Multiple sequence alignment - TraesCS5B01G142300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G142300 chr5B 100.000 5282 0 0 1 5282 268429890 268435171 0.000000e+00 9755
1 TraesCS5B01G142300 chr5B 89.003 391 28 11 4906 5282 493563958 493564347 2.230000e-128 470
2 TraesCS5B01G142300 chr5B 86.224 392 29 14 4906 5282 661120815 661121196 8.240000e-108 401
3 TraesCS5B01G142300 chr5D 92.169 5006 182 78 1 4900 236665349 236660448 0.000000e+00 6879
4 TraesCS5B01G142300 chr5A 92.282 4146 157 65 1 4029 318754293 318758392 0.000000e+00 5733
5 TraesCS5B01G142300 chr5A 87.869 643 20 16 4053 4677 318758461 318759063 0.000000e+00 702
6 TraesCS5B01G142300 chr5A 88.451 381 36 7 4906 5282 673520933 673520557 2.240000e-123 453
7 TraesCS5B01G142300 chr5A 87.990 383 35 10 4906 5282 504236308 504235931 4.850000e-120 442
8 TraesCS5B01G142300 chr5A 93.000 100 5 2 3942 4041 25130112 25130209 1.530000e-30 145
9 TraesCS5B01G142300 chr5A 77.626 219 18 15 4663 4874 318759077 318759271 2.600000e-18 104
10 TraesCS5B01G142300 chr7B 93.122 378 23 3 4906 5282 667782711 667783086 7.730000e-153 551
11 TraesCS5B01G142300 chr7B 91.279 344 28 2 4906 5248 659240205 659239863 8.010000e-128 468
12 TraesCS5B01G142300 chr4B 90.769 390 19 3 4907 5281 1114504 1114891 6.100000e-139 505
13 TraesCS5B01G142300 chr4B 76.809 608 91 26 1333 1919 149938805 149938227 4.000000e-76 296
14 TraesCS5B01G142300 chr4B 91.892 185 15 0 2037 2221 149938143 149937959 5.250000e-65 259
15 TraesCS5B01G142300 chr4B 91.667 168 11 3 1033 1197 149939084 149938917 4.110000e-56 230
16 TraesCS5B01G142300 chr4A 89.796 392 25 2 4906 5282 689832825 689832434 6.150000e-134 488
17 TraesCS5B01G142300 chr4A 92.432 185 14 0 2037 2221 469513121 469513305 1.130000e-66 265
18 TraesCS5B01G142300 chr4A 75.329 608 91 30 1333 1919 469512468 469513037 2.460000e-58 237
19 TraesCS5B01G142300 chr4A 91.667 168 11 3 1033 1197 469512189 469512356 4.110000e-56 230
20 TraesCS5B01G142300 chr3B 90.671 343 31 1 4906 5248 818933642 818933983 6.240000e-124 455
21 TraesCS5B01G142300 chr6B 88.624 378 28 9 4906 5279 537302527 537302161 3.750000e-121 446
22 TraesCS5B01G142300 chr6B 86.294 394 32 14 4906 5282 702273069 702273457 4.920000e-110 409
23 TraesCS5B01G142300 chr6B 85.823 395 35 11 4906 5282 91126551 91126160 2.960000e-107 399
24 TraesCS5B01G142300 chr6B 84.406 404 34 16 4906 5282 182751842 182751441 2.320000e-98 370
25 TraesCS5B01G142300 chr6B 82.382 403 45 16 4906 5282 643861017 643861419 1.420000e-85 327
26 TraesCS5B01G142300 chr4D 76.480 608 94 25 1333 1919 106416712 106416133 8.660000e-73 285
27 TraesCS5B01G142300 chr4D 91.892 185 15 0 2037 2221 106416049 106415865 5.250000e-65 259
28 TraesCS5B01G142300 chr4D 91.667 168 11 3 1033 1197 106416991 106416824 4.110000e-56 230
29 TraesCS5B01G142300 chr4D 93.000 100 5 2 3942 4041 490887596 490887693 1.530000e-30 145
30 TraesCS5B01G142300 chrUn 93.000 100 5 2 3942 4041 345163363 345163460 1.530000e-30 145
31 TraesCS5B01G142300 chr6D 93.000 100 5 2 3942 4041 378804445 378804348 1.530000e-30 145
32 TraesCS5B01G142300 chr3D 93.000 100 5 2 3942 4041 206172616 206172713 1.530000e-30 145
33 TraesCS5B01G142300 chr2B 91.262 103 9 0 2583 2685 86212610 86212712 1.980000e-29 141
34 TraesCS5B01G142300 chr2A 92.000 100 6 2 3942 4041 303670599 303670696 7.130000e-29 139
35 TraesCS5B01G142300 chr2A 89.320 103 11 0 2583 2685 55852821 55852923 4.290000e-26 130
36 TraesCS5B01G142300 chr2D 90.291 103 10 0 2583 2685 55058953 55059055 9.230000e-28 135
37 TraesCS5B01G142300 chr3A 90.000 100 8 2 3942 4041 748846482 748846579 1.540000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G142300 chr5B 268429890 268435171 5281 False 9755.000000 9755 100.000000 1 5282 1 chr5B.!!$F1 5281
1 TraesCS5B01G142300 chr5D 236660448 236665349 4901 True 6879.000000 6879 92.169000 1 4900 1 chr5D.!!$R1 4899
2 TraesCS5B01G142300 chr5A 318754293 318759271 4978 False 2179.666667 5733 85.925667 1 4874 3 chr5A.!!$F2 4873
3 TraesCS5B01G142300 chr4B 149937959 149939084 1125 True 261.666667 296 86.789333 1033 2221 3 chr4B.!!$R1 1188
4 TraesCS5B01G142300 chr4A 469512189 469513305 1116 False 244.000000 265 86.476000 1033 2221 3 chr4A.!!$F1 1188
5 TraesCS5B01G142300 chr4D 106415865 106416991 1126 True 258.000000 285 86.679667 1033 2221 3 chr4D.!!$R1 1188

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 204 0.242017 GAAGCACATTCACTGCACCC 59.758 55.0 0.00 0.0 37.88 4.61 F
760 797 0.664166 GCACAAGCAAATCCGTGGTG 60.664 55.0 0.00 0.0 41.58 4.17 F
2493 2623 0.109412 GCGCTGCTGCATTCTTCTTT 60.109 50.0 16.29 0.0 39.64 2.52 F
2938 3096 0.548989 TACTGTGGCTTGTGGTTGGT 59.451 50.0 0.00 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1801 0.685097 TAGCACCGGAAAGAGCAACT 59.315 50.0 9.46 0.0 0.00 3.16 R
2520 2659 0.958091 CCCTGACAAACCAATCGCAA 59.042 50.0 0.00 0.0 0.00 4.85 R
3691 3870 0.112025 AAGAAGCAGCAGCCTCCTTT 59.888 50.0 0.00 0.0 43.56 3.11 R
4935 5241 0.035439 AATCTGGCCAATCCGAACGT 60.035 50.0 7.01 0.0 37.80 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 1.360192 GCTGGTGTGAACTGGTTGC 59.640 57.895 0.00 0.00 0.00 4.17
202 204 0.242017 GAAGCACATTCACTGCACCC 59.758 55.000 0.00 0.00 37.88 4.61
285 289 3.007614 ACCAGTCAAAGTATAACTGCCGT 59.992 43.478 0.00 0.00 39.23 5.68
396 400 9.616156 TCGTTATTTACACCAACCATAATACAT 57.384 29.630 0.00 0.00 0.00 2.29
441 445 5.502058 CGACAATGTAAACACGTTGTACCAA 60.502 40.000 13.69 0.00 46.24 3.67
482 486 6.183360 ACGATGAAGTACAACTATTGCAATGG 60.183 38.462 22.27 21.13 0.00 3.16
489 493 8.213518 AGTACAACTATTGCAATGGACTAATG 57.786 34.615 27.32 18.07 35.23 1.90
490 494 5.894807 ACAACTATTGCAATGGACTAATGC 58.105 37.500 27.32 0.00 40.45 3.56
523 533 5.106197 ACATTGTGCACAATCGTGTTCATAT 60.106 36.000 36.19 14.25 44.10 1.78
528 538 3.002656 GCACAATCGTGTTCATATGGAGG 59.997 47.826 2.13 0.00 45.50 4.30
530 540 4.509230 CACAATCGTGTTCATATGGAGGAG 59.491 45.833 2.13 0.00 38.41 3.69
531 541 4.162320 ACAATCGTGTTCATATGGAGGAGT 59.838 41.667 2.13 0.00 32.58 3.85
532 542 3.801114 TCGTGTTCATATGGAGGAGTG 57.199 47.619 2.13 0.00 0.00 3.51
534 544 3.381590 TCGTGTTCATATGGAGGAGTGAG 59.618 47.826 2.13 0.00 0.00 3.51
535 545 3.381590 CGTGTTCATATGGAGGAGTGAGA 59.618 47.826 2.13 0.00 0.00 3.27
536 546 4.142160 CGTGTTCATATGGAGGAGTGAGAA 60.142 45.833 2.13 0.00 0.00 2.87
538 548 4.162320 TGTTCATATGGAGGAGTGAGAACC 59.838 45.833 2.13 0.00 34.73 3.62
539 549 4.271807 TCATATGGAGGAGTGAGAACCT 57.728 45.455 2.13 0.00 39.41 3.50
540 550 5.403558 TCATATGGAGGAGTGAGAACCTA 57.596 43.478 2.13 0.00 36.57 3.08
541 551 5.777449 TCATATGGAGGAGTGAGAACCTAA 58.223 41.667 2.13 0.00 36.57 2.69
542 552 6.202331 TCATATGGAGGAGTGAGAACCTAAA 58.798 40.000 2.13 0.00 36.57 1.85
543 553 4.828072 ATGGAGGAGTGAGAACCTAAAC 57.172 45.455 0.00 0.00 36.57 2.01
544 554 3.858135 TGGAGGAGTGAGAACCTAAACT 58.142 45.455 0.00 0.00 36.57 2.66
545 555 5.006896 TGGAGGAGTGAGAACCTAAACTA 57.993 43.478 0.00 0.00 36.57 2.24
546 556 5.399991 TGGAGGAGTGAGAACCTAAACTAA 58.600 41.667 0.00 0.00 36.57 2.24
547 557 5.842328 TGGAGGAGTGAGAACCTAAACTAAA 59.158 40.000 0.00 0.00 36.57 1.85
553 563 6.679843 AGTGAGAACCTAAACTAAAGACTCG 58.320 40.000 0.00 0.00 0.00 4.18
579 589 4.565564 ACGGCGAACTATTGTGATCTTTAC 59.434 41.667 16.62 0.00 0.00 2.01
628 639 1.191535 TGGTTGGAGGATAGACCACG 58.808 55.000 0.00 0.00 42.04 4.94
633 644 3.604875 TGGAGGATAGACCACGAAAAC 57.395 47.619 0.00 0.00 42.04 2.43
646 657 4.269844 ACCACGAAAACAAATCAAACATGC 59.730 37.500 0.00 0.00 0.00 4.06
650 661 5.689961 ACGAAAACAAATCAAACATGCCTAC 59.310 36.000 0.00 0.00 0.00 3.18
679 690 3.383185 GGAATGACCAAACCAACAACTCA 59.617 43.478 0.00 0.00 38.79 3.41
680 691 4.142049 GGAATGACCAAACCAACAACTCAA 60.142 41.667 0.00 0.00 38.79 3.02
681 692 5.413309 AATGACCAAACCAACAACTCAAA 57.587 34.783 0.00 0.00 0.00 2.69
682 693 4.873746 TGACCAAACCAACAACTCAAAA 57.126 36.364 0.00 0.00 0.00 2.44
683 694 5.413309 TGACCAAACCAACAACTCAAAAT 57.587 34.783 0.00 0.00 0.00 1.82
684 695 5.799213 TGACCAAACCAACAACTCAAAATT 58.201 33.333 0.00 0.00 0.00 1.82
685 696 6.234177 TGACCAAACCAACAACTCAAAATTT 58.766 32.000 0.00 0.00 0.00 1.82
686 697 6.148480 TGACCAAACCAACAACTCAAAATTTG 59.852 34.615 0.00 0.00 0.00 2.32
687 698 6.234177 ACCAAACCAACAACTCAAAATTTGA 58.766 32.000 8.25 8.25 38.17 2.69
688 699 6.712547 ACCAAACCAACAACTCAAAATTTGAA 59.287 30.769 9.85 0.00 39.58 2.69
689 700 7.229506 ACCAAACCAACAACTCAAAATTTGAAA 59.770 29.630 9.85 0.00 39.58 2.69
690 701 7.536964 CCAAACCAACAACTCAAAATTTGAAAC 59.463 33.333 9.85 0.00 39.58 2.78
691 702 7.736447 AACCAACAACTCAAAATTTGAAACA 57.264 28.000 9.85 0.00 39.58 2.83
692 703 7.920160 ACCAACAACTCAAAATTTGAAACAT 57.080 28.000 9.85 0.00 39.58 2.71
693 704 7.750769 ACCAACAACTCAAAATTTGAAACATG 58.249 30.769 9.85 8.51 39.58 3.21
694 705 7.605691 ACCAACAACTCAAAATTTGAAACATGA 59.394 29.630 9.85 0.00 39.58 3.07
695 706 8.614346 CCAACAACTCAAAATTTGAAACATGAT 58.386 29.630 9.85 0.00 39.58 2.45
728 755 1.813513 GATCCAGGTGTTGACCACAG 58.186 55.000 0.00 0.00 45.98 3.66
760 797 0.664166 GCACAAGCAAATCCGTGGTG 60.664 55.000 0.00 0.00 41.58 4.17
774 811 4.002982 TCCGTGGTGATTTCTGAATGAAG 58.997 43.478 0.00 0.00 35.89 3.02
929 966 1.617839 CCTTCCCTTCAGAGGCCCT 60.618 63.158 0.00 0.00 42.09 5.19
1058 1119 1.677552 CTACGAGGCCACCAAGGTT 59.322 57.895 5.01 0.00 40.61 3.50
1307 1374 4.157120 CCTTTCCCCGGCGTCGAT 62.157 66.667 12.93 0.00 39.00 3.59
1504 1589 2.590575 CTGCCGGTTTGTCCACGT 60.591 61.111 1.90 0.00 35.57 4.49
1534 1619 2.430921 CGTCACCGAGCAGGACAC 60.431 66.667 5.19 0.75 45.00 3.67
1687 1793 4.866327 ACCGATTTACCCCCAAAGATTA 57.134 40.909 0.00 0.00 0.00 1.75
1708 1814 8.237267 AGATTACATTTTTAGTTGCTCTTTCCG 58.763 33.333 0.00 0.00 0.00 4.30
1922 2031 2.022934 GTCCTCCTACTTCAGGTACCG 58.977 57.143 6.18 1.56 45.71 4.02
2223 2346 2.029073 CGACAGGTTCAGGCACGT 59.971 61.111 0.00 0.00 0.00 4.49
2263 2386 3.958147 ACATTTCCTTTTCCACTTTCCGT 59.042 39.130 0.00 0.00 0.00 4.69
2264 2387 4.404394 ACATTTCCTTTTCCACTTTCCGTT 59.596 37.500 0.00 0.00 0.00 4.44
2266 2389 1.679153 TCCTTTTCCACTTTCCGTTGC 59.321 47.619 0.00 0.00 0.00 4.17
2267 2390 1.681264 CCTTTTCCACTTTCCGTTGCT 59.319 47.619 0.00 0.00 0.00 3.91
2271 2400 0.250295 TCCACTTTCCGTTGCTGAGG 60.250 55.000 0.00 0.00 0.00 3.86
2279 2408 1.751351 TCCGTTGCTGAGGAGTAGATG 59.249 52.381 0.00 0.00 31.95 2.90
2370 2499 1.377994 CTGCAGGAAGTTCCAGGCT 59.622 57.895 28.21 7.67 39.61 4.58
2493 2623 0.109412 GCGCTGCTGCATTCTTCTTT 60.109 50.000 16.29 0.00 39.64 2.52
2520 2659 3.130340 GCCGATCACAAATTAATGGGTGT 59.870 43.478 15.45 6.72 33.17 4.16
2529 2668 3.799281 ATTAATGGGTGTTGCGATTGG 57.201 42.857 0.00 0.00 0.00 3.16
2669 2808 2.044650 GCTTCATGGGGCTGCAGA 60.045 61.111 20.43 0.00 0.00 4.26
2708 2847 2.284625 ACCACCATCTCGGCTCCA 60.285 61.111 0.00 0.00 39.03 3.86
2710 2849 2.362369 CCACCATCTCGGCTCCACT 61.362 63.158 0.00 0.00 39.03 4.00
2833 2972 7.345653 ACCTCTTGATCTTGACATGTTATCCTA 59.654 37.037 0.00 0.00 0.00 2.94
2862 3001 2.523440 CCATGGCATGGCAGGAAAT 58.477 52.632 32.39 11.04 44.70 2.17
2875 3019 4.040706 TGGCAGGAAATTTGCTCTTTGATT 59.959 37.500 9.53 0.00 41.27 2.57
2876 3020 4.390909 GGCAGGAAATTTGCTCTTTGATTG 59.609 41.667 9.53 0.00 41.27 2.67
2879 3023 6.035758 GCAGGAAATTTGCTCTTTGATTGATC 59.964 38.462 9.53 0.00 38.51 2.92
2887 3045 4.698780 TGCTCTTTGATTGATCACTTGGAG 59.301 41.667 0.00 0.37 36.36 3.86
2937 3095 1.686355 TTACTGTGGCTTGTGGTTGG 58.314 50.000 0.00 0.00 0.00 3.77
2938 3096 0.548989 TACTGTGGCTTGTGGTTGGT 59.451 50.000 0.00 0.00 0.00 3.67
2939 3097 0.548989 ACTGTGGCTTGTGGTTGGTA 59.451 50.000 0.00 0.00 0.00 3.25
3203 3364 2.116238 GGGGAAAGGAAATAAAGGGCC 58.884 52.381 0.00 0.00 0.00 5.80
3232 3393 7.254590 GCACACATAGCATAGGAGAAAGTAAAG 60.255 40.741 0.00 0.00 0.00 1.85
3261 3422 2.728318 GCTTGCTGCTTCTTACTTTTGC 59.272 45.455 0.00 0.00 38.95 3.68
3262 3423 3.311966 CTTGCTGCTTCTTACTTTTGCC 58.688 45.455 0.00 0.00 0.00 4.52
3263 3424 2.586425 TGCTGCTTCTTACTTTTGCCT 58.414 42.857 0.00 0.00 0.00 4.75
3264 3425 2.294233 TGCTGCTTCTTACTTTTGCCTG 59.706 45.455 0.00 0.00 0.00 4.85
3265 3426 2.924029 GCTGCTTCTTACTTTTGCCTGC 60.924 50.000 0.00 0.00 0.00 4.85
3266 3427 1.613437 TGCTTCTTACTTTTGCCTGCC 59.387 47.619 0.00 0.00 0.00 4.85
3432 3611 1.063717 CATAGGTTGCCCCTGATTGGT 60.064 52.381 2.37 0.00 45.81 3.67
3445 3624 3.056607 CCTGATTGGTGCTTAACAAAGGG 60.057 47.826 0.00 0.00 0.00 3.95
3535 3714 9.466497 TGATTTCTCAACTAATGGCTATTTTCT 57.534 29.630 0.00 0.00 0.00 2.52
3541 3720 8.752005 TCAACTAATGGCTATTTTCTATGCTT 57.248 30.769 0.00 0.00 0.00 3.91
3552 3731 5.512753 TTTTCTATGCTTGTTCTTGTGCA 57.487 34.783 0.00 0.00 39.83 4.57
3553 3732 5.512753 TTTCTATGCTTGTTCTTGTGCAA 57.487 34.783 0.00 0.00 38.96 4.08
3554 3733 4.754372 TCTATGCTTGTTCTTGTGCAAG 57.246 40.909 5.63 5.63 43.42 4.01
3557 3736 2.878580 TGCTTGTTCTTGTGCAAGTTG 58.121 42.857 11.17 0.00 42.76 3.16
3559 3738 2.599973 GCTTGTTCTTGTGCAAGTTGTG 59.400 45.455 11.17 2.48 42.76 3.33
3572 3751 3.637432 CAAGTTGTGCCTTATTTTCGCA 58.363 40.909 0.00 0.00 0.00 5.10
3573 3752 3.559238 AGTTGTGCCTTATTTTCGCAG 57.441 42.857 0.00 0.00 32.08 5.18
3574 3753 2.228822 AGTTGTGCCTTATTTTCGCAGG 59.771 45.455 0.00 0.00 32.08 4.85
3589 3768 8.594881 ATTTTCGCAGGATTGTTATACTAGAG 57.405 34.615 0.00 0.00 0.00 2.43
3590 3769 6.710597 TTCGCAGGATTGTTATACTAGAGT 57.289 37.500 0.00 0.00 0.00 3.24
3591 3770 6.073327 TCGCAGGATTGTTATACTAGAGTG 57.927 41.667 0.00 0.00 0.00 3.51
3592 3771 5.593095 TCGCAGGATTGTTATACTAGAGTGT 59.407 40.000 0.00 0.00 0.00 3.55
3593 3772 6.096423 TCGCAGGATTGTTATACTAGAGTGTT 59.904 38.462 0.00 0.00 0.00 3.32
3691 3870 2.655090 TTGCATCTCCCACAAAGACA 57.345 45.000 0.00 0.00 0.00 3.41
3697 3876 3.492102 TCTCCCACAAAGACAAAGGAG 57.508 47.619 0.00 0.00 41.88 3.69
3707 3886 0.892814 GACAAAGGAGGCTGCTGCTT 60.893 55.000 10.05 7.86 39.59 3.91
3750 3929 1.078285 TCGCTGGCAGCATCATGAA 60.078 52.632 35.94 11.34 42.58 2.57
3793 3978 1.000506 GTGGCCTCGTCTCTGTTTACA 59.999 52.381 3.32 0.00 0.00 2.41
3850 4035 1.604593 CTTCCAAGTGCCCAGGTGG 60.605 63.158 0.00 0.00 37.09 4.61
3863 4048 3.091633 CCAGGTGGGAGAAACATCAAT 57.908 47.619 0.00 0.00 40.01 2.57
3866 4051 4.324563 CCAGGTGGGAGAAACATCAATACT 60.325 45.833 0.00 0.00 40.01 2.12
3873 4058 8.360390 GTGGGAGAAACATCAATACTTTTCTTT 58.640 33.333 0.00 0.00 38.20 2.52
3875 4060 7.329471 GGGAGAAACATCAATACTTTTCTTTGC 59.671 37.037 0.00 0.00 38.20 3.68
3878 4063 9.822185 AGAAACATCAATACTTTTCTTTGCTTT 57.178 25.926 0.00 0.00 35.26 3.51
3940 4125 9.842775 ATTATGAATATCTGATGTGTGTGTTCT 57.157 29.630 0.00 0.00 0.00 3.01
3966 4151 1.566298 GGTTCTCTCCTGGCCATGGT 61.566 60.000 14.67 0.00 0.00 3.55
4038 4223 7.094118 CTCTTAAGCAGAGTAAGTAGACCACTT 60.094 40.741 0.00 0.00 44.07 3.16
4069 4304 3.866910 CCAAGCCATTATGATGCAAACAC 59.133 43.478 0.00 0.00 31.67 3.32
4073 4308 4.097437 AGCCATTATGATGCAAACACAGAG 59.903 41.667 0.00 0.00 31.67 3.35
4075 4310 4.142337 CCATTATGATGCAAACACAGAGCA 60.142 41.667 0.00 0.00 43.14 4.26
4076 4311 5.404096 CATTATGATGCAAACACAGAGCAA 58.596 37.500 0.00 0.00 42.15 3.91
4097 4333 1.134946 GCCCTGATGGTTATGTTGTGC 59.865 52.381 0.00 0.00 36.04 4.57
4098 4334 2.445427 CCCTGATGGTTATGTTGTGCA 58.555 47.619 0.00 0.00 0.00 4.57
4136 4373 0.036732 GCACCCCATGAAGTGAGTGA 59.963 55.000 16.48 0.00 36.01 3.41
4191 4428 1.152567 ATCCCGAGAGAGGAGCAGG 60.153 63.158 0.00 0.00 36.67 4.85
4227 4470 4.526970 ACAGCAACAGAAGAAAGGAAAGA 58.473 39.130 0.00 0.00 0.00 2.52
4278 4521 5.582665 CCAGCCTTAATTAAGTCAGTCAGTC 59.417 44.000 20.99 4.07 0.00 3.51
4279 4522 6.166279 CAGCCTTAATTAAGTCAGTCAGTCA 58.834 40.000 20.99 0.00 0.00 3.41
4280 4523 6.312426 CAGCCTTAATTAAGTCAGTCAGTCAG 59.688 42.308 20.99 5.25 0.00 3.51
4281 4524 6.014156 AGCCTTAATTAAGTCAGTCAGTCAGT 60.014 38.462 20.99 0.00 0.00 3.41
4282 4525 6.311690 GCCTTAATTAAGTCAGTCAGTCAGTC 59.688 42.308 20.99 0.00 0.00 3.51
4283 4526 7.378966 CCTTAATTAAGTCAGTCAGTCAGTCA 58.621 38.462 20.99 0.00 0.00 3.41
4284 4527 7.543868 CCTTAATTAAGTCAGTCAGTCAGTCAG 59.456 40.741 20.99 0.00 0.00 3.51
4285 4528 6.412362 AATTAAGTCAGTCAGTCAGTCAGT 57.588 37.500 0.00 0.00 0.00 3.41
4354 4597 6.466885 TGCTCCAAGAAGTAGTAGTAATCC 57.533 41.667 0.00 0.00 0.00 3.01
4371 4614 9.930693 GTAGTAATCCAGAAGAAGAAGAAGAAA 57.069 33.333 0.00 0.00 0.00 2.52
4373 4616 9.278978 AGTAATCCAGAAGAAGAAGAAGAAAAC 57.721 33.333 0.00 0.00 0.00 2.43
4374 4617 9.278978 GTAATCCAGAAGAAGAAGAAGAAAACT 57.721 33.333 0.00 0.00 0.00 2.66
4375 4618 7.742556 ATCCAGAAGAAGAAGAAGAAAACTG 57.257 36.000 0.00 0.00 0.00 3.16
4376 4619 6.653989 TCCAGAAGAAGAAGAAGAAAACTGT 58.346 36.000 0.00 0.00 0.00 3.55
4451 4715 2.945080 TGGATGGATCTCAGAATGGC 57.055 50.000 0.00 0.00 36.16 4.40
4564 4833 5.235186 CAGATATCGAAAGCAAACAGGTAGG 59.765 44.000 0.00 0.00 0.00 3.18
4565 4834 1.519408 TCGAAAGCAAACAGGTAGGC 58.481 50.000 0.00 0.00 0.00 3.93
4566 4837 0.165944 CGAAAGCAAACAGGTAGGCG 59.834 55.000 0.00 0.00 0.00 5.52
4578 4849 0.470766 GGTAGGCGGAGAGAGAGAGA 59.529 60.000 0.00 0.00 0.00 3.10
4579 4850 1.542547 GGTAGGCGGAGAGAGAGAGAG 60.543 61.905 0.00 0.00 0.00 3.20
4580 4851 1.414919 GTAGGCGGAGAGAGAGAGAGA 59.585 57.143 0.00 0.00 0.00 3.10
4581 4852 0.469917 AGGCGGAGAGAGAGAGAGAG 59.530 60.000 0.00 0.00 0.00 3.20
4582 4853 0.468226 GGCGGAGAGAGAGAGAGAGA 59.532 60.000 0.00 0.00 0.00 3.10
4583 4854 1.541233 GGCGGAGAGAGAGAGAGAGAG 60.541 61.905 0.00 0.00 0.00 3.20
4765 5065 3.256631 GTCAAAATGGACAAGGTCATGCT 59.743 43.478 0.00 0.00 37.73 3.79
4766 5066 4.458989 GTCAAAATGGACAAGGTCATGCTA 59.541 41.667 0.00 0.00 37.73 3.49
4767 5067 4.701651 TCAAAATGGACAAGGTCATGCTAG 59.298 41.667 0.00 0.00 33.68 3.42
4808 5114 6.939132 CATCCTCTGCATCTTACATTTTCT 57.061 37.500 0.00 0.00 0.00 2.52
4809 5115 7.330900 CATCCTCTGCATCTTACATTTTCTT 57.669 36.000 0.00 0.00 0.00 2.52
4810 5116 6.992063 TCCTCTGCATCTTACATTTTCTTC 57.008 37.500 0.00 0.00 0.00 2.87
4811 5117 5.882557 TCCTCTGCATCTTACATTTTCTTCC 59.117 40.000 0.00 0.00 0.00 3.46
4814 5120 7.094032 CCTCTGCATCTTACATTTTCTTCCTTT 60.094 37.037 0.00 0.00 0.00 3.11
4815 5121 8.862325 TCTGCATCTTACATTTTCTTCCTTTA 57.138 30.769 0.00 0.00 0.00 1.85
4855 5161 8.092687 CCTTTTCAACATCCTTTTCATCATTCT 58.907 33.333 0.00 0.00 0.00 2.40
4856 5162 9.485206 CTTTTCAACATCCTTTTCATCATTCTT 57.515 29.630 0.00 0.00 0.00 2.52
4897 5203 7.869800 AGTCTGAATCAAAAATCTGAACTGAC 58.130 34.615 0.00 0.00 36.34 3.51
4900 5206 6.891624 TGAATCAAAAATCTGAACTGACGAG 58.108 36.000 0.00 0.00 0.00 4.18
4901 5207 6.705825 TGAATCAAAAATCTGAACTGACGAGA 59.294 34.615 0.00 0.00 0.00 4.04
4902 5208 7.226523 TGAATCAAAAATCTGAACTGACGAGAA 59.773 33.333 0.00 0.00 0.00 2.87
4903 5209 6.918892 TCAAAAATCTGAACTGACGAGAAA 57.081 33.333 0.00 0.00 0.00 2.52
4904 5210 6.948353 TCAAAAATCTGAACTGACGAGAAAG 58.052 36.000 0.00 0.00 0.00 2.62
4905 5211 6.761242 TCAAAAATCTGAACTGACGAGAAAGA 59.239 34.615 0.00 0.00 0.00 2.52
4906 5212 6.777526 AAAATCTGAACTGACGAGAAAGAG 57.222 37.500 0.00 0.00 0.00 2.85
4907 5213 3.924918 TCTGAACTGACGAGAAAGAGG 57.075 47.619 0.00 0.00 0.00 3.69
4908 5214 2.029828 TCTGAACTGACGAGAAAGAGGC 60.030 50.000 0.00 0.00 0.00 4.70
4909 5215 1.000955 TGAACTGACGAGAAAGAGGCC 59.999 52.381 0.00 0.00 0.00 5.19
4910 5216 1.000955 GAACTGACGAGAAAGAGGCCA 59.999 52.381 5.01 0.00 0.00 5.36
4911 5217 1.048601 ACTGACGAGAAAGAGGCCAA 58.951 50.000 5.01 0.00 0.00 4.52
4912 5218 1.270358 ACTGACGAGAAAGAGGCCAAC 60.270 52.381 5.01 0.00 0.00 3.77
4913 5219 1.001406 CTGACGAGAAAGAGGCCAACT 59.999 52.381 5.01 0.00 0.00 3.16
4914 5220 1.000955 TGACGAGAAAGAGGCCAACTC 59.999 52.381 5.01 5.10 46.98 3.01
4921 5227 4.329545 GAGGCCAACTCCACCGCA 62.330 66.667 5.01 0.00 40.49 5.69
4922 5228 3.628646 GAGGCCAACTCCACCGCAT 62.629 63.158 5.01 0.00 40.49 4.73
4923 5229 3.443045 GGCCAACTCCACCGCATG 61.443 66.667 0.00 0.00 0.00 4.06
4931 5237 2.044451 CCACCGCATGGCCCTAAA 60.044 61.111 0.00 0.00 43.24 1.85
4932 5238 2.414785 CCACCGCATGGCCCTAAAC 61.415 63.158 0.00 0.00 43.24 2.01
4933 5239 2.437716 ACCGCATGGCCCTAAACG 60.438 61.111 0.00 0.00 39.70 3.60
4934 5240 3.209097 CCGCATGGCCCTAAACGG 61.209 66.667 0.00 2.39 0.00 4.44
4935 5241 2.124901 CGCATGGCCCTAAACGGA 60.125 61.111 0.00 0.00 33.16 4.69
4936 5242 2.469516 CGCATGGCCCTAAACGGAC 61.470 63.158 0.00 0.00 33.16 4.79
4937 5243 2.469516 GCATGGCCCTAAACGGACG 61.470 63.158 0.00 0.00 31.06 4.79
4938 5244 1.078708 CATGGCCCTAAACGGACGT 60.079 57.895 0.00 0.00 31.06 4.34
4939 5245 0.675522 CATGGCCCTAAACGGACGTT 60.676 55.000 0.00 3.99 40.45 3.99
4940 5246 0.392060 ATGGCCCTAAACGGACGTTC 60.392 55.000 10.76 0.00 37.35 3.95
4941 5247 2.096442 GGCCCTAAACGGACGTTCG 61.096 63.158 16.31 16.31 37.35 3.95
4942 5248 2.096442 GCCCTAAACGGACGTTCGG 61.096 63.158 22.31 13.28 37.35 4.30
4943 5249 1.586028 CCCTAAACGGACGTTCGGA 59.414 57.895 22.31 4.31 37.35 4.55
4944 5250 0.174162 CCCTAAACGGACGTTCGGAT 59.826 55.000 22.31 11.25 37.35 4.18
4945 5251 1.404583 CCCTAAACGGACGTTCGGATT 60.405 52.381 22.31 17.01 37.35 3.01
4946 5252 1.657094 CCTAAACGGACGTTCGGATTG 59.343 52.381 22.31 9.40 37.35 2.67
4947 5253 1.657094 CTAAACGGACGTTCGGATTGG 59.343 52.381 22.31 13.07 37.35 3.16
4948 5254 1.571215 AAACGGACGTTCGGATTGGC 61.571 55.000 22.31 0.00 37.35 4.52
4949 5255 3.192922 CGGACGTTCGGATTGGCC 61.193 66.667 8.83 0.00 0.00 5.36
4950 5256 2.046700 GGACGTTCGGATTGGCCA 60.047 61.111 0.00 0.00 35.94 5.36
4951 5257 2.106683 GGACGTTCGGATTGGCCAG 61.107 63.158 5.11 0.00 35.94 4.85
4952 5258 1.079405 GACGTTCGGATTGGCCAGA 60.079 57.895 5.11 0.00 35.94 3.86
4953 5259 0.462047 GACGTTCGGATTGGCCAGAT 60.462 55.000 5.11 2.42 35.94 2.90
4954 5260 0.035439 ACGTTCGGATTGGCCAGATT 60.035 50.000 5.11 0.00 35.94 2.40
4955 5261 1.094785 CGTTCGGATTGGCCAGATTT 58.905 50.000 5.11 0.00 35.94 2.17
4956 5262 1.472480 CGTTCGGATTGGCCAGATTTT 59.528 47.619 5.11 0.00 35.94 1.82
4957 5263 2.731968 CGTTCGGATTGGCCAGATTTTG 60.732 50.000 5.11 0.00 35.94 2.44
4958 5264 2.214376 TCGGATTGGCCAGATTTTGT 57.786 45.000 5.11 0.00 35.94 2.83
4959 5265 2.091541 TCGGATTGGCCAGATTTTGTC 58.908 47.619 5.11 0.00 35.94 3.18
4960 5266 1.134946 CGGATTGGCCAGATTTTGTCC 59.865 52.381 5.11 5.60 35.94 4.02
4961 5267 1.134946 GGATTGGCCAGATTTTGTCCG 59.865 52.381 5.11 0.00 36.34 4.79
4962 5268 1.818674 GATTGGCCAGATTTTGTCCGT 59.181 47.619 5.11 0.00 0.00 4.69
4963 5269 1.698506 TTGGCCAGATTTTGTCCGTT 58.301 45.000 5.11 0.00 0.00 4.44
4964 5270 1.698506 TGGCCAGATTTTGTCCGTTT 58.301 45.000 0.00 0.00 0.00 3.60
4965 5271 1.339610 TGGCCAGATTTTGTCCGTTTG 59.660 47.619 0.00 0.00 0.00 2.93
4966 5272 1.611491 GGCCAGATTTTGTCCGTTTGA 59.389 47.619 0.00 0.00 0.00 2.69
4967 5273 2.351738 GGCCAGATTTTGTCCGTTTGAG 60.352 50.000 0.00 0.00 0.00 3.02
4968 5274 2.351738 GCCAGATTTTGTCCGTTTGAGG 60.352 50.000 0.00 0.00 0.00 3.86
4969 5275 2.351738 CCAGATTTTGTCCGTTTGAGGC 60.352 50.000 0.00 0.00 0.00 4.70
4970 5276 1.535462 AGATTTTGTCCGTTTGAGGCG 59.465 47.619 0.00 0.00 0.00 5.52
4971 5277 1.265905 GATTTTGTCCGTTTGAGGCGT 59.734 47.619 0.00 0.00 0.00 5.68
4972 5278 0.658897 TTTTGTCCGTTTGAGGCGTC 59.341 50.000 0.00 0.00 0.00 5.19
4973 5279 1.492319 TTTGTCCGTTTGAGGCGTCG 61.492 55.000 1.39 0.00 0.00 5.12
4974 5280 2.049802 GTCCGTTTGAGGCGTCGA 60.050 61.111 0.00 0.00 0.00 4.20
4975 5281 1.445582 GTCCGTTTGAGGCGTCGAT 60.446 57.895 0.00 0.00 0.00 3.59
4976 5282 1.445410 TCCGTTTGAGGCGTCGATG 60.445 57.895 0.00 0.00 0.00 3.84
4977 5283 2.452813 CCGTTTGAGGCGTCGATGG 61.453 63.158 6.79 4.41 0.00 3.51
4978 5284 2.452813 CGTTTGAGGCGTCGATGGG 61.453 63.158 6.79 0.00 0.00 4.00
4979 5285 1.375523 GTTTGAGGCGTCGATGGGT 60.376 57.895 6.79 0.00 0.00 4.51
4980 5286 0.953960 GTTTGAGGCGTCGATGGGTT 60.954 55.000 6.79 0.00 0.00 4.11
4981 5287 0.672401 TTTGAGGCGTCGATGGGTTC 60.672 55.000 6.79 0.00 0.00 3.62
5008 5314 4.619227 CGGCTGTGTCCGTTGGGT 62.619 66.667 0.00 0.00 44.18 4.51
5009 5315 2.668550 GGCTGTGTCCGTTGGGTC 60.669 66.667 0.00 0.00 33.83 4.46
5010 5316 3.041940 GCTGTGTCCGTTGGGTCG 61.042 66.667 0.00 0.00 33.83 4.79
5011 5317 2.420043 CTGTGTCCGTTGGGTCGT 59.580 61.111 0.00 0.00 33.83 4.34
5012 5318 1.954146 CTGTGTCCGTTGGGTCGTG 60.954 63.158 0.00 0.00 33.83 4.35
5013 5319 3.343421 GTGTCCGTTGGGTCGTGC 61.343 66.667 0.00 0.00 33.83 5.34
5014 5320 4.953868 TGTCCGTTGGGTCGTGCG 62.954 66.667 0.00 0.00 33.83 5.34
5015 5321 4.955774 GTCCGTTGGGTCGTGCGT 62.956 66.667 0.00 0.00 33.83 5.24
5016 5322 4.953868 TCCGTTGGGTCGTGCGTG 62.954 66.667 0.00 0.00 33.83 5.34
5044 5350 3.758931 GTGGCCGCACCCCAAATC 61.759 66.667 12.58 0.00 37.83 2.17
5047 5353 4.114997 GCCGCACCCCAAATCGTG 62.115 66.667 0.00 0.00 0.00 4.35
5048 5354 2.671619 CCGCACCCCAAATCGTGT 60.672 61.111 0.00 0.00 32.40 4.49
5049 5355 2.686816 CCGCACCCCAAATCGTGTC 61.687 63.158 0.00 0.00 32.40 3.67
5050 5356 2.686816 CGCACCCCAAATCGTGTCC 61.687 63.158 0.00 0.00 32.40 4.02
5051 5357 2.686816 GCACCCCAAATCGTGTCCG 61.687 63.158 0.00 0.00 32.40 4.79
5052 5358 2.038269 CACCCCAAATCGTGTCCGG 61.038 63.158 0.00 0.00 33.95 5.14
5053 5359 2.437716 CCCCAAATCGTGTCCGGG 60.438 66.667 0.00 0.00 36.59 5.73
5054 5360 2.437716 CCCAAATCGTGTCCGGGG 60.438 66.667 0.00 0.00 32.88 5.73
5055 5361 2.349755 CCAAATCGTGTCCGGGGT 59.650 61.111 0.00 0.00 33.95 4.95
5056 5362 2.038269 CCAAATCGTGTCCGGGGTG 61.038 63.158 0.00 0.00 33.95 4.61
5057 5363 1.004320 CAAATCGTGTCCGGGGTGA 60.004 57.895 0.00 0.00 33.95 4.02
5058 5364 0.604243 CAAATCGTGTCCGGGGTGAA 60.604 55.000 0.00 0.00 33.95 3.18
5059 5365 0.604511 AAATCGTGTCCGGGGTGAAC 60.605 55.000 0.00 0.00 33.95 3.18
5060 5366 2.775032 AATCGTGTCCGGGGTGAACG 62.775 60.000 0.00 5.28 35.64 3.95
5068 5374 3.554962 CGGGGTGAACGGGAATAAA 57.445 52.632 0.00 0.00 0.00 1.40
5069 5375 1.823797 CGGGGTGAACGGGAATAAAA 58.176 50.000 0.00 0.00 0.00 1.52
5070 5376 2.161030 CGGGGTGAACGGGAATAAAAA 58.839 47.619 0.00 0.00 0.00 1.94
5139 5445 8.857694 AAACATAAAACATATATAGGGGTCGG 57.142 34.615 0.00 0.00 0.00 4.79
5140 5446 6.412214 ACATAAAACATATATAGGGGTCGGC 58.588 40.000 0.00 0.00 0.00 5.54
5141 5447 3.994931 AAACATATATAGGGGTCGGCC 57.005 47.619 0.00 0.00 0.00 6.13
5142 5448 2.634639 ACATATATAGGGGTCGGCCA 57.365 50.000 9.07 0.00 36.17 5.36
5143 5449 2.185387 ACATATATAGGGGTCGGCCAC 58.815 52.381 9.07 3.04 38.88 5.01
5144 5450 2.184533 CATATATAGGGGTCGGCCACA 58.815 52.381 12.87 0.00 41.86 4.17
5145 5451 2.402182 TATATAGGGGTCGGCCACAA 57.598 50.000 12.87 0.00 41.86 3.33
5146 5452 1.513858 ATATAGGGGTCGGCCACAAA 58.486 50.000 12.87 0.00 41.86 2.83
5147 5453 1.287217 TATAGGGGTCGGCCACAAAA 58.713 50.000 12.87 0.00 41.86 2.44
5148 5454 0.323087 ATAGGGGTCGGCCACAAAAC 60.323 55.000 12.87 0.00 41.86 2.43
5149 5455 2.734948 TAGGGGTCGGCCACAAAACG 62.735 60.000 12.87 0.00 41.86 3.60
5150 5456 2.592287 GGGTCGGCCACAAAACGA 60.592 61.111 9.07 0.00 36.17 3.85
5153 5459 2.592287 TCGGCCACAAAACGACCC 60.592 61.111 2.24 0.00 0.00 4.46
5154 5460 2.902846 CGGCCACAAAACGACCCA 60.903 61.111 2.24 0.00 0.00 4.51
5155 5461 2.903547 CGGCCACAAAACGACCCAG 61.904 63.158 2.24 0.00 0.00 4.45
5156 5462 1.826487 GGCCACAAAACGACCCAGT 60.826 57.895 0.00 0.00 0.00 4.00
5157 5463 1.388837 GGCCACAAAACGACCCAGTT 61.389 55.000 0.00 0.00 35.59 3.16
5158 5464 0.458260 GCCACAAAACGACCCAGTTT 59.542 50.000 0.00 0.00 45.21 2.66
5159 5465 1.535226 GCCACAAAACGACCCAGTTTC 60.535 52.381 0.00 0.00 42.81 2.78
5160 5466 1.746220 CCACAAAACGACCCAGTTTCA 59.254 47.619 0.00 0.00 42.81 2.69
5161 5467 2.164624 CCACAAAACGACCCAGTTTCAA 59.835 45.455 0.00 0.00 42.81 2.69
5162 5468 3.175929 CACAAAACGACCCAGTTTCAAC 58.824 45.455 0.00 0.00 42.81 3.18
5163 5469 2.159490 ACAAAACGACCCAGTTTCAACG 60.159 45.455 0.00 0.00 42.81 4.10
5164 5470 1.018910 AAACGACCCAGTTTCAACGG 58.981 50.000 0.00 0.00 39.90 4.44
5165 5471 1.441732 AACGACCCAGTTTCAACGGC 61.442 55.000 0.00 0.00 0.00 5.68
5166 5472 2.613506 CGACCCAGTTTCAACGGCC 61.614 63.158 0.00 0.00 0.00 6.13
5167 5473 1.527380 GACCCAGTTTCAACGGCCA 60.527 57.895 2.24 0.00 0.00 5.36
5168 5474 1.792118 GACCCAGTTTCAACGGCCAC 61.792 60.000 2.24 0.00 0.00 5.01
5169 5475 1.528309 CCCAGTTTCAACGGCCACT 60.528 57.895 2.24 0.00 0.00 4.00
5170 5476 1.106944 CCCAGTTTCAACGGCCACTT 61.107 55.000 2.24 0.00 0.00 3.16
5171 5477 1.600023 CCAGTTTCAACGGCCACTTA 58.400 50.000 2.24 0.00 0.00 2.24
5172 5478 1.950909 CCAGTTTCAACGGCCACTTAA 59.049 47.619 2.24 0.00 0.00 1.85
5173 5479 2.359531 CCAGTTTCAACGGCCACTTAAA 59.640 45.455 2.24 0.00 0.00 1.52
5174 5480 3.181485 CCAGTTTCAACGGCCACTTAAAA 60.181 43.478 2.24 0.00 0.00 1.52
5175 5481 4.041723 CAGTTTCAACGGCCACTTAAAAG 58.958 43.478 2.24 0.00 0.00 2.27
5176 5482 3.067601 AGTTTCAACGGCCACTTAAAAGG 59.932 43.478 2.24 0.00 0.00 3.11
5182 5488 3.051617 GCCACTTAAAAGGCCCAGT 57.948 52.632 0.00 0.00 45.18 4.00
5183 5489 1.338107 GCCACTTAAAAGGCCCAGTT 58.662 50.000 0.00 0.00 45.18 3.16
5184 5490 1.691976 GCCACTTAAAAGGCCCAGTTT 59.308 47.619 0.00 0.00 45.18 2.66
5185 5491 2.288825 GCCACTTAAAAGGCCCAGTTTC 60.289 50.000 0.00 0.00 45.18 2.78
5186 5492 2.962421 CCACTTAAAAGGCCCAGTTTCA 59.038 45.455 0.00 0.00 0.00 2.69
5187 5493 3.578282 CCACTTAAAAGGCCCAGTTTCAT 59.422 43.478 0.00 0.00 0.00 2.57
5188 5494 4.770010 CCACTTAAAAGGCCCAGTTTCATA 59.230 41.667 0.00 0.00 0.00 2.15
5189 5495 5.245075 CCACTTAAAAGGCCCAGTTTCATAA 59.755 40.000 0.00 0.00 0.00 1.90
5190 5496 6.070824 CCACTTAAAAGGCCCAGTTTCATAAT 60.071 38.462 0.00 0.00 0.00 1.28
5191 5497 7.386059 CACTTAAAAGGCCCAGTTTCATAATT 58.614 34.615 0.00 0.00 0.00 1.40
5192 5498 8.527810 CACTTAAAAGGCCCAGTTTCATAATTA 58.472 33.333 0.00 0.00 0.00 1.40
5193 5499 9.095700 ACTTAAAAGGCCCAGTTTCATAATTAA 57.904 29.630 0.00 0.00 0.00 1.40
5194 5500 9.366216 CTTAAAAGGCCCAGTTTCATAATTAAC 57.634 33.333 0.00 0.00 0.00 2.01
5195 5501 6.926630 AAAGGCCCAGTTTCATAATTAACA 57.073 33.333 0.00 0.00 0.00 2.41
5196 5502 7.494922 AAAGGCCCAGTTTCATAATTAACAT 57.505 32.000 0.00 0.00 0.00 2.71
5197 5503 8.602472 AAAGGCCCAGTTTCATAATTAACATA 57.398 30.769 0.00 0.00 0.00 2.29
5198 5504 8.602472 AAGGCCCAGTTTCATAATTAACATAA 57.398 30.769 0.00 0.00 0.00 1.90
5199 5505 8.782137 AGGCCCAGTTTCATAATTAACATAAT 57.218 30.769 0.00 0.00 0.00 1.28
5200 5506 9.875708 AGGCCCAGTTTCATAATTAACATAATA 57.124 29.630 0.00 0.00 0.00 0.98
5228 5534 6.806120 AATAAAATAAAAATCGTCCTGCGC 57.194 33.333 0.00 0.00 41.07 6.09
5229 5535 2.452006 AATAAAAATCGTCCTGCGCG 57.548 45.000 0.00 0.00 41.07 6.86
5230 5536 0.027586 ATAAAAATCGTCCTGCGCGC 59.972 50.000 27.26 27.26 41.07 6.86
5231 5537 1.017177 TAAAAATCGTCCTGCGCGCT 61.017 50.000 33.29 6.82 41.07 5.92
5232 5538 2.240612 AAAAATCGTCCTGCGCGCTC 62.241 55.000 33.29 17.84 41.07 5.03
5258 5564 4.719369 GCCGTCGCCGTCTTCACT 62.719 66.667 0.00 0.00 0.00 3.41
5259 5565 2.805353 CCGTCGCCGTCTTCACTG 60.805 66.667 0.00 0.00 0.00 3.66
5260 5566 2.805353 CGTCGCCGTCTTCACTGG 60.805 66.667 0.00 0.00 0.00 4.00
5261 5567 3.112709 GTCGCCGTCTTCACTGGC 61.113 66.667 0.00 0.00 45.39 4.85
5262 5568 4.373116 TCGCCGTCTTCACTGGCC 62.373 66.667 0.00 0.00 46.12 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 88 6.607689 TGAGGCTTTGTCATAAATAACAACG 58.392 36.000 0.00 0.00 35.24 4.10
118 120 3.891056 GTGTTTATACGCCAATAGCCC 57.109 47.619 0.00 0.00 38.78 5.19
202 204 2.027214 GTGCGACGGTTATACTTTGACG 59.973 50.000 0.00 0.00 0.00 4.35
285 289 0.320160 CAGCAGTGACAGCTAGTGCA 60.320 55.000 15.43 0.00 44.83 4.57
441 445 8.547967 ACTTCATCGTAAATAACAGTGACAAT 57.452 30.769 0.00 0.00 0.00 2.71
482 486 6.033831 GCACAATGTTACATGTTGCATTAGTC 59.966 38.462 20.06 11.91 31.29 2.59
489 493 3.379240 TGTGCACAATGTTACATGTTGC 58.621 40.909 19.28 18.85 0.00 4.17
490 494 5.164167 CGATTGTGCACAATGTTACATGTTG 60.164 40.000 41.64 20.26 45.72 3.33
523 533 3.858135 AGTTTAGGTTCTCACTCCTCCA 58.142 45.455 0.00 0.00 35.51 3.86
528 538 6.802834 CGAGTCTTTAGTTTAGGTTCTCACTC 59.197 42.308 0.00 0.00 0.00 3.51
530 540 5.345472 GCGAGTCTTTAGTTTAGGTTCTCAC 59.655 44.000 0.00 0.00 0.00 3.51
531 541 5.010314 TGCGAGTCTTTAGTTTAGGTTCTCA 59.990 40.000 0.00 0.00 0.00 3.27
532 542 5.467705 TGCGAGTCTTTAGTTTAGGTTCTC 58.532 41.667 0.00 0.00 0.00 2.87
534 544 5.388164 CGTTGCGAGTCTTTAGTTTAGGTTC 60.388 44.000 0.00 0.00 0.00 3.62
535 545 4.446719 CGTTGCGAGTCTTTAGTTTAGGTT 59.553 41.667 0.00 0.00 0.00 3.50
536 546 3.985925 CGTTGCGAGTCTTTAGTTTAGGT 59.014 43.478 0.00 0.00 0.00 3.08
538 548 3.181533 GCCGTTGCGAGTCTTTAGTTTAG 60.182 47.826 0.00 0.00 0.00 1.85
539 549 2.733026 GCCGTTGCGAGTCTTTAGTTTA 59.267 45.455 0.00 0.00 0.00 2.01
540 550 1.529865 GCCGTTGCGAGTCTTTAGTTT 59.470 47.619 0.00 0.00 0.00 2.66
541 551 1.145803 GCCGTTGCGAGTCTTTAGTT 58.854 50.000 0.00 0.00 0.00 2.24
542 552 2.823628 GCCGTTGCGAGTCTTTAGT 58.176 52.632 0.00 0.00 0.00 2.24
553 563 0.793861 TCACAATAGTTCGCCGTTGC 59.206 50.000 0.00 0.00 0.00 4.17
593 604 2.882137 CAACCAAATGTTAGTGGGACGT 59.118 45.455 0.00 0.00 39.39 4.34
628 639 7.437862 TCTTGTAGGCATGTTTGATTTGTTTTC 59.562 33.333 0.00 0.00 0.00 2.29
633 644 6.311935 CCAATCTTGTAGGCATGTTTGATTTG 59.688 38.462 0.00 0.00 34.27 2.32
683 694 8.494347 CGAGGCAAAAATTTATCATGTTTCAAA 58.506 29.630 0.00 0.00 0.00 2.69
684 695 7.869937 TCGAGGCAAAAATTTATCATGTTTCAA 59.130 29.630 0.00 0.00 0.00 2.69
685 696 7.374272 TCGAGGCAAAAATTTATCATGTTTCA 58.626 30.769 0.00 0.00 0.00 2.69
686 697 7.810766 TCGAGGCAAAAATTTATCATGTTTC 57.189 32.000 0.00 0.00 0.00 2.78
687 698 7.492344 GGATCGAGGCAAAAATTTATCATGTTT 59.508 33.333 0.00 0.00 0.00 2.83
688 699 6.980397 GGATCGAGGCAAAAATTTATCATGTT 59.020 34.615 0.00 0.00 0.00 2.71
689 700 6.096705 TGGATCGAGGCAAAAATTTATCATGT 59.903 34.615 0.00 0.00 0.00 3.21
690 701 6.506147 TGGATCGAGGCAAAAATTTATCATG 58.494 36.000 0.00 0.00 0.00 3.07
691 702 6.239120 CCTGGATCGAGGCAAAAATTTATCAT 60.239 38.462 11.18 0.00 0.00 2.45
692 703 5.067674 CCTGGATCGAGGCAAAAATTTATCA 59.932 40.000 11.18 0.00 0.00 2.15
693 704 5.067805 ACCTGGATCGAGGCAAAAATTTATC 59.932 40.000 22.58 0.00 36.46 1.75
694 705 4.956075 ACCTGGATCGAGGCAAAAATTTAT 59.044 37.500 22.58 0.00 36.46 1.40
695 706 4.157656 CACCTGGATCGAGGCAAAAATTTA 59.842 41.667 22.58 0.00 36.46 1.40
699 726 1.202879 ACACCTGGATCGAGGCAAAAA 60.203 47.619 22.58 0.00 36.46 1.94
752 789 3.694043 TCATTCAGAAATCACCACGGA 57.306 42.857 0.00 0.00 0.00 4.69
760 797 3.428589 GGTGCCTGCTTCATTCAGAAATC 60.429 47.826 0.00 0.00 35.40 2.17
929 966 4.798682 GGAGGGGGAGCGGAAGGA 62.799 72.222 0.00 0.00 0.00 3.36
1307 1374 2.707849 GCCTTCGTACCTCGCCTGA 61.708 63.158 0.00 0.00 39.67 3.86
1441 1526 2.522638 GCGTAGTACATGCACGGCC 61.523 63.158 0.38 0.00 39.15 6.13
1504 1589 2.523168 TGACGTGGTCAGGCAGGA 60.523 61.111 0.00 0.00 37.67 3.86
1534 1619 4.796231 CCGCCGTCCAGACTTCCG 62.796 72.222 0.00 0.00 0.00 4.30
1687 1793 4.583073 ACCGGAAAGAGCAACTAAAAATGT 59.417 37.500 9.46 0.00 0.00 2.71
1695 1801 0.685097 TAGCACCGGAAAGAGCAACT 59.315 50.000 9.46 0.00 0.00 3.16
1708 1814 4.517075 GGAATAGCAAGGAAGATTAGCACC 59.483 45.833 0.00 0.00 0.00 5.01
2241 2364 3.958147 ACGGAAAGTGGAAAAGGAAATGT 59.042 39.130 0.00 0.00 0.00 2.71
2263 2386 3.582647 TGAAACCATCTACTCCTCAGCAA 59.417 43.478 0.00 0.00 0.00 3.91
2264 2387 3.173151 TGAAACCATCTACTCCTCAGCA 58.827 45.455 0.00 0.00 0.00 4.41
2266 2389 5.413309 AACTGAAACCATCTACTCCTCAG 57.587 43.478 0.00 0.00 35.92 3.35
2267 2390 6.928348 TTAACTGAAACCATCTACTCCTCA 57.072 37.500 0.00 0.00 0.00 3.86
2271 2400 8.560374 GCCATTATTAACTGAAACCATCTACTC 58.440 37.037 0.00 0.00 0.00 2.59
2279 2408 5.914898 ACCTGCCATTATTAACTGAAACC 57.085 39.130 0.00 0.00 0.00 3.27
2493 2623 4.035091 CCATTAATTTGTGATCGGCGAGAA 59.965 41.667 17.22 2.45 0.00 2.87
2520 2659 0.958091 CCCTGACAAACCAATCGCAA 59.042 50.000 0.00 0.00 0.00 4.85
2529 2668 1.026718 CATCCTCGGCCCTGACAAAC 61.027 60.000 0.00 0.00 0.00 2.93
2669 2808 1.490574 CCCCTCTTGAGGTCGAGAAT 58.509 55.000 14.77 0.00 36.04 2.40
2771 2910 0.106868 TGGATTGCAGCATCCTCCAG 60.107 55.000 16.58 0.00 37.81 3.86
2860 2999 6.872020 CCAAGTGATCAATCAAAGAGCAAATT 59.128 34.615 0.00 0.00 38.75 1.82
2862 3001 5.535783 TCCAAGTGATCAATCAAAGAGCAAA 59.464 36.000 0.00 0.00 38.75 3.68
2875 3019 7.124750 TCAGTGATATTTCTCTCCAAGTGATCA 59.875 37.037 0.00 0.00 0.00 2.92
2876 3020 7.495901 TCAGTGATATTTCTCTCCAAGTGATC 58.504 38.462 0.00 0.00 0.00 2.92
2879 3023 7.270779 TGATCAGTGATATTTCTCTCCAAGTG 58.729 38.462 5.38 0.00 0.00 3.16
2887 3045 7.012138 ACAGCACATTGATCAGTGATATTTCTC 59.988 37.037 23.48 1.97 37.97 2.87
2937 3095 3.790091 TGCTCATCTTGTGATCTGCTAC 58.210 45.455 0.00 0.00 35.97 3.58
2938 3096 3.450096 ACTGCTCATCTTGTGATCTGCTA 59.550 43.478 0.00 0.00 35.97 3.49
2939 3097 2.236644 ACTGCTCATCTTGTGATCTGCT 59.763 45.455 0.00 0.00 35.97 4.24
3203 3364 0.392706 TCCTATGCTATGTGTGCCCG 59.607 55.000 0.00 0.00 0.00 6.13
3259 3420 2.642254 GCAATCAAGCAGGCAGGCA 61.642 57.895 0.00 0.00 35.83 4.75
3260 3421 1.885163 AAGCAATCAAGCAGGCAGGC 61.885 55.000 0.00 0.00 36.85 4.85
3261 3422 0.606604 AAAGCAATCAAGCAGGCAGG 59.393 50.000 0.00 0.00 36.85 4.85
3262 3423 2.029290 AGAAAAGCAATCAAGCAGGCAG 60.029 45.455 0.00 0.00 36.85 4.85
3263 3424 1.965643 AGAAAAGCAATCAAGCAGGCA 59.034 42.857 0.00 0.00 36.85 4.75
3264 3425 2.738013 AGAAAAGCAATCAAGCAGGC 57.262 45.000 0.00 0.00 36.85 4.85
3265 3426 4.217983 AGAGAAGAAAAGCAATCAAGCAGG 59.782 41.667 0.00 0.00 36.85 4.85
3266 3427 5.373981 AGAGAAGAAAAGCAATCAAGCAG 57.626 39.130 0.00 0.00 36.85 4.24
3432 3611 4.744795 TTCTTTTGCCCTTTGTTAAGCA 57.255 36.364 0.00 0.00 0.00 3.91
3534 3713 4.494350 ACTTGCACAAGAACAAGCATAG 57.506 40.909 16.95 0.00 45.74 2.23
3535 3714 4.097741 ACAACTTGCACAAGAACAAGCATA 59.902 37.500 16.95 0.00 45.74 3.14
3552 3731 3.305335 CCTGCGAAAATAAGGCACAACTT 60.305 43.478 0.00 0.00 32.46 2.66
3553 3732 2.228822 CCTGCGAAAATAAGGCACAACT 59.771 45.455 0.00 0.00 32.46 3.16
3554 3733 2.227865 TCCTGCGAAAATAAGGCACAAC 59.772 45.455 0.00 0.00 32.46 3.32
3557 3736 3.119495 ACAATCCTGCGAAAATAAGGCAC 60.119 43.478 0.00 0.00 32.46 5.01
3559 3738 3.782889 ACAATCCTGCGAAAATAAGGC 57.217 42.857 0.00 0.00 0.00 4.35
3563 3742 9.692749 CTCTAGTATAACAATCCTGCGAAAATA 57.307 33.333 0.00 0.00 0.00 1.40
3564 3743 8.204836 ACTCTAGTATAACAATCCTGCGAAAAT 58.795 33.333 0.00 0.00 0.00 1.82
3565 3744 7.491372 CACTCTAGTATAACAATCCTGCGAAAA 59.509 37.037 0.00 0.00 0.00 2.29
3566 3745 6.978659 CACTCTAGTATAACAATCCTGCGAAA 59.021 38.462 0.00 0.00 0.00 3.46
3568 3747 5.593095 ACACTCTAGTATAACAATCCTGCGA 59.407 40.000 0.00 0.00 0.00 5.10
3570 3749 7.466050 GCAAACACTCTAGTATAACAATCCTGC 60.466 40.741 0.00 0.00 0.00 4.85
3571 3750 7.766278 AGCAAACACTCTAGTATAACAATCCTG 59.234 37.037 0.00 0.00 0.00 3.86
3572 3751 7.852263 AGCAAACACTCTAGTATAACAATCCT 58.148 34.615 0.00 0.00 0.00 3.24
3573 3752 8.494016 AAGCAAACACTCTAGTATAACAATCC 57.506 34.615 0.00 0.00 0.00 3.01
3664 3843 0.918799 TGGGAGATGCAAAGGGGCTA 60.919 55.000 0.00 0.00 34.04 3.93
3691 3870 0.112025 AAGAAGCAGCAGCCTCCTTT 59.888 50.000 0.00 0.00 43.56 3.11
3697 3876 0.322366 AGGAAGAAGAAGCAGCAGCC 60.322 55.000 0.00 0.00 43.56 4.85
3707 3886 2.301296 CTGGTTCTGCAGAGGAAGAAGA 59.699 50.000 17.43 0.00 39.42 2.87
3739 3918 2.587956 CCGTTGTTGTTCATGATGCTG 58.412 47.619 0.00 0.00 0.00 4.41
3750 3929 2.594592 GAGGGCTGCCGTTGTTGT 60.595 61.111 15.88 0.00 0.00 3.32
3793 3978 1.228367 CAGCTCAAGGGCAGTTGGT 60.228 57.895 0.00 0.00 34.17 3.67
3850 4035 8.084684 AGCAAAGAAAAGTATTGATGTTTCTCC 58.915 33.333 0.00 0.00 38.94 3.71
3863 4048 8.522830 CATGGAAGGATAAAGCAAAGAAAAGTA 58.477 33.333 0.00 0.00 0.00 2.24
3866 4051 7.301868 ACATGGAAGGATAAAGCAAAGAAAA 57.698 32.000 0.00 0.00 0.00 2.29
3873 4058 4.706476 CCAAGAACATGGAAGGATAAAGCA 59.294 41.667 0.00 0.00 43.54 3.91
3875 4060 4.952335 AGCCAAGAACATGGAAGGATAAAG 59.048 41.667 0.00 0.00 43.54 1.85
3878 4063 3.266772 ACAGCCAAGAACATGGAAGGATA 59.733 43.478 0.00 0.00 43.54 2.59
3880 4065 1.425066 ACAGCCAAGAACATGGAAGGA 59.575 47.619 0.00 0.00 43.54 3.36
4030 4215 1.279496 TGGCTGCTGATAAGTGGTCT 58.721 50.000 0.00 0.00 0.00 3.85
4031 4216 2.012673 CTTGGCTGCTGATAAGTGGTC 58.987 52.381 0.00 0.00 0.00 4.02
4032 4217 1.952367 GCTTGGCTGCTGATAAGTGGT 60.952 52.381 0.00 0.00 0.00 4.16
4033 4218 0.737219 GCTTGGCTGCTGATAAGTGG 59.263 55.000 0.00 0.00 0.00 4.00
4034 4219 0.737219 GGCTTGGCTGCTGATAAGTG 59.263 55.000 0.00 0.00 0.00 3.16
4038 4223 3.151554 CATAATGGCTTGGCTGCTGATA 58.848 45.455 0.00 0.00 0.00 2.15
4046 4231 2.867975 GTTTGCATCATAATGGCTTGGC 59.132 45.455 0.00 0.00 33.19 4.52
4069 4304 0.323178 AACCATCAGGGCTTGCTCTG 60.323 55.000 15.75 15.75 42.05 3.35
4073 4308 1.767759 ACATAACCATCAGGGCTTGC 58.232 50.000 0.00 0.00 42.05 4.01
4075 4310 3.091545 CACAACATAACCATCAGGGCTT 58.908 45.455 0.00 0.00 42.05 4.35
4076 4311 2.726821 CACAACATAACCATCAGGGCT 58.273 47.619 0.00 0.00 42.05 5.19
4097 4333 1.197036 CTCATGGCTTCGCTGCATATG 59.803 52.381 0.00 0.00 33.42 1.78
4098 4334 1.520494 CTCATGGCTTCGCTGCATAT 58.480 50.000 0.00 0.00 34.04 1.78
4106 4342 2.825836 GGGGTGCTCATGGCTTCG 60.826 66.667 7.54 0.00 42.39 3.79
4136 4373 5.887754 TGTTAGAGCCTTTTACCTTCCATT 58.112 37.500 0.00 0.00 0.00 3.16
4191 4428 0.814457 TGCTGTTGTTGTTGGTGTCC 59.186 50.000 0.00 0.00 0.00 4.02
4227 4470 9.232473 CTAGAGCTAAAACAACCCTAGATTTTT 57.768 33.333 0.00 0.00 0.00 1.94
4236 4479 3.010420 CTGGCTAGAGCTAAAACAACCC 58.990 50.000 0.81 0.00 41.70 4.11
4354 4597 7.148340 ACACACAGTTTTCTTCTTCTTCTTCTG 60.148 37.037 0.00 0.00 0.00 3.02
4371 4614 4.342378 AGATAGACAGACACACACACAGTT 59.658 41.667 0.00 0.00 0.00 3.16
4373 4616 4.511617 AGATAGACAGACACACACACAG 57.488 45.455 0.00 0.00 0.00 3.66
4374 4617 4.340950 TGAAGATAGACAGACACACACACA 59.659 41.667 0.00 0.00 0.00 3.72
4375 4618 4.871513 TGAAGATAGACAGACACACACAC 58.128 43.478 0.00 0.00 0.00 3.82
4376 4619 5.473039 CATGAAGATAGACAGACACACACA 58.527 41.667 0.00 0.00 0.00 3.72
4451 4715 6.696148 GGTTCAGTTTACCACTACTATCATCG 59.304 42.308 0.00 0.00 35.67 3.84
4564 4833 1.541233 CCTCTCTCTCTCTCTCTCCGC 60.541 61.905 0.00 0.00 0.00 5.54
4565 4834 2.036475 CTCCTCTCTCTCTCTCTCTCCG 59.964 59.091 0.00 0.00 0.00 4.63
4566 4837 3.041946 ACTCCTCTCTCTCTCTCTCTCC 58.958 54.545 0.00 0.00 0.00 3.71
4578 4849 1.349357 GGCTTTTGTCCACTCCTCTCT 59.651 52.381 0.00 0.00 0.00 3.10
4579 4850 1.072331 TGGCTTTTGTCCACTCCTCTC 59.928 52.381 0.00 0.00 0.00 3.20
4580 4851 1.072965 CTGGCTTTTGTCCACTCCTCT 59.927 52.381 0.00 0.00 0.00 3.69
4581 4852 1.072331 TCTGGCTTTTGTCCACTCCTC 59.928 52.381 0.00 0.00 0.00 3.71
4582 4853 1.140312 TCTGGCTTTTGTCCACTCCT 58.860 50.000 0.00 0.00 0.00 3.69
4583 4854 1.239347 GTCTGGCTTTTGTCCACTCC 58.761 55.000 0.00 0.00 0.00 3.85
4765 5065 5.302059 GGATGCACATTGAGGAGTACTACTA 59.698 44.000 7.87 0.00 0.00 1.82
4766 5066 4.100189 GGATGCACATTGAGGAGTACTACT 59.900 45.833 7.55 7.55 0.00 2.57
4767 5067 4.100189 AGGATGCACATTGAGGAGTACTAC 59.900 45.833 0.00 0.00 0.00 2.73
4800 5106 7.078249 AGGGCAAAATAAAGGAAGAAAATGT 57.922 32.000 0.00 0.00 0.00 2.71
4801 5107 7.879677 AGAAGGGCAAAATAAAGGAAGAAAATG 59.120 33.333 0.00 0.00 0.00 2.32
4802 5108 7.977818 AGAAGGGCAAAATAAAGGAAGAAAAT 58.022 30.769 0.00 0.00 0.00 1.82
4808 5114 4.093743 GGGAGAAGGGCAAAATAAAGGAA 58.906 43.478 0.00 0.00 0.00 3.36
4809 5115 3.336694 AGGGAGAAGGGCAAAATAAAGGA 59.663 43.478 0.00 0.00 0.00 3.36
4810 5116 3.713003 AGGGAGAAGGGCAAAATAAAGG 58.287 45.455 0.00 0.00 0.00 3.11
4811 5117 5.745312 AAAGGGAGAAGGGCAAAATAAAG 57.255 39.130 0.00 0.00 0.00 1.85
4814 5120 4.746466 TGAAAAGGGAGAAGGGCAAAATA 58.254 39.130 0.00 0.00 0.00 1.40
4815 5121 3.586429 TGAAAAGGGAGAAGGGCAAAAT 58.414 40.909 0.00 0.00 0.00 1.82
4871 5177 8.993121 GTCAGTTCAGATTTTTGATTCAGACTA 58.007 33.333 0.00 0.00 0.00 2.59
4897 5203 0.321671 TGGAGTTGGCCTCTTTCTCG 59.678 55.000 3.32 0.00 40.30 4.04
4900 5206 0.955919 CGGTGGAGTTGGCCTCTTTC 60.956 60.000 3.32 0.00 40.30 2.62
4901 5207 1.073199 CGGTGGAGTTGGCCTCTTT 59.927 57.895 3.32 0.00 40.30 2.52
4902 5208 2.750350 CGGTGGAGTTGGCCTCTT 59.250 61.111 3.32 0.00 40.30 2.85
4903 5209 4.021925 GCGGTGGAGTTGGCCTCT 62.022 66.667 3.32 1.86 40.30 3.69
4904 5210 3.628646 ATGCGGTGGAGTTGGCCTC 62.629 63.158 3.32 0.00 39.67 4.70
4905 5211 3.650950 ATGCGGTGGAGTTGGCCT 61.651 61.111 3.32 0.00 0.00 5.19
4906 5212 3.443045 CATGCGGTGGAGTTGGCC 61.443 66.667 0.00 0.00 0.00 5.36
4915 5221 2.760159 CGTTTAGGGCCATGCGGTG 61.760 63.158 6.18 0.00 33.28 4.94
4916 5222 2.437716 CGTTTAGGGCCATGCGGT 60.438 61.111 6.18 0.00 33.28 5.68
4917 5223 3.209097 CCGTTTAGGGCCATGCGG 61.209 66.667 6.18 13.67 35.97 5.69
4918 5224 2.124901 TCCGTTTAGGGCCATGCG 60.125 61.111 6.18 4.34 41.52 4.73
4919 5225 2.469516 CGTCCGTTTAGGGCCATGC 61.470 63.158 6.18 0.00 43.19 4.06
4920 5226 0.675522 AACGTCCGTTTAGGGCCATG 60.676 55.000 6.18 0.00 43.19 3.66
4921 5227 0.392060 GAACGTCCGTTTAGGGCCAT 60.392 55.000 6.18 0.00 43.19 4.40
4922 5228 1.004679 GAACGTCCGTTTAGGGCCA 60.005 57.895 6.18 0.00 43.19 5.36
4923 5229 2.096442 CGAACGTCCGTTTAGGGCC 61.096 63.158 6.52 0.00 43.19 5.80
4924 5230 2.096442 CCGAACGTCCGTTTAGGGC 61.096 63.158 15.59 0.78 42.52 5.19
4925 5231 0.174162 ATCCGAACGTCCGTTTAGGG 59.826 55.000 20.11 15.37 41.52 3.53
4926 5232 1.657094 CAATCCGAACGTCCGTTTAGG 59.343 52.381 16.64 16.64 38.60 2.69
4927 5233 1.657094 CCAATCCGAACGTCCGTTTAG 59.343 52.381 6.52 4.56 38.60 1.85
4928 5234 1.712401 CCAATCCGAACGTCCGTTTA 58.288 50.000 6.52 0.00 38.60 2.01
4929 5235 1.571215 GCCAATCCGAACGTCCGTTT 61.571 55.000 6.52 0.00 38.60 3.60
4930 5236 2.030958 GCCAATCCGAACGTCCGTT 61.031 57.895 4.52 4.52 41.54 4.44
4931 5237 2.433664 GCCAATCCGAACGTCCGT 60.434 61.111 0.00 0.00 0.00 4.69
4932 5238 3.192922 GGCCAATCCGAACGTCCG 61.193 66.667 0.00 0.00 0.00 4.79
4933 5239 2.046700 TGGCCAATCCGAACGTCC 60.047 61.111 0.61 0.00 37.80 4.79
4934 5240 0.462047 ATCTGGCCAATCCGAACGTC 60.462 55.000 7.01 0.00 37.80 4.34
4935 5241 0.035439 AATCTGGCCAATCCGAACGT 60.035 50.000 7.01 0.00 37.80 3.99
4936 5242 1.094785 AAATCTGGCCAATCCGAACG 58.905 50.000 7.01 0.00 37.80 3.95
4937 5243 2.231235 ACAAAATCTGGCCAATCCGAAC 59.769 45.455 7.01 0.00 37.80 3.95
4938 5244 2.491693 GACAAAATCTGGCCAATCCGAA 59.508 45.455 7.01 0.00 37.80 4.30
4939 5245 2.091541 GACAAAATCTGGCCAATCCGA 58.908 47.619 7.01 0.00 37.80 4.55
4940 5246 2.566952 GACAAAATCTGGCCAATCCG 57.433 50.000 7.01 0.00 37.80 4.18
4947 5253 2.351738 CCTCAAACGGACAAAATCTGGC 60.352 50.000 0.00 0.00 38.12 4.85
4948 5254 2.351738 GCCTCAAACGGACAAAATCTGG 60.352 50.000 0.00 0.00 38.12 3.86
4949 5255 2.665519 CGCCTCAAACGGACAAAATCTG 60.666 50.000 0.00 0.00 39.92 2.90
4950 5256 1.535462 CGCCTCAAACGGACAAAATCT 59.465 47.619 0.00 0.00 0.00 2.40
4951 5257 1.265905 ACGCCTCAAACGGACAAAATC 59.734 47.619 0.00 0.00 34.00 2.17
4952 5258 1.265905 GACGCCTCAAACGGACAAAAT 59.734 47.619 0.00 0.00 34.00 1.82
4953 5259 0.658897 GACGCCTCAAACGGACAAAA 59.341 50.000 0.00 0.00 34.00 2.44
4954 5260 1.492319 CGACGCCTCAAACGGACAAA 61.492 55.000 0.00 0.00 34.00 2.83
4955 5261 1.952133 CGACGCCTCAAACGGACAA 60.952 57.895 0.00 0.00 34.00 3.18
4956 5262 2.149803 ATCGACGCCTCAAACGGACA 62.150 55.000 0.00 0.00 34.00 4.02
4957 5263 1.445582 ATCGACGCCTCAAACGGAC 60.446 57.895 0.00 0.00 34.00 4.79
4958 5264 1.445410 CATCGACGCCTCAAACGGA 60.445 57.895 0.00 0.00 34.00 4.69
4959 5265 2.452813 CCATCGACGCCTCAAACGG 61.453 63.158 0.00 0.00 34.00 4.44
4960 5266 2.452813 CCCATCGACGCCTCAAACG 61.453 63.158 0.00 0.00 0.00 3.60
4961 5267 0.953960 AACCCATCGACGCCTCAAAC 60.954 55.000 0.00 0.00 0.00 2.93
4962 5268 0.672401 GAACCCATCGACGCCTCAAA 60.672 55.000 0.00 0.00 0.00 2.69
4963 5269 1.079405 GAACCCATCGACGCCTCAA 60.079 57.895 0.00 0.00 0.00 3.02
4964 5270 2.577059 GAACCCATCGACGCCTCA 59.423 61.111 0.00 0.00 0.00 3.86
4992 5298 2.668550 GACCCAACGGACACAGCC 60.669 66.667 0.00 0.00 0.00 4.85
4993 5299 3.041940 CGACCCAACGGACACAGC 61.042 66.667 0.00 0.00 0.00 4.40
4994 5300 1.954146 CACGACCCAACGGACACAG 60.954 63.158 0.00 0.00 37.61 3.66
4995 5301 2.107343 CACGACCCAACGGACACA 59.893 61.111 0.00 0.00 37.61 3.72
4996 5302 3.343421 GCACGACCCAACGGACAC 61.343 66.667 0.00 0.00 37.61 3.67
4997 5303 4.953868 CGCACGACCCAACGGACA 62.954 66.667 0.00 0.00 37.61 4.02
4998 5304 4.955774 ACGCACGACCCAACGGAC 62.956 66.667 0.00 0.00 37.61 4.79
4999 5305 4.953868 CACGCACGACCCAACGGA 62.954 66.667 0.00 0.00 37.61 4.69
5027 5333 3.758931 GATTTGGGGTGCGGCCAC 61.759 66.667 2.24 0.00 42.43 5.01
5030 5336 4.114997 CACGATTTGGGGTGCGGC 62.115 66.667 0.00 0.00 0.00 6.53
5031 5337 2.671619 ACACGATTTGGGGTGCGG 60.672 61.111 0.00 0.00 37.68 5.69
5032 5338 2.686816 GGACACGATTTGGGGTGCG 61.687 63.158 0.00 0.00 37.68 5.34
5033 5339 2.686816 CGGACACGATTTGGGGTGC 61.687 63.158 0.00 0.00 44.60 5.01
5034 5340 2.038269 CCGGACACGATTTGGGGTG 61.038 63.158 0.00 0.00 44.60 4.61
5035 5341 2.349755 CCGGACACGATTTGGGGT 59.650 61.111 0.00 0.00 44.60 4.95
5036 5342 2.437716 CCCGGACACGATTTGGGG 60.438 66.667 0.73 0.00 44.60 4.96
5037 5343 2.437716 CCCCGGACACGATTTGGG 60.438 66.667 0.73 0.00 44.60 4.12
5038 5344 2.038269 CACCCCGGACACGATTTGG 61.038 63.158 0.73 0.00 44.60 3.28
5039 5345 0.604243 TTCACCCCGGACACGATTTG 60.604 55.000 0.73 0.00 44.60 2.32
5040 5346 0.604511 GTTCACCCCGGACACGATTT 60.605 55.000 0.73 0.00 44.60 2.17
5041 5347 1.004200 GTTCACCCCGGACACGATT 60.004 57.895 0.73 0.00 44.60 3.34
5042 5348 2.660802 GTTCACCCCGGACACGAT 59.339 61.111 0.73 0.00 44.60 3.73
5043 5349 3.980989 CGTTCACCCCGGACACGA 61.981 66.667 0.73 0.00 44.60 4.35
5049 5355 0.035247 TTTATTCCCGTTCACCCCGG 60.035 55.000 0.00 0.00 45.07 5.73
5050 5356 1.823797 TTTTATTCCCGTTCACCCCG 58.176 50.000 0.00 0.00 0.00 5.73
5113 5419 9.292195 CCGACCCCTATATATGTTTTATGTTTT 57.708 33.333 0.00 0.00 0.00 2.43
5114 5420 7.392393 GCCGACCCCTATATATGTTTTATGTTT 59.608 37.037 0.00 0.00 0.00 2.83
5115 5421 6.882678 GCCGACCCCTATATATGTTTTATGTT 59.117 38.462 0.00 0.00 0.00 2.71
5116 5422 6.412214 GCCGACCCCTATATATGTTTTATGT 58.588 40.000 0.00 0.00 0.00 2.29
5117 5423 5.820947 GGCCGACCCCTATATATGTTTTATG 59.179 44.000 0.00 0.00 0.00 1.90
5118 5424 5.489637 TGGCCGACCCCTATATATGTTTTAT 59.510 40.000 0.00 0.00 33.59 1.40
5119 5425 4.845225 TGGCCGACCCCTATATATGTTTTA 59.155 41.667 0.00 0.00 33.59 1.52
5120 5426 3.653836 TGGCCGACCCCTATATATGTTTT 59.346 43.478 0.00 0.00 33.59 2.43
5121 5427 3.008704 GTGGCCGACCCCTATATATGTTT 59.991 47.826 0.00 0.00 33.59 2.83
5122 5428 2.570302 GTGGCCGACCCCTATATATGTT 59.430 50.000 0.00 0.00 33.59 2.71
5123 5429 2.185387 GTGGCCGACCCCTATATATGT 58.815 52.381 0.00 0.00 33.59 2.29
5124 5430 2.184533 TGTGGCCGACCCCTATATATG 58.815 52.381 0.00 0.00 33.59 1.78
5125 5431 2.634639 TGTGGCCGACCCCTATATAT 57.365 50.000 0.00 0.00 33.59 0.86
5126 5432 2.402182 TTGTGGCCGACCCCTATATA 57.598 50.000 0.00 0.00 33.59 0.86
5127 5433 1.513858 TTTGTGGCCGACCCCTATAT 58.486 50.000 0.00 0.00 33.59 0.86
5128 5434 1.065272 GTTTTGTGGCCGACCCCTATA 60.065 52.381 0.00 0.00 33.59 1.31
5129 5435 0.323087 GTTTTGTGGCCGACCCCTAT 60.323 55.000 0.00 0.00 33.59 2.57
5130 5436 1.073548 GTTTTGTGGCCGACCCCTA 59.926 57.895 0.00 0.00 33.59 3.53
5131 5437 2.203437 GTTTTGTGGCCGACCCCT 60.203 61.111 0.00 0.00 33.59 4.79
5132 5438 3.666253 CGTTTTGTGGCCGACCCC 61.666 66.667 0.00 0.00 33.59 4.95
5133 5439 2.592287 TCGTTTTGTGGCCGACCC 60.592 61.111 0.00 0.00 33.59 4.46
5134 5440 2.635338 GTCGTTTTGTGGCCGACC 59.365 61.111 0.00 0.00 43.77 4.79
5136 5442 2.592287 GGGTCGTTTTGTGGCCGA 60.592 61.111 0.00 0.00 0.00 5.54
5137 5443 2.902846 TGGGTCGTTTTGTGGCCG 60.903 61.111 0.00 0.00 0.00 6.13
5138 5444 1.388837 AACTGGGTCGTTTTGTGGCC 61.389 55.000 0.00 0.00 0.00 5.36
5139 5445 0.458260 AAACTGGGTCGTTTTGTGGC 59.542 50.000 0.00 0.00 33.57 5.01
5140 5446 1.746220 TGAAACTGGGTCGTTTTGTGG 59.254 47.619 0.00 0.00 37.24 4.17
5141 5447 3.175929 GTTGAAACTGGGTCGTTTTGTG 58.824 45.455 0.00 0.00 37.24 3.33
5142 5448 2.159490 CGTTGAAACTGGGTCGTTTTGT 60.159 45.455 0.00 0.00 37.24 2.83
5143 5449 2.446282 CGTTGAAACTGGGTCGTTTTG 58.554 47.619 0.00 0.00 37.24 2.44
5144 5450 1.402613 CCGTTGAAACTGGGTCGTTTT 59.597 47.619 0.00 0.00 37.24 2.43
5145 5451 1.018910 CCGTTGAAACTGGGTCGTTT 58.981 50.000 0.00 0.00 39.63 3.60
5146 5452 1.441732 GCCGTTGAAACTGGGTCGTT 61.442 55.000 6.31 0.00 0.00 3.85
5147 5453 1.890510 GCCGTTGAAACTGGGTCGT 60.891 57.895 6.31 0.00 0.00 4.34
5148 5454 2.613506 GGCCGTTGAAACTGGGTCG 61.614 63.158 0.00 0.00 0.00 4.79
5149 5455 1.527380 TGGCCGTTGAAACTGGGTC 60.527 57.895 0.00 0.00 0.00 4.46
5150 5456 1.826487 GTGGCCGTTGAAACTGGGT 60.826 57.895 0.00 0.00 0.00 4.51
5151 5457 1.106944 AAGTGGCCGTTGAAACTGGG 61.107 55.000 0.00 0.00 0.00 4.45
5152 5458 1.600023 TAAGTGGCCGTTGAAACTGG 58.400 50.000 0.00 0.00 0.00 4.00
5153 5459 3.701532 TTTAAGTGGCCGTTGAAACTG 57.298 42.857 0.00 0.00 0.00 3.16
5154 5460 3.067601 CCTTTTAAGTGGCCGTTGAAACT 59.932 43.478 0.00 0.00 0.00 2.66
5155 5461 3.377439 CCTTTTAAGTGGCCGTTGAAAC 58.623 45.455 0.00 0.00 0.00 2.78
5156 5462 2.223852 GCCTTTTAAGTGGCCGTTGAAA 60.224 45.455 0.00 2.87 43.11 2.69
5157 5463 1.338655 GCCTTTTAAGTGGCCGTTGAA 59.661 47.619 0.00 0.00 43.11 2.69
5158 5464 0.955905 GCCTTTTAAGTGGCCGTTGA 59.044 50.000 0.00 0.00 43.11 3.18
5159 5465 3.489813 GCCTTTTAAGTGGCCGTTG 57.510 52.632 0.00 0.00 43.11 4.10
5165 5471 2.962421 TGAAACTGGGCCTTTTAAGTGG 59.038 45.455 4.53 0.00 0.00 4.00
5166 5472 4.871933 ATGAAACTGGGCCTTTTAAGTG 57.128 40.909 4.53 0.00 0.00 3.16
5167 5473 7.553504 AATTATGAAACTGGGCCTTTTAAGT 57.446 32.000 4.53 0.00 0.00 2.24
5168 5474 9.366216 GTTAATTATGAAACTGGGCCTTTTAAG 57.634 33.333 4.53 0.00 0.00 1.85
5169 5475 8.871125 TGTTAATTATGAAACTGGGCCTTTTAA 58.129 29.630 4.53 0.00 0.00 1.52
5170 5476 8.423906 TGTTAATTATGAAACTGGGCCTTTTA 57.576 30.769 4.53 0.00 0.00 1.52
5171 5477 7.309770 TGTTAATTATGAAACTGGGCCTTTT 57.690 32.000 4.53 4.02 0.00 2.27
5172 5478 6.926630 TGTTAATTATGAAACTGGGCCTTT 57.073 33.333 4.53 0.00 0.00 3.11
5173 5479 8.602472 TTATGTTAATTATGAAACTGGGCCTT 57.398 30.769 4.53 0.00 0.00 4.35
5174 5480 8.782137 ATTATGTTAATTATGAAACTGGGCCT 57.218 30.769 4.53 0.00 0.00 5.19
5244 5550 3.112709 GCCAGTGAAGACGGCGAC 61.113 66.667 16.62 7.87 33.90 5.19
5245 5551 4.373116 GGCCAGTGAAGACGGCGA 62.373 66.667 16.62 0.00 40.54 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.