Multiple sequence alignment - TraesCS5B01G139900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G139900 chr5B 100.000 6604 0 0 1 6604 263933608 263940211 0.000000e+00 12196.0
1 TraesCS5B01G139900 chr5B 87.045 687 70 11 5937 6604 711074556 711073870 0.000000e+00 758.0
2 TraesCS5B01G139900 chr5B 89.610 154 14 2 3245 3397 645807622 645807470 1.880000e-45 195.0
3 TraesCS5B01G139900 chr5B 88.387 155 17 1 3244 3397 175850764 175850918 1.130000e-42 185.0
4 TraesCS5B01G139900 chr5B 93.407 91 6 0 5938 6028 465816509 465816599 1.160000e-27 135.0
5 TraesCS5B01G139900 chr5B 100.000 34 0 0 3496 3529 654481948 654481915 5.530000e-06 63.9
6 TraesCS5B01G139900 chr5D 95.352 4927 134 26 773 5653 239586264 239581387 0.000000e+00 7742.0
7 TraesCS5B01G139900 chr5D 85.163 674 92 5 14 682 233416477 233415807 0.000000e+00 684.0
8 TraesCS5B01G139900 chr5D 84.615 78 5 3 3180 3250 519637230 519637153 3.300000e-08 71.3
9 TraesCS5B01G139900 chr5D 86.667 60 8 0 5778 5837 362661771 362661712 4.270000e-07 67.6
10 TraesCS5B01G139900 chr5A 94.106 1561 56 4 3507 5033 314145814 314147372 0.000000e+00 2340.0
11 TraesCS5B01G139900 chr5A 89.178 1765 84 41 1700 3460 314144152 314145813 0.000000e+00 2102.0
12 TraesCS5B01G139900 chr5A 94.183 894 28 10 773 1665 314143284 314144154 0.000000e+00 1341.0
13 TraesCS5B01G139900 chr5A 94.040 604 23 6 5019 5621 314148649 314149240 0.000000e+00 904.0
14 TraesCS5B01G139900 chr5A 87.277 448 36 5 6167 6604 74514393 74514829 5.950000e-135 492.0
15 TraesCS5B01G139900 chr5A 84.188 234 20 4 5938 6169 74513901 74514119 1.870000e-50 211.0
16 TraesCS5B01G139900 chr2D 90.365 685 63 1 1 682 79341201 79341885 0.000000e+00 896.0
17 TraesCS5B01G139900 chr2D 84.669 287 27 11 5950 6230 261956052 261955777 3.030000e-68 270.0
18 TraesCS5B01G139900 chr3B 87.097 682 83 3 4 682 114089082 114088403 0.000000e+00 767.0
19 TraesCS5B01G139900 chr3B 85.890 163 19 4 5779 5939 673137721 673137561 3.170000e-38 171.0
20 TraesCS5B01G139900 chr3B 100.000 29 0 0 5743 5771 82832422 82832450 3.000000e-03 54.7
21 TraesCS5B01G139900 chr1A 86.317 687 74 6 5937 6604 536305163 536305848 0.000000e+00 730.0
22 TraesCS5B01G139900 chr1A 83.871 155 21 2 5778 5932 160517748 160517898 1.920000e-30 145.0
23 TraesCS5B01G139900 chr1A 92.308 91 7 0 5938 6028 362065243 362065153 5.370000e-26 130.0
24 TraesCS5B01G139900 chr1A 93.939 66 4 0 2777 2842 578209373 578209438 4.210000e-17 100.0
25 TraesCS5B01G139900 chr1A 88.312 77 9 0 2767 2843 534025078 534025154 7.050000e-15 93.5
26 TraesCS5B01G139900 chr2A 82.284 429 65 6 1 419 516293990 516294417 1.750000e-95 361.0
27 TraesCS5B01G139900 chr2A 91.339 254 22 0 5938 6191 761546912 761547165 1.360000e-91 348.0
28 TraesCS5B01G139900 chr2A 93.478 46 3 0 3484 3529 683634688 683634733 1.190000e-07 69.4
29 TraesCS5B01G139900 chr7A 78.894 398 48 20 3147 3530 403938896 403939271 3.080000e-58 237.0
30 TraesCS5B01G139900 chr7A 97.436 39 1 0 697 735 517891922 517891884 4.270000e-07 67.6
31 TraesCS5B01G139900 chr4D 90.323 155 13 2 3244 3397 329540574 329540421 1.120000e-47 202.0
32 TraesCS5B01G139900 chr4D 86.047 172 19 3 3295 3461 258907463 258907634 5.260000e-41 180.0
33 TraesCS5B01G139900 chr1B 88.889 153 16 1 3245 3396 314145131 314145283 3.140000e-43 187.0
34 TraesCS5B01G139900 chr1B 90.625 96 9 0 5933 6028 509568538 509568633 1.930000e-25 128.0
35 TraesCS5B01G139900 chr4B 88.387 155 17 1 3244 3397 584725185 584725031 1.130000e-42 185.0
36 TraesCS5B01G139900 chr4B 89.256 121 13 0 6085 6205 363651044 363651164 1.150000e-32 152.0
37 TraesCS5B01G139900 chr4B 92.632 95 7 0 5933 6027 602991549 602991643 3.210000e-28 137.0
38 TraesCS5B01G139900 chr4A 85.311 177 20 4 3294 3464 242899441 242899617 1.890000e-40 178.0
39 TraesCS5B01G139900 chr7B 95.506 89 4 0 5938 6026 690561201 690561113 6.900000e-30 143.0
40 TraesCS5B01G139900 chr7B 95.506 89 4 0 5938 6026 690592794 690592706 6.900000e-30 143.0
41 TraesCS5B01G139900 chr7B 94.643 56 3 0 697 752 615681563 615681508 3.280000e-13 87.9
42 TraesCS5B01G139900 chr7D 86.555 119 14 2 3413 3530 365822574 365822691 5.370000e-26 130.0
43 TraesCS5B01G139900 chr7D 89.157 83 9 0 2760 2842 54793404 54793322 3.260000e-18 104.0
44 TraesCS5B01G139900 chr7D 94.545 55 3 0 6155 6209 20434728 20434782 1.180000e-12 86.1
45 TraesCS5B01G139900 chr7D 97.500 40 1 0 712 751 131750212 131750251 1.190000e-07 69.4
46 TraesCS5B01G139900 chr7D 86.441 59 8 0 3470 3528 403742130 403742072 1.540000e-06 65.8
47 TraesCS5B01G139900 chr6D 90.476 84 7 1 2760 2842 464967313 464967230 7.000000e-20 110.0
48 TraesCS5B01G139900 chr6D 96.296 54 2 0 699 752 35656089 35656142 9.120000e-14 89.8
49 TraesCS5B01G139900 chr6D 100.000 39 0 0 712 750 410119270 410119232 9.190000e-09 73.1
50 TraesCS5B01G139900 chr3A 88.312 77 9 0 2767 2843 514047532 514047456 7.050000e-15 93.5
51 TraesCS5B01G139900 chr2B 88.312 77 9 0 2767 2843 25577103 25577027 7.050000e-15 93.5
52 TraesCS5B01G139900 chr2B 88.312 77 9 0 2767 2843 796904518 796904442 7.050000e-15 93.5
53 TraesCS5B01G139900 chr3D 92.063 63 5 0 3467 3529 378197507 378197445 9.120000e-14 89.8
54 TraesCS5B01G139900 chr6B 88.679 53 5 1 3482 3533 8413782 8413834 5.530000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G139900 chr5B 263933608 263940211 6603 False 12196.00 12196 100.00000 1 6604 1 chr5B.!!$F2 6603
1 TraesCS5B01G139900 chr5B 711073870 711074556 686 True 758.00 758 87.04500 5937 6604 1 chr5B.!!$R3 667
2 TraesCS5B01G139900 chr5D 239581387 239586264 4877 True 7742.00 7742 95.35200 773 5653 1 chr5D.!!$R2 4880
3 TraesCS5B01G139900 chr5D 233415807 233416477 670 True 684.00 684 85.16300 14 682 1 chr5D.!!$R1 668
4 TraesCS5B01G139900 chr5A 314143284 314149240 5956 False 1671.75 2340 92.87675 773 5621 4 chr5A.!!$F2 4848
5 TraesCS5B01G139900 chr5A 74513901 74514829 928 False 351.50 492 85.73250 5938 6604 2 chr5A.!!$F1 666
6 TraesCS5B01G139900 chr2D 79341201 79341885 684 False 896.00 896 90.36500 1 682 1 chr2D.!!$F1 681
7 TraesCS5B01G139900 chr3B 114088403 114089082 679 True 767.00 767 87.09700 4 682 1 chr3B.!!$R1 678
8 TraesCS5B01G139900 chr1A 536305163 536305848 685 False 730.00 730 86.31700 5937 6604 1 chr1A.!!$F3 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 779 0.034896 GCCTAGCGCTGCCCTTATTA 59.965 55.000 22.90 0.0 0.0 0.98 F
848 852 0.991920 TGCCAGCTAAGCTAAACCCT 59.008 50.000 9.15 0.0 36.4 4.34 F
1844 1857 1.068333 CCTGTTTTTGCATGGACTCCG 60.068 52.381 0.00 0.0 0.0 4.63 F
2317 2332 0.034896 CCGGTGGTAGCTTTGACAGT 59.965 55.000 0.00 0.0 0.0 3.55 F
3540 3566 0.468400 AAACAAACGGGGCCTGCTTA 60.468 50.000 13.63 0.0 0.0 3.09 F
4228 4271 0.765510 AAGGCGACCAAGGAGAAAGT 59.234 50.000 0.00 0.0 0.0 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2100 0.039764 GGAAAAGGCCTAGCAGGGTT 59.960 55.0 5.16 0.00 35.37 4.11 R
2088 2101 1.140134 TGGAAAAGGCCTAGCAGGGT 61.140 55.0 5.16 0.00 35.37 4.34 R
3011 3037 1.019278 TTTCATTCTCTGACGCCGGC 61.019 55.0 19.07 19.07 32.17 6.13 R
3905 3948 0.034186 CCTCCCATTGCAGCTTGGTA 60.034 55.0 12.37 0.00 0.00 3.25 R
5350 6707 0.179032 TCGTGGTGTGTCAAAGCCAT 60.179 50.0 0.00 0.00 33.20 4.40 R
6056 7413 0.187606 TAAGGCTCGGGAGATGGCTA 59.812 55.0 0.00 0.00 40.19 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.258372 ACTTCTCGACCAAGATTGCACTA 59.742 43.478 6.40 0.00 0.00 2.74
60 61 3.232213 TCTCGACCAAGATTGCACTAC 57.768 47.619 0.00 0.00 0.00 2.73
73 74 1.204146 GCACTACCCAATCTCCTCCA 58.796 55.000 0.00 0.00 0.00 3.86
82 83 0.457851 AATCTCCTCCAGCGAACGAG 59.542 55.000 0.00 0.00 0.00 4.18
141 142 4.117661 GTCCGCGTTCGAGCTCCT 62.118 66.667 8.47 0.00 38.10 3.69
151 152 1.107114 TCGAGCTCCTTCTCCACATC 58.893 55.000 8.47 0.00 0.00 3.06
154 155 2.387757 GAGCTCCTTCTCCACATCTCT 58.612 52.381 0.87 0.00 0.00 3.10
155 156 3.561143 GAGCTCCTTCTCCACATCTCTA 58.439 50.000 0.87 0.00 0.00 2.43
178 179 0.107459 GCGAGAAATCCCTCAGCCTT 60.107 55.000 0.00 0.00 32.86 4.35
202 203 0.980754 TGTGGATCAGCGTGGGGTAT 60.981 55.000 0.00 0.00 0.00 2.73
379 383 1.219124 GCAGTCGATCAGGCAGGAA 59.781 57.895 0.00 0.00 0.00 3.36
382 386 1.751351 CAGTCGATCAGGCAGGAACTA 59.249 52.381 0.00 0.00 36.02 2.24
410 414 4.379243 CTGCCGCCGTCTCCTTGT 62.379 66.667 0.00 0.00 0.00 3.16
415 419 1.079127 CGCCGTCTCCTTGTTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
454 458 3.686241 CCTCGATCAAAATGTCAGCTTGA 59.314 43.478 0.00 2.73 33.82 3.02
639 643 0.394216 CGATGCCTGGGAATGTCCAA 60.394 55.000 0.00 0.00 38.64 3.53
640 644 1.751733 CGATGCCTGGGAATGTCCAAT 60.752 52.381 0.00 0.00 38.64 3.16
682 686 3.723235 CTCCTCGCATGACACCGGG 62.723 68.421 6.32 0.00 0.00 5.73
683 687 3.770040 CCTCGCATGACACCGGGA 61.770 66.667 6.32 0.00 0.00 5.14
684 688 2.509336 CTCGCATGACACCGGGAC 60.509 66.667 6.32 0.00 0.00 4.46
685 689 4.077184 TCGCATGACACCGGGACC 62.077 66.667 6.32 0.00 0.00 4.46
687 691 4.388499 GCATGACACCGGGACCGT 62.388 66.667 6.32 0.00 37.81 4.83
688 692 2.345991 CATGACACCGGGACCGTT 59.654 61.111 6.32 0.00 37.81 4.44
689 693 1.740296 CATGACACCGGGACCGTTC 60.740 63.158 6.32 3.93 37.81 3.95
690 694 2.951101 ATGACACCGGGACCGTTCC 61.951 63.158 6.32 0.00 41.95 3.62
691 695 3.618750 GACACCGGGACCGTTCCA 61.619 66.667 6.32 0.00 44.98 3.53
692 696 3.162858 ACACCGGGACCGTTCCAA 61.163 61.111 6.32 0.00 44.98 3.53
693 697 2.349755 CACCGGGACCGTTCCAAT 59.650 61.111 6.32 0.00 44.98 3.16
694 698 1.193462 ACACCGGGACCGTTCCAATA 61.193 55.000 6.32 0.00 44.98 1.90
695 699 0.461339 CACCGGGACCGTTCCAATAG 60.461 60.000 6.32 0.00 44.98 1.73
696 700 0.906282 ACCGGGACCGTTCCAATAGT 60.906 55.000 6.32 0.00 44.98 2.12
697 701 0.179092 CCGGGACCGTTCCAATAGTC 60.179 60.000 10.17 0.00 44.98 2.59
698 702 0.526954 CGGGACCGTTCCAATAGTCG 60.527 60.000 0.00 0.00 44.98 4.18
699 703 0.533951 GGGACCGTTCCAATAGTCGT 59.466 55.000 0.00 0.00 44.98 4.34
700 704 1.750778 GGGACCGTTCCAATAGTCGTA 59.249 52.381 0.00 0.00 44.98 3.43
701 705 2.480244 GGGACCGTTCCAATAGTCGTAC 60.480 54.545 0.00 0.00 44.98 3.67
702 706 2.444351 GACCGTTCCAATAGTCGTACG 58.556 52.381 9.53 9.53 0.00 3.67
703 707 2.083774 ACCGTTCCAATAGTCGTACGA 58.916 47.619 15.28 15.28 0.00 3.43
704 708 2.684881 ACCGTTCCAATAGTCGTACGAT 59.315 45.455 22.57 12.70 0.00 3.73
705 709 3.040795 CCGTTCCAATAGTCGTACGATG 58.959 50.000 22.57 15.04 0.00 3.84
706 710 3.040795 CGTTCCAATAGTCGTACGATGG 58.959 50.000 23.58 23.58 0.00 3.51
707 711 3.378339 GTTCCAATAGTCGTACGATGGG 58.622 50.000 27.00 17.29 0.00 4.00
708 712 2.934887 TCCAATAGTCGTACGATGGGA 58.065 47.619 27.00 19.03 31.87 4.37
709 713 3.289836 TCCAATAGTCGTACGATGGGAA 58.710 45.455 27.00 12.47 31.46 3.97
710 714 3.700539 TCCAATAGTCGTACGATGGGAAA 59.299 43.478 27.00 11.89 31.46 3.13
711 715 3.800506 CCAATAGTCGTACGATGGGAAAC 59.199 47.826 22.57 7.08 26.70 2.78
712 716 4.426416 CAATAGTCGTACGATGGGAAACA 58.574 43.478 22.57 1.26 0.00 2.83
713 717 2.649331 AGTCGTACGATGGGAAACAG 57.351 50.000 22.57 0.00 0.00 3.16
714 718 2.165167 AGTCGTACGATGGGAAACAGA 58.835 47.619 22.57 0.00 0.00 3.41
715 719 2.094854 AGTCGTACGATGGGAAACAGAC 60.095 50.000 22.57 4.19 0.00 3.51
716 720 1.203052 TCGTACGATGGGAAACAGACC 59.797 52.381 15.28 0.00 0.00 3.85
717 721 1.636988 GTACGATGGGAAACAGACCG 58.363 55.000 0.00 0.00 0.00 4.79
718 722 0.533491 TACGATGGGAAACAGACCGG 59.467 55.000 0.00 0.00 0.00 5.28
719 723 2.106683 CGATGGGAAACAGACCGGC 61.107 63.158 0.00 0.00 0.00 6.13
720 724 1.749258 GATGGGAAACAGACCGGCC 60.749 63.158 0.00 0.00 0.00 6.13
721 725 3.622060 ATGGGAAACAGACCGGCCG 62.622 63.158 21.04 21.04 0.00 6.13
722 726 4.011517 GGGAAACAGACCGGCCGA 62.012 66.667 30.73 0.00 0.00 5.54
723 727 2.031465 GGAAACAGACCGGCCGAA 59.969 61.111 30.73 0.00 0.00 4.30
724 728 1.598685 GGAAACAGACCGGCCGAAA 60.599 57.895 30.73 0.00 0.00 3.46
725 729 1.574702 GGAAACAGACCGGCCGAAAG 61.575 60.000 30.73 13.32 0.00 2.62
726 730 0.883370 GAAACAGACCGGCCGAAAGT 60.883 55.000 30.73 17.20 0.00 2.66
727 731 0.464916 AAACAGACCGGCCGAAAGTT 60.465 50.000 30.73 21.53 0.00 2.66
728 732 0.464916 AACAGACCGGCCGAAAGTTT 60.465 50.000 30.73 8.69 0.00 2.66
729 733 0.883370 ACAGACCGGCCGAAAGTTTC 60.883 55.000 30.73 12.41 0.00 2.78
738 742 2.172659 GAAAGTTTCGACCGGCGC 59.827 61.111 0.00 0.00 40.61 6.53
739 743 2.589442 AAAGTTTCGACCGGCGCA 60.589 55.556 10.83 0.00 40.61 6.09
740 744 2.759519 GAAAGTTTCGACCGGCGCAC 62.760 60.000 10.83 6.83 40.61 5.34
761 765 2.659897 CGCCTAGCTTGCGCCTAG 60.660 66.667 15.89 8.63 46.01 3.02
773 777 2.427753 GCCTAGCGCTGCCCTTAT 59.572 61.111 22.90 0.00 0.00 1.73
774 778 1.227973 GCCTAGCGCTGCCCTTATT 60.228 57.895 22.90 0.00 0.00 1.40
775 779 0.034896 GCCTAGCGCTGCCCTTATTA 59.965 55.000 22.90 0.00 0.00 0.98
776 780 1.339151 GCCTAGCGCTGCCCTTATTAT 60.339 52.381 22.90 0.00 0.00 1.28
777 781 2.876079 GCCTAGCGCTGCCCTTATTATT 60.876 50.000 22.90 0.00 0.00 1.40
778 782 3.618997 GCCTAGCGCTGCCCTTATTATTA 60.619 47.826 22.90 0.00 0.00 0.98
779 783 4.184629 CCTAGCGCTGCCCTTATTATTAG 58.815 47.826 22.90 3.85 0.00 1.73
780 784 3.059352 AGCGCTGCCCTTATTATTAGG 57.941 47.619 10.39 0.00 0.00 2.69
848 852 0.991920 TGCCAGCTAAGCTAAACCCT 59.008 50.000 9.15 0.00 36.40 4.34
1152 1161 3.159347 GGGGATTACGCCGGGACT 61.159 66.667 2.18 0.00 39.24 3.85
1265 1274 4.388499 GGGTCGCGGCTCAAGGAA 62.388 66.667 11.94 0.00 0.00 3.36
1471 1480 7.148641 TCATCTCCGATAAAGATTACAGCTTC 58.851 38.462 0.00 0.00 31.05 3.86
1480 1489 5.847670 AAGATTACAGCTTCACTTTCGTC 57.152 39.130 0.00 0.00 0.00 4.20
1744 1757 5.584253 TTCCCGAAAACAATGAGAAAACA 57.416 34.783 0.00 0.00 0.00 2.83
1759 1772 7.333528 TGAGAAAACAAGACTTTTGCATAGT 57.666 32.000 1.92 1.92 0.00 2.12
1760 1773 8.445275 TGAGAAAACAAGACTTTTGCATAGTA 57.555 30.769 2.30 0.00 0.00 1.82
1761 1774 8.898761 TGAGAAAACAAGACTTTTGCATAGTAA 58.101 29.630 2.30 0.00 0.00 2.24
1762 1775 9.170584 GAGAAAACAAGACTTTTGCATAGTAAC 57.829 33.333 2.30 0.00 0.00 2.50
1763 1776 8.682710 AGAAAACAAGACTTTTGCATAGTAACA 58.317 29.630 2.30 0.00 0.00 2.41
1764 1777 9.296400 GAAAACAAGACTTTTGCATAGTAACAA 57.704 29.630 2.30 0.00 0.00 2.83
1765 1778 8.628882 AAACAAGACTTTTGCATAGTAACAAC 57.371 30.769 2.30 0.00 0.00 3.32
1784 1797 6.455360 ACAACTCACAAATCAACTGATTGT 57.545 33.333 5.72 4.27 43.41 2.71
1792 1805 7.040548 TCACAAATCAACTGATTGTATTCTGCA 60.041 33.333 5.72 0.00 43.41 4.41
1844 1857 1.068333 CCTGTTTTTGCATGGACTCCG 60.068 52.381 0.00 0.00 0.00 4.63
1848 1861 2.739849 TTTTGCATGGACTCCGCCGA 62.740 55.000 0.00 0.00 0.00 5.54
1901 1914 1.147824 CATCCAATCCTCGCTGCCT 59.852 57.895 0.00 0.00 0.00 4.75
2080 2093 6.671614 TGCGTCCACATTAACTTTAATAGG 57.328 37.500 0.00 1.28 32.39 2.57
2082 2095 6.537301 TGCGTCCACATTAACTTTAATAGGAG 59.463 38.462 12.18 9.28 37.27 3.69
2083 2096 6.537660 GCGTCCACATTAACTTTAATAGGAGT 59.462 38.462 12.18 0.00 37.27 3.85
2084 2097 7.707893 GCGTCCACATTAACTTTAATAGGAGTA 59.292 37.037 12.18 0.00 37.27 2.59
2085 2098 9.245962 CGTCCACATTAACTTTAATAGGAGTAG 57.754 37.037 12.18 6.65 37.27 2.57
2247 2262 3.354678 GCGTCTTTGCCACCACAT 58.645 55.556 0.00 0.00 0.00 3.21
2283 2298 6.801862 GCAACAATTACCAATTCCGATATAGC 59.198 38.462 0.00 0.00 0.00 2.97
2317 2332 0.034896 CCGGTGGTAGCTTTGACAGT 59.965 55.000 0.00 0.00 0.00 3.55
2485 2501 1.359848 AGCTTGGCGATTCGTGTTAG 58.640 50.000 8.03 2.22 0.00 2.34
2571 2587 4.326826 CAAAATGCAGTCTTGGAGGAGTA 58.673 43.478 0.00 0.00 0.00 2.59
2584 2600 6.954684 TCTTGGAGGAGTAGTAATTCAGTTCT 59.045 38.462 0.00 0.00 0.00 3.01
2624 2641 2.880268 TGTCAATGTGAGTTGCCTTCTG 59.120 45.455 0.00 0.00 0.00 3.02
2627 2644 3.076621 CAATGTGAGTTGCCTTCTGCTA 58.923 45.455 0.00 0.00 42.00 3.49
2827 2853 6.886459 ACTTAGTCGTAGGTGTTTAGTCCATA 59.114 38.462 0.00 0.00 0.00 2.74
2828 2854 7.559170 ACTTAGTCGTAGGTGTTTAGTCCATAT 59.441 37.037 0.00 0.00 0.00 1.78
2829 2855 6.388435 AGTCGTAGGTGTTTAGTCCATATC 57.612 41.667 0.00 0.00 0.00 1.63
2830 2856 6.127793 AGTCGTAGGTGTTTAGTCCATATCT 58.872 40.000 0.00 0.00 0.00 1.98
2846 2872 7.610305 AGTCCATATCTTGTAATGGTTCGTTTT 59.390 33.333 1.56 0.00 42.77 2.43
3038 3064 5.319931 GCGTCAGAGAATGAAAGAATTGTC 58.680 41.667 0.00 0.00 40.43 3.18
3040 3066 6.532311 CGTCAGAGAATGAAAGAATTGTCAG 58.468 40.000 0.00 0.00 40.43 3.51
3041 3067 6.146837 CGTCAGAGAATGAAAGAATTGTCAGT 59.853 38.462 0.00 0.00 40.43 3.41
3074 3100 4.884164 GGAAAGTTAGCACATTATCTGGCT 59.116 41.667 0.00 0.00 36.04 4.75
3187 3213 1.478631 GGGCCAGATTTAGCTTTGCT 58.521 50.000 4.39 0.00 43.41 3.91
3450 3476 7.339212 TGTGATTCGAATCCAATCAAAGGTTAT 59.661 33.333 30.16 0.00 40.99 1.89
3470 3496 6.039270 GGTTATACAAACAGGCTGCATAATCA 59.961 38.462 15.89 0.00 0.00 2.57
3471 3497 7.416213 GGTTATACAAACAGGCTGCATAATCAA 60.416 37.037 15.89 0.00 0.00 2.57
3539 3565 1.744320 GAAACAAACGGGGCCTGCTT 61.744 55.000 13.63 3.01 0.00 3.91
3540 3566 0.468400 AAACAAACGGGGCCTGCTTA 60.468 50.000 13.63 0.00 0.00 3.09
3576 3602 5.404395 AGAACTAAGTCTCAGTAGGGGTTT 58.596 41.667 0.00 0.00 0.00 3.27
3593 3619 6.659824 AGGGGTTTGTAGTATGAAACTATGG 58.340 40.000 0.00 0.00 42.63 2.74
3696 3724 6.640518 TCTTCTTCTAAGTTGTTCACTGTGT 58.359 36.000 7.79 0.00 35.12 3.72
3770 3813 5.073428 GTTCTGGAAATTCCTCCTGAGTTT 58.927 41.667 13.78 0.00 42.41 2.66
3820 3863 6.873605 TCGGATATAAGTGATTATGCAACAGG 59.126 38.462 0.00 0.00 0.00 4.00
3850 3893 4.256920 CGGAGAGATGTTGTGGAAATTCT 58.743 43.478 0.00 0.00 0.00 2.40
3905 3948 0.877071 CAGTCGAAAGGCACAATGCT 59.123 50.000 0.13 0.00 44.28 3.79
4016 4059 4.640201 TCAAAACTGAAACAGGTCTGGAAG 59.360 41.667 2.87 0.00 35.51 3.46
4197 4240 4.222124 AGTGACTGTTCCAAGTTTGTCT 57.778 40.909 0.00 0.00 0.00 3.41
4228 4271 0.765510 AAGGCGACCAAGGAGAAAGT 59.234 50.000 0.00 0.00 0.00 2.66
4471 4533 3.615110 GCACTGATTTCTCCTCACTCGAA 60.615 47.826 0.00 0.00 0.00 3.71
4482 4544 2.159170 CCTCACTCGAAGAACCTCATCC 60.159 54.545 0.00 0.00 34.09 3.51
4490 4552 5.312895 TCGAAGAACCTCATCCAAATTCAA 58.687 37.500 0.00 0.00 0.00 2.69
4531 4593 5.083533 AGAGCAACAGTAGATTTCTCCTG 57.916 43.478 0.00 0.00 36.20 3.86
4547 4609 3.197664 CTGAAAGGGGGATCAAGCC 57.802 57.895 0.00 0.00 0.00 4.35
4709 4772 4.481195 TGTCAAGAACAGCCTGGC 57.519 55.556 11.65 11.65 32.81 4.85
4712 4775 1.270839 TGTCAAGAACAGCCTGGCTAC 60.271 52.381 22.90 14.47 36.40 3.58
4820 4883 9.066892 GGTGCAGAATATCTATTAACCATTTCA 57.933 33.333 0.00 0.00 0.00 2.69
4927 4990 7.796054 TCTGCTCATTTTTATAGCTTAGAGGT 58.204 34.615 0.00 0.00 37.16 3.85
4986 5053 6.073003 GGTGATCTTGAAAACTCAACTACAGG 60.073 42.308 0.00 0.00 0.00 4.00
5054 6410 3.384146 TGTGTTTGTCATCCATTTGCAGT 59.616 39.130 0.00 0.00 0.00 4.40
5150 6506 7.277539 TGTTTAACTTTCTCACAAGGCATTTTG 59.722 33.333 0.00 0.00 0.00 2.44
5180 6536 5.277683 CCGAGATTTATGCAGATGGTTTGAG 60.278 44.000 0.00 0.00 0.00 3.02
5182 6538 6.479990 CGAGATTTATGCAGATGGTTTGAGTA 59.520 38.462 0.00 0.00 0.00 2.59
5350 6707 8.044060 AGAAACAATTCTAGCGATGATTTTGA 57.956 30.769 0.00 0.00 44.11 2.69
5351 6708 8.680903 AGAAACAATTCTAGCGATGATTTTGAT 58.319 29.630 0.00 0.00 44.11 2.57
5352 6709 8.624701 AAACAATTCTAGCGATGATTTTGATG 57.375 30.769 0.00 0.00 0.00 3.07
5353 6710 6.732154 ACAATTCTAGCGATGATTTTGATGG 58.268 36.000 0.00 0.00 0.00 3.51
5354 6711 4.818534 TTCTAGCGATGATTTTGATGGC 57.181 40.909 0.00 0.00 0.00 4.40
5395 6752 7.378181 AGCAAAAGTTCTTGTTTCTCTTTCAA 58.622 30.769 0.00 0.00 0.00 2.69
5404 6761 4.847633 TGTTTCTCTTTCAAACATGAGCG 58.152 39.130 0.00 0.00 38.53 5.03
5407 6764 2.738846 TCTCTTTCAAACATGAGCGAGC 59.261 45.455 0.00 0.00 0.00 5.03
5534 6891 2.229302 AGTGAGCGAGAACAGACTAACC 59.771 50.000 0.00 0.00 0.00 2.85
5557 6914 2.158385 ACATGGTGGCCTTTAAGAACCA 60.158 45.455 10.97 10.97 44.59 3.67
5616 6973 6.471146 AGAACATTCTGAGAGCAAATAGTGT 58.529 36.000 0.00 0.00 35.89 3.55
5621 6978 5.728637 TCTGAGAGCAAATAGTGTCTGAA 57.271 39.130 0.00 0.00 0.00 3.02
5622 6979 6.291648 TCTGAGAGCAAATAGTGTCTGAAT 57.708 37.500 0.00 0.00 0.00 2.57
5623 6980 6.104665 TCTGAGAGCAAATAGTGTCTGAATG 58.895 40.000 0.00 0.00 0.00 2.67
5707 7064 5.905480 AAAAGAAGGTTTTATTGCTTGCG 57.095 34.783 0.00 0.00 0.00 4.85
5708 7065 2.946564 AGAAGGTTTTATTGCTTGCGC 58.053 42.857 0.00 0.00 0.00 6.09
5709 7066 1.992667 GAAGGTTTTATTGCTTGCGCC 59.007 47.619 4.18 0.00 34.43 6.53
5710 7067 1.256812 AGGTTTTATTGCTTGCGCCT 58.743 45.000 4.18 0.00 34.43 5.52
5711 7068 1.202348 AGGTTTTATTGCTTGCGCCTC 59.798 47.619 4.18 0.00 34.43 4.70
5712 7069 1.629013 GTTTTATTGCTTGCGCCTCC 58.371 50.000 4.18 0.00 34.43 4.30
5713 7070 0.170116 TTTTATTGCTTGCGCCTCCG 59.830 50.000 4.18 0.00 34.43 4.63
5714 7071 1.653094 TTTATTGCTTGCGCCTCCGG 61.653 55.000 4.18 0.00 34.43 5.14
5725 7082 3.793060 CCTCCGGGGCGAGATAAT 58.207 61.111 0.00 0.00 30.97 1.28
5726 7083 1.293498 CCTCCGGGGCGAGATAATG 59.707 63.158 0.00 0.00 30.97 1.90
5727 7084 1.374758 CTCCGGGGCGAGATAATGC 60.375 63.158 0.00 0.00 30.97 3.56
5728 7085 2.099652 CTCCGGGGCGAGATAATGCA 62.100 60.000 0.00 0.00 30.97 3.96
5729 7086 1.003355 CCGGGGCGAGATAATGCAT 60.003 57.895 0.00 0.00 0.00 3.96
5730 7087 0.249120 CCGGGGCGAGATAATGCATA 59.751 55.000 0.00 0.00 0.00 3.14
5731 7088 1.359848 CGGGGCGAGATAATGCATAC 58.640 55.000 0.00 0.00 0.00 2.39
5732 7089 1.066858 CGGGGCGAGATAATGCATACT 60.067 52.381 0.00 0.00 0.00 2.12
5733 7090 2.165641 CGGGGCGAGATAATGCATACTA 59.834 50.000 0.00 0.00 0.00 1.82
5734 7091 3.735208 CGGGGCGAGATAATGCATACTAG 60.735 52.174 0.00 2.13 0.00 2.57
5735 7092 3.195825 GGGGCGAGATAATGCATACTAGT 59.804 47.826 0.00 0.00 0.00 2.57
5736 7093 4.322801 GGGGCGAGATAATGCATACTAGTT 60.323 45.833 0.00 0.00 0.00 2.24
5737 7094 5.238583 GGGCGAGATAATGCATACTAGTTT 58.761 41.667 0.00 0.00 0.00 2.66
5738 7095 5.701290 GGGCGAGATAATGCATACTAGTTTT 59.299 40.000 0.00 0.00 0.00 2.43
5739 7096 6.204882 GGGCGAGATAATGCATACTAGTTTTT 59.795 38.462 0.00 0.00 0.00 1.94
5740 7097 7.386848 GGGCGAGATAATGCATACTAGTTTTTA 59.613 37.037 0.00 0.00 0.00 1.52
5741 7098 8.936864 GGCGAGATAATGCATACTAGTTTTTAT 58.063 33.333 0.00 0.00 0.00 1.40
5742 7099 9.746711 GCGAGATAATGCATACTAGTTTTTATG 57.253 33.333 0.00 0.00 0.00 1.90
5762 7119 9.832445 TTTTATGAGGTAATATCAACAGGAGTC 57.168 33.333 0.00 0.00 0.00 3.36
5763 7120 8.547481 TTATGAGGTAATATCAACAGGAGTCA 57.453 34.615 0.00 0.00 0.00 3.41
5764 7121 7.623999 ATGAGGTAATATCAACAGGAGTCAT 57.376 36.000 0.00 0.00 0.00 3.06
5765 7122 8.727100 ATGAGGTAATATCAACAGGAGTCATA 57.273 34.615 0.00 0.00 0.00 2.15
5766 7123 8.183104 TGAGGTAATATCAACAGGAGTCATAG 57.817 38.462 0.00 0.00 0.00 2.23
5767 7124 8.004801 TGAGGTAATATCAACAGGAGTCATAGA 58.995 37.037 0.00 0.00 0.00 1.98
5768 7125 8.783660 AGGTAATATCAACAGGAGTCATAGAA 57.216 34.615 0.00 0.00 0.00 2.10
5769 7126 8.643324 AGGTAATATCAACAGGAGTCATAGAAC 58.357 37.037 0.00 0.00 0.00 3.01
5770 7127 8.643324 GGTAATATCAACAGGAGTCATAGAACT 58.357 37.037 0.00 0.00 0.00 3.01
5772 7129 8.954950 AATATCAACAGGAGTCATAGAACTTG 57.045 34.615 0.00 0.00 0.00 3.16
5773 7130 4.569943 TCAACAGGAGTCATAGAACTTGC 58.430 43.478 0.00 0.00 0.00 4.01
5774 7131 3.238108 ACAGGAGTCATAGAACTTGCG 57.762 47.619 0.00 0.00 0.00 4.85
5775 7132 1.929836 CAGGAGTCATAGAACTTGCGC 59.070 52.381 0.00 0.00 0.00 6.09
5776 7133 1.827969 AGGAGTCATAGAACTTGCGCT 59.172 47.619 9.73 0.00 0.00 5.92
5777 7134 2.159170 AGGAGTCATAGAACTTGCGCTC 60.159 50.000 9.73 0.00 0.00 5.03
5778 7135 1.849219 GAGTCATAGAACTTGCGCTCG 59.151 52.381 9.73 1.27 0.00 5.03
5779 7136 1.202582 AGTCATAGAACTTGCGCTCGT 59.797 47.619 9.73 2.03 0.00 4.18
5780 7137 2.422479 AGTCATAGAACTTGCGCTCGTA 59.578 45.455 9.73 0.00 0.00 3.43
5781 7138 3.066900 AGTCATAGAACTTGCGCTCGTAT 59.933 43.478 9.73 1.04 0.00 3.06
5782 7139 3.422546 GTCATAGAACTTGCGCTCGTATC 59.577 47.826 9.73 6.38 0.00 2.24
5783 7140 2.486951 TAGAACTTGCGCTCGTATCC 57.513 50.000 9.73 0.00 0.00 2.59
5784 7141 0.525668 AGAACTTGCGCTCGTATCCG 60.526 55.000 9.73 0.00 0.00 4.18
5790 7147 2.325511 CGCTCGTATCCGCGTGTA 59.674 61.111 4.92 0.00 44.01 2.90
5791 7148 1.082300 CGCTCGTATCCGCGTGTAT 60.082 57.895 4.92 0.00 44.01 2.29
5792 7149 1.327988 CGCTCGTATCCGCGTGTATG 61.328 60.000 4.92 3.05 44.01 2.39
5793 7150 1.002250 GCTCGTATCCGCGTGTATGG 61.002 60.000 4.92 0.00 0.00 2.74
5794 7151 1.002250 CTCGTATCCGCGTGTATGGC 61.002 60.000 4.92 0.00 0.00 4.40
5795 7152 2.019951 CGTATCCGCGTGTATGGCC 61.020 63.158 4.92 0.00 0.00 5.36
5796 7153 1.666872 GTATCCGCGTGTATGGCCC 60.667 63.158 4.92 0.00 0.00 5.80
5797 7154 2.874664 TATCCGCGTGTATGGCCCC 61.875 63.158 4.92 0.00 0.00 5.80
5801 7158 4.109675 GCGTGTATGGCCCCACCT 62.110 66.667 0.00 0.00 40.22 4.00
5802 7159 2.124736 CGTGTATGGCCCCACCTG 60.125 66.667 0.00 0.00 40.22 4.00
5803 7160 2.966732 CGTGTATGGCCCCACCTGT 61.967 63.158 0.00 0.00 40.22 4.00
5804 7161 1.077716 GTGTATGGCCCCACCTGTC 60.078 63.158 0.00 0.00 40.22 3.51
5805 7162 1.540118 TGTATGGCCCCACCTGTCA 60.540 57.895 0.00 0.00 40.22 3.58
5806 7163 1.224592 GTATGGCCCCACCTGTCAG 59.775 63.158 0.00 0.00 40.22 3.51
5807 7164 1.229820 TATGGCCCCACCTGTCAGT 60.230 57.895 0.00 0.00 40.22 3.41
5808 7165 1.561769 TATGGCCCCACCTGTCAGTG 61.562 60.000 0.00 0.00 40.22 3.66
5809 7166 3.249189 GGCCCCACCTGTCAGTGA 61.249 66.667 0.00 0.00 40.34 3.41
5810 7167 2.348998 GCCCCACCTGTCAGTGAG 59.651 66.667 0.00 0.00 40.34 3.51
5811 7168 2.520536 GCCCCACCTGTCAGTGAGT 61.521 63.158 0.00 0.00 40.34 3.41
5812 7169 1.372683 CCCCACCTGTCAGTGAGTG 59.627 63.158 0.00 0.00 40.34 3.51
5813 7170 1.410850 CCCCACCTGTCAGTGAGTGT 61.411 60.000 9.42 0.00 40.34 3.55
5814 7171 0.469917 CCCACCTGTCAGTGAGTGTT 59.530 55.000 9.42 0.00 40.34 3.32
5815 7172 1.586422 CCACCTGTCAGTGAGTGTTG 58.414 55.000 9.42 0.00 40.34 3.33
5816 7173 1.138859 CCACCTGTCAGTGAGTGTTGA 59.861 52.381 9.42 0.00 40.34 3.18
5817 7174 2.224378 CCACCTGTCAGTGAGTGTTGAT 60.224 50.000 9.42 0.00 40.34 2.57
5818 7175 2.804527 CACCTGTCAGTGAGTGTTGATG 59.195 50.000 0.00 0.00 40.34 3.07
5819 7176 1.802960 CCTGTCAGTGAGTGTTGATGC 59.197 52.381 0.00 0.00 0.00 3.91
5820 7177 2.549563 CCTGTCAGTGAGTGTTGATGCT 60.550 50.000 0.00 0.00 0.00 3.79
5821 7178 3.136763 CTGTCAGTGAGTGTTGATGCTT 58.863 45.455 0.00 0.00 0.00 3.91
5822 7179 2.874086 TGTCAGTGAGTGTTGATGCTTG 59.126 45.455 0.00 0.00 0.00 4.01
5823 7180 2.225019 GTCAGTGAGTGTTGATGCTTGG 59.775 50.000 0.00 0.00 0.00 3.61
5824 7181 2.104622 TCAGTGAGTGTTGATGCTTGGA 59.895 45.455 0.00 0.00 0.00 3.53
5825 7182 3.079578 CAGTGAGTGTTGATGCTTGGAT 58.920 45.455 0.00 0.00 0.00 3.41
5826 7183 3.079578 AGTGAGTGTTGATGCTTGGATG 58.920 45.455 0.00 0.00 0.00 3.51
5827 7184 3.076621 GTGAGTGTTGATGCTTGGATGA 58.923 45.455 0.00 0.00 0.00 2.92
5828 7185 3.076621 TGAGTGTTGATGCTTGGATGAC 58.923 45.455 0.00 0.00 0.00 3.06
5829 7186 3.076621 GAGTGTTGATGCTTGGATGACA 58.923 45.455 0.00 0.00 0.00 3.58
5830 7187 2.816087 AGTGTTGATGCTTGGATGACAC 59.184 45.455 8.97 8.97 36.94 3.67
5831 7188 2.816087 GTGTTGATGCTTGGATGACACT 59.184 45.455 9.45 0.00 34.62 3.55
5832 7189 3.254166 GTGTTGATGCTTGGATGACACTT 59.746 43.478 9.45 0.00 34.62 3.16
5833 7190 3.890756 TGTTGATGCTTGGATGACACTTT 59.109 39.130 0.00 0.00 0.00 2.66
5834 7191 4.341806 TGTTGATGCTTGGATGACACTTTT 59.658 37.500 0.00 0.00 0.00 2.27
5835 7192 5.163426 TGTTGATGCTTGGATGACACTTTTT 60.163 36.000 0.00 0.00 0.00 1.94
5891 7248 3.562639 GGAAAAAGCCGACCACAAC 57.437 52.632 0.00 0.00 0.00 3.32
5892 7249 1.029681 GGAAAAAGCCGACCACAACT 58.970 50.000 0.00 0.00 0.00 3.16
5893 7250 2.223745 GGAAAAAGCCGACCACAACTA 58.776 47.619 0.00 0.00 0.00 2.24
5894 7251 2.031420 GGAAAAAGCCGACCACAACTAC 60.031 50.000 0.00 0.00 0.00 2.73
5895 7252 2.335316 AAAAGCCGACCACAACTACA 57.665 45.000 0.00 0.00 0.00 2.74
5896 7253 1.589803 AAAGCCGACCACAACTACAC 58.410 50.000 0.00 0.00 0.00 2.90
5897 7254 0.466543 AAGCCGACCACAACTACACA 59.533 50.000 0.00 0.00 0.00 3.72
5898 7255 0.685097 AGCCGACCACAACTACACAT 59.315 50.000 0.00 0.00 0.00 3.21
5899 7256 1.076332 GCCGACCACAACTACACATC 58.924 55.000 0.00 0.00 0.00 3.06
5900 7257 1.606994 GCCGACCACAACTACACATCA 60.607 52.381 0.00 0.00 0.00 3.07
5901 7258 2.935238 GCCGACCACAACTACACATCAT 60.935 50.000 0.00 0.00 0.00 2.45
5902 7259 3.334691 CCGACCACAACTACACATCATT 58.665 45.455 0.00 0.00 0.00 2.57
5903 7260 3.751175 CCGACCACAACTACACATCATTT 59.249 43.478 0.00 0.00 0.00 2.32
5904 7261 4.215399 CCGACCACAACTACACATCATTTT 59.785 41.667 0.00 0.00 0.00 1.82
5905 7262 5.278266 CCGACCACAACTACACATCATTTTT 60.278 40.000 0.00 0.00 0.00 1.94
5933 7290 4.792521 AAAAACAAACCACTGTACTGCA 57.207 36.364 0.00 0.00 0.00 4.41
5934 7291 5.337578 AAAAACAAACCACTGTACTGCAT 57.662 34.783 0.00 0.00 0.00 3.96
5935 7292 3.988379 AACAAACCACTGTACTGCATG 57.012 42.857 0.00 0.00 0.00 4.06
6017 7374 0.678684 CACATCAGCTCCATGCCACA 60.679 55.000 2.55 0.00 44.23 4.17
6063 7420 4.725790 ATTTTTGCCAAGAGTAGCCATC 57.274 40.909 0.00 0.00 0.00 3.51
6079 7436 2.317040 CCATCTCCCGAGCCTTAACTA 58.683 52.381 0.00 0.00 0.00 2.24
6083 7440 2.511218 TCTCCCGAGCCTTAACTACCTA 59.489 50.000 0.00 0.00 0.00 3.08
6087 7444 3.703052 CCCGAGCCTTAACTACCTAGAAA 59.297 47.826 0.00 0.00 0.00 2.52
6147 7506 8.162878 ACCGAACAATTATTACTCGATCTCTA 57.837 34.615 8.73 0.00 0.00 2.43
6205 7850 2.736826 CCCTTCTCTCGGCCCTTCC 61.737 68.421 0.00 0.00 0.00 3.46
6214 7859 1.523938 CGGCCCTTCCCTCGATTTC 60.524 63.158 0.00 0.00 0.00 2.17
6261 7915 2.286294 CGCAGCTATGGTTGTTCTCATC 59.714 50.000 0.00 0.00 0.00 2.92
6298 7952 4.465632 AAATACGCCAATTTTCTTCCCC 57.534 40.909 0.00 0.00 0.00 4.81
6317 7971 3.834799 GCTACAGTAGGCCGCGGT 61.835 66.667 28.70 10.76 0.00 5.68
6333 7987 2.686835 GTGGCTGGGAGCTCCTCT 60.687 66.667 31.36 0.00 41.99 3.69
6338 7992 1.958902 GCTGGGAGCTCCTCTGACAG 61.959 65.000 31.36 27.16 38.45 3.51
6428 8082 0.941463 GCCATGCATCTACGAGACGG 60.941 60.000 0.00 0.00 0.00 4.79
6431 8085 1.065551 CATGCATCTACGAGACGGTGA 59.934 52.381 0.00 0.00 0.00 4.02
6445 8099 3.648694 GTGATCCCTCACCTCCCC 58.351 66.667 0.00 0.00 45.06 4.81
6456 8110 1.218196 TCACCTCCCCTCTGTATCTCC 59.782 57.143 0.00 0.00 0.00 3.71
6464 8118 3.449737 CCCCTCTGTATCTCCGTTTTGTA 59.550 47.826 0.00 0.00 0.00 2.41
6476 8130 3.322828 TCCGTTTTGTACAAGGTAGCTCT 59.677 43.478 8.56 0.00 0.00 4.09
6481 8135 2.605257 TGTACAAGGTAGCTCTGGTGT 58.395 47.619 0.00 0.00 0.00 4.16
6482 8136 2.969950 TGTACAAGGTAGCTCTGGTGTT 59.030 45.455 2.57 0.00 0.00 3.32
6510 8164 4.279420 GGGCTATGATTCCAACCAGATTTC 59.721 45.833 0.00 0.00 0.00 2.17
6513 8167 5.277538 GCTATGATTCCAACCAGATTTCGAC 60.278 44.000 0.00 0.00 0.00 4.20
6517 8171 1.003118 TCCAACCAGATTTCGACCAGG 59.997 52.381 0.00 0.00 0.00 4.45
6520 8174 2.464459 CCAGATTTCGACCAGGCGC 61.464 63.158 0.00 0.00 0.00 6.53
6542 8196 1.550976 GGTGAGATTGGACTCCGAAGT 59.449 52.381 0.00 0.00 38.88 3.01
6561 8215 2.816087 AGTAGGCTTTCGTTGTCGTCTA 59.184 45.455 0.00 0.00 38.33 2.59
6563 8217 2.877335 AGGCTTTCGTTGTCGTCTATC 58.123 47.619 0.00 0.00 38.33 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.824595 TCGAGAAGTGTTCGGGACCA 60.825 55.000 0.00 0.00 38.54 4.02
39 40 2.839486 AGTGCAATCTTGGTCGAGAA 57.161 45.000 0.00 0.00 0.00 2.87
59 60 0.909610 TTCGCTGGAGGAGATTGGGT 60.910 55.000 0.00 0.00 0.00 4.51
60 61 0.462759 GTTCGCTGGAGGAGATTGGG 60.463 60.000 0.00 0.00 0.00 4.12
73 74 4.435436 TCGCATGGCTCGTTCGCT 62.435 61.111 0.00 0.00 0.00 4.93
82 83 3.963222 CCAGATAGCTCGCATGGC 58.037 61.111 0.00 0.00 0.00 4.40
103 104 2.423446 GATAGTGGGCAGAGCGGG 59.577 66.667 0.00 0.00 0.00 6.13
141 142 0.747255 GCCGCTAGAGATGTGGAGAA 59.253 55.000 0.00 0.00 37.26 2.87
151 152 0.319125 GGGATTTCTCGCCGCTAGAG 60.319 60.000 0.00 0.00 37.09 2.43
154 155 1.040893 TGAGGGATTTCTCGCCGCTA 61.041 55.000 0.00 0.00 36.61 4.26
155 156 2.303549 CTGAGGGATTTCTCGCCGCT 62.304 60.000 0.00 0.00 36.61 5.52
202 203 1.600636 CTTCCGGCAGCTGTTGGAA 60.601 57.895 28.56 28.56 38.13 3.53
363 367 1.751924 GTAGTTCCTGCCTGATCGACT 59.248 52.381 0.00 0.00 0.00 4.18
379 383 1.202382 GCGGCAGAATTACTCGGTAGT 60.202 52.381 0.00 0.00 39.91 2.73
382 386 1.153429 GGCGGCAGAATTACTCGGT 60.153 57.895 3.07 0.00 0.00 4.69
454 458 3.726517 GCGAGGTGCATGCGTGTT 61.727 61.111 14.09 0.00 45.45 3.32
499 503 0.585357 GCGTGCAGCTCCATATCAAG 59.415 55.000 0.00 0.00 44.04 3.02
639 643 2.282391 TGGTGCTTGCGGCTCAAT 60.282 55.556 0.00 0.00 42.39 2.57
640 644 3.286751 GTGGTGCTTGCGGCTCAA 61.287 61.111 0.00 0.00 42.39 3.02
682 686 2.095853 TCGTACGACTATTGGAACGGTC 59.904 50.000 15.28 0.00 0.00 4.79
683 687 2.083774 TCGTACGACTATTGGAACGGT 58.916 47.619 15.28 0.00 0.00 4.83
684 688 2.830772 TCGTACGACTATTGGAACGG 57.169 50.000 15.28 0.00 0.00 4.44
685 689 3.040795 CCATCGTACGACTATTGGAACG 58.959 50.000 24.76 3.64 0.00 3.95
686 690 3.067180 TCCCATCGTACGACTATTGGAAC 59.933 47.826 28.72 0.00 0.00 3.62
687 691 3.289836 TCCCATCGTACGACTATTGGAA 58.710 45.455 28.72 12.93 0.00 3.53
688 692 2.934887 TCCCATCGTACGACTATTGGA 58.065 47.619 28.72 21.71 0.00 3.53
689 693 3.720949 TTCCCATCGTACGACTATTGG 57.279 47.619 22.14 22.62 0.00 3.16
690 694 4.426416 TGTTTCCCATCGTACGACTATTG 58.574 43.478 22.14 14.68 0.00 1.90
691 695 4.400251 TCTGTTTCCCATCGTACGACTATT 59.600 41.667 22.14 0.77 0.00 1.73
692 696 3.949754 TCTGTTTCCCATCGTACGACTAT 59.050 43.478 22.14 1.21 0.00 2.12
693 697 3.127548 GTCTGTTTCCCATCGTACGACTA 59.872 47.826 22.14 3.24 0.00 2.59
694 698 2.094854 GTCTGTTTCCCATCGTACGACT 60.095 50.000 22.14 7.25 0.00 4.18
695 699 2.257034 GTCTGTTTCCCATCGTACGAC 58.743 52.381 22.14 7.10 0.00 4.34
696 700 1.203052 GGTCTGTTTCCCATCGTACGA 59.797 52.381 21.93 21.93 0.00 3.43
697 701 1.636988 GGTCTGTTTCCCATCGTACG 58.363 55.000 9.53 9.53 0.00 3.67
698 702 1.636988 CGGTCTGTTTCCCATCGTAC 58.363 55.000 0.00 0.00 0.00 3.67
699 703 0.533491 CCGGTCTGTTTCCCATCGTA 59.467 55.000 0.00 0.00 0.00 3.43
700 704 1.295423 CCGGTCTGTTTCCCATCGT 59.705 57.895 0.00 0.00 0.00 3.73
701 705 2.106683 GCCGGTCTGTTTCCCATCG 61.107 63.158 1.90 0.00 0.00 3.84
702 706 1.749258 GGCCGGTCTGTTTCCCATC 60.749 63.158 1.90 0.00 0.00 3.51
703 707 2.355115 GGCCGGTCTGTTTCCCAT 59.645 61.111 1.90 0.00 0.00 4.00
704 708 4.323477 CGGCCGGTCTGTTTCCCA 62.323 66.667 20.10 0.00 0.00 4.37
705 709 3.540367 TTCGGCCGGTCTGTTTCCC 62.540 63.158 27.83 0.00 0.00 3.97
706 710 1.574702 CTTTCGGCCGGTCTGTTTCC 61.575 60.000 27.83 0.00 0.00 3.13
707 711 0.883370 ACTTTCGGCCGGTCTGTTTC 60.883 55.000 27.83 0.00 0.00 2.78
708 712 0.464916 AACTTTCGGCCGGTCTGTTT 60.465 50.000 27.83 8.54 0.00 2.83
709 713 0.464916 AAACTTTCGGCCGGTCTGTT 60.465 50.000 27.83 20.81 0.00 3.16
710 714 0.883370 GAAACTTTCGGCCGGTCTGT 60.883 55.000 27.83 16.12 0.00 3.41
711 715 1.866925 GAAACTTTCGGCCGGTCTG 59.133 57.895 27.83 15.45 0.00 3.51
712 716 4.373771 GAAACTTTCGGCCGGTCT 57.626 55.556 27.83 0.80 0.00 3.85
721 725 2.172659 GCGCCGGTCGAAACTTTC 59.827 61.111 20.06 0.00 41.67 2.62
722 726 2.589442 TGCGCCGGTCGAAACTTT 60.589 55.556 20.06 0.00 41.67 2.66
723 727 3.343421 GTGCGCCGGTCGAAACTT 61.343 61.111 20.06 0.00 41.67 2.66
756 760 0.034896 TAATAAGGGCAGCGCTAGGC 59.965 55.000 10.99 16.98 44.05 3.93
757 761 2.770164 ATAATAAGGGCAGCGCTAGG 57.230 50.000 10.99 0.00 0.00 3.02
758 762 4.184629 CCTAATAATAAGGGCAGCGCTAG 58.815 47.826 10.99 5.98 0.00 3.42
759 763 4.202245 CCTAATAATAAGGGCAGCGCTA 57.798 45.455 10.99 0.00 0.00 4.26
760 764 3.059352 CCTAATAATAAGGGCAGCGCT 57.941 47.619 2.64 2.64 0.00 5.92
776 780 9.623000 GACTTAAAATGCTAAATCTACCCCTAA 57.377 33.333 0.00 0.00 0.00 2.69
777 781 7.929785 CGACTTAAAATGCTAAATCTACCCCTA 59.070 37.037 0.00 0.00 0.00 3.53
778 782 6.766467 CGACTTAAAATGCTAAATCTACCCCT 59.234 38.462 0.00 0.00 0.00 4.79
779 783 6.512903 GCGACTTAAAATGCTAAATCTACCCC 60.513 42.308 0.00 0.00 0.00 4.95
780 784 6.037830 TGCGACTTAAAATGCTAAATCTACCC 59.962 38.462 0.00 0.00 0.00 3.69
781 785 7.011109 TCTGCGACTTAAAATGCTAAATCTACC 59.989 37.037 0.00 0.00 0.00 3.18
782 786 7.906160 TCTGCGACTTAAAATGCTAAATCTAC 58.094 34.615 0.00 0.00 0.00 2.59
783 787 7.979537 TCTCTGCGACTTAAAATGCTAAATCTA 59.020 33.333 0.00 0.00 0.00 1.98
784 788 6.818644 TCTCTGCGACTTAAAATGCTAAATCT 59.181 34.615 0.00 0.00 0.00 2.40
788 792 5.479306 ACTCTCTGCGACTTAAAATGCTAA 58.521 37.500 0.00 0.00 0.00 3.09
848 852 3.936203 GGGGTGTGCGTGGTGAGA 61.936 66.667 0.00 0.00 0.00 3.27
1149 1158 1.520787 CGGATTGGTGCGGGTAGTC 60.521 63.158 0.00 0.00 35.34 2.59
1152 1161 3.379865 GAGCGGATTGGTGCGGGTA 62.380 63.158 0.00 0.00 39.80 3.69
1471 1480 3.810373 CGGAATTTTCCAGACGAAAGTG 58.190 45.455 9.87 0.00 46.99 3.16
1593 1605 8.993121 ACGACATGGCTATAATTTGAGAAATAG 58.007 33.333 0.00 0.00 0.00 1.73
1677 1690 1.811941 GCTGGCCACTCTTATAGCACC 60.812 57.143 0.00 0.00 0.00 5.01
1712 1725 1.332686 GTTTTCGGGAAGCAAACTCGT 59.667 47.619 0.00 0.00 34.02 4.18
1744 1757 7.282224 TGTGAGTTGTTACTATGCAAAAGTCTT 59.718 33.333 8.24 0.00 33.84 3.01
1759 1772 7.995289 ACAATCAGTTGATTTGTGAGTTGTTA 58.005 30.769 4.66 0.00 42.41 2.41
1760 1773 6.866480 ACAATCAGTTGATTTGTGAGTTGTT 58.134 32.000 4.66 0.00 42.41 2.83
1761 1774 6.455360 ACAATCAGTTGATTTGTGAGTTGT 57.545 33.333 4.66 0.00 42.41 3.32
1762 1775 9.121517 GAATACAATCAGTTGATTTGTGAGTTG 57.878 33.333 4.66 0.00 42.41 3.16
1763 1776 9.071276 AGAATACAATCAGTTGATTTGTGAGTT 57.929 29.630 4.66 5.17 42.41 3.01
1764 1777 8.509690 CAGAATACAATCAGTTGATTTGTGAGT 58.490 33.333 4.66 3.07 42.41 3.41
1765 1778 7.484007 GCAGAATACAATCAGTTGATTTGTGAG 59.516 37.037 4.66 0.00 42.41 3.51
1792 1805 1.523758 GTGAGGAGGTTGCAACGATT 58.476 50.000 22.67 11.19 0.00 3.34
1844 1857 2.094442 AGTCTGACTCTAGCTTTTCGGC 60.094 50.000 4.06 0.00 0.00 5.54
1848 1861 8.072321 TCATATTGAGTCTGACTCTAGCTTTT 57.928 34.615 31.34 15.56 45.27 2.27
2080 2093 1.139256 GGCCTAGCAGGGTTTCTACTC 59.861 57.143 0.00 0.00 35.37 2.59
2082 2095 1.205055 AGGCCTAGCAGGGTTTCTAC 58.795 55.000 1.29 0.00 35.37 2.59
2083 2096 1.966845 AAGGCCTAGCAGGGTTTCTA 58.033 50.000 5.16 0.00 35.37 2.10
2084 2097 1.076438 AAAGGCCTAGCAGGGTTTCT 58.924 50.000 5.16 0.00 35.37 2.52
2085 2098 1.819288 GAAAAGGCCTAGCAGGGTTTC 59.181 52.381 5.16 6.90 35.37 2.78
2086 2099 1.550179 GGAAAAGGCCTAGCAGGGTTT 60.550 52.381 5.16 0.00 35.37 3.27
2087 2100 0.039764 GGAAAAGGCCTAGCAGGGTT 59.960 55.000 5.16 0.00 35.37 4.11
2088 2101 1.140134 TGGAAAAGGCCTAGCAGGGT 61.140 55.000 5.16 0.00 35.37 4.34
2247 2262 5.257262 TGGTAATTGTTGCAGCTTGGTATA 58.743 37.500 1.17 0.00 0.00 1.47
2283 2298 4.796231 CGGGAGCGGGTGAACTCG 62.796 72.222 0.00 0.00 33.55 4.18
2383 2398 9.125026 AGAGCCACTCGATTCATTTTTATTTAT 57.875 29.630 0.00 0.00 35.36 1.40
2384 2399 8.506168 AGAGCCACTCGATTCATTTTTATTTA 57.494 30.769 0.00 0.00 35.36 1.40
2527 2543 4.155826 TGCTTGATAAATCCACGGTTTCTG 59.844 41.667 0.00 0.00 0.00 3.02
2571 2587 9.570488 GTATGACGAACTTAGAACTGAATTACT 57.430 33.333 0.00 0.00 0.00 2.24
2584 2600 6.667007 TGACAGATACGTATGACGAACTTA 57.333 37.500 13.97 0.00 46.05 2.24
2624 2641 5.297569 AGGTTCAATCTAAGGTCCATAGC 57.702 43.478 0.00 0.00 0.00 2.97
2627 2644 6.782494 ACAAAAAGGTTCAATCTAAGGTCCAT 59.218 34.615 0.00 0.00 0.00 3.41
2853 2879 5.642063 CGGCCGAACCATTACAAGATATATT 59.358 40.000 24.07 0.00 39.03 1.28
2854 2880 5.175859 CGGCCGAACCATTACAAGATATAT 58.824 41.667 24.07 0.00 39.03 0.86
2855 2881 4.039488 ACGGCCGAACCATTACAAGATATA 59.961 41.667 35.90 0.00 39.03 0.86
3011 3037 1.019278 TTTCATTCTCTGACGCCGGC 61.019 55.000 19.07 19.07 32.17 6.13
3038 3064 8.511321 TGTGCTAACTTTCCATATAAAACACTG 58.489 33.333 0.00 0.00 0.00 3.66
3040 3066 9.855021 AATGTGCTAACTTTCCATATAAAACAC 57.145 29.630 0.00 0.00 0.00 3.32
3050 3076 4.640201 GCCAGATAATGTGCTAACTTTCCA 59.360 41.667 0.00 0.00 0.00 3.53
3187 3213 8.862325 TTCAGATTCCAAATTCAGCTTTACTA 57.138 30.769 0.00 0.00 0.00 1.82
3284 3310 9.248291 GAAATAGCTGTTTGTTTCAGATTTCAA 57.752 29.630 13.67 0.00 36.82 2.69
3287 3313 7.648142 TCGAAATAGCTGTTTGTTTCAGATTT 58.352 30.769 13.67 0.00 35.20 2.17
3450 3476 6.528537 AATTGATTATGCAGCCTGTTTGTA 57.471 33.333 0.00 0.00 0.00 2.41
3470 3496 3.578688 GATTCGCTTCACTGGCAAAATT 58.421 40.909 0.00 0.00 0.00 1.82
3471 3497 2.094545 GGATTCGCTTCACTGGCAAAAT 60.095 45.455 0.00 0.00 0.00 1.82
3593 3619 8.779354 ACTCCATGTTATGTTCTTCTTACTTC 57.221 34.615 0.00 0.00 0.00 3.01
3701 3729 7.293073 AGATGGCCTATTGATGAAACAGTAAT 58.707 34.615 3.32 0.00 0.00 1.89
3770 3813 1.489481 ACTCAGCAGAATCCGGATCA 58.511 50.000 19.43 0.00 0.00 2.92
3820 3863 4.142816 CCACAACATCTCTCCGTTTGAATC 60.143 45.833 0.00 0.00 0.00 2.52
3850 3893 4.914983 AGCATCTGGATCAAACTCAAGAA 58.085 39.130 0.00 0.00 0.00 2.52
3905 3948 0.034186 CCTCCCATTGCAGCTTGGTA 60.034 55.000 12.37 0.00 0.00 3.25
4016 4059 6.157211 AGACCTAGCACAATACGCATAATAC 58.843 40.000 0.00 0.00 0.00 1.89
4228 4271 5.755409 TGGAGGACTAGCAAGTGAATTAA 57.245 39.130 0.00 0.00 35.56 1.40
4471 4533 4.768968 CCACTTGAATTTGGATGAGGTTCT 59.231 41.667 0.00 0.00 34.46 3.01
4482 4544 3.923017 GGACAGTCCCACTTGAATTTG 57.077 47.619 8.65 0.00 0.00 2.32
4506 4568 5.936956 AGGAGAAATCTACTGTTGCTCTTTG 59.063 40.000 0.00 0.00 35.37 2.77
4531 4593 4.686695 GGGCTTGATCCCCCTTTC 57.313 61.111 6.06 0.00 40.51 2.62
4547 4609 5.183904 CAGTTGGAAAGTGGGATTCTAAAGG 59.816 44.000 0.00 0.00 43.50 3.11
4639 4702 7.066525 TCGTTGTAAGAAAAGAAACTTGATGGT 59.933 33.333 0.00 0.00 0.00 3.55
4734 4797 8.579006 CATATTGCCATTTGTAGACCATGTAAT 58.421 33.333 0.00 0.00 0.00 1.89
4857 4920 7.167468 ACAGTTTTATTTCAAACGCATCTTCAC 59.833 33.333 0.00 0.00 40.92 3.18
4927 4990 3.221771 CACTTGGTTGGTTCTCATGGAA 58.778 45.455 0.00 0.00 0.00 3.53
4938 5001 2.878406 CAGTTGAGGTACACTTGGTTGG 59.122 50.000 0.00 0.00 0.00 3.77
4939 5002 3.312421 CACAGTTGAGGTACACTTGGTTG 59.688 47.826 0.00 0.00 0.00 3.77
4940 5003 3.541632 CACAGTTGAGGTACACTTGGTT 58.458 45.455 0.00 0.00 0.00 3.67
4941 5004 2.158813 CCACAGTTGAGGTACACTTGGT 60.159 50.000 0.00 0.00 0.00 3.67
5054 6410 7.861629 AGACAATCCTATGAATAAGAACACCA 58.138 34.615 0.00 0.00 0.00 4.17
5121 6477 6.872920 TGCCTTGTGAGAAAGTTAAACATTT 58.127 32.000 0.00 0.00 0.00 2.32
5128 6484 5.738783 GCCAAAATGCCTTGTGAGAAAGTTA 60.739 40.000 0.00 0.00 0.00 2.24
5150 6506 1.869767 CTGCATAAATCTCGGTCTGCC 59.130 52.381 0.00 0.00 0.00 4.85
5180 6536 9.691362 ATTTGTTAATGTGTGGTTGAGATTTAC 57.309 29.630 0.00 0.00 0.00 2.01
5182 6538 7.872483 GGATTTGTTAATGTGTGGTTGAGATTT 59.128 33.333 0.00 0.00 0.00 2.17
5264 6621 2.499289 ACTGTCAGACACATCAGATCCC 59.501 50.000 6.91 0.00 33.23 3.85
5339 6696 4.560035 GTGTCAAAGCCATCAAAATCATCG 59.440 41.667 0.00 0.00 0.00 3.84
5346 6703 2.100584 GTGGTGTGTCAAAGCCATCAAA 59.899 45.455 0.00 0.00 33.20 2.69
5347 6704 1.680735 GTGGTGTGTCAAAGCCATCAA 59.319 47.619 0.00 0.00 33.20 2.57
5348 6705 1.317613 GTGGTGTGTCAAAGCCATCA 58.682 50.000 0.00 0.00 33.20 3.07
5349 6706 0.238289 CGTGGTGTGTCAAAGCCATC 59.762 55.000 0.00 0.00 33.20 3.51
5350 6707 0.179032 TCGTGGTGTGTCAAAGCCAT 60.179 50.000 0.00 0.00 33.20 4.40
5351 6708 0.393132 TTCGTGGTGTGTCAAAGCCA 60.393 50.000 0.00 0.00 0.00 4.75
5352 6709 0.307760 CTTCGTGGTGTGTCAAAGCC 59.692 55.000 0.00 0.00 0.00 4.35
5353 6710 0.317020 GCTTCGTGGTGTGTCAAAGC 60.317 55.000 0.00 0.00 33.20 3.51
5354 6711 1.013596 TGCTTCGTGGTGTGTCAAAG 58.986 50.000 0.00 0.00 0.00 2.77
5395 6752 0.671781 AGCTTTCGCTCGCTCATGTT 60.672 50.000 0.00 0.00 45.15 2.71
5404 6761 0.859232 TTTGTCGACAGCTTTCGCTC 59.141 50.000 19.11 12.62 45.15 5.03
5407 6764 2.220824 TCACATTTGTCGACAGCTTTCG 59.779 45.455 19.11 16.05 40.53 3.46
5423 6780 7.726216 TCCTTAGATATTGACGAACATCACAT 58.274 34.615 0.00 0.00 0.00 3.21
5534 6891 2.107950 TCTTAAAGGCCACCATGTCG 57.892 50.000 5.01 0.00 0.00 4.35
5557 6914 3.613559 ACAAGGCCCCCATATTCTATCT 58.386 45.455 0.00 0.00 0.00 1.98
5616 6973 7.453393 ACTTCTTTTACCATCAGACATTCAGA 58.547 34.615 0.00 0.00 0.00 3.27
5684 7041 6.285790 CGCAAGCAATAAAACCTTCTTTTT 57.714 33.333 0.00 0.00 33.27 1.94
5685 7042 5.905480 CGCAAGCAATAAAACCTTCTTTT 57.095 34.783 0.00 0.00 0.00 2.27
5709 7066 1.374758 GCATTATCTCGCCCCGGAG 60.375 63.158 0.73 0.00 35.32 4.63
5710 7067 1.480212 ATGCATTATCTCGCCCCGGA 61.480 55.000 0.73 0.00 0.00 5.14
5711 7068 0.249120 TATGCATTATCTCGCCCCGG 59.751 55.000 3.54 0.00 0.00 5.73
5712 7069 1.066858 AGTATGCATTATCTCGCCCCG 60.067 52.381 3.54 0.00 0.00 5.73
5713 7070 2.770164 AGTATGCATTATCTCGCCCC 57.230 50.000 3.54 0.00 0.00 5.80
5714 7071 4.457834 ACTAGTATGCATTATCTCGCCC 57.542 45.455 3.54 0.00 0.00 6.13
5715 7072 6.787085 AAAACTAGTATGCATTATCTCGCC 57.213 37.500 3.54 0.00 0.00 5.54
5716 7073 9.746711 CATAAAAACTAGTATGCATTATCTCGC 57.253 33.333 3.54 0.00 0.00 5.03
5736 7093 9.832445 GACTCCTGTTGATATTACCTCATAAAA 57.168 33.333 0.00 0.00 0.00 1.52
5737 7094 8.988060 TGACTCCTGTTGATATTACCTCATAAA 58.012 33.333 0.00 0.00 0.00 1.40
5738 7095 8.547481 TGACTCCTGTTGATATTACCTCATAA 57.453 34.615 0.00 0.00 0.00 1.90
5739 7096 8.727100 ATGACTCCTGTTGATATTACCTCATA 57.273 34.615 0.00 0.00 0.00 2.15
5740 7097 7.623999 ATGACTCCTGTTGATATTACCTCAT 57.376 36.000 0.00 0.00 0.00 2.90
5741 7098 8.004801 TCTATGACTCCTGTTGATATTACCTCA 58.995 37.037 0.00 0.00 0.00 3.86
5742 7099 8.410673 TCTATGACTCCTGTTGATATTACCTC 57.589 38.462 0.00 0.00 0.00 3.85
5743 7100 8.643324 GTTCTATGACTCCTGTTGATATTACCT 58.357 37.037 0.00 0.00 0.00 3.08
5744 7101 8.643324 AGTTCTATGACTCCTGTTGATATTACC 58.357 37.037 0.00 0.00 0.00 2.85
5747 7104 7.497249 GCAAGTTCTATGACTCCTGTTGATATT 59.503 37.037 0.00 0.00 0.00 1.28
5748 7105 6.989169 GCAAGTTCTATGACTCCTGTTGATAT 59.011 38.462 0.00 0.00 0.00 1.63
5749 7106 6.341316 GCAAGTTCTATGACTCCTGTTGATA 58.659 40.000 0.00 0.00 0.00 2.15
5750 7107 5.181748 GCAAGTTCTATGACTCCTGTTGAT 58.818 41.667 0.00 0.00 0.00 2.57
5751 7108 4.569943 GCAAGTTCTATGACTCCTGTTGA 58.430 43.478 0.00 0.00 0.00 3.18
5752 7109 3.369147 CGCAAGTTCTATGACTCCTGTTG 59.631 47.826 0.00 0.00 0.00 3.33
5753 7110 3.589988 CGCAAGTTCTATGACTCCTGTT 58.410 45.455 0.00 0.00 0.00 3.16
5754 7111 2.675317 GCGCAAGTTCTATGACTCCTGT 60.675 50.000 0.30 0.00 41.68 4.00
5755 7112 1.929836 GCGCAAGTTCTATGACTCCTG 59.070 52.381 0.30 0.00 41.68 3.86
5756 7113 1.827969 AGCGCAAGTTCTATGACTCCT 59.172 47.619 11.47 0.00 41.68 3.69
5757 7114 2.197577 GAGCGCAAGTTCTATGACTCC 58.802 52.381 11.47 0.00 44.93 3.85
5758 7115 1.849219 CGAGCGCAAGTTCTATGACTC 59.151 52.381 11.47 0.00 46.30 3.36
5759 7116 1.202582 ACGAGCGCAAGTTCTATGACT 59.797 47.619 11.47 0.00 46.30 3.41
5760 7117 1.630148 ACGAGCGCAAGTTCTATGAC 58.370 50.000 11.47 0.00 46.30 3.06
5761 7118 3.550233 GGATACGAGCGCAAGTTCTATGA 60.550 47.826 11.47 0.00 46.30 2.15
5762 7119 2.726760 GGATACGAGCGCAAGTTCTATG 59.273 50.000 11.47 0.00 46.30 2.23
5763 7120 3.014604 GGATACGAGCGCAAGTTCTAT 57.985 47.619 11.47 0.00 46.30 1.98
5764 7121 2.486951 GGATACGAGCGCAAGTTCTA 57.513 50.000 11.47 0.00 46.30 2.10
5765 7122 3.347411 GGATACGAGCGCAAGTTCT 57.653 52.632 11.47 0.00 46.30 3.01
5778 7135 1.666872 GGGCCATACACGCGGATAC 60.667 63.158 12.47 0.00 0.00 2.24
5779 7136 2.738480 GGGCCATACACGCGGATA 59.262 61.111 12.47 1.85 0.00 2.59
5780 7137 4.250305 GGGGCCATACACGCGGAT 62.250 66.667 12.47 0.00 0.00 4.18
5784 7141 4.109675 AGGTGGGGCCATACACGC 62.110 66.667 4.39 5.11 40.61 5.34
5785 7142 2.124736 CAGGTGGGGCCATACACG 60.125 66.667 4.39 0.00 40.61 4.49
5786 7143 1.077716 GACAGGTGGGGCCATACAC 60.078 63.158 4.39 10.63 40.61 2.90
5787 7144 1.540118 TGACAGGTGGGGCCATACA 60.540 57.895 4.39 0.00 40.61 2.29
5788 7145 1.224592 CTGACAGGTGGGGCCATAC 59.775 63.158 4.39 3.37 40.61 2.39
5789 7146 1.229820 ACTGACAGGTGGGGCCATA 60.230 57.895 4.39 0.00 40.61 2.74
5790 7147 2.532715 ACTGACAGGTGGGGCCAT 60.533 61.111 4.39 0.00 40.61 4.40
5791 7148 3.569210 CACTGACAGGTGGGGCCA 61.569 66.667 4.39 0.00 40.61 5.36
5792 7149 3.249189 TCACTGACAGGTGGGGCC 61.249 66.667 7.51 0.00 37.75 5.80
5793 7150 2.348998 CTCACTGACAGGTGGGGC 59.651 66.667 7.51 0.00 37.75 5.80
5794 7151 1.372683 CACTCACTGACAGGTGGGG 59.627 63.158 7.51 0.00 41.61 4.96
5795 7152 0.469917 AACACTCACTGACAGGTGGG 59.530 55.000 7.51 5.48 42.85 4.61
5796 7153 1.138859 TCAACACTCACTGACAGGTGG 59.861 52.381 7.51 0.00 37.75 4.61
5797 7154 2.602257 TCAACACTCACTGACAGGTG 57.398 50.000 7.51 7.99 38.44 4.00
5798 7155 2.808202 GCATCAACACTCACTGACAGGT 60.808 50.000 7.51 0.00 0.00 4.00
5799 7156 1.802960 GCATCAACACTCACTGACAGG 59.197 52.381 7.51 0.00 0.00 4.00
5800 7157 2.763933 AGCATCAACACTCACTGACAG 58.236 47.619 0.00 0.00 0.00 3.51
5801 7158 2.874086 CAAGCATCAACACTCACTGACA 59.126 45.455 0.00 0.00 0.00 3.58
5802 7159 2.225019 CCAAGCATCAACACTCACTGAC 59.775 50.000 0.00 0.00 0.00 3.51
5803 7160 2.104622 TCCAAGCATCAACACTCACTGA 59.895 45.455 0.00 0.00 0.00 3.41
5804 7161 2.497138 TCCAAGCATCAACACTCACTG 58.503 47.619 0.00 0.00 0.00 3.66
5805 7162 2.936919 TCCAAGCATCAACACTCACT 57.063 45.000 0.00 0.00 0.00 3.41
5806 7163 3.076621 TCATCCAAGCATCAACACTCAC 58.923 45.455 0.00 0.00 0.00 3.51
5807 7164 3.076621 GTCATCCAAGCATCAACACTCA 58.923 45.455 0.00 0.00 0.00 3.41
5808 7165 3.076621 TGTCATCCAAGCATCAACACTC 58.923 45.455 0.00 0.00 0.00 3.51
5809 7166 2.816087 GTGTCATCCAAGCATCAACACT 59.184 45.455 0.00 0.00 34.27 3.55
5810 7167 2.816087 AGTGTCATCCAAGCATCAACAC 59.184 45.455 0.00 0.00 36.63 3.32
5811 7168 3.144657 AGTGTCATCCAAGCATCAACA 57.855 42.857 0.00 0.00 0.00 3.33
5812 7169 4.510038 AAAGTGTCATCCAAGCATCAAC 57.490 40.909 0.00 0.00 0.00 3.18
5813 7170 5.534207 AAAAAGTGTCATCCAAGCATCAA 57.466 34.783 0.00 0.00 0.00 2.57
5873 7230 1.029681 AGTTGTGGTCGGCTTTTTCC 58.970 50.000 0.00 0.00 0.00 3.13
5874 7231 2.614983 TGTAGTTGTGGTCGGCTTTTTC 59.385 45.455 0.00 0.00 0.00 2.29
5875 7232 2.356695 GTGTAGTTGTGGTCGGCTTTTT 59.643 45.455 0.00 0.00 0.00 1.94
5876 7233 1.944709 GTGTAGTTGTGGTCGGCTTTT 59.055 47.619 0.00 0.00 0.00 2.27
5877 7234 1.134340 TGTGTAGTTGTGGTCGGCTTT 60.134 47.619 0.00 0.00 0.00 3.51
5878 7235 0.466543 TGTGTAGTTGTGGTCGGCTT 59.533 50.000 0.00 0.00 0.00 4.35
5879 7236 0.685097 ATGTGTAGTTGTGGTCGGCT 59.315 50.000 0.00 0.00 0.00 5.52
5880 7237 1.076332 GATGTGTAGTTGTGGTCGGC 58.924 55.000 0.00 0.00 0.00 5.54
5881 7238 2.448926 TGATGTGTAGTTGTGGTCGG 57.551 50.000 0.00 0.00 0.00 4.79
5882 7239 5.356882 AAAATGATGTGTAGTTGTGGTCG 57.643 39.130 0.00 0.00 0.00 4.79
5912 7269 4.792521 TGCAGTACAGTGGTTTGTTTTT 57.207 36.364 0.00 0.00 32.56 1.94
5913 7270 4.400884 TCATGCAGTACAGTGGTTTGTTTT 59.599 37.500 0.00 0.00 32.56 2.43
5914 7271 3.951037 TCATGCAGTACAGTGGTTTGTTT 59.049 39.130 0.00 0.00 32.56 2.83
5915 7272 3.550820 TCATGCAGTACAGTGGTTTGTT 58.449 40.909 0.00 0.00 32.56 2.83
5916 7273 3.207265 TCATGCAGTACAGTGGTTTGT 57.793 42.857 0.00 0.00 35.09 2.83
5917 7274 4.456911 AGATTCATGCAGTACAGTGGTTTG 59.543 41.667 0.00 0.00 0.00 2.93
5918 7275 4.655963 AGATTCATGCAGTACAGTGGTTT 58.344 39.130 0.00 0.00 0.00 3.27
5919 7276 4.292186 AGATTCATGCAGTACAGTGGTT 57.708 40.909 0.00 0.00 0.00 3.67
5920 7277 3.988976 AGATTCATGCAGTACAGTGGT 57.011 42.857 0.00 0.00 0.00 4.16
5921 7278 5.178061 TGTAAGATTCATGCAGTACAGTGG 58.822 41.667 0.00 0.00 0.00 4.00
5922 7279 6.915544 ATGTAAGATTCATGCAGTACAGTG 57.084 37.500 0.00 0.00 0.00 3.66
5923 7280 7.334090 AGAATGTAAGATTCATGCAGTACAGT 58.666 34.615 0.00 0.00 0.00 3.55
5924 7281 7.783090 AGAATGTAAGATTCATGCAGTACAG 57.217 36.000 0.00 0.00 0.00 2.74
5925 7282 9.665719 TTAAGAATGTAAGATTCATGCAGTACA 57.334 29.630 0.00 0.00 0.00 2.90
5928 7285 9.453572 TTCTTAAGAATGTAAGATTCATGCAGT 57.546 29.630 13.99 0.00 39.31 4.40
5929 7286 9.932699 CTTCTTAAGAATGTAAGATTCATGCAG 57.067 33.333 18.02 0.00 39.31 4.41
5930 7287 9.453572 ACTTCTTAAGAATGTAAGATTCATGCA 57.546 29.630 18.02 0.00 39.31 3.96
5934 7291 9.507329 AGCAACTTCTTAAGAATGTAAGATTCA 57.493 29.630 18.02 0.00 39.31 2.57
5935 7292 9.980780 GAGCAACTTCTTAAGAATGTAAGATTC 57.019 33.333 18.02 11.06 39.31 2.52
6042 7399 4.347607 AGATGGCTACTCTTGGCAAAAAT 58.652 39.130 0.00 0.00 43.05 1.82
6050 7407 1.339610 CTCGGGAGATGGCTACTCTTG 59.660 57.143 10.21 5.04 38.80 3.02
6056 7413 0.187606 TAAGGCTCGGGAGATGGCTA 59.812 55.000 0.00 0.00 40.19 3.93
6063 7420 1.777941 AGGTAGTTAAGGCTCGGGAG 58.222 55.000 0.00 0.00 0.00 4.30
6116 7475 5.499652 CGAGTAATAATTGTTCGGTCGGTTG 60.500 44.000 0.00 0.00 0.00 3.77
6117 7476 4.563976 CGAGTAATAATTGTTCGGTCGGTT 59.436 41.667 0.00 0.00 0.00 4.44
6147 7506 0.324460 ACGAAGAGACGGGGAGGAAT 60.324 55.000 0.00 0.00 37.61 3.01
6205 7850 2.526120 GCGGCGAAGGAAATCGAGG 61.526 63.158 12.98 0.00 45.48 4.63
6246 7900 8.078060 TCTGAACATAGATGAGAACAACCATA 57.922 34.615 0.00 0.00 0.00 2.74
6248 7902 6.358974 TCTGAACATAGATGAGAACAACCA 57.641 37.500 0.00 0.00 0.00 3.67
6261 7915 6.038161 TGGCGTATTTTTGGATCTGAACATAG 59.962 38.462 0.00 0.00 0.00 2.23
6317 7971 2.686470 CAGAGGAGCTCCCAGCCA 60.686 66.667 29.54 0.00 43.77 4.75
6330 7984 1.142748 GACCGCCATCCTGTCAGAG 59.857 63.158 0.00 0.00 0.00 3.35
6333 7987 2.606213 TGGACCGCCATCCTGTCA 60.606 61.111 2.74 0.00 39.92 3.58
6338 7992 2.825836 CAAGCTGGACCGCCATCC 60.826 66.667 4.93 0.00 44.91 3.51
6428 8082 1.003573 AGGGGAGGTGAGGGATCAC 59.996 63.158 0.00 0.00 39.73 3.06
6431 8085 1.316266 CAGAGGGGAGGTGAGGGAT 59.684 63.158 0.00 0.00 0.00 3.85
6445 8099 5.577164 CCTTGTACAAAACGGAGATACAGAG 59.423 44.000 10.03 0.00 0.00 3.35
6456 8110 3.432252 CCAGAGCTACCTTGTACAAAACG 59.568 47.826 10.03 2.83 0.00 3.60
6464 8118 1.543429 GCAACACCAGAGCTACCTTGT 60.543 52.381 0.00 0.00 0.00 3.16
6476 8130 1.078497 CATAGCCCTCGCAACACCA 60.078 57.895 0.00 0.00 37.52 4.17
6481 8135 0.836606 TGGAATCATAGCCCTCGCAA 59.163 50.000 0.00 0.00 37.52 4.85
6482 8136 0.836606 TTGGAATCATAGCCCTCGCA 59.163 50.000 0.00 0.00 37.52 5.10
6517 8171 1.078848 AGTCCAATCTCACCAGCGC 60.079 57.895 0.00 0.00 0.00 5.92
6520 8174 1.186200 TCGGAGTCCAATCTCACCAG 58.814 55.000 10.49 0.00 36.30 4.00
6542 8196 3.693085 AGATAGACGACAACGAAAGCCTA 59.307 43.478 0.00 0.00 42.66 3.93
6576 8230 1.523758 GCGGATTTGAACCACAGTCT 58.476 50.000 0.00 0.00 0.00 3.24
6579 8233 0.953471 TCGGCGGATTTGAACCACAG 60.953 55.000 7.21 0.00 0.00 3.66
6580 8234 0.322098 ATCGGCGGATTTGAACCACA 60.322 50.000 7.21 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.