Multiple sequence alignment - TraesCS5B01G140300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G140300 chr5B 100.000 3324 0 0 1 3324 264914728 264911405 0.000000e+00 6139.0
1 TraesCS5B01G140300 chr5B 91.260 3009 173 31 332 3324 425666015 425668949 0.000000e+00 4017.0
2 TraesCS5B01G140300 chr5B 76.710 541 97 23 881 1409 439441422 439441945 1.170000e-69 274.0
3 TraesCS5B01G140300 chr5B 97.794 136 3 0 1 136 133420047 133420182 5.540000e-58 235.0
4 TraesCS5B01G140300 chr1B 91.090 3008 179 33 332 3322 656528416 656525481 0.000000e+00 3988.0
5 TraesCS5B01G140300 chr1B 96.429 140 5 0 1 140 7062474 7062613 7.170000e-57 231.0
6 TraesCS5B01G140300 chr3B 90.867 3011 184 34 332 3324 174465514 174462577 0.000000e+00 3952.0
7 TraesCS5B01G140300 chr3B 84.318 440 54 7 2167 2604 763474032 763473606 1.840000e-112 416.0
8 TraesCS5B01G140300 chr3B 87.500 56 7 0 768 823 568344192 568344247 7.700000e-07 65.8
9 TraesCS5B01G140300 chr2B 88.374 1144 107 18 851 1973 779042700 779041562 0.000000e+00 1352.0
10 TraesCS5B01G140300 chr2B 87.061 541 63 7 287 823 727220921 727220384 3.670000e-169 604.0
11 TraesCS5B01G140300 chr2B 95.000 80 3 1 1974 2053 779041593 779041515 1.250000e-24 124.0
12 TraesCS5B01G140300 chr2A 87.221 673 60 14 1319 1973 778158967 778159631 0.000000e+00 743.0
13 TraesCS5B01G140300 chr2A 84.190 525 64 10 824 1332 778158067 778158588 2.980000e-135 492.0
14 TraesCS5B01G140300 chr2A 84.971 346 36 6 1334 1664 11922774 11922430 1.480000e-88 337.0
15 TraesCS5B01G140300 chr2A 97.794 136 3 0 1 136 61495539 61495404 5.540000e-58 235.0
16 TraesCS5B01G140300 chr2A 85.909 220 28 3 1655 1873 11922403 11922186 7.170000e-57 231.0
17 TraesCS5B01G140300 chr6A 87.015 670 63 14 2636 3292 486956937 486957595 0.000000e+00 734.0
18 TraesCS5B01G140300 chr6A 89.957 468 45 2 2134 2601 551640250 551640715 1.320000e-168 603.0
19 TraesCS5B01G140300 chr6A 88.688 221 22 3 1655 1873 551639671 551639890 1.970000e-67 267.0
20 TraesCS5B01G140300 chr6B 84.094 679 60 15 2632 3292 523192912 523193560 2.190000e-171 612.0
21 TraesCS5B01G140300 chr6B 89.957 468 45 2 2134 2601 608997926 608998391 1.320000e-168 603.0
22 TraesCS5B01G140300 chr6B 78.744 828 98 38 900 1664 608996484 608997296 1.790000e-132 483.0
23 TraesCS5B01G140300 chr6B 87.387 222 24 4 1655 1874 608997323 608997542 5.500000e-63 252.0
24 TraesCS5B01G140300 chr6B 97.810 137 3 0 1 137 52028623 52028759 1.540000e-58 237.0
25 TraesCS5B01G140300 chr6B 97.794 136 3 0 1 136 195188300 195188165 5.540000e-58 235.0
26 TraesCS5B01G140300 chr6B 95.172 145 6 1 1 145 57429795 57429938 9.280000e-56 228.0
27 TraesCS5B01G140300 chr6B 91.935 62 5 0 763 824 101410411 101410472 1.640000e-13 87.9
28 TraesCS5B01G140300 chr6D 84.125 674 62 15 2635 3301 354903505 354902870 7.880000e-171 610.0
29 TraesCS5B01G140300 chr6D 88.675 468 51 2 2134 2601 405083050 405083515 1.340000e-158 569.0
30 TraesCS5B01G140300 chr3D 82.143 672 79 20 2635 3300 439419962 439420598 3.770000e-149 538.0
31 TraesCS5B01G140300 chr3D 87.162 296 36 1 2188 2483 459882811 459882518 5.310000e-88 335.0
32 TraesCS5B01G140300 chr3D 80.402 398 54 19 262 651 2766861 2767242 7.020000e-72 281.0
33 TraesCS5B01G140300 chr3A 89.150 341 29 7 2959 3292 6759493 6759832 5.130000e-113 418.0
34 TraesCS5B01G140300 chr3A 89.150 341 29 7 2959 3292 6781093 6781432 5.130000e-113 418.0
35 TraesCS5B01G140300 chr3A 84.524 336 30 7 2635 2970 6704565 6704878 2.490000e-81 313.0
36 TraesCS5B01G140300 chr3A 84.524 336 30 7 2635 2970 6759137 6759450 2.490000e-81 313.0
37 TraesCS5B01G140300 chr3A 84.524 336 30 7 2635 2970 6780736 6781049 2.490000e-81 313.0
38 TraesCS5B01G140300 chr3A 97.794 136 3 0 1 136 684728899 684729034 5.540000e-58 235.0
39 TraesCS5B01G140300 chr1D 87.188 320 39 1 2164 2483 156285595 156285912 2.440000e-96 363.0
40 TraesCS5B01G140300 chr1D 86.875 320 40 1 2164 2483 11359482 11359799 1.130000e-94 357.0
41 TraesCS5B01G140300 chr1D 92.553 94 6 1 714 807 189881660 189881568 2.080000e-27 134.0
42 TraesCS5B01G140300 chr1A 82.725 411 57 3 1259 1664 525007739 525007338 1.470000e-93 353.0
43 TraesCS5B01G140300 chr1A 82.482 411 58 3 1259 1664 523122086 523122487 6.830000e-92 348.0
44 TraesCS5B01G140300 chr1A 82.482 411 57 4 1259 1664 525006723 525006323 2.450000e-91 346.0
45 TraesCS5B01G140300 chr1A 81.266 395 60 3 1275 1664 523125513 523125898 1.160000e-79 307.0
46 TraesCS5B01G140300 chr1A 79.930 284 48 9 979 1260 523120764 523121040 2.020000e-47 200.0
47 TraesCS5B01G140300 chr1A 88.667 150 14 2 2016 2162 523124220 523124369 2.630000e-41 180.0
48 TraesCS5B01G140300 chr1A 87.582 153 16 1 2016 2165 525005975 525005823 1.230000e-39 174.0
49 TraesCS5B01G140300 chr1A 87.417 151 16 2 2015 2162 523125229 523125379 1.590000e-38 171.0
50 TraesCS5B01G140300 chr1A 86.928 153 17 1 2016 2165 525006990 525006838 5.700000e-38 169.0
51 TraesCS5B01G140300 chr1A 85.430 151 19 1 2018 2165 525004992 525004842 1.600000e-33 154.0
52 TraesCS5B01G140300 chr1A 84.967 153 20 1 2016 2165 525003981 525003829 5.740000e-33 152.0
53 TraesCS5B01G140300 chr7A 85.260 346 35 6 1334 1664 42642212 42641868 3.180000e-90 342.0
54 TraesCS5B01G140300 chr7A 83.486 327 46 4 1021 1343 46716823 46717145 6.970000e-77 298.0
55 TraesCS5B01G140300 chr7A 98.529 136 2 0 1 136 356409289 356409154 1.190000e-59 241.0
56 TraesCS5B01G140300 chr7A 87.978 183 19 3 1655 1836 42641841 42641661 2.600000e-51 213.0
57 TraesCS5B01G140300 chr7B 76.895 541 95 24 881 1409 98984441 98984963 2.530000e-71 279.0
58 TraesCS5B01G140300 chr7B 72.917 432 85 30 237 650 116382192 116381775 1.620000e-23 121.0
59 TraesCS5B01G140300 chr4B 98.529 136 2 0 1 136 644578858 644578723 1.190000e-59 241.0
60 TraesCS5B01G140300 chr4B 73.131 428 90 23 237 650 69928418 69928834 2.690000e-26 130.0
61 TraesCS5B01G140300 chr5D 86.854 213 25 3 420 630 530645042 530644831 5.540000e-58 235.0
62 TraesCS5B01G140300 chr5D 86.957 207 24 3 420 624 444849672 444849467 2.580000e-56 230.0
63 TraesCS5B01G140300 chr4A 72.805 467 109 16 197 653 718876990 718876532 3.460000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G140300 chr5B 264911405 264914728 3323 True 6139.000000 6139 100.000000 1 3324 1 chr5B.!!$R1 3323
1 TraesCS5B01G140300 chr5B 425666015 425668949 2934 False 4017.000000 4017 91.260000 332 3324 1 chr5B.!!$F2 2992
2 TraesCS5B01G140300 chr5B 439441422 439441945 523 False 274.000000 274 76.710000 881 1409 1 chr5B.!!$F3 528
3 TraesCS5B01G140300 chr1B 656525481 656528416 2935 True 3988.000000 3988 91.090000 332 3322 1 chr1B.!!$R1 2990
4 TraesCS5B01G140300 chr3B 174462577 174465514 2937 True 3952.000000 3952 90.867000 332 3324 1 chr3B.!!$R1 2992
5 TraesCS5B01G140300 chr2B 779041515 779042700 1185 True 738.000000 1352 91.687000 851 2053 2 chr2B.!!$R2 1202
6 TraesCS5B01G140300 chr2B 727220384 727220921 537 True 604.000000 604 87.061000 287 823 1 chr2B.!!$R1 536
7 TraesCS5B01G140300 chr2A 778158067 778159631 1564 False 617.500000 743 85.705500 824 1973 2 chr2A.!!$F1 1149
8 TraesCS5B01G140300 chr2A 11922186 11922774 588 True 284.000000 337 85.440000 1334 1873 2 chr2A.!!$R2 539
9 TraesCS5B01G140300 chr6A 486956937 486957595 658 False 734.000000 734 87.015000 2636 3292 1 chr6A.!!$F1 656
10 TraesCS5B01G140300 chr6A 551639671 551640715 1044 False 435.000000 603 89.322500 1655 2601 2 chr6A.!!$F2 946
11 TraesCS5B01G140300 chr6B 523192912 523193560 648 False 612.000000 612 84.094000 2632 3292 1 chr6B.!!$F4 660
12 TraesCS5B01G140300 chr6B 608996484 608998391 1907 False 446.000000 603 85.362667 900 2601 3 chr6B.!!$F5 1701
13 TraesCS5B01G140300 chr6D 354902870 354903505 635 True 610.000000 610 84.125000 2635 3301 1 chr6D.!!$R1 666
14 TraesCS5B01G140300 chr3D 439419962 439420598 636 False 538.000000 538 82.143000 2635 3300 1 chr3D.!!$F2 665
15 TraesCS5B01G140300 chr3A 6759137 6759832 695 False 365.500000 418 86.837000 2635 3292 2 chr3A.!!$F3 657
16 TraesCS5B01G140300 chr3A 6780736 6781432 696 False 365.500000 418 86.837000 2635 3292 2 chr3A.!!$F4 657
17 TraesCS5B01G140300 chr1A 523120764 523125898 5134 False 241.200000 348 83.952400 979 2162 5 chr1A.!!$F1 1183
18 TraesCS5B01G140300 chr1A 525003829 525007739 3910 True 224.666667 353 85.019000 1259 2165 6 chr1A.!!$R1 906
19 TraesCS5B01G140300 chr7A 42641661 42642212 551 True 277.500000 342 86.619000 1334 1836 2 chr7A.!!$R2 502
20 TraesCS5B01G140300 chr7B 98984441 98984963 522 False 279.000000 279 76.895000 881 1409 1 chr7B.!!$F1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.028110 GCATTTTCGGCCGTCTGATC 59.972 55.0 27.15 8.20 0.00 2.92 F
250 251 0.104304 GATGACCTACGCCGTTGGAT 59.896 55.0 24.02 8.12 33.00 3.41 F
325 326 0.108615 CTCCGTGGTTTCGAGCAGAT 60.109 55.0 0.00 0.00 0.00 2.90 F
402 403 0.170339 GGCGAGTTAATTGTGCCACC 59.830 55.0 6.09 0.00 45.06 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 6782 0.975556 TTAGCTGTGCTCGGGATGGA 60.976 55.000 0.00 0.00 40.44 3.41 R
1952 7151 2.899256 ACCCAAATACAGCAAGTGCAAT 59.101 40.909 6.00 0.00 45.16 3.56 R
2313 7580 3.130633 GCGATGTGGTATCATGTTGCTA 58.869 45.455 0.00 0.00 0.00 3.49 R
2332 7599 1.398960 CCTTTTGCTTGTCGAAGAGCG 60.399 52.381 14.36 2.99 41.75 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.243128 GCCTAGTTCTGGCCGAAAA 57.757 52.632 10.87 0.00 44.32 2.29
24 25 0.803117 GCCTAGTTCTGGCCGAAAAC 59.197 55.000 10.87 8.72 44.32 2.43
25 26 1.610886 GCCTAGTTCTGGCCGAAAACT 60.611 52.381 17.93 17.93 44.32 2.66
26 27 2.354403 GCCTAGTTCTGGCCGAAAACTA 60.354 50.000 18.17 18.17 44.32 2.24
27 28 3.259902 CCTAGTTCTGGCCGAAAACTAC 58.740 50.000 16.30 4.88 35.08 2.73
28 29 2.180432 AGTTCTGGCCGAAAACTACC 57.820 50.000 13.74 1.71 31.68 3.18
29 30 1.418637 AGTTCTGGCCGAAAACTACCA 59.581 47.619 13.74 0.00 31.68 3.25
30 31 1.534163 GTTCTGGCCGAAAACTACCAC 59.466 52.381 10.87 0.00 32.41 4.16
31 32 1.053424 TCTGGCCGAAAACTACCACT 58.947 50.000 0.00 0.00 0.00 4.00
32 33 1.418637 TCTGGCCGAAAACTACCACTT 59.581 47.619 0.00 0.00 0.00 3.16
33 34 1.804748 CTGGCCGAAAACTACCACTTC 59.195 52.381 0.00 0.00 0.00 3.01
34 35 0.794473 GGCCGAAAACTACCACTTCG 59.206 55.000 0.00 0.00 41.18 3.79
37 38 0.794473 CGAAAACTACCACTTCGGCC 59.206 55.000 0.00 0.00 38.57 6.13
38 39 1.874739 CGAAAACTACCACTTCGGCCA 60.875 52.381 2.24 0.00 38.57 5.36
39 40 1.534163 GAAAACTACCACTTCGGCCAC 59.466 52.381 2.24 0.00 39.03 5.01
40 41 0.250597 AAACTACCACTTCGGCCACC 60.251 55.000 2.24 0.00 39.03 4.61
41 42 1.412453 AACTACCACTTCGGCCACCA 61.412 55.000 2.24 0.00 39.03 4.17
42 43 1.375523 CTACCACTTCGGCCACCAC 60.376 63.158 2.24 0.00 39.03 4.16
43 44 3.229156 TACCACTTCGGCCACCACG 62.229 63.158 2.24 0.00 39.03 4.94
44 45 4.308458 CCACTTCGGCCACCACGA 62.308 66.667 2.24 0.00 38.78 4.35
45 46 2.738521 CACTTCGGCCACCACGAG 60.739 66.667 2.24 0.00 41.81 4.18
46 47 2.915659 ACTTCGGCCACCACGAGA 60.916 61.111 2.24 0.00 41.81 4.04
47 48 2.432628 CTTCGGCCACCACGAGAC 60.433 66.667 2.24 0.00 41.81 3.36
48 49 3.934391 CTTCGGCCACCACGAGACC 62.934 68.421 2.24 0.00 41.81 3.85
51 52 4.736896 GGCCACCACGAGACCGAC 62.737 72.222 0.00 0.00 39.50 4.79
52 53 3.986006 GCCACCACGAGACCGACA 61.986 66.667 0.00 0.00 39.50 4.35
53 54 2.732016 CCACCACGAGACCGACAA 59.268 61.111 0.00 0.00 39.50 3.18
54 55 1.372997 CCACCACGAGACCGACAAG 60.373 63.158 0.00 0.00 39.50 3.16
68 69 3.873910 CCGACAAGGTCATATTTCTGGT 58.126 45.455 0.00 0.00 34.51 4.00
69 70 5.018539 CCGACAAGGTCATATTTCTGGTA 57.981 43.478 0.00 0.00 34.51 3.25
70 71 5.611374 CCGACAAGGTCATATTTCTGGTAT 58.389 41.667 0.00 0.00 34.51 2.73
71 72 6.755206 CCGACAAGGTCATATTTCTGGTATA 58.245 40.000 0.00 0.00 34.51 1.47
72 73 7.386851 CCGACAAGGTCATATTTCTGGTATAT 58.613 38.462 0.00 0.00 34.51 0.86
73 74 7.878127 CCGACAAGGTCATATTTCTGGTATATT 59.122 37.037 0.00 0.00 34.51 1.28
74 75 8.926710 CGACAAGGTCATATTTCTGGTATATTC 58.073 37.037 0.00 0.00 32.09 1.75
75 76 9.778741 GACAAGGTCATATTTCTGGTATATTCA 57.221 33.333 0.00 0.00 32.09 2.57
76 77 9.561069 ACAAGGTCATATTTCTGGTATATTCAC 57.439 33.333 0.00 0.00 0.00 3.18
77 78 9.559732 CAAGGTCATATTTCTGGTATATTCACA 57.440 33.333 0.00 0.00 0.00 3.58
82 83 9.519191 TCATATTTCTGGTATATTCACAATGGG 57.481 33.333 0.00 0.00 0.00 4.00
83 84 9.300681 CATATTTCTGGTATATTCACAATGGGT 57.699 33.333 0.00 0.00 0.00 4.51
85 86 8.691661 ATTTCTGGTATATTCACAATGGGTAC 57.308 34.615 0.00 0.00 0.00 3.34
86 87 7.446106 TTCTGGTATATTCACAATGGGTACT 57.554 36.000 0.00 0.00 0.00 2.73
87 88 8.555896 TTCTGGTATATTCACAATGGGTACTA 57.444 34.615 0.00 0.00 0.00 1.82
88 89 8.736097 TCTGGTATATTCACAATGGGTACTAT 57.264 34.615 0.00 0.00 0.00 2.12
89 90 9.831682 TCTGGTATATTCACAATGGGTACTATA 57.168 33.333 0.00 0.00 0.00 1.31
91 92 9.610104 TGGTATATTCACAATGGGTACTATAGT 57.390 33.333 10.87 10.87 0.00 2.12
103 104 5.718146 GGGTACTATAGTTCCCGAATTAGC 58.282 45.833 26.47 8.99 44.05 3.09
104 105 5.479724 GGGTACTATAGTTCCCGAATTAGCT 59.520 44.000 26.47 0.00 44.05 3.32
105 106 6.660949 GGGTACTATAGTTCCCGAATTAGCTA 59.339 42.308 26.47 0.00 44.05 3.32
106 107 7.341512 GGGTACTATAGTTCCCGAATTAGCTAT 59.658 40.741 26.47 0.00 44.05 2.97
107 108 9.401058 GGTACTATAGTTCCCGAATTAGCTATA 57.599 37.037 15.82 0.00 30.30 1.31
149 150 2.222227 AAAATCAAGACAGGAGCCCC 57.778 50.000 0.00 0.00 0.00 5.80
150 151 0.332972 AAATCAAGACAGGAGCCCCC 59.667 55.000 0.00 0.00 0.00 5.40
151 152 1.915078 AATCAAGACAGGAGCCCCCG 61.915 60.000 0.00 0.00 40.87 5.73
152 153 2.822643 ATCAAGACAGGAGCCCCCGA 62.823 60.000 0.00 0.00 40.87 5.14
153 154 2.685380 AAGACAGGAGCCCCCGAG 60.685 66.667 0.00 0.00 40.87 4.63
154 155 4.787280 AGACAGGAGCCCCCGAGG 62.787 72.222 0.00 0.00 40.87 4.63
157 158 4.787280 CAGGAGCCCCCGAGGTCT 62.787 72.222 0.00 0.00 40.87 3.85
158 159 4.467107 AGGAGCCCCCGAGGTCTC 62.467 72.222 0.00 0.00 40.87 3.36
159 160 4.467107 GGAGCCCCCGAGGTCTCT 62.467 72.222 0.00 0.00 38.28 3.10
160 161 2.835895 GAGCCCCCGAGGTCTCTC 60.836 72.222 0.00 0.00 36.44 3.20
161 162 3.663815 GAGCCCCCGAGGTCTCTCA 62.664 68.421 0.00 0.00 39.95 3.27
162 163 3.151022 GCCCCCGAGGTCTCTCAG 61.151 72.222 0.00 0.00 39.95 3.35
163 164 2.684104 CCCCCGAGGTCTCTCAGA 59.316 66.667 0.00 0.00 39.95 3.27
164 165 1.000486 CCCCCGAGGTCTCTCAGAA 60.000 63.158 0.00 0.00 39.95 3.02
165 166 0.397816 CCCCCGAGGTCTCTCAGAAT 60.398 60.000 0.00 0.00 39.95 2.40
166 167 1.490574 CCCCGAGGTCTCTCAGAATT 58.509 55.000 0.00 0.00 39.95 2.17
167 168 1.834263 CCCCGAGGTCTCTCAGAATTT 59.166 52.381 0.00 0.00 39.95 1.82
168 169 3.031736 CCCCGAGGTCTCTCAGAATTTA 58.968 50.000 0.00 0.00 39.95 1.40
169 170 3.068873 CCCCGAGGTCTCTCAGAATTTAG 59.931 52.174 0.00 0.00 39.95 1.85
170 171 3.491792 CCCGAGGTCTCTCAGAATTTAGC 60.492 52.174 0.00 0.00 39.95 3.09
171 172 3.131223 CCGAGGTCTCTCAGAATTTAGCA 59.869 47.826 0.00 0.00 39.95 3.49
172 173 4.382040 CCGAGGTCTCTCAGAATTTAGCAA 60.382 45.833 0.00 0.00 39.95 3.91
173 174 4.564769 CGAGGTCTCTCAGAATTTAGCAAC 59.435 45.833 0.00 0.00 39.95 4.17
174 175 5.623368 CGAGGTCTCTCAGAATTTAGCAACT 60.623 44.000 0.00 0.00 39.95 3.16
175 176 5.729510 AGGTCTCTCAGAATTTAGCAACTC 58.270 41.667 0.00 0.00 0.00 3.01
176 177 5.483583 AGGTCTCTCAGAATTTAGCAACTCT 59.516 40.000 0.00 0.00 0.00 3.24
177 178 5.810074 GGTCTCTCAGAATTTAGCAACTCTC 59.190 44.000 0.00 0.00 0.00 3.20
178 179 5.514914 GTCTCTCAGAATTTAGCAACTCTCG 59.485 44.000 0.00 0.00 0.00 4.04
179 180 5.416013 TCTCTCAGAATTTAGCAACTCTCGA 59.584 40.000 0.00 0.00 0.00 4.04
180 181 5.403246 TCTCAGAATTTAGCAACTCTCGAC 58.597 41.667 0.00 0.00 0.00 4.20
181 182 4.495422 TCAGAATTTAGCAACTCTCGACC 58.505 43.478 0.00 0.00 0.00 4.79
182 183 4.021456 TCAGAATTTAGCAACTCTCGACCA 60.021 41.667 0.00 0.00 0.00 4.02
183 184 4.872691 CAGAATTTAGCAACTCTCGACCAT 59.127 41.667 0.00 0.00 0.00 3.55
184 185 5.006165 CAGAATTTAGCAACTCTCGACCATC 59.994 44.000 0.00 0.00 0.00 3.51
185 186 2.561733 TTAGCAACTCTCGACCATCG 57.438 50.000 0.00 0.00 42.10 3.84
186 187 0.738975 TAGCAACTCTCGACCATCGG 59.261 55.000 0.00 0.00 40.88 4.18
187 188 0.965866 AGCAACTCTCGACCATCGGA 60.966 55.000 0.00 0.00 40.88 4.55
188 189 0.802607 GCAACTCTCGACCATCGGAC 60.803 60.000 0.00 0.00 40.88 4.79
189 190 0.811915 CAACTCTCGACCATCGGACT 59.188 55.000 0.00 0.00 40.88 3.85
190 191 0.811915 AACTCTCGACCATCGGACTG 59.188 55.000 0.00 0.00 40.88 3.51
191 192 0.035343 ACTCTCGACCATCGGACTGA 60.035 55.000 0.00 0.00 40.88 3.41
192 193 1.313772 CTCTCGACCATCGGACTGAT 58.686 55.000 0.00 0.00 40.88 2.90
193 194 1.265635 CTCTCGACCATCGGACTGATC 59.734 57.143 0.00 0.00 40.88 2.92
194 195 0.312416 CTCGACCATCGGACTGATCC 59.688 60.000 0.00 0.00 40.88 3.36
195 196 1.107538 TCGACCATCGGACTGATCCC 61.108 60.000 0.00 0.00 42.83 3.85
196 197 1.749033 GACCATCGGACTGATCCCC 59.251 63.158 0.00 0.00 42.83 4.81
197 198 0.760945 GACCATCGGACTGATCCCCT 60.761 60.000 0.00 0.00 42.83 4.79
198 199 0.326618 ACCATCGGACTGATCCCCTT 60.327 55.000 0.00 0.00 42.83 3.95
199 200 0.107456 CCATCGGACTGATCCCCTTG 59.893 60.000 0.00 0.00 42.83 3.61
200 201 1.123077 CATCGGACTGATCCCCTTGA 58.877 55.000 0.00 0.00 42.83 3.02
201 202 1.696336 CATCGGACTGATCCCCTTGAT 59.304 52.381 0.00 0.00 42.83 2.57
202 203 1.123077 TCGGACTGATCCCCTTGATG 58.877 55.000 0.00 0.00 42.83 3.07
203 204 0.533755 CGGACTGATCCCCTTGATGC 60.534 60.000 0.00 0.00 42.83 3.91
204 205 0.548031 GGACTGATCCCCTTGATGCA 59.452 55.000 0.00 0.00 39.39 3.96
205 206 1.144503 GGACTGATCCCCTTGATGCAT 59.855 52.381 0.00 0.00 39.39 3.96
206 207 2.423947 GGACTGATCCCCTTGATGCATT 60.424 50.000 0.00 0.00 39.39 3.56
207 208 3.294214 GACTGATCCCCTTGATGCATTT 58.706 45.455 0.00 0.00 32.41 2.32
208 209 3.703052 GACTGATCCCCTTGATGCATTTT 59.297 43.478 0.00 0.00 32.41 1.82
209 210 3.703052 ACTGATCCCCTTGATGCATTTTC 59.297 43.478 0.00 0.00 32.41 2.29
210 211 2.689471 TGATCCCCTTGATGCATTTTCG 59.311 45.455 0.00 0.00 32.41 3.46
211 212 1.473258 TCCCCTTGATGCATTTTCGG 58.527 50.000 0.00 0.00 0.00 4.30
212 213 0.179103 CCCCTTGATGCATTTTCGGC 60.179 55.000 0.00 0.00 0.00 5.54
213 214 0.179103 CCCTTGATGCATTTTCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
214 215 0.526096 CCTTGATGCATTTTCGGCCG 60.526 55.000 22.12 22.12 0.00 6.13
215 216 0.171007 CTTGATGCATTTTCGGCCGT 59.829 50.000 27.15 1.49 0.00 5.68
216 217 0.170116 TTGATGCATTTTCGGCCGTC 59.830 50.000 27.15 13.26 0.00 4.79
217 218 0.676466 TGATGCATTTTCGGCCGTCT 60.676 50.000 27.15 5.31 0.00 4.18
218 219 0.248215 GATGCATTTTCGGCCGTCTG 60.248 55.000 27.15 18.20 0.00 3.51
219 220 0.676466 ATGCATTTTCGGCCGTCTGA 60.676 50.000 27.15 10.38 0.00 3.27
220 221 0.676466 TGCATTTTCGGCCGTCTGAT 60.676 50.000 27.15 12.31 0.00 2.90
221 222 0.028110 GCATTTTCGGCCGTCTGATC 59.972 55.000 27.15 8.20 0.00 2.92
222 223 1.368641 CATTTTCGGCCGTCTGATCA 58.631 50.000 27.15 0.00 0.00 2.92
223 224 1.737236 CATTTTCGGCCGTCTGATCAA 59.263 47.619 27.15 7.12 0.00 2.57
224 225 1.438651 TTTTCGGCCGTCTGATCAAG 58.561 50.000 27.15 0.00 0.00 3.02
225 226 1.019278 TTTCGGCCGTCTGATCAAGC 61.019 55.000 27.15 0.00 0.00 4.01
226 227 1.888436 TTCGGCCGTCTGATCAAGCT 61.888 55.000 27.15 0.00 0.00 3.74
227 228 1.448540 CGGCCGTCTGATCAAGCTT 60.449 57.895 19.50 0.00 0.00 3.74
228 229 1.424493 CGGCCGTCTGATCAAGCTTC 61.424 60.000 19.50 0.00 0.00 3.86
229 230 0.107945 GGCCGTCTGATCAAGCTTCT 60.108 55.000 0.00 0.00 0.00 2.85
230 231 1.137086 GGCCGTCTGATCAAGCTTCTA 59.863 52.381 0.00 0.00 0.00 2.10
231 232 2.468831 GCCGTCTGATCAAGCTTCTAG 58.531 52.381 0.00 0.00 0.00 2.43
232 233 2.099921 GCCGTCTGATCAAGCTTCTAGA 59.900 50.000 0.00 0.00 0.00 2.43
233 234 3.243704 GCCGTCTGATCAAGCTTCTAGAT 60.244 47.826 0.00 0.00 0.00 1.98
234 235 4.297510 CCGTCTGATCAAGCTTCTAGATG 58.702 47.826 0.00 3.75 0.00 2.90
235 236 4.037327 CCGTCTGATCAAGCTTCTAGATGA 59.963 45.833 9.72 3.11 0.00 2.92
236 237 4.975502 CGTCTGATCAAGCTTCTAGATGAC 59.024 45.833 9.72 1.34 0.00 3.06
237 238 5.288804 GTCTGATCAAGCTTCTAGATGACC 58.711 45.833 9.72 0.00 0.00 4.02
238 239 5.068987 GTCTGATCAAGCTTCTAGATGACCT 59.931 44.000 9.72 0.00 0.00 3.85
239 240 6.264292 GTCTGATCAAGCTTCTAGATGACCTA 59.736 42.308 9.72 0.00 0.00 3.08
240 241 6.264292 TCTGATCAAGCTTCTAGATGACCTAC 59.736 42.308 9.72 0.00 0.00 3.18
241 242 4.902443 TCAAGCTTCTAGATGACCTACG 57.098 45.455 9.72 0.00 0.00 3.51
242 243 3.066900 TCAAGCTTCTAGATGACCTACGC 59.933 47.826 9.72 0.00 0.00 4.42
243 244 1.957877 AGCTTCTAGATGACCTACGCC 59.042 52.381 9.72 0.00 0.00 5.68
244 245 1.335142 GCTTCTAGATGACCTACGCCG 60.335 57.143 9.72 0.00 0.00 6.46
245 246 1.948145 CTTCTAGATGACCTACGCCGT 59.052 52.381 0.00 0.00 0.00 5.68
246 247 2.048444 TCTAGATGACCTACGCCGTT 57.952 50.000 0.00 0.00 0.00 4.44
247 248 1.674441 TCTAGATGACCTACGCCGTTG 59.326 52.381 0.00 0.00 0.00 4.10
248 249 0.742505 TAGATGACCTACGCCGTTGG 59.257 55.000 16.10 16.10 34.76 3.77
249 250 0.968901 AGATGACCTACGCCGTTGGA 60.969 55.000 24.02 3.04 33.00 3.53
250 251 0.104304 GATGACCTACGCCGTTGGAT 59.896 55.000 24.02 8.12 33.00 3.41
251 252 0.104304 ATGACCTACGCCGTTGGATC 59.896 55.000 24.02 16.48 33.00 3.36
252 253 1.588139 GACCTACGCCGTTGGATCG 60.588 63.158 24.02 0.00 33.00 3.69
253 254 1.996786 GACCTACGCCGTTGGATCGA 61.997 60.000 24.02 0.00 33.00 3.59
254 255 1.299165 CCTACGCCGTTGGATCGAG 60.299 63.158 12.49 0.00 30.33 4.04
255 256 1.299165 CTACGCCGTTGGATCGAGG 60.299 63.158 0.00 0.00 0.00 4.63
256 257 3.420214 TACGCCGTTGGATCGAGGC 62.420 63.158 0.00 1.15 45.67 4.70
258 259 4.162690 GCCGTTGGATCGAGGCCT 62.163 66.667 3.86 3.86 43.54 5.19
259 260 2.107141 CCGTTGGATCGAGGCCTC 59.893 66.667 23.79 23.79 0.00 4.70
268 269 2.829003 CGAGGCCTCGCTCCTGTA 60.829 66.667 39.83 0.00 46.50 2.74
269 270 2.840066 CGAGGCCTCGCTCCTGTAG 61.840 68.421 39.83 13.09 46.50 2.74
285 286 5.597806 TCCTGTAGCAATGAATAGTAACCG 58.402 41.667 0.00 0.00 0.00 4.44
286 287 5.128171 TCCTGTAGCAATGAATAGTAACCGT 59.872 40.000 0.00 0.00 0.00 4.83
287 288 5.815740 CCTGTAGCAATGAATAGTAACCGTT 59.184 40.000 0.00 0.00 0.00 4.44
288 289 6.315393 CCTGTAGCAATGAATAGTAACCGTTT 59.685 38.462 0.00 0.00 0.00 3.60
289 290 7.298507 TGTAGCAATGAATAGTAACCGTTTC 57.701 36.000 0.00 0.00 0.00 2.78
290 291 5.813080 AGCAATGAATAGTAACCGTTTCC 57.187 39.130 0.00 0.00 0.00 3.13
291 292 4.638865 AGCAATGAATAGTAACCGTTTCCC 59.361 41.667 0.00 0.00 0.00 3.97
292 293 4.638865 GCAATGAATAGTAACCGTTTCCCT 59.361 41.667 0.00 0.00 0.00 4.20
293 294 5.448632 GCAATGAATAGTAACCGTTTCCCTG 60.449 44.000 0.00 0.00 0.00 4.45
294 295 3.602483 TGAATAGTAACCGTTTCCCTGC 58.398 45.455 0.00 0.00 0.00 4.85
295 296 3.008157 TGAATAGTAACCGTTTCCCTGCA 59.992 43.478 0.00 0.00 0.00 4.41
301 302 2.524569 ACCGTTTCCCTGCATTTTTG 57.475 45.000 0.00 0.00 0.00 2.44
310 311 2.415893 CCCTGCATTTTTGCTTACTCCG 60.416 50.000 0.00 0.00 35.49 4.63
311 312 2.228822 CCTGCATTTTTGCTTACTCCGT 59.771 45.455 0.00 0.00 35.49 4.69
312 313 3.236816 CTGCATTTTTGCTTACTCCGTG 58.763 45.455 0.00 0.00 35.49 4.94
313 314 2.030363 TGCATTTTTGCTTACTCCGTGG 60.030 45.455 0.00 0.00 35.49 4.94
316 317 4.616953 CATTTTTGCTTACTCCGTGGTTT 58.383 39.130 0.00 0.00 0.00 3.27
318 319 1.504359 TTGCTTACTCCGTGGTTTCG 58.496 50.000 0.00 0.00 0.00 3.46
321 322 1.347320 CTTACTCCGTGGTTTCGAGC 58.653 55.000 0.00 0.00 0.00 5.03
322 323 0.675083 TTACTCCGTGGTTTCGAGCA 59.325 50.000 0.00 0.00 0.00 4.26
323 324 0.242825 TACTCCGTGGTTTCGAGCAG 59.757 55.000 0.00 0.00 0.00 4.24
324 325 1.289066 CTCCGTGGTTTCGAGCAGA 59.711 57.895 0.00 0.00 0.00 4.26
325 326 0.108615 CTCCGTGGTTTCGAGCAGAT 60.109 55.000 0.00 0.00 0.00 2.90
328 329 1.673033 CCGTGGTTTCGAGCAGATCTT 60.673 52.381 0.00 0.00 0.00 2.40
372 373 4.643387 GGGACACGCCTGCCAGTT 62.643 66.667 0.00 0.00 36.66 3.16
373 374 2.594592 GGACACGCCTGCCAGTTT 60.595 61.111 0.00 0.00 0.00 2.66
385 386 2.730094 CAGTTTGTGTGGCTGGGC 59.270 61.111 0.00 0.00 0.00 5.36
390 391 2.902423 TTTGTGTGGCTGGGCGAGTT 62.902 55.000 0.00 0.00 0.00 3.01
391 392 2.046009 TTGTGTGGCTGGGCGAGTTA 62.046 55.000 0.00 0.00 0.00 2.24
393 394 0.676782 GTGTGGCTGGGCGAGTTAAT 60.677 55.000 0.00 0.00 0.00 1.40
399 400 0.451783 CTGGGCGAGTTAATTGTGCC 59.548 55.000 3.04 3.04 44.98 5.01
402 403 0.170339 GGCGAGTTAATTGTGCCACC 59.830 55.000 6.09 0.00 45.06 4.61
406 407 2.702261 GAGTTAATTGTGCCACCCGTA 58.298 47.619 0.00 0.00 0.00 4.02
431 432 1.978580 CCCTCCGGTGGCTAAATATCT 59.021 52.381 17.44 0.00 0.00 1.98
451 452 1.227556 GTGCCACCGCCGAGAATAT 60.228 57.895 0.00 0.00 0.00 1.28
511 512 1.008881 TCTGTGCGTGTCGTCTGAC 60.009 57.895 0.00 0.00 45.71 3.51
532 533 1.097547 GTTGGCTCGTGGATGGATGG 61.098 60.000 0.00 0.00 0.00 3.51
541 543 0.846015 TGGATGGATGGGGTAAGCAG 59.154 55.000 0.00 0.00 0.00 4.24
588 590 3.751246 CACTCCCCGTCGCCGTTA 61.751 66.667 0.00 0.00 0.00 3.18
626 628 4.527583 CCGCTGCTGCTCTCCTCC 62.528 72.222 14.03 0.00 36.97 4.30
634 636 2.762043 GCTCTCCTCCCCGAGCTT 60.762 66.667 4.17 0.00 46.87 3.74
687 689 2.190578 CCGCCACCATTCCTCCTC 59.809 66.667 0.00 0.00 0.00 3.71
724 727 1.054406 TCCCCAGGCCTAGAAATCGG 61.054 60.000 3.98 0.00 0.00 4.18
725 728 1.345715 CCCCAGGCCTAGAAATCGGT 61.346 60.000 3.98 0.00 0.00 4.69
828 831 4.944372 CGCGGTGGCTCGTATCCC 62.944 72.222 0.00 0.00 36.88 3.85
936 953 1.455383 GACCACCCTGTGCAGTTTGG 61.455 60.000 12.24 12.24 35.59 3.28
1012 1030 4.415150 CCCAGATGCTGTGGCCGT 62.415 66.667 0.00 0.00 37.74 5.68
1053 1071 0.903187 CCGTCGTTAGAAAGTACGCG 59.097 55.000 3.53 3.53 37.66 6.01
1083 1103 1.442886 TTTGGAAGGTGAGCCCCCAT 61.443 55.000 0.00 0.00 37.68 4.00
1137 1166 3.492656 GCGTGGTACTGATATGTGATGGT 60.493 47.826 0.00 0.00 0.00 3.55
1316 2420 2.245287 AGGTTCCTCTTCGTCTATCCCT 59.755 50.000 0.00 0.00 0.00 4.20
1378 6357 5.656859 ACCCTGCTAAAATCCCATAAAGTTC 59.343 40.000 0.00 0.00 0.00 3.01
1452 6431 2.749441 GGCTCTTGGCAGTGGCTC 60.749 66.667 18.53 2.07 44.01 4.70
1468 6447 0.235926 GCTCGCTTTTGTCTCGCTTT 59.764 50.000 0.00 0.00 0.00 3.51
1491 6470 3.697190 AGATGGAGGAGACCTATGTGT 57.303 47.619 0.00 0.00 31.76 3.72
1572 6556 5.490213 CGCGTATTGAAAGGTTATGTCTTC 58.510 41.667 0.00 0.00 0.00 2.87
1746 6773 3.974835 ATGCTCGCATTCACCCGCA 62.975 57.895 0.00 0.00 31.82 5.69
1916 7105 6.790232 AAAGTTTGAGAATTTGGGAGTTGA 57.210 33.333 0.00 0.00 0.00 3.18
1952 7151 2.550855 CCTTCAGAGTTTGCTGCACCTA 60.551 50.000 0.00 0.00 35.86 3.08
2120 7347 0.626916 TGCCCACCATTACCTAACCC 59.373 55.000 0.00 0.00 0.00 4.11
2162 7429 1.134670 AGGAGCGAGTGTTAAGATGCC 60.135 52.381 0.00 0.00 0.00 4.40
2186 7453 7.577426 GCCACAAATTGATTCAGGACAAGATAA 60.577 37.037 0.00 0.00 0.00 1.75
2268 7535 0.253044 ATAGGCGTGTTGGATGCTGT 59.747 50.000 0.00 0.00 36.73 4.40
2313 7580 6.155910 AGTGATGATACTGTTGTTGGATCTCT 59.844 38.462 0.00 0.00 0.00 3.10
2331 7598 5.876651 TCTCTAGCAACATGATACCACAT 57.123 39.130 0.00 0.00 0.00 3.21
2332 7599 5.847304 TCTCTAGCAACATGATACCACATC 58.153 41.667 0.00 0.00 0.00 3.06
2333 7600 4.620982 TCTAGCAACATGATACCACATCG 58.379 43.478 0.00 0.00 0.00 3.84
2363 7630 5.335113 CGACAAGCAAAAGGATGAGAATTGA 60.335 40.000 0.00 0.00 0.00 2.57
2384 7651 2.497273 ACAGATGACCGATCACATGTCA 59.503 45.455 0.00 6.78 42.65 3.58
2423 7690 2.109126 GCTCACCATCTTGGCCGTC 61.109 63.158 0.00 0.00 42.67 4.79
2537 7804 5.675684 AGACTTGACCCACAAAAACAAAT 57.324 34.783 0.00 0.00 38.08 2.32
2584 7851 4.640771 ATCGACATATGTAAGGGGCATT 57.359 40.909 8.71 0.00 0.00 3.56
2629 7896 7.330946 CCTTACAAGTAGAAACACGATGAATGA 59.669 37.037 0.00 0.00 0.00 2.57
2722 7991 9.899226 ACTGCTAGAAATTTTCAATGTTTAGAC 57.101 29.630 11.53 1.94 0.00 2.59
2745 8023 3.758023 TGTGTGATGTTCCATGTTCATCC 59.242 43.478 14.78 9.52 37.67 3.51
2901 8180 9.950496 AAGATGATTTAGTGATGAAACTACAGT 57.050 29.630 0.00 0.00 32.39 3.55
2996 8365 1.355971 TCGCCGTTATTTCTGCTGAC 58.644 50.000 0.00 0.00 0.00 3.51
3021 8390 9.337396 ACGATTATTTGAAATTATCAGGCAGTA 57.663 29.630 14.78 0.00 39.77 2.74
3082 8451 7.795047 TGAAGATGCTATCAGGAATAACTTGA 58.205 34.615 0.00 0.00 38.88 3.02
3086 8455 7.877097 AGATGCTATCAGGAATAACTTGATGTC 59.123 37.037 0.00 0.00 43.48 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.474410 AGTTTTCGGCCAGAACTAGG 57.526 50.000 12.27 0.00 38.83 3.02
7 8 3.259902 GGTAGTTTTCGGCCAGAACTAG 58.740 50.000 17.95 0.00 38.83 2.57
8 9 2.633967 TGGTAGTTTTCGGCCAGAACTA 59.366 45.455 15.02 15.02 38.83 2.24
9 10 1.418637 TGGTAGTTTTCGGCCAGAACT 59.581 47.619 16.64 16.64 38.83 3.01
11 12 1.418637 AGTGGTAGTTTTCGGCCAGAA 59.581 47.619 2.24 4.57 37.01 3.02
12 13 1.053424 AGTGGTAGTTTTCGGCCAGA 58.947 50.000 2.24 0.00 31.67 3.86
13 14 1.804748 GAAGTGGTAGTTTTCGGCCAG 59.195 52.381 2.24 0.00 31.67 4.85
14 15 1.874739 CGAAGTGGTAGTTTTCGGCCA 60.875 52.381 2.24 0.00 39.82 5.36
15 16 0.794473 CGAAGTGGTAGTTTTCGGCC 59.206 55.000 0.00 0.00 39.82 6.13
18 19 0.794473 GGCCGAAGTGGTAGTTTTCG 59.206 55.000 0.00 0.00 42.31 3.46
19 20 1.534163 GTGGCCGAAGTGGTAGTTTTC 59.466 52.381 0.00 0.00 41.21 2.29
20 21 1.601166 GTGGCCGAAGTGGTAGTTTT 58.399 50.000 0.00 0.00 41.21 2.43
21 22 0.250597 GGTGGCCGAAGTGGTAGTTT 60.251 55.000 0.00 0.00 41.21 2.66
22 23 1.373812 GGTGGCCGAAGTGGTAGTT 59.626 57.895 0.00 0.00 41.21 2.24
23 24 1.839747 TGGTGGCCGAAGTGGTAGT 60.840 57.895 0.00 0.00 41.21 2.73
24 25 1.375523 GTGGTGGCCGAAGTGGTAG 60.376 63.158 0.00 0.00 41.21 3.18
25 26 2.745037 GTGGTGGCCGAAGTGGTA 59.255 61.111 0.00 0.00 41.21 3.25
26 27 4.619227 CGTGGTGGCCGAAGTGGT 62.619 66.667 0.00 0.00 41.21 4.16
27 28 4.308458 TCGTGGTGGCCGAAGTGG 62.308 66.667 0.00 0.00 42.50 4.00
28 29 2.738521 CTCGTGGTGGCCGAAGTG 60.739 66.667 0.00 0.00 33.34 3.16
29 30 2.915659 TCTCGTGGTGGCCGAAGT 60.916 61.111 0.00 0.00 33.34 3.01
30 31 2.432628 GTCTCGTGGTGGCCGAAG 60.433 66.667 0.00 0.00 33.34 3.79
31 32 3.998672 GGTCTCGTGGTGGCCGAA 61.999 66.667 0.00 0.00 33.34 4.30
34 35 4.736896 GTCGGTCTCGTGGTGGCC 62.737 72.222 0.00 0.00 37.69 5.36
35 36 3.509137 TTGTCGGTCTCGTGGTGGC 62.509 63.158 0.00 0.00 37.69 5.01
36 37 1.372997 CTTGTCGGTCTCGTGGTGG 60.373 63.158 0.00 0.00 37.69 4.61
37 38 1.372997 CCTTGTCGGTCTCGTGGTG 60.373 63.158 0.00 0.00 37.69 4.17
38 39 1.831286 ACCTTGTCGGTCTCGTGGT 60.831 57.895 0.00 0.00 44.93 4.16
39 40 3.048602 ACCTTGTCGGTCTCGTGG 58.951 61.111 0.00 0.00 44.93 4.94
47 48 3.873910 ACCAGAAATATGACCTTGTCGG 58.126 45.455 0.00 0.00 34.95 4.79
48 49 8.833231 AATATACCAGAAATATGACCTTGTCG 57.167 34.615 0.00 0.00 34.95 4.35
49 50 9.778741 TGAATATACCAGAAATATGACCTTGTC 57.221 33.333 0.00 0.00 0.00 3.18
50 51 9.561069 GTGAATATACCAGAAATATGACCTTGT 57.439 33.333 0.00 0.00 0.00 3.16
51 52 9.559732 TGTGAATATACCAGAAATATGACCTTG 57.440 33.333 0.00 0.00 0.00 3.61
56 57 9.519191 CCCATTGTGAATATACCAGAAATATGA 57.481 33.333 0.00 0.00 0.00 2.15
57 58 9.300681 ACCCATTGTGAATATACCAGAAATATG 57.699 33.333 0.00 0.00 0.00 1.78
59 60 9.787435 GTACCCATTGTGAATATACCAGAAATA 57.213 33.333 0.00 0.00 0.00 1.40
60 61 8.502738 AGTACCCATTGTGAATATACCAGAAAT 58.497 33.333 0.00 0.00 0.00 2.17
61 62 7.867921 AGTACCCATTGTGAATATACCAGAAA 58.132 34.615 0.00 0.00 0.00 2.52
62 63 7.446106 AGTACCCATTGTGAATATACCAGAA 57.554 36.000 0.00 0.00 0.00 3.02
63 64 8.736097 ATAGTACCCATTGTGAATATACCAGA 57.264 34.615 0.00 0.00 0.00 3.86
65 66 9.610104 ACTATAGTACCCATTGTGAATATACCA 57.390 33.333 2.75 0.00 0.00 3.25
69 70 8.603304 GGGAACTATAGTACCCATTGTGAATAT 58.397 37.037 19.83 0.00 41.72 1.28
70 71 7.256048 CGGGAACTATAGTACCCATTGTGAATA 60.256 40.741 19.83 0.00 42.16 1.75
71 72 6.463897 CGGGAACTATAGTACCCATTGTGAAT 60.464 42.308 19.83 0.00 42.16 2.57
72 73 5.163385 CGGGAACTATAGTACCCATTGTGAA 60.163 44.000 19.83 0.00 42.16 3.18
73 74 4.342951 CGGGAACTATAGTACCCATTGTGA 59.657 45.833 19.83 0.00 42.16 3.58
74 75 4.342951 TCGGGAACTATAGTACCCATTGTG 59.657 45.833 19.83 7.92 42.16 3.33
75 76 4.549668 TCGGGAACTATAGTACCCATTGT 58.450 43.478 19.83 0.00 42.16 2.71
76 77 5.540400 TTCGGGAACTATAGTACCCATTG 57.460 43.478 19.83 12.11 42.16 2.82
77 78 6.758806 AATTCGGGAACTATAGTACCCATT 57.241 37.500 19.83 14.69 42.16 3.16
78 79 6.070938 GCTAATTCGGGAACTATAGTACCCAT 60.071 42.308 19.83 11.01 42.16 4.00
79 80 5.244626 GCTAATTCGGGAACTATAGTACCCA 59.755 44.000 19.83 7.78 42.16 4.51
80 81 5.479724 AGCTAATTCGGGAACTATAGTACCC 59.520 44.000 16.71 15.00 39.02 3.69
81 82 6.587206 AGCTAATTCGGGAACTATAGTACC 57.413 41.667 5.65 10.76 0.00 3.34
129 130 2.529632 GGGGCTCCTGTCTTGATTTTT 58.470 47.619 0.00 0.00 0.00 1.94
130 131 1.272704 GGGGGCTCCTGTCTTGATTTT 60.273 52.381 0.52 0.00 0.00 1.82
131 132 0.332972 GGGGGCTCCTGTCTTGATTT 59.667 55.000 0.52 0.00 0.00 2.17
132 133 1.915078 CGGGGGCTCCTGTCTTGATT 61.915 60.000 2.03 0.00 34.69 2.57
133 134 2.370445 CGGGGGCTCCTGTCTTGAT 61.370 63.158 2.03 0.00 34.69 2.57
134 135 3.003173 CGGGGGCTCCTGTCTTGA 61.003 66.667 2.03 0.00 34.69 3.02
135 136 3.003173 TCGGGGGCTCCTGTCTTG 61.003 66.667 12.38 0.00 40.36 3.02
136 137 2.685380 CTCGGGGGCTCCTGTCTT 60.685 66.667 12.38 0.00 40.36 3.01
137 138 4.787280 CCTCGGGGGCTCCTGTCT 62.787 72.222 12.38 0.00 40.36 3.41
145 146 3.151022 CTGAGAGACCTCGGGGGC 61.151 72.222 6.13 0.16 42.33 5.80
146 147 0.397816 ATTCTGAGAGACCTCGGGGG 60.398 60.000 6.13 0.00 44.20 5.40
147 148 1.490574 AATTCTGAGAGACCTCGGGG 58.509 55.000 0.00 0.00 44.20 5.73
148 149 3.491792 GCTAAATTCTGAGAGACCTCGGG 60.492 52.174 0.00 0.00 44.20 5.14
149 150 3.131223 TGCTAAATTCTGAGAGACCTCGG 59.869 47.826 0.00 0.00 45.18 4.63
150 151 4.377839 TGCTAAATTCTGAGAGACCTCG 57.622 45.455 0.00 0.00 42.33 4.63
151 152 5.729510 AGTTGCTAAATTCTGAGAGACCTC 58.270 41.667 0.00 0.00 39.86 3.85
152 153 5.483583 AGAGTTGCTAAATTCTGAGAGACCT 59.516 40.000 0.00 0.00 31.64 3.85
153 154 5.729510 AGAGTTGCTAAATTCTGAGAGACC 58.270 41.667 0.00 0.00 31.64 3.85
154 155 5.514914 CGAGAGTTGCTAAATTCTGAGAGAC 59.485 44.000 0.00 0.00 32.89 3.36
155 156 5.416013 TCGAGAGTTGCTAAATTCTGAGAGA 59.584 40.000 0.00 0.00 32.89 3.10
156 157 5.514914 GTCGAGAGTTGCTAAATTCTGAGAG 59.485 44.000 0.00 0.00 32.89 3.20
157 158 5.403246 GTCGAGAGTTGCTAAATTCTGAGA 58.597 41.667 0.00 0.00 32.89 3.27
158 159 4.564769 GGTCGAGAGTTGCTAAATTCTGAG 59.435 45.833 0.00 0.00 32.89 3.35
159 160 4.021456 TGGTCGAGAGTTGCTAAATTCTGA 60.021 41.667 0.00 0.00 32.89 3.27
160 161 4.245660 TGGTCGAGAGTTGCTAAATTCTG 58.754 43.478 0.00 0.00 32.89 3.02
161 162 4.537135 TGGTCGAGAGTTGCTAAATTCT 57.463 40.909 0.00 0.00 35.25 2.40
162 163 4.026475 CGATGGTCGAGAGTTGCTAAATTC 60.026 45.833 0.00 0.00 43.74 2.17
163 164 3.865745 CGATGGTCGAGAGTTGCTAAATT 59.134 43.478 0.00 0.00 43.74 1.82
164 165 3.448686 CGATGGTCGAGAGTTGCTAAAT 58.551 45.455 0.00 0.00 43.74 1.40
165 166 2.416836 CCGATGGTCGAGAGTTGCTAAA 60.417 50.000 0.22 0.00 43.74 1.85
166 167 1.134367 CCGATGGTCGAGAGTTGCTAA 59.866 52.381 0.22 0.00 43.74 3.09
167 168 0.738975 CCGATGGTCGAGAGTTGCTA 59.261 55.000 0.22 0.00 43.74 3.49
168 169 0.965866 TCCGATGGTCGAGAGTTGCT 60.966 55.000 0.22 0.00 43.74 3.91
169 170 0.802607 GTCCGATGGTCGAGAGTTGC 60.803 60.000 0.22 0.00 43.74 4.17
170 171 0.811915 AGTCCGATGGTCGAGAGTTG 59.188 55.000 0.22 0.00 43.74 3.16
171 172 0.811915 CAGTCCGATGGTCGAGAGTT 59.188 55.000 0.22 0.00 43.74 3.01
172 173 0.035343 TCAGTCCGATGGTCGAGAGT 60.035 55.000 0.22 0.00 43.74 3.24
173 174 1.265635 GATCAGTCCGATGGTCGAGAG 59.734 57.143 0.22 0.00 43.74 3.20
174 175 1.309950 GATCAGTCCGATGGTCGAGA 58.690 55.000 0.22 0.00 43.74 4.04
175 176 0.312416 GGATCAGTCCGATGGTCGAG 59.688 60.000 0.22 0.00 43.74 4.04
176 177 1.107538 GGGATCAGTCCGATGGTCGA 61.108 60.000 0.22 0.00 46.09 4.20
177 178 1.364171 GGGATCAGTCCGATGGTCG 59.636 63.158 0.00 0.00 46.09 4.79
178 179 0.760945 AGGGGATCAGTCCGATGGTC 60.761 60.000 0.00 0.00 46.09 4.02
179 180 0.326618 AAGGGGATCAGTCCGATGGT 60.327 55.000 0.00 0.00 46.09 3.55
180 181 0.107456 CAAGGGGATCAGTCCGATGG 59.893 60.000 0.00 0.00 46.09 3.51
181 182 1.123077 TCAAGGGGATCAGTCCGATG 58.877 55.000 0.00 0.00 46.09 3.84
182 183 1.696336 CATCAAGGGGATCAGTCCGAT 59.304 52.381 0.00 0.00 46.09 4.18
183 184 1.123077 CATCAAGGGGATCAGTCCGA 58.877 55.000 0.00 0.00 46.09 4.55
184 185 0.533755 GCATCAAGGGGATCAGTCCG 60.534 60.000 0.00 0.00 46.09 4.79
185 186 0.548031 TGCATCAAGGGGATCAGTCC 59.452 55.000 0.00 0.00 44.29 3.85
186 187 2.653234 ATGCATCAAGGGGATCAGTC 57.347 50.000 0.00 0.00 32.57 3.51
187 188 3.393426 AAATGCATCAAGGGGATCAGT 57.607 42.857 0.00 0.00 32.57 3.41
188 189 3.243301 CGAAAATGCATCAAGGGGATCAG 60.243 47.826 0.00 0.00 32.57 2.90
189 190 2.689471 CGAAAATGCATCAAGGGGATCA 59.311 45.455 0.00 0.00 32.57 2.92
190 191 2.035066 CCGAAAATGCATCAAGGGGATC 59.965 50.000 0.00 0.00 32.57 3.36
191 192 2.034124 CCGAAAATGCATCAAGGGGAT 58.966 47.619 0.00 0.00 36.39 3.85
192 193 1.473258 CCGAAAATGCATCAAGGGGA 58.527 50.000 0.00 0.00 0.00 4.81
193 194 0.179103 GCCGAAAATGCATCAAGGGG 60.179 55.000 0.00 0.00 0.00 4.79
194 195 0.179103 GGCCGAAAATGCATCAAGGG 60.179 55.000 0.00 0.73 0.00 3.95
195 196 0.526096 CGGCCGAAAATGCATCAAGG 60.526 55.000 24.07 2.76 0.00 3.61
196 197 0.171007 ACGGCCGAAAATGCATCAAG 59.829 50.000 35.90 0.00 0.00 3.02
197 198 0.170116 GACGGCCGAAAATGCATCAA 59.830 50.000 35.90 0.00 0.00 2.57
198 199 0.676466 AGACGGCCGAAAATGCATCA 60.676 50.000 35.90 0.00 0.00 3.07
199 200 0.248215 CAGACGGCCGAAAATGCATC 60.248 55.000 35.90 16.59 0.00 3.91
200 201 0.676466 TCAGACGGCCGAAAATGCAT 60.676 50.000 35.90 6.14 0.00 3.96
201 202 0.676466 ATCAGACGGCCGAAAATGCA 60.676 50.000 35.90 13.61 0.00 3.96
202 203 0.028110 GATCAGACGGCCGAAAATGC 59.972 55.000 35.90 13.09 0.00 3.56
203 204 1.368641 TGATCAGACGGCCGAAAATG 58.631 50.000 35.90 22.80 0.00 2.32
204 205 2.009774 CTTGATCAGACGGCCGAAAAT 58.990 47.619 35.90 18.92 0.00 1.82
205 206 1.438651 CTTGATCAGACGGCCGAAAA 58.561 50.000 35.90 14.60 0.00 2.29
206 207 1.019278 GCTTGATCAGACGGCCGAAA 61.019 55.000 35.90 14.20 0.00 3.46
207 208 1.447838 GCTTGATCAGACGGCCGAA 60.448 57.895 35.90 13.03 0.00 4.30
208 209 1.888436 AAGCTTGATCAGACGGCCGA 61.888 55.000 35.90 10.13 0.00 5.54
209 210 1.424493 GAAGCTTGATCAGACGGCCG 61.424 60.000 26.86 26.86 0.00 6.13
210 211 0.107945 AGAAGCTTGATCAGACGGCC 60.108 55.000 2.10 0.00 0.00 6.13
211 212 2.099921 TCTAGAAGCTTGATCAGACGGC 59.900 50.000 2.10 0.00 0.00 5.68
212 213 4.037327 TCATCTAGAAGCTTGATCAGACGG 59.963 45.833 2.10 0.00 0.00 4.79
213 214 4.975502 GTCATCTAGAAGCTTGATCAGACG 59.024 45.833 2.10 0.00 0.00 4.18
214 215 5.068987 AGGTCATCTAGAAGCTTGATCAGAC 59.931 44.000 2.10 5.56 0.00 3.51
215 216 5.207354 AGGTCATCTAGAAGCTTGATCAGA 58.793 41.667 2.10 0.75 0.00 3.27
216 217 5.534207 AGGTCATCTAGAAGCTTGATCAG 57.466 43.478 2.10 0.00 0.00 2.90
217 218 5.009110 CGTAGGTCATCTAGAAGCTTGATCA 59.991 44.000 2.10 0.00 0.00 2.92
218 219 5.457140 CGTAGGTCATCTAGAAGCTTGATC 58.543 45.833 2.10 0.00 0.00 2.92
219 220 4.261825 GCGTAGGTCATCTAGAAGCTTGAT 60.262 45.833 2.10 0.00 0.00 2.57
220 221 3.066900 GCGTAGGTCATCTAGAAGCTTGA 59.933 47.826 2.10 0.00 0.00 3.02
221 222 3.376540 GCGTAGGTCATCTAGAAGCTTG 58.623 50.000 2.10 0.00 0.00 4.01
222 223 2.362717 GGCGTAGGTCATCTAGAAGCTT 59.637 50.000 0.00 0.00 0.00 3.74
223 224 1.957877 GGCGTAGGTCATCTAGAAGCT 59.042 52.381 0.00 0.00 0.00 3.74
224 225 1.335142 CGGCGTAGGTCATCTAGAAGC 60.335 57.143 0.00 0.00 0.00 3.86
225 226 1.948145 ACGGCGTAGGTCATCTAGAAG 59.052 52.381 12.58 0.00 0.00 2.85
226 227 2.048444 ACGGCGTAGGTCATCTAGAA 57.952 50.000 12.58 0.00 0.00 2.10
227 228 1.674441 CAACGGCGTAGGTCATCTAGA 59.326 52.381 15.20 0.00 0.00 2.43
228 229 1.269102 CCAACGGCGTAGGTCATCTAG 60.269 57.143 15.20 0.00 0.00 2.43
229 230 0.742505 CCAACGGCGTAGGTCATCTA 59.257 55.000 15.20 0.00 0.00 1.98
230 231 0.968901 TCCAACGGCGTAGGTCATCT 60.969 55.000 15.20 0.00 0.00 2.90
231 232 0.104304 ATCCAACGGCGTAGGTCATC 59.896 55.000 15.20 0.00 0.00 2.92
232 233 0.104304 GATCCAACGGCGTAGGTCAT 59.896 55.000 15.20 0.80 0.00 3.06
233 234 1.514087 GATCCAACGGCGTAGGTCA 59.486 57.895 15.20 0.00 0.00 4.02
234 235 1.588139 CGATCCAACGGCGTAGGTC 60.588 63.158 15.20 13.16 0.00 3.85
235 236 2.001361 CTCGATCCAACGGCGTAGGT 62.001 60.000 15.20 3.68 0.00 3.08
236 237 1.299165 CTCGATCCAACGGCGTAGG 60.299 63.158 15.20 9.01 0.00 3.18
237 238 1.299165 CCTCGATCCAACGGCGTAG 60.299 63.158 15.20 8.52 0.00 3.51
238 239 2.802792 CCTCGATCCAACGGCGTA 59.197 61.111 15.20 0.00 0.00 4.42
239 240 4.814294 GCCTCGATCCAACGGCGT 62.814 66.667 6.77 6.77 32.22 5.68
241 242 4.162690 AGGCCTCGATCCAACGGC 62.163 66.667 0.00 2.61 41.75 5.68
242 243 2.107141 GAGGCCTCGATCCAACGG 59.893 66.667 19.06 0.00 0.00 4.44
252 253 3.124686 CTACAGGAGCGAGGCCTC 58.875 66.667 23.79 23.79 32.12 4.70
253 254 3.151022 GCTACAGGAGCGAGGCCT 61.151 66.667 3.86 3.86 42.62 5.19
261 262 5.692204 CGGTTACTATTCATTGCTACAGGAG 59.308 44.000 0.00 0.00 0.00 3.69
262 263 5.128171 ACGGTTACTATTCATTGCTACAGGA 59.872 40.000 0.00 0.00 0.00 3.86
263 264 5.357257 ACGGTTACTATTCATTGCTACAGG 58.643 41.667 0.00 0.00 0.00 4.00
264 265 6.903883 AACGGTTACTATTCATTGCTACAG 57.096 37.500 0.00 0.00 0.00 2.74
265 266 6.314400 GGAAACGGTTACTATTCATTGCTACA 59.686 38.462 0.00 0.00 0.00 2.74
266 267 6.238293 GGGAAACGGTTACTATTCATTGCTAC 60.238 42.308 0.00 0.00 0.00 3.58
267 268 5.818857 GGGAAACGGTTACTATTCATTGCTA 59.181 40.000 0.00 0.00 0.00 3.49
268 269 4.638865 GGGAAACGGTTACTATTCATTGCT 59.361 41.667 0.00 0.00 0.00 3.91
269 270 4.638865 AGGGAAACGGTTACTATTCATTGC 59.361 41.667 0.00 0.00 0.00 3.56
270 271 5.448632 GCAGGGAAACGGTTACTATTCATTG 60.449 44.000 0.00 0.00 0.00 2.82
271 272 4.638865 GCAGGGAAACGGTTACTATTCATT 59.361 41.667 0.00 0.00 0.00 2.57
272 273 4.196971 GCAGGGAAACGGTTACTATTCAT 58.803 43.478 0.00 0.00 0.00 2.57
273 274 3.008157 TGCAGGGAAACGGTTACTATTCA 59.992 43.478 0.00 0.00 0.00 2.57
274 275 3.602483 TGCAGGGAAACGGTTACTATTC 58.398 45.455 0.00 0.00 0.00 1.75
275 276 3.706600 TGCAGGGAAACGGTTACTATT 57.293 42.857 0.00 0.00 0.00 1.73
276 277 3.926058 ATGCAGGGAAACGGTTACTAT 57.074 42.857 0.00 0.00 0.00 2.12
277 278 3.706600 AATGCAGGGAAACGGTTACTA 57.293 42.857 0.00 0.00 0.00 1.82
278 279 2.579410 AATGCAGGGAAACGGTTACT 57.421 45.000 0.00 0.00 0.00 2.24
279 280 3.653539 AAAATGCAGGGAAACGGTTAC 57.346 42.857 0.00 0.00 0.00 2.50
280 281 3.800604 GCAAAAATGCAGGGAAACGGTTA 60.801 43.478 0.00 0.00 34.41 2.85
281 282 2.832563 CAAAAATGCAGGGAAACGGTT 58.167 42.857 0.00 0.00 0.00 4.44
282 283 1.540146 GCAAAAATGCAGGGAAACGGT 60.540 47.619 0.00 0.00 34.41 4.83
283 284 1.147473 GCAAAAATGCAGGGAAACGG 58.853 50.000 0.00 0.00 34.41 4.44
284 285 2.153366 AGCAAAAATGCAGGGAAACG 57.847 45.000 3.41 0.00 37.25 3.60
285 286 4.631131 AGTAAGCAAAAATGCAGGGAAAC 58.369 39.130 3.41 0.00 37.25 2.78
286 287 4.262420 GGAGTAAGCAAAAATGCAGGGAAA 60.262 41.667 3.41 0.00 37.25 3.13
287 288 3.258123 GGAGTAAGCAAAAATGCAGGGAA 59.742 43.478 3.41 0.00 37.25 3.97
288 289 2.825532 GGAGTAAGCAAAAATGCAGGGA 59.174 45.455 3.41 0.00 37.25 4.20
289 290 2.415893 CGGAGTAAGCAAAAATGCAGGG 60.416 50.000 3.41 0.00 37.25 4.45
290 291 2.228822 ACGGAGTAAGCAAAAATGCAGG 59.771 45.455 3.41 0.00 41.94 4.85
291 292 3.236816 CACGGAGTAAGCAAAAATGCAG 58.763 45.455 3.41 0.00 41.61 4.41
292 293 2.030363 CCACGGAGTAAGCAAAAATGCA 60.030 45.455 3.41 0.00 41.61 3.96
293 294 2.030274 ACCACGGAGTAAGCAAAAATGC 60.030 45.455 0.00 0.00 41.61 3.56
294 295 3.915437 ACCACGGAGTAAGCAAAAATG 57.085 42.857 0.00 0.00 41.61 2.32
295 296 4.555906 CGAAACCACGGAGTAAGCAAAAAT 60.556 41.667 0.00 0.00 41.61 1.82
301 302 1.347320 CTCGAAACCACGGAGTAAGC 58.653 55.000 0.00 0.00 41.61 3.09
321 322 2.014857 CCCACACATCAGCAAGATCTG 58.985 52.381 0.00 0.00 33.72 2.90
322 323 1.064906 CCCCACACATCAGCAAGATCT 60.065 52.381 0.00 0.00 33.72 2.75
323 324 1.340405 ACCCCACACATCAGCAAGATC 60.340 52.381 0.00 0.00 33.72 2.75
324 325 0.700564 ACCCCACACATCAGCAAGAT 59.299 50.000 0.00 0.00 37.48 2.40
325 326 0.036732 GACCCCACACATCAGCAAGA 59.963 55.000 0.00 0.00 0.00 3.02
328 329 2.756400 GGACCCCACACATCAGCA 59.244 61.111 0.00 0.00 0.00 4.41
334 335 4.954118 AGCGAGGGACCCCACACA 62.954 66.667 7.00 0.00 38.92 3.72
358 359 2.124320 ACAAACTGGCAGGCGTGT 60.124 55.556 20.34 15.78 0.00 4.49
372 373 2.046009 TAACTCGCCCAGCCACACAA 62.046 55.000 0.00 0.00 0.00 3.33
373 374 2.046009 TTAACTCGCCCAGCCACACA 62.046 55.000 0.00 0.00 0.00 3.72
385 386 0.446222 CGGGTGGCACAATTAACTCG 59.554 55.000 20.82 0.00 44.16 4.18
390 391 3.865477 CCTACGGGTGGCACAATTA 57.135 52.632 20.82 5.61 44.16 1.40
391 392 4.734652 CCTACGGGTGGCACAATT 57.265 55.556 20.82 4.63 44.16 2.32
413 414 2.296471 ACGAGATATTTAGCCACCGGAG 59.704 50.000 9.46 0.00 0.00 4.63
416 417 1.792949 GCACGAGATATTTAGCCACCG 59.207 52.381 0.00 0.00 0.00 4.94
418 419 2.833794 TGGCACGAGATATTTAGCCAC 58.166 47.619 0.00 0.00 46.25 5.01
423 424 1.539496 GGCGGTGGCACGAGATATTTA 60.539 52.381 12.17 0.00 42.47 1.40
473 474 0.393808 CCCACCACAGGAAATACCGG 60.394 60.000 0.00 0.00 44.74 5.28
511 512 2.593468 ATCCATCCACGAGCCAACCG 62.593 60.000 0.00 0.00 0.00 4.44
588 590 1.381872 AGGTAGGCGGCATGAGAGT 60.382 57.895 13.08 0.00 0.00 3.24
687 689 2.040779 GGGGAGTGGTAGGAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
724 727 4.500116 GCGACTCGGCCTCCTCAC 62.500 72.222 0.00 0.00 0.00 3.51
816 819 1.457643 CTCCCTGGGATACGAGCCA 60.458 63.158 17.51 0.00 41.80 4.75
876 887 2.270527 GCTGACCAGGAAGGGAGC 59.729 66.667 0.00 0.00 43.89 4.70
877 888 2.581354 CGCTGACCAGGAAGGGAG 59.419 66.667 0.00 0.00 43.89 4.30
878 889 3.706373 GCGCTGACCAGGAAGGGA 61.706 66.667 0.00 0.00 43.89 4.20
879 890 4.785453 GGCGCTGACCAGGAAGGG 62.785 72.222 7.64 0.00 43.89 3.95
904 921 3.894832 TGGTCCGCCAGTAACCTT 58.105 55.556 0.00 0.00 40.46 3.50
959 976 2.625737 CATGTGCTCATTCTCCGTCTT 58.374 47.619 0.00 0.00 31.15 3.01
1053 1071 5.310409 TCACCTTCCAAATCCCATCTATC 57.690 43.478 0.00 0.00 0.00 2.08
1137 1166 6.872585 AAAAAGGCATATTCCAAATCCAGA 57.127 33.333 0.00 0.00 0.00 3.86
1172 1229 4.738541 GCAATCCAATGAGAAAATCGCCAT 60.739 41.667 0.00 0.00 0.00 4.40
1268 2372 1.732259 GTAGTTGACAGACAATGCCGG 59.268 52.381 0.00 0.00 40.76 6.13
1316 2420 7.962995 ACTGAGATCATAGACTTACAGGAAA 57.037 36.000 0.00 0.00 0.00 3.13
1352 6328 6.737608 ACTTTATGGGATTTTAGCAGGGTTA 58.262 36.000 0.00 0.00 0.00 2.85
1378 6357 8.475639 AGAAATCAATTCCTCAATGATTCCAAG 58.524 33.333 1.18 0.00 38.94 3.61
1409 6388 1.898574 CCACGCTTTGCCTTCCTGT 60.899 57.895 0.00 0.00 0.00 4.00
1452 6431 4.128554 TCTTTAAAGCGAGACAAAAGCG 57.871 40.909 10.51 0.00 35.78 4.68
1468 6447 5.529289 ACACATAGGTCTCCTCCATCTTTA 58.471 41.667 0.00 0.00 34.61 1.85
1491 6470 2.300967 GCAGGTCCATGGGGAGTGA 61.301 63.158 13.02 0.00 46.12 3.41
1572 6556 6.968904 CCGTTGATTAATTGAGATGAAACTGG 59.031 38.462 0.00 0.00 0.00 4.00
1632 6617 5.279910 CCTTTTTATGGTCATTGCCTCCAAA 60.280 40.000 0.00 0.00 34.05 3.28
1635 6620 4.023291 TCCTTTTTATGGTCATTGCCTCC 58.977 43.478 0.00 0.00 0.00 4.30
1746 6773 3.138798 CGGGATGGAGTCGGTCGT 61.139 66.667 0.00 0.00 0.00 4.34
1755 6782 0.975556 TTAGCTGTGCTCGGGATGGA 60.976 55.000 0.00 0.00 40.44 3.41
1910 7099 4.871513 GGTCTGAACCCAAAAATCAACTC 58.128 43.478 0.00 0.00 39.93 3.01
1911 7100 4.937201 GGTCTGAACCCAAAAATCAACT 57.063 40.909 0.00 0.00 39.93 3.16
1952 7151 2.899256 ACCCAAATACAGCAAGTGCAAT 59.101 40.909 6.00 0.00 45.16 3.56
2120 7347 7.026562 TCCTACAAAACATCATTGCATTAACG 58.973 34.615 0.00 0.00 0.00 3.18
2162 7429 8.298854 TGTTATCTTGTCCTGAATCAATTTGTG 58.701 33.333 0.00 0.00 0.00 3.33
2268 7535 3.324846 ACTCTGTTGGCTGAGACATACAA 59.675 43.478 0.00 0.00 41.44 2.41
2313 7580 3.130633 GCGATGTGGTATCATGTTGCTA 58.869 45.455 0.00 0.00 0.00 3.49
2332 7599 1.398960 CCTTTTGCTTGTCGAAGAGCG 60.399 52.381 14.36 2.99 41.75 5.03
2333 7600 1.873591 TCCTTTTGCTTGTCGAAGAGC 59.126 47.619 12.91 12.91 36.95 4.09
2363 7630 2.497273 TGACATGTGATCGGTCATCTGT 59.503 45.455 13.89 13.89 36.69 3.41
2384 7651 3.753272 GCAACACACCTGAAGTACATCAT 59.247 43.478 0.51 0.00 0.00 2.45
2537 7804 4.299586 TGAATAGGCTCATGACAAACCA 57.700 40.909 0.00 0.00 0.00 3.67
2546 7813 3.750130 GTCGATTGCATGAATAGGCTCAT 59.250 43.478 0.00 0.00 36.45 2.90
2584 7851 3.517612 AGGTTGACCCTAACAGCTTAGA 58.482 45.455 0.00 0.00 43.87 2.10
2629 7896 7.379059 TTCTGATGTACCATCACCAGATATT 57.621 36.000 2.88 0.00 31.88 1.28
2745 8023 5.823045 GTCCTATCAAAGTATTCCCAACAGG 59.177 44.000 0.00 0.00 0.00 4.00
2884 8163 9.151471 GAATTAGCAACTGTAGTTTCATCACTA 57.849 33.333 0.00 0.00 35.83 2.74
2972 8341 3.006940 AGCAGAAATAACGGCGAATGAA 58.993 40.909 16.62 0.00 36.22 2.57
2996 8365 9.817365 CTACTGCCTGATAATTTCAAATAATCG 57.183 33.333 0.00 0.00 32.78 3.34
3021 8390 2.632763 AGTAGGACTTGAAGAGGGCT 57.367 50.000 0.00 0.00 0.00 5.19
3086 8455 7.012421 GCCCTTAACATCAAGAAGTTGGTATAG 59.988 40.741 1.32 0.00 34.09 1.31
3134 8505 0.954452 GGTGGAAACTGAAGCACCAG 59.046 55.000 0.00 4.12 39.93 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.