 6274 7.934120 AGTTGCTACCTCTCAAATACATATTCC 59.066 37.037 0.00 0.00 0.00 3.01
4969 6549 9.896645 AAATAAGCTTCATCTTCAGTTAGATCA 57.103 29.630 0.00 0.00 32.60 2.92
5136 6716 4.469227 AGTGATAGAAGGCAGTGTCTTCAT 59.531 41.667 32.97 24.37 45.53 2.57
5144 6724 7.366847 ACATTACATAGTGATAGAAGGCAGT 57.633 36.000 0.00 0.00 0.00 4.40
5286 6866 6.884832 TCCTGAAACATGTCGTAGGAAATAT 58.115 36.000 17.64 0.00 31.80 1.28
5410 6990 5.482163 TGTGATCCTCAATGTTAGTCACA 57.518 39.130 0.00 0.00 41.27 3.58
5498 7078 5.163992 GCTGAGAATGATTACGAAACGTGAA 60.164 40.000 7.05 0.00 41.39 3.18
5651 7231 4.277515 TGAGGTTCCAAAGAGATGACAG 57.722 45.455 0.00 0.00 0.00 3.51
5763 7343 3.134623 AGAGAACCATACGCATGAATCCA 59.865 43.478 0.00 0.00 33.67 3.41
5776 7356 5.762179 TTACATTCAGACCAGAGAACCAT 57.238 39.130 0.00 0.00 0.00 3.55
5848 7428 6.679327 AGTTTACTGACCTTTTGAAGTGAC 57.321 37.500 0.00 0.00 0.00 3.67
6154 7750 6.786843 ATTCCATAATCATACCCAAGTCCT 57.213 37.500 0.00 0.00 0.00 3.85
6157 7753 6.948309 GGCTAATTCCATAATCATACCCAAGT 59.052 38.462 0.00 0.00 0.00 3.16
6163 7759 6.183360 CGACACGGCTAATTCCATAATCATAC 60.183 42.308 0.00 0.00 0.00 2.39
6166 7762 4.055360 CGACACGGCTAATTCCATAATCA 58.945 43.478 0.00 0.00 0.00 2.57
6256 7852 5.489792 TTCTCCAATAGCCCTTATAGCTG 57.510 43.478 0.00 0.00 41.71 4.24
6257 7853 5.608860 ACTTTCTCCAATAGCCCTTATAGCT 59.391 40.000 0.00 0.00 44.49 3.32
6258 7854 5.870706 ACTTTCTCCAATAGCCCTTATAGC 58.129 41.667 0.00 0.00 0.00 2.97
6259 7855 7.963532 TGTACTTTCTCCAATAGCCCTTATAG 58.036 38.462 0.00 0.00 0.00 1.31
6262 7858 6.385759 TCATGTACTTTCTCCAATAGCCCTTA 59.614 38.462 0.00 0.00 0.00 2.69
6266 7862 5.675538 AGTCATGTACTTTCTCCAATAGCC 58.324 41.667 0.00 0.00 33.35 3.93
6271 7867 6.414732 CCCATTAGTCATGTACTTTCTCCAA 58.585 40.000 0.00 0.00 39.80 3.53
6283 7879 3.455910 TGAACCTCTCCCCATTAGTCATG 59.544 47.826 0.00 0.00 0.00 3.07
6329 7925 4.092529 GTGTTACATCTCATGTCACTGCTG 59.907 45.833 0.00 0.00 43.67 4.41
6330 7926 4.248859 GTGTTACATCTCATGTCACTGCT 58.751 43.478 0.00 0.00 43.67 4.24
6345 7941 4.306600 CAGACTATGCAGTGTGTGTTACA 58.693 43.478 9.78 0.00 40.35 2.41
6361 7957 5.076182 TCAAATTCCCACAAATGCAGACTA 58.924 37.500 0.00 0.00 0.00 2.59
6379 7975 1.067516 ACGCTGTTTGCTGCTTCAAAT 59.932 42.857 0.00 0.00 38.12 2.32
6398 7994 3.130340 TCCCTTTGTTGAAGCAAGTTCAC 59.870 43.478 0.00 0.00 45.23 3.18
6547 8143 1.289160 TGTGCTTCTGGCCTCCTAAT 58.711 50.000 3.32 0.00 40.92 1.73
6645 8241 8.081633 AGAATTTGTACGAAAAATGATCAGCAA 58.918 29.630 0.09 0.00 0.00 3.91
6674 8270 4.567971 CAATGGGCAAAAAGAATAGCACA 58.432 39.130 0.00 0.00 45.45 4.57
6697 8293 0.459237 CCCTCAGTGTAGCTCTTGCG 60.459 60.000 0.00 0.00 45.42 4.85
6883 8481 1.016627 GAACTGCACAGCACACAAGA 58.983 50.000 0.00 0.00 33.79 3.02
6899 8497 6.399639 TCCTTTACAAAACAGAATGGGAAC 57.600 37.500 0.00 0.00 43.62 3.62
6901 8499 7.610580 ATTTCCTTTACAAAACAGAATGGGA 57.389 32.000 0.00 0.00 43.62 4.37
6932 8530 2.705658 TCTGAGGAACAACCATGTGACT 59.294 45.455 0.00 0.00 40.46 3.41
7148 8769 6.797033 CCTATGTTTTGAAGTTGAAAGCTACG 59.203 38.462 3.61 0.00 0.00 3.51
7173 8794 5.536161 ACTGTCATTATGCCATTATGGTTCC 59.464 40.000 13.28 0.00 40.46 3.62
7200 8821 7.661536 ACTAAAGGCTAATCTCAGTGATGTA 57.338 36.000 0.00 0.00 35.21 2.29
7239 8860 3.702045 AGTCACCAGTTACCTGCTAGATC 59.298 47.826 0.00 0.00 37.38 2.75
7315 8936 1.611851 CCCAGCTGGACTCTCTGGT 60.612 63.158 34.91 0.00 44.41 4.00
7342 8963 5.730568 GCTTCACAACTTGTAACACCTGAAG 60.731 44.000 9.89 9.89 34.11 3.02
7343 8964 4.095782 GCTTCACAACTTGTAACACCTGAA 59.904 41.667 0.00 0.00 0.00 3.02
7344 8965 3.625764 GCTTCACAACTTGTAACACCTGA 59.374 43.478 0.00 0.00 0.00 3.86
7346 8967 3.886123 AGCTTCACAACTTGTAACACCT 58.114 40.909 0.00 0.00 0.00 4.00
7349 8970 3.380004 CCCAAGCTTCACAACTTGTAACA 59.620 43.478 0.00 0.00 41.36 2.41
7372 8993 2.248686 AGGTCACTATCCTCCTCATGGT 59.751 50.000 0.00 0.00 34.23 3.55
7377 8998 2.882137 CTCGAAGGTCACTATCCTCCTC 59.118 54.545 0.00 0.00 33.76 3.71
7378 8999 2.510382 TCTCGAAGGTCACTATCCTCCT 59.490 50.000 0.00 0.00 33.76 3.69
7379 9000 2.882137 CTCTCGAAGGTCACTATCCTCC 59.118 54.545 0.00 0.00 33.76 4.30
7390 9011 1.674057 CAAGTGCCCTCTCGAAGGT 59.326 57.895 11.21 0.00 44.56 3.50
7454 9075 2.817396 GAGGAAGCTCTGCGCCAC 60.817 66.667 4.18 0.00 40.39 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.