Multiple sequence alignment - TraesCS5B01G142200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G142200 chr5B 100.000 4297 0 0 1 4297 268111398 268115694 0.000000e+00 7936.0
1 TraesCS5B01G142200 chr5A 90.382 2589 113 60 178 2703 317692827 317695342 0.000000e+00 3277.0
2 TraesCS5B01G142200 chr5A 95.238 1008 34 9 2683 3690 317695354 317696347 0.000000e+00 1583.0
3 TraesCS5B01G142200 chr5A 89.840 374 30 7 3674 4045 317892366 317892733 1.400000e-129 473.0
4 TraesCS5B01G142200 chr5D 91.622 2065 96 35 670 2703 237577734 237575716 0.000000e+00 2784.0
5 TraesCS5B01G142200 chr5D 95.085 936 26 7 2683 3618 237575704 237574789 0.000000e+00 1456.0
6 TraesCS5B01G142200 chr5D 93.825 502 9 5 178 670 237588165 237587677 0.000000e+00 736.0
7 TraesCS5B01G142200 chr5D 89.669 484 37 4 3575 4045 237574772 237574289 4.750000e-169 604.0
8 TraesCS5B01G142200 chr5D 82.927 164 13 5 1 155 510382669 510382826 2.700000e-27 134.0
9 TraesCS5B01G142200 chr5D 83.942 137 13 2 34 161 554388071 554387935 5.840000e-24 122.0
10 TraesCS5B01G142200 chr3A 90.417 240 22 1 4042 4281 350849101 350849339 8.970000e-82 315.0
11 TraesCS5B01G142200 chr3A 87.600 250 29 2 4045 4292 352513607 352513856 5.440000e-74 289.0
12 TraesCS5B01G142200 chr3A 82.090 134 15 2 34 158 17735902 17736035 5.880000e-19 106.0
13 TraesCS5B01G142200 chr4A 88.976 254 27 1 4045 4297 282914877 282914624 3.230000e-81 313.0
14 TraesCS5B01G142200 chr4A 74.474 333 49 30 3568 3872 7126245 7126569 1.260000e-20 111.0
15 TraesCS5B01G142200 chr2D 88.889 252 27 1 4043 4294 90209907 90210157 4.170000e-80 309.0
16 TraesCS5B01G142200 chr2D 83.582 134 13 2 34 158 622878729 622878596 2.710000e-22 117.0
17 TraesCS5B01G142200 chr1D 88.353 249 27 2 4045 4292 161734251 161734004 9.030000e-77 298.0
18 TraesCS5B01G142200 chr1D 87.649 251 29 2 4043 4292 161651887 161651638 1.510000e-74 291.0
19 TraesCS5B01G142200 chr1D 87.500 248 29 2 4043 4289 351401906 351402152 7.030000e-73 285.0
20 TraesCS5B01G142200 chr4D 87.600 250 29 2 4044 4292 213666758 213667006 5.440000e-74 289.0
21 TraesCS5B01G142200 chr4D 87.854 247 27 2 4045 4290 174562720 174562476 1.960000e-73 287.0
22 TraesCS5B01G142200 chr4D 81.119 143 22 4 3733 3872 441056417 441056277 4.540000e-20 110.0
23 TraesCS5B01G142200 chr7A 82.979 141 23 1 3733 3872 589159545 589159405 4.510000e-25 126.0
24 TraesCS5B01G142200 chr3B 83.333 132 14 2 35 158 188495151 188495282 9.760000e-22 115.0
25 TraesCS5B01G142200 chr2B 83.088 136 14 2 34 160 229844549 229844684 9.760000e-22 115.0
26 TraesCS5B01G142200 chr2B 83.459 133 13 2 35 158 692531091 692530959 9.760000e-22 115.0
27 TraesCS5B01G142200 chr6D 81.884 138 12 5 34 158 174394090 174393953 2.110000e-18 104.0
28 TraesCS5B01G142200 chr1A 81.538 130 19 3 34 158 21096242 21096113 7.600000e-18 102.0
29 TraesCS5B01G142200 chr6B 89.333 75 8 0 3733 3807 134011162 134011088 1.270000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G142200 chr5B 268111398 268115694 4296 False 7936.000000 7936 100.000000 1 4297 1 chr5B.!!$F1 4296
1 TraesCS5B01G142200 chr5A 317692827 317696347 3520 False 2430.000000 3277 92.810000 178 3690 2 chr5A.!!$F2 3512
2 TraesCS5B01G142200 chr5D 237574289 237577734 3445 True 1614.666667 2784 92.125333 670 4045 3 chr5D.!!$R3 3375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 288 0.038618 GACCCACCAACGCAAAATCC 60.039 55.0 0.00 0.00 0.00 3.01 F
953 972 0.523072 CTTGCAGCCCACACACATAC 59.477 55.0 0.00 0.00 0.00 2.39 F
1501 1545 0.028110 GCTCGATTTGGTTGGCGATC 59.972 55.0 0.00 0.00 31.87 3.69 F
2908 3018 0.251073 TCCTGCCCCGTTTAGCTAAC 59.749 55.0 5.45 0.99 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1523 0.240945 CGCCAACCAAATCGAGCTTT 59.759 50.000 0.00 0.0 0.00 3.51 R
1955 2009 0.324943 GGAGCAGCCACCTAAACAGA 59.675 55.000 0.00 0.0 36.34 3.41 R
3133 3243 2.366533 CCTCTTGATGAGCTGCATTGT 58.633 47.619 1.02 0.0 41.35 2.71 R
4168 4346 0.035439 TTGGTCTTCTTGATCCGCCC 60.035 55.000 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.391312 ACAAAGATTCTTATGTGTTGCCC 57.609 39.130 0.00 0.00 0.00 5.36
24 25 4.220602 ACAAAGATTCTTATGTGTTGCCCC 59.779 41.667 0.00 0.00 0.00 5.80
25 26 4.322057 AAGATTCTTATGTGTTGCCCCT 57.678 40.909 0.00 0.00 0.00 4.79
26 27 3.891049 AGATTCTTATGTGTTGCCCCTC 58.109 45.455 0.00 0.00 0.00 4.30
27 28 3.266772 AGATTCTTATGTGTTGCCCCTCA 59.733 43.478 0.00 0.00 0.00 3.86
28 29 3.737559 TTCTTATGTGTTGCCCCTCAT 57.262 42.857 0.00 0.00 0.00 2.90
29 30 4.853468 TTCTTATGTGTTGCCCCTCATA 57.147 40.909 0.00 0.00 0.00 2.15
30 31 5.387113 TTCTTATGTGTTGCCCCTCATAT 57.613 39.130 0.00 0.00 0.00 1.78
31 32 6.508030 TTCTTATGTGTTGCCCCTCATATA 57.492 37.500 0.00 0.00 0.00 0.86
32 33 6.702449 TCTTATGTGTTGCCCCTCATATAT 57.298 37.500 0.00 0.00 0.00 0.86
33 34 7.806680 TCTTATGTGTTGCCCCTCATATATA 57.193 36.000 0.00 0.00 0.00 0.86
34 35 8.392631 TCTTATGTGTTGCCCCTCATATATAT 57.607 34.615 0.00 0.00 0.00 0.86
35 36 9.500701 TCTTATGTGTTGCCCCTCATATATATA 57.499 33.333 0.00 0.00 0.00 0.86
61 62 7.939784 ATATACCATGTAGTCGCATCTAAGA 57.060 36.000 0.00 0.00 0.00 2.10
62 63 6.842437 ATACCATGTAGTCGCATCTAAGAT 57.158 37.500 0.00 0.00 0.00 2.40
63 64 4.876125 ACCATGTAGTCGCATCTAAGATG 58.124 43.478 0.00 0.00 0.00 2.90
64 65 4.240888 CCATGTAGTCGCATCTAAGATGG 58.759 47.826 0.00 0.00 31.64 3.51
65 66 4.262207 CCATGTAGTCGCATCTAAGATGGT 60.262 45.833 0.00 0.00 32.81 3.55
66 67 4.569761 TGTAGTCGCATCTAAGATGGTC 57.430 45.455 0.00 0.00 0.00 4.02
67 68 4.207955 TGTAGTCGCATCTAAGATGGTCT 58.792 43.478 0.00 0.00 0.00 3.85
68 69 3.724508 AGTCGCATCTAAGATGGTCTG 57.275 47.619 0.00 0.00 0.00 3.51
69 70 3.027412 AGTCGCATCTAAGATGGTCTGT 58.973 45.455 0.00 0.00 0.00 3.41
70 71 3.067461 AGTCGCATCTAAGATGGTCTGTC 59.933 47.826 0.00 0.00 0.00 3.51
71 72 2.033424 TCGCATCTAAGATGGTCTGTCG 59.967 50.000 0.00 0.00 0.00 4.35
72 73 2.223595 CGCATCTAAGATGGTCTGTCGT 60.224 50.000 0.00 0.00 0.00 4.34
73 74 3.376540 GCATCTAAGATGGTCTGTCGTC 58.623 50.000 0.00 0.00 0.00 4.20
74 75 3.067461 GCATCTAAGATGGTCTGTCGTCT 59.933 47.826 0.00 0.00 34.74 4.18
75 76 4.791411 GCATCTAAGATGGTCTGTCGTCTC 60.791 50.000 0.00 0.00 32.32 3.36
76 77 2.937149 TCTAAGATGGTCTGTCGTCTCG 59.063 50.000 0.00 0.00 32.32 4.04
77 78 1.535833 AAGATGGTCTGTCGTCTCGT 58.464 50.000 0.00 0.00 32.32 4.18
78 79 0.805614 AGATGGTCTGTCGTCTCGTG 59.194 55.000 0.00 0.00 0.00 4.35
79 80 0.798771 GATGGTCTGTCGTCTCGTGC 60.799 60.000 0.00 0.00 0.00 5.34
80 81 1.244697 ATGGTCTGTCGTCTCGTGCT 61.245 55.000 0.00 0.00 0.00 4.40
81 82 1.154188 GGTCTGTCGTCTCGTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
82 83 1.579084 GGTCTGTCGTCTCGTGCTCT 61.579 60.000 0.00 0.00 0.00 4.09
83 84 0.238817 GTCTGTCGTCTCGTGCTCTT 59.761 55.000 0.00 0.00 0.00 2.85
84 85 0.952280 TCTGTCGTCTCGTGCTCTTT 59.048 50.000 0.00 0.00 0.00 2.52
85 86 1.069159 TCTGTCGTCTCGTGCTCTTTC 60.069 52.381 0.00 0.00 0.00 2.62
86 87 0.666374 TGTCGTCTCGTGCTCTTTCA 59.334 50.000 0.00 0.00 0.00 2.69
87 88 1.269723 TGTCGTCTCGTGCTCTTTCAT 59.730 47.619 0.00 0.00 0.00 2.57
88 89 1.914700 GTCGTCTCGTGCTCTTTCATC 59.085 52.381 0.00 0.00 0.00 2.92
89 90 1.539827 TCGTCTCGTGCTCTTTCATCA 59.460 47.619 0.00 0.00 0.00 3.07
90 91 2.164422 TCGTCTCGTGCTCTTTCATCAT 59.836 45.455 0.00 0.00 0.00 2.45
91 92 3.377172 TCGTCTCGTGCTCTTTCATCATA 59.623 43.478 0.00 0.00 0.00 2.15
92 93 4.105486 CGTCTCGTGCTCTTTCATCATAA 58.895 43.478 0.00 0.00 0.00 1.90
93 94 4.742167 CGTCTCGTGCTCTTTCATCATAAT 59.258 41.667 0.00 0.00 0.00 1.28
94 95 5.332130 CGTCTCGTGCTCTTTCATCATAATG 60.332 44.000 0.00 0.00 0.00 1.90
95 96 5.750547 GTCTCGTGCTCTTTCATCATAATGA 59.249 40.000 0.00 0.00 40.18 2.57
96 97 6.423302 GTCTCGTGCTCTTTCATCATAATGAT 59.577 38.462 0.00 0.00 41.49 2.45
97 98 6.988580 TCTCGTGCTCTTTCATCATAATGATT 59.011 34.615 0.00 0.00 41.49 2.57
98 99 6.951643 TCGTGCTCTTTCATCATAATGATTG 58.048 36.000 0.00 0.00 41.49 2.67
99 100 5.624081 CGTGCTCTTTCATCATAATGATTGC 59.376 40.000 0.00 0.00 41.49 3.56
100 101 5.624081 GTGCTCTTTCATCATAATGATTGCG 59.376 40.000 0.00 0.00 41.49 4.85
101 102 4.615961 GCTCTTTCATCATAATGATTGCGC 59.384 41.667 0.00 0.00 41.49 6.09
102 103 5.112220 TCTTTCATCATAATGATTGCGCC 57.888 39.130 4.18 0.00 41.49 6.53
103 104 4.823442 TCTTTCATCATAATGATTGCGCCT 59.177 37.500 4.18 0.00 41.49 5.52
104 105 5.300034 TCTTTCATCATAATGATTGCGCCTT 59.700 36.000 4.18 0.00 41.49 4.35
105 106 4.754372 TCATCATAATGATTGCGCCTTC 57.246 40.909 4.18 1.68 36.98 3.46
106 107 4.136051 TCATCATAATGATTGCGCCTTCA 58.864 39.130 4.18 8.56 36.98 3.02
107 108 4.763279 TCATCATAATGATTGCGCCTTCAT 59.237 37.500 14.42 14.42 36.98 2.57
108 109 4.492791 TCATAATGATTGCGCCTTCATG 57.507 40.909 19.21 11.13 33.01 3.07
109 110 2.780065 TAATGATTGCGCCTTCATGC 57.220 45.000 19.21 0.00 33.01 4.06
110 111 0.818938 AATGATTGCGCCTTCATGCA 59.181 45.000 19.21 0.00 39.81 3.96
111 112 1.037493 ATGATTGCGCCTTCATGCAT 58.963 45.000 18.17 0.00 41.42 3.96
112 113 0.382873 TGATTGCGCCTTCATGCATC 59.617 50.000 4.18 0.00 41.42 3.91
113 114 0.318445 GATTGCGCCTTCATGCATCC 60.318 55.000 4.18 0.00 41.42 3.51
114 115 1.038681 ATTGCGCCTTCATGCATCCA 61.039 50.000 4.18 0.00 41.42 3.41
115 116 1.038681 TTGCGCCTTCATGCATCCAT 61.039 50.000 4.18 0.00 41.42 3.41
116 117 0.179023 TGCGCCTTCATGCATCCATA 60.179 50.000 4.18 0.00 35.90 2.74
117 118 0.520404 GCGCCTTCATGCATCCATAG 59.480 55.000 0.00 0.00 0.00 2.23
118 119 1.888215 CGCCTTCATGCATCCATAGT 58.112 50.000 0.00 0.00 0.00 2.12
119 120 2.224606 CGCCTTCATGCATCCATAGTT 58.775 47.619 0.00 0.00 0.00 2.24
120 121 2.620115 CGCCTTCATGCATCCATAGTTT 59.380 45.455 0.00 0.00 0.00 2.66
121 122 3.814842 CGCCTTCATGCATCCATAGTTTA 59.185 43.478 0.00 0.00 0.00 2.01
122 123 4.319766 CGCCTTCATGCATCCATAGTTTAC 60.320 45.833 0.00 0.00 0.00 2.01
123 124 4.823989 GCCTTCATGCATCCATAGTTTACT 59.176 41.667 0.00 0.00 0.00 2.24
124 125 5.049129 GCCTTCATGCATCCATAGTTTACTC 60.049 44.000 0.00 0.00 0.00 2.59
125 126 5.471456 CCTTCATGCATCCATAGTTTACTCC 59.529 44.000 0.00 0.00 0.00 3.85
126 127 5.894298 TCATGCATCCATAGTTTACTCCT 57.106 39.130 0.00 0.00 0.00 3.69
127 128 5.614308 TCATGCATCCATAGTTTACTCCTG 58.386 41.667 0.00 0.00 0.00 3.86
128 129 3.808728 TGCATCCATAGTTTACTCCTGC 58.191 45.455 0.00 0.00 0.00 4.85
129 130 3.199727 TGCATCCATAGTTTACTCCTGCA 59.800 43.478 0.00 0.00 34.98 4.41
130 131 4.199310 GCATCCATAGTTTACTCCTGCAA 58.801 43.478 0.00 0.00 0.00 4.08
131 132 4.274459 GCATCCATAGTTTACTCCTGCAAG 59.726 45.833 0.00 0.00 0.00 4.01
142 143 4.157607 CTGCAAGGGTTTCCACGT 57.842 55.556 0.00 0.00 34.83 4.49
143 144 3.315765 CTGCAAGGGTTTCCACGTA 57.684 52.632 0.00 0.00 34.83 3.57
144 145 1.600023 CTGCAAGGGTTTCCACGTAA 58.400 50.000 0.00 0.00 34.83 3.18
145 146 1.950909 CTGCAAGGGTTTCCACGTAAA 59.049 47.619 0.00 0.00 34.83 2.01
146 147 2.359531 CTGCAAGGGTTTCCACGTAAAA 59.640 45.455 0.00 0.00 34.83 1.52
147 148 2.758979 TGCAAGGGTTTCCACGTAAAAA 59.241 40.909 0.00 0.00 34.83 1.94
148 149 3.385111 TGCAAGGGTTTCCACGTAAAAAT 59.615 39.130 0.00 0.00 34.83 1.82
149 150 3.985279 GCAAGGGTTTCCACGTAAAAATC 59.015 43.478 0.00 0.00 34.83 2.17
150 151 4.552355 CAAGGGTTTCCACGTAAAAATCC 58.448 43.478 13.64 13.64 36.14 3.01
151 152 3.834938 AGGGTTTCCACGTAAAAATCCA 58.165 40.909 20.33 0.00 37.98 3.41
152 153 4.412843 AGGGTTTCCACGTAAAAATCCAT 58.587 39.130 20.33 9.40 37.98 3.41
153 154 4.219725 AGGGTTTCCACGTAAAAATCCATG 59.780 41.667 20.33 0.00 37.98 3.66
154 155 4.021807 GGGTTTCCACGTAAAAATCCATGT 60.022 41.667 15.68 0.00 35.98 3.21
155 156 5.158494 GGTTTCCACGTAAAAATCCATGTC 58.842 41.667 0.00 0.00 0.00 3.06
156 157 5.048294 GGTTTCCACGTAAAAATCCATGTCT 60.048 40.000 0.00 0.00 0.00 3.41
157 158 5.873179 TTCCACGTAAAAATCCATGTCTC 57.127 39.130 0.00 0.00 0.00 3.36
158 159 3.930229 TCCACGTAAAAATCCATGTCTCG 59.070 43.478 0.00 0.00 0.00 4.04
159 160 3.682858 CCACGTAAAAATCCATGTCTCGT 59.317 43.478 0.00 0.00 0.00 4.18
160 161 4.153475 CCACGTAAAAATCCATGTCTCGTT 59.847 41.667 0.00 0.00 0.00 3.85
161 162 5.349270 CCACGTAAAAATCCATGTCTCGTTA 59.651 40.000 0.00 0.00 0.00 3.18
162 163 6.036735 CCACGTAAAAATCCATGTCTCGTTAT 59.963 38.462 0.00 0.00 0.00 1.89
163 164 7.413657 CCACGTAAAAATCCATGTCTCGTTATT 60.414 37.037 0.00 0.00 0.00 1.40
164 165 8.597227 CACGTAAAAATCCATGTCTCGTTATTA 58.403 33.333 0.00 0.00 0.00 0.98
165 166 9.321562 ACGTAAAAATCCATGTCTCGTTATTAT 57.678 29.630 0.00 0.00 0.00 1.28
166 167 9.580916 CGTAAAAATCCATGTCTCGTTATTATG 57.419 33.333 0.00 0.00 0.00 1.90
170 171 8.603242 AAATCCATGTCTCGTTATTATGTACC 57.397 34.615 0.00 0.00 0.00 3.34
171 172 6.718522 TCCATGTCTCGTTATTATGTACCA 57.281 37.500 0.00 0.00 0.00 3.25
172 173 6.509656 TCCATGTCTCGTTATTATGTACCAC 58.490 40.000 0.00 0.00 0.00 4.16
173 174 5.401376 CCATGTCTCGTTATTATGTACCACG 59.599 44.000 0.00 0.00 0.00 4.94
174 175 4.353737 TGTCTCGTTATTATGTACCACGC 58.646 43.478 0.00 0.00 0.00 5.34
175 176 3.419922 GTCTCGTTATTATGTACCACGCG 59.580 47.826 3.53 3.53 0.00 6.01
176 177 3.065233 TCTCGTTATTATGTACCACGCGT 59.935 43.478 5.58 5.58 0.00 6.01
202 203 3.119245 TCGTCGATGAAAAGGGGTTAGAG 60.119 47.826 4.45 0.00 0.00 2.43
213 214 2.039480 AGGGGTTAGAGAAAACGGGTTC 59.961 50.000 0.00 0.00 0.00 3.62
233 234 1.402968 CCATTGCTCCAATCAGTTCCG 59.597 52.381 0.00 0.00 31.05 4.30
287 288 0.038618 GACCCACCAACGCAAAATCC 60.039 55.000 0.00 0.00 0.00 3.01
389 390 3.984193 GATGAAGCGCTGGCCCAGT 62.984 63.158 12.58 0.00 41.24 4.00
427 428 4.321452 GCTGAATTCTGAAATCCACAAGCA 60.321 41.667 15.79 0.00 0.00 3.91
449 450 3.185455 AGGATAACTTCTCCCTGCAACT 58.815 45.455 0.00 0.00 32.89 3.16
450 451 3.198853 AGGATAACTTCTCCCTGCAACTC 59.801 47.826 0.00 0.00 32.89 3.01
452 453 2.849294 AACTTCTCCCTGCAACTCTC 57.151 50.000 0.00 0.00 0.00 3.20
468 469 6.155221 TGCAACTCTCTGATTAACTACTGGAT 59.845 38.462 0.00 0.00 0.00 3.41
469 470 6.699642 GCAACTCTCTGATTAACTACTGGATC 59.300 42.308 0.00 0.00 0.00 3.36
470 471 7.417342 GCAACTCTCTGATTAACTACTGGATCT 60.417 40.741 0.00 0.00 0.00 2.75
471 472 7.817418 ACTCTCTGATTAACTACTGGATCTC 57.183 40.000 0.00 0.00 0.00 2.75
474 475 8.595362 TCTCTGATTAACTACTGGATCTCAAA 57.405 34.615 0.00 0.00 0.00 2.69
476 477 9.829507 CTCTGATTAACTACTGGATCTCAAAAT 57.170 33.333 0.00 0.00 0.00 1.82
484 485 9.851686 AACTACTGGATCTCAAAATAATATGCA 57.148 29.630 0.00 0.00 0.00 3.96
657 662 3.636153 AATTGGGACCTCTCACTAAGC 57.364 47.619 0.00 0.00 0.00 3.09
663 668 3.119065 GGGACCTCTCACTAAGCAAGTAC 60.119 52.174 0.00 0.00 35.76 2.73
709 717 3.756963 TCTTGCTGTCATGTAGAGTACGT 59.243 43.478 0.00 0.00 0.00 3.57
710 718 4.939439 TCTTGCTGTCATGTAGAGTACGTA 59.061 41.667 0.00 0.00 0.00 3.57
711 719 4.611310 TGCTGTCATGTAGAGTACGTAC 57.389 45.455 18.10 18.10 0.00 3.67
808 816 6.511416 CCACGAATAATGGCCATAAAATCAA 58.489 36.000 21.15 0.00 0.00 2.57
852 860 4.702274 AACATGCCCCCACCCTGC 62.702 66.667 0.00 0.00 0.00 4.85
854 862 4.468769 CATGCCCCCACCCTGCAT 62.469 66.667 0.00 0.00 46.09 3.96
855 863 4.147587 ATGCCCCCACCCTGCATC 62.148 66.667 0.00 0.00 41.68 3.91
857 865 4.828296 GCCCCCACCCTGCATCTG 62.828 72.222 0.00 0.00 0.00 2.90
953 972 0.523072 CTTGCAGCCCACACACATAC 59.477 55.000 0.00 0.00 0.00 2.39
954 973 1.233950 TTGCAGCCCACACACATACG 61.234 55.000 0.00 0.00 0.00 3.06
955 974 2.398554 GCAGCCCACACACATACGG 61.399 63.158 0.00 0.00 0.00 4.02
956 975 1.295101 CAGCCCACACACATACGGA 59.705 57.895 0.00 0.00 0.00 4.69
957 976 0.740868 CAGCCCACACACATACGGAG 60.741 60.000 0.00 0.00 0.00 4.63
977 996 2.824341 AGTAGTACACAGGAAGAACCCG 59.176 50.000 2.52 0.00 40.05 5.28
1332 1351 3.692406 GACGGCTTCGGTGACCCT 61.692 66.667 0.00 0.00 38.38 4.34
1433 1477 7.873719 TTTTATGGGTTCATGTGGTATAGTG 57.126 36.000 0.00 0.00 34.96 2.74
1501 1545 0.028110 GCTCGATTTGGTTGGCGATC 59.972 55.000 0.00 0.00 31.87 3.69
1520 1564 3.241067 TCCTACGGCAACTGTACATTC 57.759 47.619 0.00 0.00 0.00 2.67
1567 1621 4.689612 ATTACCGGCAGTGAATCAGTAT 57.310 40.909 0.00 0.00 0.00 2.12
1678 1732 6.587273 AGTTGCCAGTTTAAAAGCCATTTTA 58.413 32.000 0.00 0.00 39.36 1.52
1770 1824 2.602568 ACCTCCTAACCGCCACGT 60.603 61.111 0.00 0.00 0.00 4.49
1774 1828 1.001020 TCCTAACCGCCACGTCCTA 60.001 57.895 0.00 0.00 0.00 2.94
1782 1836 3.003113 GCCACGTCCTACCTTCGCT 62.003 63.158 0.00 0.00 0.00 4.93
1825 1879 1.289109 TAAGCTTTGCGACACGGAGC 61.289 55.000 3.20 0.00 0.00 4.70
1827 1881 3.777925 CTTTGCGACACGGAGCGG 61.778 66.667 0.00 0.00 35.87 5.52
1828 1882 4.287781 TTTGCGACACGGAGCGGA 62.288 61.111 0.00 0.00 35.87 5.54
1829 1883 4.717629 TTGCGACACGGAGCGGAG 62.718 66.667 0.00 0.00 35.87 4.63
1965 2019 0.698238 TGGCCATGCTCTGTTTAGGT 59.302 50.000 0.00 0.00 0.00 3.08
1981 2035 4.459089 GTGGCTGCTCCTCCCGAC 62.459 72.222 0.00 0.00 35.26 4.79
2080 2156 6.409524 ACATTTCAAGCTTGGATCTCAAAA 57.590 33.333 25.73 16.44 34.56 2.44
2090 2166 7.904205 AGCTTGGATCTCAAAATTCAGAAAAT 58.096 30.769 0.00 0.00 34.56 1.82
2160 2236 6.856938 TCGTTGTAAAACAATTACCGAAATGG 59.143 34.615 0.00 0.00 40.59 3.16
2163 2239 4.882842 AAAACAATTACCGAAATGGGCT 57.117 36.364 0.00 0.00 44.64 5.19
2167 2243 3.194755 ACAATTACCGAAATGGGCTTTCC 59.805 43.478 0.00 0.00 44.64 3.13
2194 2272 9.159364 CATCATACATTCATACTGTATCCCTTG 57.841 37.037 0.00 0.00 37.64 3.61
2210 2288 3.054655 TCCCTTGGTAAGCTGAATACACC 60.055 47.826 0.00 0.00 0.00 4.16
2227 2305 3.589988 ACACCAAACTCTGCGAATCTAG 58.410 45.455 0.00 0.00 0.00 2.43
2228 2306 3.006967 ACACCAAACTCTGCGAATCTAGT 59.993 43.478 0.00 0.00 0.00 2.57
2269 2347 5.220453 GCAATTTTGTTTCAGGATATTGGCG 60.220 40.000 0.00 0.00 0.00 5.69
2398 2476 3.576648 GGACCTCAACGAAGAACTACAG 58.423 50.000 0.00 0.00 0.00 2.74
2409 2487 8.802856 CAACGAAGAACTACAGAAAGATATCAG 58.197 37.037 5.32 0.00 0.00 2.90
2423 2501 9.225436 AGAAAGATATCAGAAGAACCAAGAAAC 57.775 33.333 5.32 0.00 0.00 2.78
2449 2527 3.796717 TCTTGCGCATACTGAATACTTCG 59.203 43.478 12.75 0.00 0.00 3.79
2517 2597 5.295787 TGTGTGTGAAGAAATAAGTGTCCAC 59.704 40.000 0.00 0.00 0.00 4.02
2562 2642 5.149273 CACTCAGAACATTTTCAATGTCCG 58.851 41.667 2.65 0.00 33.72 4.79
2567 2648 6.695278 TCAGAACATTTTCAATGTCCGTTTTC 59.305 34.615 2.65 0.00 33.72 2.29
2574 2655 7.518731 TTTTCAATGTCCGTTTTCTTTTCAG 57.481 32.000 0.00 0.00 0.00 3.02
2576 2657 5.577835 TCAATGTCCGTTTTCTTTTCAGTG 58.422 37.500 0.00 0.00 0.00 3.66
2588 2669 8.655970 GTTTTCTTTTCAGTGTTGTTTGCTATT 58.344 29.630 0.00 0.00 0.00 1.73
2589 2670 8.770438 TTTCTTTTCAGTGTTGTTTGCTATTT 57.230 26.923 0.00 0.00 0.00 1.40
2590 2671 9.862371 TTTCTTTTCAGTGTTGTTTGCTATTTA 57.138 25.926 0.00 0.00 0.00 1.40
2693 2775 6.641314 TCGAGATAGTTCAGAGACAACAAAAC 59.359 38.462 0.00 0.00 0.00 2.43
2703 2785 8.203937 TCAGAGACAACAAAACGAGAATTTTA 57.796 30.769 0.00 0.00 30.57 1.52
2704 2786 8.670135 TCAGAGACAACAAAACGAGAATTTTAA 58.330 29.630 0.00 0.00 30.57 1.52
2707 2789 7.540299 AGACAACAAAACGAGAATTTTAACCA 58.460 30.769 0.00 0.00 30.57 3.67
2708 2790 8.194769 AGACAACAAAACGAGAATTTTAACCAT 58.805 29.630 0.00 0.00 30.57 3.55
2709 2791 8.710835 ACAACAAAACGAGAATTTTAACCATT 57.289 26.923 0.00 0.00 30.57 3.16
2710 2792 8.599774 ACAACAAAACGAGAATTTTAACCATTG 58.400 29.630 0.00 0.00 30.57 2.82
2897 3007 2.295602 TACCGAACCTTCCTGCCCC 61.296 63.158 0.00 0.00 0.00 5.80
2898 3008 4.778143 CCGAACCTTCCTGCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
2908 3018 0.251073 TCCTGCCCCGTTTAGCTAAC 59.749 55.000 5.45 0.99 0.00 2.34
2909 3019 0.252197 CCTGCCCCGTTTAGCTAACT 59.748 55.000 5.45 0.00 34.46 2.24
2910 3020 1.339727 CCTGCCCCGTTTAGCTAACTT 60.340 52.381 5.45 0.00 34.46 2.66
2911 3021 2.093341 CCTGCCCCGTTTAGCTAACTTA 60.093 50.000 5.45 0.00 34.46 2.24
2912 3022 3.433173 CCTGCCCCGTTTAGCTAACTTAT 60.433 47.826 5.45 0.00 34.46 1.73
2913 3023 4.202284 CCTGCCCCGTTTAGCTAACTTATA 60.202 45.833 5.45 0.00 34.46 0.98
2928 3038 9.915629 AGCTAACTTATATTATCCGTTTCTCTG 57.084 33.333 0.00 0.00 0.00 3.35
3133 3243 8.626526 GTCTTGTTTAAACTCATCCCAAAGTTA 58.373 33.333 18.72 0.00 34.71 2.24
3410 3520 4.717233 TTTGTGCAGTTTGACATGTTCT 57.283 36.364 0.00 0.00 0.00 3.01
3413 3523 5.826601 TGTGCAGTTTGACATGTTCTTTA 57.173 34.783 0.00 0.00 0.00 1.85
3623 3788 4.445452 AAAGTCGCATCAAGATTGCAAT 57.555 36.364 12.83 12.83 0.00 3.56
3639 3804 2.819019 TGCAATCGGAATGAACACACAT 59.181 40.909 0.00 0.00 0.00 3.21
3677 3842 5.687770 TTATGATGACACAACCAACACAG 57.312 39.130 0.00 0.00 0.00 3.66
3754 3932 1.545582 CCATCAACATCAACCACCACC 59.454 52.381 0.00 0.00 0.00 4.61
3760 3938 1.086696 CATCAACCACCACCGATGAC 58.913 55.000 0.00 0.00 37.97 3.06
3767 3945 1.148310 CACCACCGATGACAACACTC 58.852 55.000 0.00 0.00 0.00 3.51
3769 3947 1.148310 CCACCGATGACAACACTCAC 58.852 55.000 0.00 0.00 0.00 3.51
3771 3949 2.209273 CACCGATGACAACACTCACAA 58.791 47.619 0.00 0.00 0.00 3.33
3782 3960 6.493115 TGACAACACTCACAATATGGGAAAAT 59.507 34.615 0.00 0.00 30.75 1.82
3829 4007 1.737735 CAACGATGTGCGAGCCTCA 60.738 57.895 0.00 0.00 44.57 3.86
3830 4008 1.086067 CAACGATGTGCGAGCCTCAT 61.086 55.000 0.00 0.00 44.57 2.90
3892 4070 4.119862 CAGTTTTCACTCCGAAGAGAACA 58.880 43.478 0.00 0.00 43.39 3.18
3904 4082 4.275936 CCGAAGAGAACATCCAAACAACTT 59.724 41.667 0.00 0.00 0.00 2.66
3909 4087 5.529060 AGAGAACATCCAAACAACTTGAGAC 59.471 40.000 0.00 0.00 37.17 3.36
3924 4102 2.229792 TGAGACAAATGCCTCCACAAC 58.770 47.619 0.00 0.00 0.00 3.32
3937 4115 2.481212 CACAACGGGATGATGTGGG 58.519 57.895 0.00 0.00 44.94 4.61
3954 4132 2.438434 GACACCCCCATTGCCTCG 60.438 66.667 0.00 0.00 0.00 4.63
3961 4139 0.609131 CCCCATTGCCTCGTTCAACT 60.609 55.000 0.00 0.00 0.00 3.16
3974 4152 5.336055 CCTCGTTCAACTAGTTCAGATCAGT 60.336 44.000 4.77 0.00 0.00 3.41
3988 4166 8.160106 AGTTCAGATCAGTCCTAAAGTTTTCAT 58.840 33.333 0.00 0.00 0.00 2.57
3992 4170 9.658799 CAGATCAGTCCTAAAGTTTTCATTCTA 57.341 33.333 0.00 0.00 0.00 2.10
4001 4179 5.635417 AAGTTTTCATTCTAGAGCTTGGC 57.365 39.130 0.00 0.00 0.00 4.52
4007 4185 5.620738 TCATTCTAGAGCTTGGCACTAAT 57.379 39.130 0.00 0.00 32.05 1.73
4010 4188 3.107601 TCTAGAGCTTGGCACTAATGGT 58.892 45.455 0.00 0.00 32.05 3.55
4032 4210 3.195661 GCAGATTTCCGTTAGTACCCTG 58.804 50.000 0.00 0.00 0.00 4.45
4034 4212 3.449737 CAGATTTCCGTTAGTACCCTGGA 59.550 47.826 0.00 0.00 0.00 3.86
4045 4223 2.043652 CCCTGGATTGGGTGCCTG 60.044 66.667 0.00 0.00 42.25 4.85
4046 4224 2.765969 CCTGGATTGGGTGCCTGT 59.234 61.111 0.00 0.00 0.00 4.00
4047 4225 1.379044 CCTGGATTGGGTGCCTGTC 60.379 63.158 0.00 0.00 0.00 3.51
4048 4226 1.379916 CTGGATTGGGTGCCTGTCA 59.620 57.895 0.00 0.00 0.00 3.58
4049 4227 0.679002 CTGGATTGGGTGCCTGTCAG 60.679 60.000 0.00 0.00 0.00 3.51
4050 4228 1.380302 GGATTGGGTGCCTGTCAGT 59.620 57.895 0.00 0.00 0.00 3.41
4051 4229 0.962356 GGATTGGGTGCCTGTCAGTG 60.962 60.000 0.00 0.00 0.00 3.66
4052 4230 1.589716 GATTGGGTGCCTGTCAGTGC 61.590 60.000 0.00 2.91 0.00 4.40
4053 4231 2.356173 ATTGGGTGCCTGTCAGTGCA 62.356 55.000 10.78 10.78 34.54 4.57
4054 4232 2.203337 GGGTGCCTGTCAGTGCAA 60.203 61.111 15.01 1.28 39.57 4.08
4055 4233 2.555547 GGGTGCCTGTCAGTGCAAC 61.556 63.158 18.03 18.03 44.44 4.17
4056 4234 1.823470 GGTGCCTGTCAGTGCAACA 60.823 57.895 20.17 0.00 44.56 3.33
4057 4235 1.383456 GGTGCCTGTCAGTGCAACAA 61.383 55.000 20.17 0.00 44.56 2.83
4058 4236 0.455410 GTGCCTGTCAGTGCAACAAA 59.545 50.000 15.01 0.00 41.43 2.83
4059 4237 0.455410 TGCCTGTCAGTGCAACAAAC 59.545 50.000 12.03 0.00 41.43 2.93
4060 4238 0.249031 GCCTGTCAGTGCAACAAACC 60.249 55.000 8.05 0.00 41.43 3.27
4061 4239 1.392589 CCTGTCAGTGCAACAAACCT 58.607 50.000 0.00 0.00 41.43 3.50
4062 4240 1.750778 CCTGTCAGTGCAACAAACCTT 59.249 47.619 0.00 0.00 41.43 3.50
4063 4241 2.166254 CCTGTCAGTGCAACAAACCTTT 59.834 45.455 0.00 0.00 41.43 3.11
4064 4242 3.380004 CCTGTCAGTGCAACAAACCTTTA 59.620 43.478 0.00 0.00 41.43 1.85
4065 4243 4.037923 CCTGTCAGTGCAACAAACCTTTAT 59.962 41.667 0.00 0.00 41.43 1.40
4066 4244 4.930963 TGTCAGTGCAACAAACCTTTATG 58.069 39.130 0.00 0.00 41.43 1.90
4067 4245 4.400884 TGTCAGTGCAACAAACCTTTATGT 59.599 37.500 0.00 0.00 41.43 2.29
4068 4246 5.590663 TGTCAGTGCAACAAACCTTTATGTA 59.409 36.000 0.00 0.00 41.43 2.29
4069 4247 6.264292 TGTCAGTGCAACAAACCTTTATGTAT 59.736 34.615 0.00 0.00 41.43 2.29
4070 4248 6.582295 GTCAGTGCAACAAACCTTTATGTATG 59.418 38.462 0.00 0.00 41.43 2.39
4071 4249 6.264292 TCAGTGCAACAAACCTTTATGTATGT 59.736 34.615 0.00 0.00 41.43 2.29
4072 4250 6.922957 CAGTGCAACAAACCTTTATGTATGTT 59.077 34.615 0.00 0.00 41.43 2.71
4073 4251 6.922957 AGTGCAACAAACCTTTATGTATGTTG 59.077 34.615 11.04 11.04 46.28 3.33
4075 4253 6.704512 CAACAAACCTTTATGTATGTTGCC 57.295 37.500 3.83 0.00 40.52 4.52
4076 4254 5.400066 ACAAACCTTTATGTATGTTGCCC 57.600 39.130 0.00 0.00 0.00 5.36
4077 4255 4.835615 ACAAACCTTTATGTATGTTGCCCA 59.164 37.500 0.00 0.00 0.00 5.36
4078 4256 5.047377 ACAAACCTTTATGTATGTTGCCCAG 60.047 40.000 0.00 0.00 0.00 4.45
4079 4257 4.584638 ACCTTTATGTATGTTGCCCAGA 57.415 40.909 0.00 0.00 0.00 3.86
4080 4258 4.270008 ACCTTTATGTATGTTGCCCAGAC 58.730 43.478 0.00 0.00 35.80 3.51
4081 4259 4.018415 ACCTTTATGTATGTTGCCCAGACT 60.018 41.667 0.82 0.00 36.24 3.24
4082 4260 4.336433 CCTTTATGTATGTTGCCCAGACTG 59.664 45.833 0.00 0.00 36.24 3.51
4083 4261 4.568072 TTATGTATGTTGCCCAGACTGT 57.432 40.909 0.93 0.00 36.24 3.55
4084 4262 5.685520 TTATGTATGTTGCCCAGACTGTA 57.314 39.130 0.93 0.00 36.24 2.74
4085 4263 3.328382 TGTATGTTGCCCAGACTGTAC 57.672 47.619 0.93 0.00 36.24 2.90
4086 4264 2.635427 TGTATGTTGCCCAGACTGTACA 59.365 45.455 0.93 0.00 36.24 2.90
4087 4265 2.185004 ATGTTGCCCAGACTGTACAC 57.815 50.000 0.93 0.00 0.00 2.90
4088 4266 0.833949 TGTTGCCCAGACTGTACACA 59.166 50.000 0.93 0.00 0.00 3.72
4099 4277 2.806288 CTGTACACAGGCGCAATAAC 57.194 50.000 10.83 0.00 40.20 1.89
4100 4278 2.073056 CTGTACACAGGCGCAATAACA 58.927 47.619 10.83 4.53 40.20 2.41
4101 4279 2.482336 CTGTACACAGGCGCAATAACAA 59.518 45.455 10.83 0.00 40.20 2.83
4102 4280 2.482336 TGTACACAGGCGCAATAACAAG 59.518 45.455 10.83 0.00 0.00 3.16
4103 4281 0.881118 ACACAGGCGCAATAACAAGG 59.119 50.000 10.83 0.00 0.00 3.61
4104 4282 0.171007 CACAGGCGCAATAACAAGGG 59.829 55.000 10.83 0.00 0.00 3.95
4105 4283 0.251165 ACAGGCGCAATAACAAGGGT 60.251 50.000 10.83 0.00 0.00 4.34
4106 4284 1.003812 ACAGGCGCAATAACAAGGGTA 59.996 47.619 10.83 0.00 0.00 3.69
4107 4285 1.400494 CAGGCGCAATAACAAGGGTAC 59.600 52.381 10.83 0.00 0.00 3.34
4108 4286 1.003812 AGGCGCAATAACAAGGGTACA 59.996 47.619 10.83 0.00 0.00 2.90
4109 4287 1.813786 GGCGCAATAACAAGGGTACAA 59.186 47.619 10.83 0.00 0.00 2.41
4110 4288 2.414957 GGCGCAATAACAAGGGTACAAC 60.415 50.000 10.83 0.00 0.00 3.32
4111 4289 2.226912 GCGCAATAACAAGGGTACAACA 59.773 45.455 0.30 0.00 0.00 3.33
4112 4290 3.669557 GCGCAATAACAAGGGTACAACAG 60.670 47.826 0.30 0.00 0.00 3.16
4113 4291 3.669557 CGCAATAACAAGGGTACAACAGC 60.670 47.826 0.00 0.00 0.00 4.40
4114 4292 3.254657 GCAATAACAAGGGTACAACAGCA 59.745 43.478 0.00 0.00 0.00 4.41
4115 4293 4.261825 GCAATAACAAGGGTACAACAGCAA 60.262 41.667 0.00 0.00 0.00 3.91
4116 4294 5.566627 GCAATAACAAGGGTACAACAGCAAT 60.567 40.000 0.00 0.00 0.00 3.56
4117 4295 6.349777 GCAATAACAAGGGTACAACAGCAATA 60.350 38.462 0.00 0.00 0.00 1.90
4118 4296 7.598278 CAATAACAAGGGTACAACAGCAATAA 58.402 34.615 0.00 0.00 0.00 1.40
4119 4297 5.705609 AACAAGGGTACAACAGCAATAAG 57.294 39.130 0.00 0.00 0.00 1.73
4120 4298 3.506067 ACAAGGGTACAACAGCAATAAGC 59.494 43.478 0.00 0.00 46.19 3.09
4132 4310 3.772060 GCAATAAGCTCCCAAGACAAG 57.228 47.619 0.00 0.00 41.15 3.16
4133 4311 2.424956 GCAATAAGCTCCCAAGACAAGG 59.575 50.000 0.00 0.00 41.15 3.61
4134 4312 2.424956 CAATAAGCTCCCAAGACAAGGC 59.575 50.000 0.00 0.00 0.00 4.35
4135 4313 0.328258 TAAGCTCCCAAGACAAGGCC 59.672 55.000 0.00 0.00 0.00 5.19
4136 4314 1.719063 AAGCTCCCAAGACAAGGCCA 61.719 55.000 5.01 0.00 0.00 5.36
4137 4315 1.228552 GCTCCCAAGACAAGGCCAA 60.229 57.895 5.01 0.00 0.00 4.52
4138 4316 1.246737 GCTCCCAAGACAAGGCCAAG 61.247 60.000 5.01 0.00 0.00 3.61
4139 4317 1.228552 TCCCAAGACAAGGCCAAGC 60.229 57.895 5.01 0.00 0.00 4.01
4151 4329 3.304041 GCCAAGCCAGAGAGATAGC 57.696 57.895 0.00 0.00 0.00 2.97
4152 4330 0.758123 GCCAAGCCAGAGAGATAGCT 59.242 55.000 0.00 0.00 37.10 3.32
4153 4331 1.270252 GCCAAGCCAGAGAGATAGCTC 60.270 57.143 0.00 0.00 41.62 4.09
4166 4344 5.543507 GAGATAGCTCTTTGAGGGATCAA 57.456 43.478 0.00 0.00 38.16 2.57
4167 4345 5.923204 GAGATAGCTCTTTGAGGGATCAAA 58.077 41.667 0.00 3.62 38.16 2.69
4172 4350 3.264574 TTTGAGGGATCAAAGGGCG 57.735 52.632 0.00 0.00 35.01 6.13
4173 4351 0.323360 TTTGAGGGATCAAAGGGCGG 60.323 55.000 0.00 0.00 35.01 6.13
4174 4352 1.204786 TTGAGGGATCAAAGGGCGGA 61.205 55.000 0.00 0.00 0.00 5.54
4175 4353 0.988145 TGAGGGATCAAAGGGCGGAT 60.988 55.000 0.00 0.00 0.00 4.18
4176 4354 0.250510 GAGGGATCAAAGGGCGGATC 60.251 60.000 0.00 0.00 39.31 3.36
4177 4355 0.988145 AGGGATCAAAGGGCGGATCA 60.988 55.000 0.00 0.00 41.30 2.92
4178 4356 0.106719 GGGATCAAAGGGCGGATCAA 60.107 55.000 0.00 0.00 41.30 2.57
4179 4357 1.312815 GGATCAAAGGGCGGATCAAG 58.687 55.000 0.00 0.00 41.30 3.02
4180 4358 1.134098 GGATCAAAGGGCGGATCAAGA 60.134 52.381 0.00 0.00 41.30 3.02
4181 4359 2.643551 GATCAAAGGGCGGATCAAGAA 58.356 47.619 0.00 0.00 39.71 2.52
4182 4360 2.113860 TCAAAGGGCGGATCAAGAAG 57.886 50.000 0.00 0.00 0.00 2.85
4183 4361 1.628340 TCAAAGGGCGGATCAAGAAGA 59.372 47.619 0.00 0.00 0.00 2.87
4184 4362 1.740025 CAAAGGGCGGATCAAGAAGAC 59.260 52.381 0.00 0.00 0.00 3.01
4185 4363 0.253327 AAGGGCGGATCAAGAAGACC 59.747 55.000 0.00 0.00 0.00 3.85
4186 4364 0.909610 AGGGCGGATCAAGAAGACCA 60.910 55.000 0.00 0.00 0.00 4.02
4187 4365 0.035439 GGGCGGATCAAGAAGACCAA 60.035 55.000 0.00 0.00 0.00 3.67
4188 4366 1.373570 GGCGGATCAAGAAGACCAAG 58.626 55.000 0.00 0.00 0.00 3.61
4189 4367 1.066143 GGCGGATCAAGAAGACCAAGA 60.066 52.381 0.00 0.00 0.00 3.02
4190 4368 2.003301 GCGGATCAAGAAGACCAAGAC 58.997 52.381 0.00 0.00 0.00 3.01
4191 4369 2.612972 GCGGATCAAGAAGACCAAGACA 60.613 50.000 0.00 0.00 0.00 3.41
4192 4370 3.664107 CGGATCAAGAAGACCAAGACAA 58.336 45.455 0.00 0.00 0.00 3.18
4193 4371 3.681897 CGGATCAAGAAGACCAAGACAAG 59.318 47.826 0.00 0.00 0.00 3.16
4194 4372 3.438434 GGATCAAGAAGACCAAGACAAGC 59.562 47.826 0.00 0.00 0.00 4.01
4195 4373 3.845781 TCAAGAAGACCAAGACAAGCT 57.154 42.857 0.00 0.00 0.00 3.74
4196 4374 4.955811 TCAAGAAGACCAAGACAAGCTA 57.044 40.909 0.00 0.00 0.00 3.32
4197 4375 5.290493 TCAAGAAGACCAAGACAAGCTAA 57.710 39.130 0.00 0.00 0.00 3.09
4198 4376 5.300752 TCAAGAAGACCAAGACAAGCTAAG 58.699 41.667 0.00 0.00 0.00 2.18
4199 4377 4.278975 AGAAGACCAAGACAAGCTAAGG 57.721 45.455 0.00 0.00 0.00 2.69
4200 4378 3.008485 AGAAGACCAAGACAAGCTAAGGG 59.992 47.826 0.00 0.00 0.00 3.95
4201 4379 2.621070 AGACCAAGACAAGCTAAGGGA 58.379 47.619 0.00 0.00 0.00 4.20
4202 4380 2.979678 AGACCAAGACAAGCTAAGGGAA 59.020 45.455 0.00 0.00 0.00 3.97
4203 4381 3.075148 GACCAAGACAAGCTAAGGGAAC 58.925 50.000 0.00 0.00 0.00 3.62
4204 4382 2.441750 ACCAAGACAAGCTAAGGGAACA 59.558 45.455 0.00 0.00 0.00 3.18
4205 4383 3.117663 ACCAAGACAAGCTAAGGGAACAA 60.118 43.478 0.00 0.00 0.00 2.83
4206 4384 3.503748 CCAAGACAAGCTAAGGGAACAAG 59.496 47.826 0.00 0.00 0.00 3.16
4207 4385 4.389374 CAAGACAAGCTAAGGGAACAAGA 58.611 43.478 0.00 0.00 0.00 3.02
4208 4386 4.009370 AGACAAGCTAAGGGAACAAGAC 57.991 45.455 0.00 0.00 0.00 3.01
4209 4387 3.391296 AGACAAGCTAAGGGAACAAGACA 59.609 43.478 0.00 0.00 0.00 3.41
4210 4388 4.042187 AGACAAGCTAAGGGAACAAGACAT 59.958 41.667 0.00 0.00 0.00 3.06
4211 4389 4.327680 ACAAGCTAAGGGAACAAGACATC 58.672 43.478 0.00 0.00 0.00 3.06
4212 4390 4.202461 ACAAGCTAAGGGAACAAGACATCA 60.202 41.667 0.00 0.00 0.00 3.07
4213 4391 3.944087 AGCTAAGGGAACAAGACATCAC 58.056 45.455 0.00 0.00 0.00 3.06
4214 4392 3.584848 AGCTAAGGGAACAAGACATCACT 59.415 43.478 0.00 0.00 0.00 3.41
4215 4393 4.777896 AGCTAAGGGAACAAGACATCACTA 59.222 41.667 0.00 0.00 0.00 2.74
4216 4394 5.248477 AGCTAAGGGAACAAGACATCACTAA 59.752 40.000 0.00 0.00 0.00 2.24
4217 4395 5.582665 GCTAAGGGAACAAGACATCACTAAG 59.417 44.000 0.00 0.00 0.00 2.18
4218 4396 4.559862 AGGGAACAAGACATCACTAAGG 57.440 45.455 0.00 0.00 0.00 2.69
4219 4397 4.168101 AGGGAACAAGACATCACTAAGGA 58.832 43.478 0.00 0.00 0.00 3.36
4220 4398 4.597507 AGGGAACAAGACATCACTAAGGAA 59.402 41.667 0.00 0.00 0.00 3.36
4221 4399 5.073144 AGGGAACAAGACATCACTAAGGAAA 59.927 40.000 0.00 0.00 0.00 3.13
4222 4400 5.412904 GGGAACAAGACATCACTAAGGAAAG 59.587 44.000 0.00 0.00 0.00 2.62
4223 4401 6.231211 GGAACAAGACATCACTAAGGAAAGA 58.769 40.000 0.00 0.00 0.00 2.52
4224 4402 6.147985 GGAACAAGACATCACTAAGGAAAGAC 59.852 42.308 0.00 0.00 0.00 3.01
4225 4403 5.552178 ACAAGACATCACTAAGGAAAGACC 58.448 41.667 0.00 0.00 39.35 3.85
4236 4414 0.540454 GGAAAGACCTCCCTTACCGG 59.460 60.000 0.00 0.00 35.41 5.28
4245 4423 3.480133 CCTTACCGGGCAGGGGAG 61.480 72.222 6.32 5.15 46.96 4.30
4246 4424 4.176752 CTTACCGGGCAGGGGAGC 62.177 72.222 6.32 0.00 46.96 4.70
4254 4432 2.509916 GCAGGGGAGCCTGATCAG 59.490 66.667 16.24 16.24 39.96 2.90
4263 4441 2.818132 CCTGATCAGGTCGAGGCC 59.182 66.667 30.55 0.00 43.61 5.19
4264 4442 1.760086 CCTGATCAGGTCGAGGCCT 60.760 63.158 30.55 3.86 43.61 5.19
4265 4443 1.739049 CTGATCAGGTCGAGGCCTC 59.261 63.158 23.79 23.79 36.58 4.70
4266 4444 1.000359 TGATCAGGTCGAGGCCTCA 60.000 57.895 31.67 16.40 36.58 3.86
4267 4445 1.323271 TGATCAGGTCGAGGCCTCAC 61.323 60.000 31.67 25.42 36.58 3.51
4268 4446 2.022240 GATCAGGTCGAGGCCTCACC 62.022 65.000 31.44 31.44 36.58 4.02
4269 4447 2.805313 ATCAGGTCGAGGCCTCACCA 62.805 60.000 35.71 25.14 43.14 4.17
4270 4448 2.203788 AGGTCGAGGCCTCACCAA 60.204 61.111 35.71 18.90 43.14 3.67
4271 4449 2.266055 GGTCGAGGCCTCACCAAG 59.734 66.667 32.57 19.52 43.14 3.61
4273 4451 3.003173 TCGAGGCCTCACCAAGGG 61.003 66.667 31.67 13.99 46.32 3.95
4278 4456 2.116125 GCCTCACCAAGGGCAAGT 59.884 61.111 0.00 0.00 46.32 3.16
4279 4457 1.973812 GCCTCACCAAGGGCAAGTC 60.974 63.158 0.00 0.00 46.32 3.01
4280 4458 1.303643 CCTCACCAAGGGCAAGTCC 60.304 63.158 0.00 0.00 42.03 3.85
4290 4468 2.351777 GGCAAGTCCCAAGTTTCCC 58.648 57.895 0.00 0.00 0.00 3.97
4291 4469 1.185618 GGCAAGTCCCAAGTTTCCCC 61.186 60.000 0.00 0.00 0.00 4.81
4292 4470 1.185618 GCAAGTCCCAAGTTTCCCCC 61.186 60.000 0.00 0.00 0.00 5.40
4293 4471 0.893727 CAAGTCCCAAGTTTCCCCCG 60.894 60.000 0.00 0.00 0.00 5.73
4294 4472 1.063654 AAGTCCCAAGTTTCCCCCGA 61.064 55.000 0.00 0.00 0.00 5.14
4295 4473 1.303074 GTCCCAAGTTTCCCCCGAC 60.303 63.158 0.00 0.00 0.00 4.79
4296 4474 1.770927 TCCCAAGTTTCCCCCGACA 60.771 57.895 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.417580 GGGGCAACACATAAGAATCTTTGTA 59.582 40.000 0.00 0.00 42.67 2.41
1 2 4.220602 GGGGCAACACATAAGAATCTTTGT 59.779 41.667 0.00 3.14 42.67 2.83
2 3 4.747810 GGGGCAACACATAAGAATCTTTG 58.252 43.478 0.00 2.52 42.67 2.77
35 36 9.628500 TCTTAGATGCGACTACATGGTATATAT 57.372 33.333 0.00 0.00 0.00 0.86
36 37 9.628500 ATCTTAGATGCGACTACATGGTATATA 57.372 33.333 0.00 0.00 0.00 0.86
37 38 7.939784 TCTTAGATGCGACTACATGGTATAT 57.060 36.000 0.00 0.00 0.00 0.86
38 39 7.148069 CCATCTTAGATGCGACTACATGGTATA 60.148 40.741 16.18 0.00 33.14 1.47
39 40 6.350528 CCATCTTAGATGCGACTACATGGTAT 60.351 42.308 16.18 0.00 33.14 2.73
40 41 5.048013 CCATCTTAGATGCGACTACATGGTA 60.048 44.000 16.18 0.00 33.14 3.25
41 42 4.262207 CCATCTTAGATGCGACTACATGGT 60.262 45.833 16.18 0.00 33.14 3.55
42 43 4.240888 CCATCTTAGATGCGACTACATGG 58.759 47.826 16.18 0.00 31.98 3.66
43 44 4.876125 ACCATCTTAGATGCGACTACATG 58.124 43.478 16.18 2.75 0.00 3.21
44 45 4.830046 AGACCATCTTAGATGCGACTACAT 59.170 41.667 16.18 0.00 0.00 2.29
45 46 4.036852 CAGACCATCTTAGATGCGACTACA 59.963 45.833 16.18 0.00 0.00 2.74
46 47 4.036971 ACAGACCATCTTAGATGCGACTAC 59.963 45.833 16.18 4.20 0.00 2.73
47 48 4.207955 ACAGACCATCTTAGATGCGACTA 58.792 43.478 16.18 0.00 0.00 2.59
48 49 3.027412 ACAGACCATCTTAGATGCGACT 58.973 45.455 16.18 11.78 0.00 4.18
49 50 3.376540 GACAGACCATCTTAGATGCGAC 58.623 50.000 16.18 9.97 0.00 5.19
50 51 2.033424 CGACAGACCATCTTAGATGCGA 59.967 50.000 16.18 0.00 0.00 5.10
51 52 2.223595 ACGACAGACCATCTTAGATGCG 60.224 50.000 16.18 14.50 0.00 4.73
52 53 3.067461 AGACGACAGACCATCTTAGATGC 59.933 47.826 16.18 4.40 0.00 3.91
53 54 4.553742 CGAGACGACAGACCATCTTAGATG 60.554 50.000 14.80 14.80 0.00 2.90
54 55 3.562141 CGAGACGACAGACCATCTTAGAT 59.438 47.826 0.00 0.00 0.00 1.98
55 56 2.937149 CGAGACGACAGACCATCTTAGA 59.063 50.000 0.00 0.00 0.00 2.10
56 57 2.678836 ACGAGACGACAGACCATCTTAG 59.321 50.000 0.00 0.00 0.00 2.18
57 58 2.418976 CACGAGACGACAGACCATCTTA 59.581 50.000 0.00 0.00 0.00 2.10
58 59 1.200252 CACGAGACGACAGACCATCTT 59.800 52.381 0.00 0.00 0.00 2.40
59 60 0.805614 CACGAGACGACAGACCATCT 59.194 55.000 0.00 0.00 0.00 2.90
60 61 0.798771 GCACGAGACGACAGACCATC 60.799 60.000 0.00 0.00 0.00 3.51
61 62 1.213013 GCACGAGACGACAGACCAT 59.787 57.895 0.00 0.00 0.00 3.55
62 63 1.853114 GAGCACGAGACGACAGACCA 61.853 60.000 0.00 0.00 0.00 4.02
63 64 1.154188 GAGCACGAGACGACAGACC 60.154 63.158 0.00 0.00 0.00 3.85
64 65 0.238817 AAGAGCACGAGACGACAGAC 59.761 55.000 0.00 0.00 0.00 3.51
65 66 0.952280 AAAGAGCACGAGACGACAGA 59.048 50.000 0.00 0.00 0.00 3.41
66 67 1.332178 GAAAGAGCACGAGACGACAG 58.668 55.000 0.00 0.00 0.00 3.51
67 68 0.666374 TGAAAGAGCACGAGACGACA 59.334 50.000 0.00 0.00 0.00 4.35
68 69 1.914700 GATGAAAGAGCACGAGACGAC 59.085 52.381 0.00 0.00 0.00 4.34
69 70 1.539827 TGATGAAAGAGCACGAGACGA 59.460 47.619 0.00 0.00 0.00 4.20
70 71 1.982612 TGATGAAAGAGCACGAGACG 58.017 50.000 0.00 0.00 0.00 4.18
71 72 5.750547 TCATTATGATGAAAGAGCACGAGAC 59.249 40.000 0.00 0.00 39.29 3.36
72 73 5.906073 TCATTATGATGAAAGAGCACGAGA 58.094 37.500 0.00 0.00 39.29 4.04
73 74 6.782298 ATCATTATGATGAAAGAGCACGAG 57.218 37.500 6.93 0.00 44.96 4.18
74 75 6.512253 GCAATCATTATGATGAAAGAGCACGA 60.512 38.462 8.60 0.00 44.96 4.35
75 76 5.624081 GCAATCATTATGATGAAAGAGCACG 59.376 40.000 8.60 0.00 44.96 5.34
76 77 5.624081 CGCAATCATTATGATGAAAGAGCAC 59.376 40.000 8.60 0.00 44.96 4.40
77 78 5.754778 CGCAATCATTATGATGAAAGAGCA 58.245 37.500 8.60 0.00 44.96 4.26
78 79 4.615961 GCGCAATCATTATGATGAAAGAGC 59.384 41.667 8.60 9.31 44.96 4.09
79 80 5.048921 AGGCGCAATCATTATGATGAAAGAG 60.049 40.000 10.83 3.57 44.96 2.85
80 81 4.823442 AGGCGCAATCATTATGATGAAAGA 59.177 37.500 10.83 0.00 44.96 2.52
81 82 5.117355 AGGCGCAATCATTATGATGAAAG 57.883 39.130 10.83 1.70 44.96 2.62
82 83 5.067544 TGAAGGCGCAATCATTATGATGAAA 59.932 36.000 10.83 0.00 44.96 2.69
83 84 4.579753 TGAAGGCGCAATCATTATGATGAA 59.420 37.500 10.83 0.00 44.96 2.57
84 85 4.136051 TGAAGGCGCAATCATTATGATGA 58.864 39.130 10.83 2.23 45.81 2.92
85 86 4.492791 TGAAGGCGCAATCATTATGATG 57.507 40.909 10.83 4.66 37.15 3.07
86 87 4.617530 GCATGAAGGCGCAATCATTATGAT 60.618 41.667 20.52 1.25 39.09 2.45
87 88 3.304861 GCATGAAGGCGCAATCATTATGA 60.305 43.478 20.52 0.00 34.12 2.15
88 89 2.984471 GCATGAAGGCGCAATCATTATG 59.016 45.455 20.52 14.17 34.12 1.90
89 90 2.624364 TGCATGAAGGCGCAATCATTAT 59.376 40.909 20.52 3.05 34.12 1.28
90 91 2.022934 TGCATGAAGGCGCAATCATTA 58.977 42.857 20.52 12.23 34.12 1.90
91 92 0.818938 TGCATGAAGGCGCAATCATT 59.181 45.000 20.52 7.36 34.12 2.57
92 93 1.000607 GATGCATGAAGGCGCAATCAT 60.001 47.619 18.20 18.20 42.37 2.45
93 94 0.382873 GATGCATGAAGGCGCAATCA 59.617 50.000 10.83 13.64 42.37 2.57
94 95 0.318445 GGATGCATGAAGGCGCAATC 60.318 55.000 10.83 7.29 42.37 2.67
95 96 1.038681 TGGATGCATGAAGGCGCAAT 61.039 50.000 10.83 0.00 42.37 3.56
96 97 1.038681 ATGGATGCATGAAGGCGCAA 61.039 50.000 10.83 0.00 42.37 4.85
97 98 0.179023 TATGGATGCATGAAGGCGCA 60.179 50.000 10.83 0.00 43.45 6.09
98 99 0.520404 CTATGGATGCATGAAGGCGC 59.480 55.000 10.37 0.00 36.28 6.53
99 100 1.888215 ACTATGGATGCATGAAGGCG 58.112 50.000 10.37 0.00 36.28 5.52
100 101 4.823989 AGTAAACTATGGATGCATGAAGGC 59.176 41.667 10.37 0.00 0.00 4.35
101 102 5.471456 GGAGTAAACTATGGATGCATGAAGG 59.529 44.000 10.37 0.41 0.00 3.46
102 103 6.204301 CAGGAGTAAACTATGGATGCATGAAG 59.796 42.308 10.37 2.59 0.00 3.02
103 104 6.057533 CAGGAGTAAACTATGGATGCATGAA 58.942 40.000 10.37 0.00 0.00 2.57
104 105 5.614308 CAGGAGTAAACTATGGATGCATGA 58.386 41.667 10.37 0.00 0.00 3.07
105 106 4.214971 GCAGGAGTAAACTATGGATGCATG 59.785 45.833 10.37 2.72 0.00 4.06
106 107 4.141413 TGCAGGAGTAAACTATGGATGCAT 60.141 41.667 4.68 4.68 36.33 3.96
107 108 3.199727 TGCAGGAGTAAACTATGGATGCA 59.800 43.478 0.00 0.00 38.70 3.96
108 109 3.808728 TGCAGGAGTAAACTATGGATGC 58.191 45.455 0.00 0.00 0.00 3.91
109 110 4.818546 CCTTGCAGGAGTAAACTATGGATG 59.181 45.833 0.00 0.00 37.67 3.51
110 111 4.141390 CCCTTGCAGGAGTAAACTATGGAT 60.141 45.833 0.00 0.00 37.67 3.41
111 112 3.199946 CCCTTGCAGGAGTAAACTATGGA 59.800 47.826 0.00 0.00 37.67 3.41
112 113 3.054361 ACCCTTGCAGGAGTAAACTATGG 60.054 47.826 0.00 0.00 37.67 2.74
113 114 4.222124 ACCCTTGCAGGAGTAAACTATG 57.778 45.455 0.00 0.00 37.67 2.23
114 115 4.929146 AACCCTTGCAGGAGTAAACTAT 57.071 40.909 0.00 0.00 37.67 2.12
115 116 4.506095 GGAAACCCTTGCAGGAGTAAACTA 60.506 45.833 0.00 0.00 37.67 2.24
116 117 3.487372 GAAACCCTTGCAGGAGTAAACT 58.513 45.455 0.00 0.00 37.67 2.66
117 118 2.557056 GGAAACCCTTGCAGGAGTAAAC 59.443 50.000 0.00 0.00 37.67 2.01
118 119 2.175931 TGGAAACCCTTGCAGGAGTAAA 59.824 45.455 0.00 0.00 37.67 2.01
119 120 1.777878 TGGAAACCCTTGCAGGAGTAA 59.222 47.619 0.00 0.00 37.67 2.24
120 121 1.073284 GTGGAAACCCTTGCAGGAGTA 59.927 52.381 0.00 0.00 37.67 2.59
121 122 0.178990 GTGGAAACCCTTGCAGGAGT 60.179 55.000 0.00 0.00 37.67 3.85
122 123 1.237285 CGTGGAAACCCTTGCAGGAG 61.237 60.000 0.00 0.00 40.13 3.69
123 124 1.228124 CGTGGAAACCCTTGCAGGA 60.228 57.895 0.00 0.00 40.13 3.86
124 125 0.250553 TACGTGGAAACCCTTGCAGG 60.251 55.000 0.00 0.00 42.48 4.85
125 126 1.600023 TTACGTGGAAACCCTTGCAG 58.400 50.000 0.00 0.00 32.99 4.41
126 127 2.054232 TTTACGTGGAAACCCTTGCA 57.946 45.000 0.00 0.00 0.00 4.08
127 128 3.439895 TTTTTACGTGGAAACCCTTGC 57.560 42.857 0.00 0.00 0.00 4.01
128 129 4.038162 TGGATTTTTACGTGGAAACCCTTG 59.962 41.667 0.00 0.00 0.00 3.61
129 130 4.216708 TGGATTTTTACGTGGAAACCCTT 58.783 39.130 0.00 0.00 0.00 3.95
130 131 3.834938 TGGATTTTTACGTGGAAACCCT 58.165 40.909 0.00 0.00 0.00 4.34
131 132 4.021807 ACATGGATTTTTACGTGGAAACCC 60.022 41.667 0.00 0.00 0.00 4.11
132 133 5.048294 AGACATGGATTTTTACGTGGAAACC 60.048 40.000 0.00 0.00 0.00 3.27
133 134 6.009115 AGACATGGATTTTTACGTGGAAAC 57.991 37.500 0.00 0.00 0.00 2.78
134 135 5.106869 CGAGACATGGATTTTTACGTGGAAA 60.107 40.000 0.00 0.00 0.00 3.13
135 136 4.390603 CGAGACATGGATTTTTACGTGGAA 59.609 41.667 0.00 0.00 0.00 3.53
136 137 3.930229 CGAGACATGGATTTTTACGTGGA 59.070 43.478 0.00 0.00 0.00 4.02
137 138 3.682858 ACGAGACATGGATTTTTACGTGG 59.317 43.478 0.00 0.00 0.00 4.94
138 139 4.921470 ACGAGACATGGATTTTTACGTG 57.079 40.909 0.00 0.00 0.00 4.49
139 140 7.605410 AATAACGAGACATGGATTTTTACGT 57.395 32.000 0.00 0.00 0.00 3.57
140 141 9.580916 CATAATAACGAGACATGGATTTTTACG 57.419 33.333 0.00 0.00 0.00 3.18
144 145 9.052759 GGTACATAATAACGAGACATGGATTTT 57.947 33.333 0.00 0.00 0.00 1.82
145 146 8.208224 TGGTACATAATAACGAGACATGGATTT 58.792 33.333 0.00 0.00 0.00 2.17
146 147 7.656137 GTGGTACATAATAACGAGACATGGATT 59.344 37.037 0.00 0.00 44.52 3.01
147 148 7.152645 GTGGTACATAATAACGAGACATGGAT 58.847 38.462 0.00 0.00 44.52 3.41
148 149 6.509656 GTGGTACATAATAACGAGACATGGA 58.490 40.000 0.00 0.00 44.52 3.41
149 150 5.401376 CGTGGTACATAATAACGAGACATGG 59.599 44.000 0.00 0.00 44.52 3.66
150 151 5.107989 GCGTGGTACATAATAACGAGACATG 60.108 44.000 0.00 0.00 44.52 3.21
151 152 4.980434 GCGTGGTACATAATAACGAGACAT 59.020 41.667 0.00 0.00 44.52 3.06
152 153 4.353737 GCGTGGTACATAATAACGAGACA 58.646 43.478 0.00 0.00 44.52 3.41
153 154 3.419922 CGCGTGGTACATAATAACGAGAC 59.580 47.826 0.00 0.00 44.52 3.36
154 155 3.065233 ACGCGTGGTACATAATAACGAGA 59.935 43.478 12.93 0.00 44.52 4.04
155 156 3.179010 CACGCGTGGTACATAATAACGAG 59.821 47.826 31.15 0.00 44.52 4.18
156 157 3.107407 CACGCGTGGTACATAATAACGA 58.893 45.455 31.15 0.00 44.52 3.85
157 158 2.853594 ACACGCGTGGTACATAATAACG 59.146 45.455 39.21 12.78 44.52 3.18
158 159 4.845621 AACACGCGTGGTACATAATAAC 57.154 40.909 39.21 0.00 44.52 1.89
159 160 4.031539 CGAAACACGCGTGGTACATAATAA 59.968 41.667 39.21 0.00 36.20 1.40
160 161 3.547068 CGAAACACGCGTGGTACATAATA 59.453 43.478 39.21 0.00 36.20 0.98
161 162 2.346244 CGAAACACGCGTGGTACATAAT 59.654 45.455 39.21 20.38 36.20 1.28
162 163 1.720316 CGAAACACGCGTGGTACATAA 59.280 47.619 39.21 0.00 36.20 1.90
163 164 1.335780 ACGAAACACGCGTGGTACATA 60.336 47.619 39.21 0.00 44.08 2.29
164 165 0.598158 ACGAAACACGCGTGGTACAT 60.598 50.000 39.21 21.99 44.08 2.29
165 166 1.208009 GACGAAACACGCGTGGTACA 61.208 55.000 39.21 0.00 46.94 2.90
166 167 1.484232 GACGAAACACGCGTGGTAC 59.516 57.895 39.21 27.05 46.94 3.34
167 168 2.010286 CGACGAAACACGCGTGGTA 61.010 57.895 39.21 0.00 46.94 3.25
168 169 3.324671 CGACGAAACACGCGTGGT 61.325 61.111 39.21 34.01 46.94 4.16
169 170 2.369629 ATCGACGAAACACGCGTGG 61.370 57.895 39.21 25.12 46.94 4.94
170 171 1.225104 CATCGACGAAACACGCGTG 60.225 57.895 35.99 35.99 46.94 5.34
171 172 0.935831 TTCATCGACGAAACACGCGT 60.936 50.000 5.58 5.58 46.94 6.01
172 173 0.159973 TTTCATCGACGAAACACGCG 59.840 50.000 3.53 3.53 46.94 6.01
173 174 2.222624 CTTTTCATCGACGAAACACGC 58.777 47.619 6.10 0.00 46.94 5.34
175 176 2.095919 CCCCTTTTCATCGACGAAACAC 60.096 50.000 6.10 0.00 34.68 3.32
176 177 2.147958 CCCCTTTTCATCGACGAAACA 58.852 47.619 6.10 0.00 34.68 2.83
202 203 1.067846 GGAGCAATGGAACCCGTTTTC 60.068 52.381 0.00 0.00 29.10 2.29
213 214 1.402968 CGGAACTGATTGGAGCAATGG 59.597 52.381 0.00 0.00 33.90 3.16
287 288 5.933617 TCCCTCTACATTTCAGATCCAATG 58.066 41.667 7.88 7.88 36.59 2.82
396 397 1.538047 TCAGAATTCAGCTGGCAACC 58.462 50.000 15.13 0.00 34.20 3.77
427 428 3.589288 AGTTGCAGGGAGAAGTTATCCTT 59.411 43.478 15.93 5.89 37.01 3.36
449 450 8.595362 TTTGAGATCCAGTAGTTAATCAGAGA 57.405 34.615 0.00 0.00 0.00 3.10
450 451 9.829507 ATTTTGAGATCCAGTAGTTAATCAGAG 57.170 33.333 0.00 0.00 0.00 3.35
498 499 9.368416 AGTGCTATTGTAGATTGGAGAGTTATA 57.632 33.333 0.00 0.00 0.00 0.98
499 500 8.147058 CAGTGCTATTGTAGATTGGAGAGTTAT 58.853 37.037 0.00 0.00 0.00 1.89
500 501 7.124298 ACAGTGCTATTGTAGATTGGAGAGTTA 59.876 37.037 0.00 0.00 0.00 2.24
501 502 6.070538 ACAGTGCTATTGTAGATTGGAGAGTT 60.071 38.462 0.00 0.00 0.00 3.01
502 503 5.423610 ACAGTGCTATTGTAGATTGGAGAGT 59.576 40.000 0.00 0.00 0.00 3.24
503 504 5.911752 ACAGTGCTATTGTAGATTGGAGAG 58.088 41.667 0.00 0.00 0.00 3.20
504 505 5.939764 ACAGTGCTATTGTAGATTGGAGA 57.060 39.130 0.00 0.00 0.00 3.71
505 506 6.040955 TCCTACAGTGCTATTGTAGATTGGAG 59.959 42.308 18.27 6.41 46.98 3.86
506 507 5.897250 TCCTACAGTGCTATTGTAGATTGGA 59.103 40.000 18.27 9.42 46.98 3.53
537 538 2.878580 CAGCTAAGTGAGAGAGTGCTG 58.121 52.381 0.00 0.00 39.98 4.41
657 662 8.048534 TGGTAGTTAGTTAGTGCTAGTACTTG 57.951 38.462 19.04 0.00 32.19 3.16
663 668 9.509956 AGAGATATGGTAGTTAGTTAGTGCTAG 57.490 37.037 0.00 0.00 0.00 3.42
709 717 7.770897 GGTGGTTAGTTAGTGCTAGTAGTAGTA 59.229 40.741 6.47 0.00 0.00 1.82
710 718 6.601217 GGTGGTTAGTTAGTGCTAGTAGTAGT 59.399 42.308 6.47 1.01 0.00 2.73
711 719 6.600822 TGGTGGTTAGTTAGTGCTAGTAGTAG 59.399 42.308 0.00 0.00 0.00 2.57
808 816 3.454858 AGTGTAGATGGGATGAAGGTGT 58.545 45.455 0.00 0.00 0.00 4.16
907 915 8.774183 TGTAGGTGGAGGTGTATATATTTTGTT 58.226 33.333 0.00 0.00 0.00 2.83
953 972 3.119566 GGTTCTTCCTGTGTACTACTCCG 60.120 52.174 0.00 0.00 0.00 4.63
954 973 3.195182 GGGTTCTTCCTGTGTACTACTCC 59.805 52.174 0.00 0.00 36.25 3.85
955 974 3.119566 CGGGTTCTTCCTGTGTACTACTC 60.120 52.174 0.00 0.00 37.78 2.59
956 975 2.824341 CGGGTTCTTCCTGTGTACTACT 59.176 50.000 0.00 0.00 37.78 2.57
957 976 2.094338 CCGGGTTCTTCCTGTGTACTAC 60.094 54.545 0.00 0.00 40.86 2.73
958 977 2.173519 CCGGGTTCTTCCTGTGTACTA 58.826 52.381 0.00 0.00 40.86 1.82
959 978 0.974383 CCGGGTTCTTCCTGTGTACT 59.026 55.000 0.00 0.00 40.86 2.73
1332 1351 3.775261 ACAGACCTTTTAACCCGCTTA 57.225 42.857 0.00 0.00 0.00 3.09
1409 1432 6.320164 GCACTATACCACATGAACCCATAAAA 59.680 38.462 0.00 0.00 0.00 1.52
1413 1436 3.435026 GGCACTATACCACATGAACCCAT 60.435 47.826 0.00 0.00 0.00 4.00
1415 1438 2.092646 TGGCACTATACCACATGAACCC 60.093 50.000 0.00 0.00 30.29 4.11
1416 1439 3.118408 TCTGGCACTATACCACATGAACC 60.118 47.826 0.00 0.00 32.49 3.62
1425 1468 3.131755 ACCGTTTACTCTGGCACTATACC 59.868 47.826 0.00 0.00 0.00 2.73
1430 1474 2.522185 TCTACCGTTTACTCTGGCACT 58.478 47.619 0.00 0.00 0.00 4.40
1431 1475 3.308438 TTCTACCGTTTACTCTGGCAC 57.692 47.619 0.00 0.00 0.00 5.01
1433 1477 3.431233 GTGTTTCTACCGTTTACTCTGGC 59.569 47.826 0.00 0.00 0.00 4.85
1478 1522 1.466950 CGCCAACCAAATCGAGCTTTA 59.533 47.619 0.00 0.00 0.00 1.85
1479 1523 0.240945 CGCCAACCAAATCGAGCTTT 59.759 50.000 0.00 0.00 0.00 3.51
1480 1524 0.605319 TCGCCAACCAAATCGAGCTT 60.605 50.000 0.00 0.00 0.00 3.74
1520 1564 5.752892 TGGCTCTAGAGATACAGTAAACG 57.247 43.478 24.24 0.00 0.00 3.60
1567 1621 5.757099 TTTCACTGGGGTAAAACCAAAAA 57.243 34.783 0.00 0.00 41.02 1.94
1606 1660 7.390027 ACAGCTAGTCTTGATTTATGAACACT 58.610 34.615 0.00 0.00 0.00 3.55
1621 1675 7.934120 AGAGTTGTTAATTTGAACAGCTAGTCT 59.066 33.333 9.59 4.07 46.83 3.24
1678 1732 7.141363 CAGAGTCGAATCAAAATTTCCAGTTT 58.859 34.615 16.10 0.00 0.00 2.66
1681 1735 5.091431 GCAGAGTCGAATCAAAATTTCCAG 58.909 41.667 16.10 0.00 0.00 3.86
1770 1824 2.707849 GGCGACAGCGAAGGTAGGA 61.708 63.158 0.00 0.00 46.35 2.94
1782 1836 4.671590 TGACCTCCTCCGGCGACA 62.672 66.667 9.30 0.00 0.00 4.35
1955 2009 0.324943 GGAGCAGCCACCTAAACAGA 59.675 55.000 0.00 0.00 36.34 3.41
2000 2054 1.227999 CGCACGCAAGAAGAGGGAAA 61.228 55.000 0.00 0.00 43.62 3.13
2048 2124 5.483937 TCCAAGCTTGAAATGTACTCCTAGA 59.516 40.000 28.05 8.01 0.00 2.43
2090 2166 6.621316 TTTACGCCTGAACAAGAACAATTA 57.379 33.333 0.00 0.00 0.00 1.40
2093 2169 6.811253 ATATTTACGCCTGAACAAGAACAA 57.189 33.333 0.00 0.00 0.00 2.83
2095 2171 7.971455 AGTAATATTTACGCCTGAACAAGAAC 58.029 34.615 0.00 0.00 0.00 3.01
2099 2175 7.908827 TTGAGTAATATTTACGCCTGAACAA 57.091 32.000 0.00 0.00 0.00 2.83
2100 2176 7.908827 TTTGAGTAATATTTACGCCTGAACA 57.091 32.000 0.00 0.00 0.00 3.18
2101 2177 8.395633 ACATTTGAGTAATATTTACGCCTGAAC 58.604 33.333 0.00 0.00 0.00 3.18
2102 2178 8.394877 CACATTTGAGTAATATTTACGCCTGAA 58.605 33.333 0.00 0.00 0.00 3.02
2160 2236 6.006449 AGTATGAATGTATGATGGGAAAGCC 58.994 40.000 0.00 0.00 0.00 4.35
2163 2239 9.725019 GATACAGTATGAATGTATGATGGGAAA 57.275 33.333 4.45 0.00 42.48 3.13
2167 2243 7.855375 AGGGATACAGTATGAATGTATGATGG 58.145 38.462 4.45 0.00 42.48 3.51
2194 2272 5.122396 CAGAGTTTGGTGTATTCAGCTTACC 59.878 44.000 3.15 0.00 41.91 2.85
2210 2288 7.027760 TGTTACTACTAGATTCGCAGAGTTTG 58.972 38.462 0.00 0.00 38.43 2.93
2269 2347 2.666190 TGCGCTGACTGCCTGTTC 60.666 61.111 9.73 0.00 38.78 3.18
2398 2476 9.225436 AGTTTCTTGGTTCTTCTGATATCTTTC 57.775 33.333 3.98 0.00 0.00 2.62
2423 2501 5.524284 AGTATTCAGTATGCGCAAGACTAG 58.476 41.667 23.28 17.94 41.00 2.57
2517 2597 3.736252 GTGCTAGGTGTATGCATAAGTCG 59.264 47.826 8.28 0.00 39.00 4.18
2562 2642 6.466308 AGCAAACAACACTGAAAAGAAAAC 57.534 33.333 0.00 0.00 0.00 2.43
2601 2683 5.255397 TCCACTCCCAAATGAACAGTAAT 57.745 39.130 0.00 0.00 0.00 1.89
2693 2775 9.023967 GGATTTCATCAATGGTTAAAATTCTCG 57.976 33.333 0.00 0.00 0.00 4.04
2703 2785 7.943447 TCAAATTTTGGGATTTCATCAATGGTT 59.057 29.630 9.18 0.00 0.00 3.67
2704 2786 7.460071 TCAAATTTTGGGATTTCATCAATGGT 58.540 30.769 9.18 0.00 0.00 3.55
2707 2789 8.962679 CCAATCAAATTTTGGGATTTCATCAAT 58.037 29.630 9.18 0.00 40.00 2.57
2708 2790 7.943447 ACCAATCAAATTTTGGGATTTCATCAA 59.057 29.630 11.23 0.00 46.49 2.57
2709 2791 7.460071 ACCAATCAAATTTTGGGATTTCATCA 58.540 30.769 11.23 0.00 46.49 3.07
2710 2792 7.926674 ACCAATCAAATTTTGGGATTTCATC 57.073 32.000 11.23 0.00 46.49 2.92
2928 3038 3.503748 GCACTGGAGCCCATATTTATCAC 59.496 47.826 0.00 0.00 30.82 3.06
3133 3243 2.366533 CCTCTTGATGAGCTGCATTGT 58.633 47.619 1.02 0.00 41.35 2.71
3296 3406 2.734346 GGTTGCGCCATGTTGTGC 60.734 61.111 4.18 1.04 42.05 4.57
3434 3544 5.836898 ACACAATTATCGGTAGGGATGAGTA 59.163 40.000 0.00 0.00 0.00 2.59
3527 3637 8.605746 CAAACCGAAGACCGAATAAATGTAATA 58.394 33.333 0.00 0.00 41.76 0.98
3571 3736 8.756864 GTCAATAAAAGCGTCCTTTATAGAGAG 58.243 37.037 0.00 0.00 40.30 3.20
3572 3737 8.475639 AGTCAATAAAAGCGTCCTTTATAGAGA 58.524 33.333 0.00 0.00 40.30 3.10
3573 3738 8.649973 AGTCAATAAAAGCGTCCTTTATAGAG 57.350 34.615 0.00 0.00 40.30 2.43
3618 3783 2.225467 TGTGTGTTCATTCCGATTGCA 58.775 42.857 0.00 0.00 0.00 4.08
3619 3784 2.987413 TGTGTGTTCATTCCGATTGC 57.013 45.000 0.00 0.00 0.00 3.56
3623 3788 2.811431 GTTGGATGTGTGTTCATTCCGA 59.189 45.455 0.00 0.00 33.93 4.55
3639 3804 8.162746 TGTCATCATAATTATGCATAGGTTGGA 58.837 33.333 18.89 8.81 33.76 3.53
3708 3873 8.556194 GTTTACATGATGTAGTTCACTTTGACA 58.444 33.333 5.34 0.00 33.92 3.58
3709 3874 8.015658 GGTTTACATGATGTAGTTCACTTTGAC 58.984 37.037 5.34 0.00 33.92 3.18
3710 3875 7.717436 TGGTTTACATGATGTAGTTCACTTTGA 59.283 33.333 5.34 0.00 33.92 2.69
3711 3876 7.870826 TGGTTTACATGATGTAGTTCACTTTG 58.129 34.615 5.34 0.00 33.92 2.77
3715 3880 7.609760 TGATGGTTTACATGATGTAGTTCAC 57.390 36.000 5.34 2.38 40.72 3.18
3716 3881 7.663493 TGTTGATGGTTTACATGATGTAGTTCA 59.337 33.333 5.34 5.97 40.72 3.18
3754 3932 4.034394 CCCATATTGTGAGTGTTGTCATCG 59.966 45.833 0.00 0.00 0.00 3.84
3760 3938 6.091169 GCAATTTTCCCATATTGTGAGTGTTG 59.909 38.462 0.00 0.00 34.88 3.33
3767 3945 6.649973 TGTTGAAGCAATTTTCCCATATTGTG 59.350 34.615 0.00 0.00 34.88 3.33
3769 3947 7.670009 TTGTTGAAGCAATTTTCCCATATTG 57.330 32.000 0.00 0.00 35.39 1.90
3771 3949 7.550196 GTCATTGTTGAAGCAATTTTCCCATAT 59.450 33.333 0.00 0.00 37.00 1.78
3829 4007 2.643551 GTGGGTGGATTTGACGATGAT 58.356 47.619 0.00 0.00 0.00 2.45
3830 4008 1.674519 CGTGGGTGGATTTGACGATGA 60.675 52.381 0.00 0.00 31.71 2.92
3892 4070 5.291971 GCATTTGTCTCAAGTTGTTTGGAT 58.708 37.500 2.11 0.00 37.39 3.41
3909 4087 0.893270 TCCCGTTGTGGAGGCATTTG 60.893 55.000 0.00 0.00 42.00 2.32
3924 4102 1.153168 GGTGTCCCACATCATCCCG 60.153 63.158 0.00 0.00 35.86 5.14
3937 4115 2.438434 CGAGGCAATGGGGGTGTC 60.438 66.667 0.00 0.00 0.00 3.67
3943 4121 2.009774 CTAGTTGAACGAGGCAATGGG 58.990 52.381 0.00 0.00 0.00 4.00
3944 4122 2.699954 ACTAGTTGAACGAGGCAATGG 58.300 47.619 10.14 0.00 0.00 3.16
3954 4132 6.031751 AGGACTGATCTGAACTAGTTGAAC 57.968 41.667 14.14 4.64 0.00 3.18
3961 4139 8.647796 TGAAAACTTTAGGACTGATCTGAACTA 58.352 33.333 6.60 5.46 0.00 2.24
3974 4152 7.607991 CCAAGCTCTAGAATGAAAACTTTAGGA 59.392 37.037 0.00 0.00 0.00 2.94
3988 4166 3.519510 ACCATTAGTGCCAAGCTCTAGAA 59.480 43.478 0.00 0.00 36.29 2.10
3992 4170 2.119801 CACCATTAGTGCCAAGCTCT 57.880 50.000 0.00 0.00 40.28 4.09
4007 4185 2.851263 ACTAACGGAAATCTGCACCA 57.149 45.000 0.00 0.00 0.00 4.17
4010 4188 2.835764 AGGGTACTAACGGAAATCTGCA 59.164 45.455 0.00 0.00 0.00 4.41
4019 4197 1.140252 CCCAATCCAGGGTACTAACGG 59.860 57.143 0.00 0.00 44.24 4.44
4020 4198 2.614829 CCCAATCCAGGGTACTAACG 57.385 55.000 0.00 0.00 44.24 3.18
4032 4210 0.962356 CACTGACAGGCACCCAATCC 60.962 60.000 7.51 0.00 0.00 3.01
4034 4212 1.604593 GCACTGACAGGCACCCAAT 60.605 57.895 7.51 0.00 0.00 3.16
4045 4223 4.932146 ACATAAAGGTTTGTTGCACTGAC 58.068 39.130 0.00 0.00 0.00 3.51
4046 4224 6.264292 ACATACATAAAGGTTTGTTGCACTGA 59.736 34.615 0.00 0.00 30.32 3.41
4047 4225 6.446318 ACATACATAAAGGTTTGTTGCACTG 58.554 36.000 0.00 0.00 30.32 3.66
4048 4226 6.648879 ACATACATAAAGGTTTGTTGCACT 57.351 33.333 0.00 0.00 30.32 4.40
4049 4227 7.104326 CAACATACATAAAGGTTTGTTGCAC 57.896 36.000 14.74 0.00 46.12 4.57
4053 4231 5.305644 TGGGCAACATACATAAAGGTTTGTT 59.694 36.000 0.00 0.00 41.51 2.83
4054 4232 4.835615 TGGGCAACATACATAAAGGTTTGT 59.164 37.500 0.00 0.00 34.99 2.83
4055 4233 5.184864 TCTGGGCAACATACATAAAGGTTTG 59.815 40.000 0.00 0.00 39.74 2.93
4056 4234 5.185056 GTCTGGGCAACATACATAAAGGTTT 59.815 40.000 0.00 0.00 39.74 3.27
4057 4235 4.705023 GTCTGGGCAACATACATAAAGGTT 59.295 41.667 0.00 0.00 39.74 3.50
4058 4236 4.018415 AGTCTGGGCAACATACATAAAGGT 60.018 41.667 0.00 0.00 39.74 3.50
4059 4237 4.336433 CAGTCTGGGCAACATACATAAAGG 59.664 45.833 0.00 0.00 39.74 3.11
4060 4238 4.943705 ACAGTCTGGGCAACATACATAAAG 59.056 41.667 4.53 0.00 39.74 1.85
4061 4239 4.917385 ACAGTCTGGGCAACATACATAAA 58.083 39.130 4.53 0.00 39.74 1.40
4062 4240 4.568072 ACAGTCTGGGCAACATACATAA 57.432 40.909 4.53 0.00 39.74 1.90
4063 4241 4.468153 TGTACAGTCTGGGCAACATACATA 59.532 41.667 4.53 0.00 39.74 2.29
4064 4242 3.263170 TGTACAGTCTGGGCAACATACAT 59.737 43.478 4.53 0.00 39.74 2.29
4065 4243 2.635427 TGTACAGTCTGGGCAACATACA 59.365 45.455 4.53 0.00 39.74 2.29
4066 4244 3.000727 GTGTACAGTCTGGGCAACATAC 58.999 50.000 4.53 0.00 39.74 2.39
4067 4245 2.635427 TGTGTACAGTCTGGGCAACATA 59.365 45.455 4.53 0.00 39.74 2.29
4068 4246 1.419762 TGTGTACAGTCTGGGCAACAT 59.580 47.619 4.53 0.00 39.74 2.71
4069 4247 0.833949 TGTGTACAGTCTGGGCAACA 59.166 50.000 4.53 0.68 39.74 3.33
4070 4248 1.512926 CTGTGTACAGTCTGGGCAAC 58.487 55.000 4.53 0.00 39.09 4.17
4071 4249 0.396435 CCTGTGTACAGTCTGGGCAA 59.604 55.000 10.80 0.00 42.27 4.52
4072 4250 2.057830 CCTGTGTACAGTCTGGGCA 58.942 57.895 10.80 0.00 42.27 5.36
4073 4251 1.376037 GCCTGTGTACAGTCTGGGC 60.376 63.158 10.80 2.28 42.27 5.36
4074 4252 1.079819 CGCCTGTGTACAGTCTGGG 60.080 63.158 10.80 0.00 42.27 4.45
4075 4253 1.738099 GCGCCTGTGTACAGTCTGG 60.738 63.158 10.80 0.02 42.27 3.86
4076 4254 0.599991 TTGCGCCTGTGTACAGTCTG 60.600 55.000 4.18 0.00 42.27 3.51
4077 4255 0.321671 ATTGCGCCTGTGTACAGTCT 59.678 50.000 4.18 0.00 42.27 3.24
4078 4256 2.004583 TATTGCGCCTGTGTACAGTC 57.995 50.000 4.18 0.00 42.27 3.51
4079 4257 2.073816 GTTATTGCGCCTGTGTACAGT 58.926 47.619 4.18 0.00 42.27 3.55
4080 4258 2.073056 TGTTATTGCGCCTGTGTACAG 58.927 47.619 4.18 5.05 43.40 2.74
4081 4259 2.171341 TGTTATTGCGCCTGTGTACA 57.829 45.000 4.18 0.00 0.00 2.90
4082 4260 2.159572 CCTTGTTATTGCGCCTGTGTAC 60.160 50.000 4.18 0.00 0.00 2.90
4083 4261 2.080693 CCTTGTTATTGCGCCTGTGTA 58.919 47.619 4.18 0.00 0.00 2.90
4084 4262 0.881118 CCTTGTTATTGCGCCTGTGT 59.119 50.000 4.18 0.00 0.00 3.72
4085 4263 0.171007 CCCTTGTTATTGCGCCTGTG 59.829 55.000 4.18 0.00 0.00 3.66
4086 4264 0.251165 ACCCTTGTTATTGCGCCTGT 60.251 50.000 4.18 0.00 0.00 4.00
4087 4265 1.400494 GTACCCTTGTTATTGCGCCTG 59.600 52.381 4.18 0.00 0.00 4.85
4088 4266 1.003812 TGTACCCTTGTTATTGCGCCT 59.996 47.619 4.18 0.00 0.00 5.52
4089 4267 1.455248 TGTACCCTTGTTATTGCGCC 58.545 50.000 4.18 0.00 0.00 6.53
4090 4268 2.226912 TGTTGTACCCTTGTTATTGCGC 59.773 45.455 0.00 0.00 0.00 6.09
4091 4269 3.669557 GCTGTTGTACCCTTGTTATTGCG 60.670 47.826 0.00 0.00 0.00 4.85
4092 4270 3.254657 TGCTGTTGTACCCTTGTTATTGC 59.745 43.478 0.00 0.00 0.00 3.56
4093 4271 5.446143 TTGCTGTTGTACCCTTGTTATTG 57.554 39.130 0.00 0.00 0.00 1.90
4094 4272 7.576856 GCTTATTGCTGTTGTACCCTTGTTATT 60.577 37.037 0.00 0.00 38.95 1.40
4095 4273 6.127730 GCTTATTGCTGTTGTACCCTTGTTAT 60.128 38.462 0.00 0.00 38.95 1.89
4096 4274 5.182380 GCTTATTGCTGTTGTACCCTTGTTA 59.818 40.000 0.00 0.00 38.95 2.41
4097 4275 4.022329 GCTTATTGCTGTTGTACCCTTGTT 60.022 41.667 0.00 0.00 38.95 2.83
4098 4276 3.506067 GCTTATTGCTGTTGTACCCTTGT 59.494 43.478 0.00 0.00 38.95 3.16
4099 4277 4.096732 GCTTATTGCTGTTGTACCCTTG 57.903 45.455 0.00 0.00 38.95 3.61
4112 4290 2.424956 CCTTGTCTTGGGAGCTTATTGC 59.575 50.000 0.00 0.00 43.29 3.56
4113 4291 2.424956 GCCTTGTCTTGGGAGCTTATTG 59.575 50.000 0.00 0.00 0.00 1.90
4114 4292 2.621668 GGCCTTGTCTTGGGAGCTTATT 60.622 50.000 0.00 0.00 0.00 1.40
4115 4293 1.064389 GGCCTTGTCTTGGGAGCTTAT 60.064 52.381 0.00 0.00 0.00 1.73
4116 4294 0.328258 GGCCTTGTCTTGGGAGCTTA 59.672 55.000 0.00 0.00 0.00 3.09
4117 4295 1.075659 GGCCTTGTCTTGGGAGCTT 59.924 57.895 0.00 0.00 0.00 3.74
4118 4296 1.719063 TTGGCCTTGTCTTGGGAGCT 61.719 55.000 3.32 0.00 0.00 4.09
4119 4297 1.228552 TTGGCCTTGTCTTGGGAGC 60.229 57.895 3.32 0.00 0.00 4.70
4120 4298 1.246737 GCTTGGCCTTGTCTTGGGAG 61.247 60.000 3.32 0.00 0.00 4.30
4121 4299 1.228552 GCTTGGCCTTGTCTTGGGA 60.229 57.895 3.32 0.00 0.00 4.37
4122 4300 2.278330 GGCTTGGCCTTGTCTTGGG 61.278 63.158 3.32 0.00 46.69 4.12
4123 4301 3.369921 GGCTTGGCCTTGTCTTGG 58.630 61.111 3.32 0.00 46.69 3.61
4132 4310 4.499451 GAGCTATCTCTCTGGCTTGGCC 62.499 59.091 0.00 0.00 41.64 5.36
4133 4311 0.758123 AGCTATCTCTCTGGCTTGGC 59.242 55.000 0.00 0.00 0.00 4.52
4134 4312 2.318908 AGAGCTATCTCTCTGGCTTGG 58.681 52.381 0.00 0.00 46.32 3.61
4144 4322 5.543507 TTGATCCCTCAAAGAGCTATCTC 57.456 43.478 0.00 0.00 38.43 2.75
4145 4323 5.965033 TTTGATCCCTCAAAGAGCTATCT 57.035 39.130 0.00 0.00 44.46 1.98
4154 4332 0.323360 CCGCCCTTTGATCCCTCAAA 60.323 55.000 1.29 1.29 46.53 2.69
4155 4333 1.204786 TCCGCCCTTTGATCCCTCAA 61.205 55.000 0.00 0.00 39.62 3.02
4156 4334 0.988145 ATCCGCCCTTTGATCCCTCA 60.988 55.000 0.00 0.00 0.00 3.86
4157 4335 0.250510 GATCCGCCCTTTGATCCCTC 60.251 60.000 0.00 0.00 32.92 4.30
4158 4336 0.988145 TGATCCGCCCTTTGATCCCT 60.988 55.000 0.00 0.00 37.23 4.20
4159 4337 0.106719 TTGATCCGCCCTTTGATCCC 60.107 55.000 0.00 0.00 37.23 3.85
4160 4338 1.134098 TCTTGATCCGCCCTTTGATCC 60.134 52.381 0.00 0.00 37.23 3.36
4161 4339 2.332063 TCTTGATCCGCCCTTTGATC 57.668 50.000 0.00 0.00 38.27 2.92
4162 4340 2.239654 TCTTCTTGATCCGCCCTTTGAT 59.760 45.455 0.00 0.00 0.00 2.57
4163 4341 1.628340 TCTTCTTGATCCGCCCTTTGA 59.372 47.619 0.00 0.00 0.00 2.69
4164 4342 1.740025 GTCTTCTTGATCCGCCCTTTG 59.260 52.381 0.00 0.00 0.00 2.77
4165 4343 1.340114 GGTCTTCTTGATCCGCCCTTT 60.340 52.381 0.00 0.00 0.00 3.11
4166 4344 0.253327 GGTCTTCTTGATCCGCCCTT 59.747 55.000 0.00 0.00 0.00 3.95
4167 4345 0.909610 TGGTCTTCTTGATCCGCCCT 60.910 55.000 0.00 0.00 0.00 5.19
4168 4346 0.035439 TTGGTCTTCTTGATCCGCCC 60.035 55.000 0.00 0.00 0.00 6.13
4169 4347 1.066143 TCTTGGTCTTCTTGATCCGCC 60.066 52.381 0.00 0.00 0.00 6.13
4170 4348 2.003301 GTCTTGGTCTTCTTGATCCGC 58.997 52.381 0.00 0.00 0.00 5.54
4171 4349 3.319137 TGTCTTGGTCTTCTTGATCCG 57.681 47.619 0.00 0.00 0.00 4.18
4172 4350 3.438434 GCTTGTCTTGGTCTTCTTGATCC 59.562 47.826 0.00 0.00 0.00 3.36
4173 4351 4.322567 AGCTTGTCTTGGTCTTCTTGATC 58.677 43.478 0.00 0.00 0.00 2.92
4174 4352 4.363991 AGCTTGTCTTGGTCTTCTTGAT 57.636 40.909 0.00 0.00 0.00 2.57
4175 4353 3.845781 AGCTTGTCTTGGTCTTCTTGA 57.154 42.857 0.00 0.00 0.00 3.02
4176 4354 4.453819 CCTTAGCTTGTCTTGGTCTTCTTG 59.546 45.833 0.00 0.00 0.00 3.02
4177 4355 4.505742 CCCTTAGCTTGTCTTGGTCTTCTT 60.506 45.833 0.00 0.00 0.00 2.52
4178 4356 3.008485 CCCTTAGCTTGTCTTGGTCTTCT 59.992 47.826 0.00 0.00 0.00 2.85
4179 4357 3.008049 TCCCTTAGCTTGTCTTGGTCTTC 59.992 47.826 0.00 0.00 0.00 2.87
4180 4358 2.979678 TCCCTTAGCTTGTCTTGGTCTT 59.020 45.455 0.00 0.00 0.00 3.01
4181 4359 2.621070 TCCCTTAGCTTGTCTTGGTCT 58.379 47.619 0.00 0.00 0.00 3.85
4182 4360 3.075148 GTTCCCTTAGCTTGTCTTGGTC 58.925 50.000 0.00 0.00 0.00 4.02
4183 4361 2.441750 TGTTCCCTTAGCTTGTCTTGGT 59.558 45.455 0.00 0.00 0.00 3.67
4184 4362 3.140325 TGTTCCCTTAGCTTGTCTTGG 57.860 47.619 0.00 0.00 0.00 3.61
4185 4363 4.214332 GTCTTGTTCCCTTAGCTTGTCTTG 59.786 45.833 0.00 0.00 0.00 3.02
4186 4364 4.141482 TGTCTTGTTCCCTTAGCTTGTCTT 60.141 41.667 0.00 0.00 0.00 3.01
4187 4365 3.391296 TGTCTTGTTCCCTTAGCTTGTCT 59.609 43.478 0.00 0.00 0.00 3.41
4188 4366 3.740115 TGTCTTGTTCCCTTAGCTTGTC 58.260 45.455 0.00 0.00 0.00 3.18
4189 4367 3.857157 TGTCTTGTTCCCTTAGCTTGT 57.143 42.857 0.00 0.00 0.00 3.16
4190 4368 4.154918 GTGATGTCTTGTTCCCTTAGCTTG 59.845 45.833 0.00 0.00 0.00 4.01
4191 4369 4.042187 AGTGATGTCTTGTTCCCTTAGCTT 59.958 41.667 0.00 0.00 0.00 3.74
4192 4370 3.584848 AGTGATGTCTTGTTCCCTTAGCT 59.415 43.478 0.00 0.00 0.00 3.32
4193 4371 3.944087 AGTGATGTCTTGTTCCCTTAGC 58.056 45.455 0.00 0.00 0.00 3.09
4194 4372 6.070767 TCCTTAGTGATGTCTTGTTCCCTTAG 60.071 42.308 0.00 0.00 0.00 2.18
4195 4373 5.783360 TCCTTAGTGATGTCTTGTTCCCTTA 59.217 40.000 0.00 0.00 0.00 2.69
4196 4374 4.597507 TCCTTAGTGATGTCTTGTTCCCTT 59.402 41.667 0.00 0.00 0.00 3.95
4197 4375 4.168101 TCCTTAGTGATGTCTTGTTCCCT 58.832 43.478 0.00 0.00 0.00 4.20
4198 4376 4.553330 TCCTTAGTGATGTCTTGTTCCC 57.447 45.455 0.00 0.00 0.00 3.97
4199 4377 6.147985 GTCTTTCCTTAGTGATGTCTTGTTCC 59.852 42.308 0.00 0.00 0.00 3.62
4200 4378 6.147985 GGTCTTTCCTTAGTGATGTCTTGTTC 59.852 42.308 0.00 0.00 0.00 3.18
4201 4379 5.998363 GGTCTTTCCTTAGTGATGTCTTGTT 59.002 40.000 0.00 0.00 0.00 2.83
4202 4380 5.308237 AGGTCTTTCCTTAGTGATGTCTTGT 59.692 40.000 0.00 0.00 45.67 3.16
4203 4381 5.799213 AGGTCTTTCCTTAGTGATGTCTTG 58.201 41.667 0.00 0.00 45.67 3.02
4217 4395 0.540454 CCGGTAAGGGAGGTCTTTCC 59.460 60.000 0.00 0.00 35.97 3.13
4228 4406 3.480133 CTCCCCTGCCCGGTAAGG 61.480 72.222 11.88 11.88 40.63 2.69
4229 4407 4.176752 GCTCCCCTGCCCGGTAAG 62.177 72.222 0.00 0.00 0.00 2.34
4247 4425 1.039785 TGAGGCCTCGACCTGATCAG 61.040 60.000 27.43 16.24 41.32 2.90
4248 4426 1.000359 TGAGGCCTCGACCTGATCA 60.000 57.895 27.43 4.76 41.32 2.92
4249 4427 1.439644 GTGAGGCCTCGACCTGATC 59.560 63.158 27.43 1.77 41.32 2.92
4250 4428 2.060980 GGTGAGGCCTCGACCTGAT 61.061 63.158 31.32 1.38 41.32 2.90
4251 4429 2.680352 GGTGAGGCCTCGACCTGA 60.680 66.667 31.32 13.94 41.32 3.86
4252 4430 2.513026 CTTGGTGAGGCCTCGACCTG 62.513 65.000 34.69 27.47 41.32 4.00
4253 4431 2.203788 TTGGTGAGGCCTCGACCT 60.204 61.111 34.69 7.67 45.04 3.85
4254 4432 2.266055 CTTGGTGAGGCCTCGACC 59.734 66.667 31.66 31.66 38.35 4.79
4255 4433 2.266055 CCTTGGTGAGGCCTCGAC 59.734 66.667 27.43 23.55 39.09 4.20
4256 4434 3.003173 CCCTTGGTGAGGCCTCGA 61.003 66.667 27.43 14.07 44.85 4.04
4257 4435 4.785453 GCCCTTGGTGAGGCCTCG 62.785 72.222 27.43 12.71 44.85 4.63
4262 4440 1.303643 GGACTTGCCCTTGGTGAGG 60.304 63.158 0.00 0.00 45.86 3.86
4263 4441 4.404691 GGACTTGCCCTTGGTGAG 57.595 61.111 0.00 0.00 0.00 3.51
4272 4450 1.185618 GGGGAAACTTGGGACTTGCC 61.186 60.000 0.00 0.00 0.00 4.52
4273 4451 1.185618 GGGGGAAACTTGGGACTTGC 61.186 60.000 0.00 0.00 0.00 4.01
4274 4452 0.893727 CGGGGGAAACTTGGGACTTG 60.894 60.000 0.00 0.00 0.00 3.16
4275 4453 1.063654 TCGGGGGAAACTTGGGACTT 61.064 55.000 0.00 0.00 0.00 3.01
4276 4454 1.462627 TCGGGGGAAACTTGGGACT 60.463 57.895 0.00 0.00 0.00 3.85
4277 4455 1.303074 GTCGGGGGAAACTTGGGAC 60.303 63.158 0.00 0.00 0.00 4.46
4278 4456 1.770927 TGTCGGGGGAAACTTGGGA 60.771 57.895 0.00 0.00 0.00 4.37
4279 4457 2.840576 TGTCGGGGGAAACTTGGG 59.159 61.111 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.