Multiple sequence alignment - TraesCS5B01G139600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G139600 chr5B 100.000 4525 0 0 1 4525 263231100 263226576 0.000000e+00 8357
1 TraesCS5B01G139600 chr5B 89.167 240 20 4 4135 4369 449204183 449204421 1.230000e-75 294
2 TraesCS5B01G139600 chr5D 96.159 2473 67 11 1657 4127 240498312 240500758 0.000000e+00 4015
3 TraesCS5B01G139600 chr5D 89.549 909 73 16 483 1382 240497404 240498299 0.000000e+00 1133
4 TraesCS5B01G139600 chr5A 97.802 1956 40 3 1647 3601 313318573 313316620 0.000000e+00 3371
5 TraesCS5B01G139600 chr5A 92.929 594 32 3 805 1390 313319162 313318571 0.000000e+00 856
6 TraesCS5B01G139600 chr5A 92.762 525 34 4 3614 4136 313316642 313316120 0.000000e+00 756
7 TraesCS5B01G139600 chr5A 92.337 261 20 0 1389 1649 386169522 386169782 5.530000e-99 372
8 TraesCS5B01G139600 chr3B 84.509 723 103 7 1 718 377706759 377707477 0.000000e+00 706
9 TraesCS5B01G139600 chr3B 79.583 720 135 10 5 716 524953309 524952594 5.220000e-139 505
10 TraesCS5B01G139600 chr6A 83.866 719 104 10 2 715 223562670 223563381 0.000000e+00 675
11 TraesCS5B01G139600 chr6A 92.337 261 20 0 1389 1649 115182558 115182298 5.530000e-99 372
12 TraesCS5B01G139600 chr3A 83.949 704 106 5 1 699 445834211 445833510 0.000000e+00 667
13 TraesCS5B01G139600 chr7B 82.645 726 108 14 4 718 196393162 196392444 1.070000e-175 627
14 TraesCS5B01G139600 chr7B 88.889 243 23 2 4132 4370 367096932 367097174 3.420000e-76 296
15 TraesCS5B01G139600 chr7B 89.407 236 21 2 4138 4369 414077416 414077181 1.230000e-75 294
16 TraesCS5B01G139600 chr6D 82.743 678 108 7 41 713 264691922 264691249 3.010000e-166 595
17 TraesCS5B01G139600 chr2A 81.743 723 112 11 2 718 718131907 718131199 1.810000e-163 586
18 TraesCS5B01G139600 chr2A 91.822 269 21 1 1389 1657 55163839 55163572 1.540000e-99 374
19 TraesCS5B01G139600 chr4A 83.987 612 87 9 2 607 627780321 627779715 1.090000e-160 577
20 TraesCS5B01G139600 chr2B 83.609 604 92 5 1 599 799314487 799315088 1.100000e-155 560
21 TraesCS5B01G139600 chr4D 96.169 261 10 0 1389 1649 426205722 426205982 1.160000e-115 427
22 TraesCS5B01G139600 chr2D 95.038 262 13 0 1388 1649 602714076 602713815 3.260000e-111 412
23 TraesCS5B01G139600 chr1A 93.511 262 15 2 1388 1649 583944742 583945001 5.490000e-104 388
24 TraesCS5B01G139600 chr3D 93.130 262 18 0 1388 1649 148400520 148400259 7.100000e-103 385
25 TraesCS5B01G139600 chr7D 92.748 262 18 1 1388 1649 134142505 134142765 1.190000e-100 377
26 TraesCS5B01G139600 chr6B 92.453 265 19 1 1389 1652 113783176 113783440 1.190000e-100 377
27 TraesCS5B01G139600 chr6B 87.843 255 25 4 4129 4379 313902242 313901990 1.230000e-75 294
28 TraesCS5B01G139600 chr1B 89.344 244 20 3 4132 4370 474461880 474461638 7.360000e-78 302
29 TraesCS5B01G139600 chr1B 87.500 256 24 6 4124 4375 401762925 401762674 5.730000e-74 289
30 TraesCS5B01G139600 chr4B 89.451 237 20 4 4135 4367 330424819 330425054 1.230000e-75 294
31 TraesCS5B01G139600 chr4B 88.430 242 24 2 4133 4370 213082666 213082425 5.730000e-74 289
32 TraesCS5B01G139600 chr4B 87.698 252 26 3 4132 4378 451195628 451195879 5.730000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G139600 chr5B 263226576 263231100 4524 True 8357 8357 100.000000 1 4525 1 chr5B.!!$R1 4524
1 TraesCS5B01G139600 chr5D 240497404 240500758 3354 False 2574 4015 92.854000 483 4127 2 chr5D.!!$F1 3644
2 TraesCS5B01G139600 chr5A 313316120 313319162 3042 True 1661 3371 94.497667 805 4136 3 chr5A.!!$R1 3331
3 TraesCS5B01G139600 chr3B 377706759 377707477 718 False 706 706 84.509000 1 718 1 chr3B.!!$F1 717
4 TraesCS5B01G139600 chr3B 524952594 524953309 715 True 505 505 79.583000 5 716 1 chr3B.!!$R1 711
5 TraesCS5B01G139600 chr6A 223562670 223563381 711 False 675 675 83.866000 2 715 1 chr6A.!!$F1 713
6 TraesCS5B01G139600 chr3A 445833510 445834211 701 True 667 667 83.949000 1 699 1 chr3A.!!$R1 698
7 TraesCS5B01G139600 chr7B 196392444 196393162 718 True 627 627 82.645000 4 718 1 chr7B.!!$R1 714
8 TraesCS5B01G139600 chr6D 264691249 264691922 673 True 595 595 82.743000 41 713 1 chr6D.!!$R1 672
9 TraesCS5B01G139600 chr2A 718131199 718131907 708 True 586 586 81.743000 2 718 1 chr2A.!!$R2 716
10 TraesCS5B01G139600 chr4A 627779715 627780321 606 True 577 577 83.987000 2 607 1 chr4A.!!$R1 605
11 TraesCS5B01G139600 chr2B 799314487 799315088 601 False 560 560 83.609000 1 599 1 chr2B.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 385 0.179045 CCGTGGATGGGGATGAAGAC 60.179 60.0 0.00 0.00 0.0 3.01 F
1299 1326 0.037975 TTAGTCAAGCGTCCGTTCCC 60.038 55.0 0.00 0.00 0.0 3.97 F
1403 1430 0.041386 GGTGTACTCCCTCCAGTCCT 59.959 60.0 2.33 0.00 0.0 3.85 F
1519 1546 0.102481 ACCGGTAGATGCGTCATGAC 59.898 55.0 16.21 16.21 0.0 3.06 F
2823 2851 0.178068 AAGATCGTTGGCTGGCGTAT 59.822 50.0 0.00 0.00 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 1527 0.102481 GTCATGACGCATCTACCGGT 59.898 55.000 13.98 13.98 0.00 5.28 R
2823 2851 1.839994 CCAATCTTGCCCTCTGAGGTA 59.160 52.381 21.70 8.26 31.93 3.08 R
3300 3328 0.741221 GGCTCATTCGCTTCCTCGTT 60.741 55.000 0.00 0.00 0.00 3.85 R
3340 3368 3.866582 GAGGGTCAGCCGATGGGG 61.867 72.222 0.00 0.00 39.58 4.96 R
4405 4440 0.096976 CCTTTAATGCGGCACTGTCG 59.903 55.000 4.03 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.218312 ACTCAATCCAAAAGATATGGGGC 58.782 43.478 0.00 0.00 38.54 5.80
43 44 6.183361 CCAAAAGATATGGGGCTTCATTCAAT 60.183 38.462 0.00 0.00 34.15 2.57
49 50 5.859205 ATGGGGCTTCATTCAATAAGAAC 57.141 39.130 0.00 0.00 39.49 3.01
62 63 8.963130 CATTCAATAAGAACGCAACAAGTTTTA 58.037 29.630 0.00 0.00 39.49 1.52
69 70 1.067693 GCAACAAGTTTTATGCCGCC 58.932 50.000 0.00 0.00 32.73 6.13
82 84 1.600916 GCCGCCCTTGAGAGTGTTT 60.601 57.895 0.00 0.00 0.00 2.83
104 106 4.436998 CCGTCCCGTGAGTGGCTC 62.437 72.222 0.00 0.00 0.00 4.70
113 115 3.695606 GAGTGGCTCAGGCGTGGA 61.696 66.667 6.56 0.00 39.81 4.02
189 197 4.491676 TCTTGTGTCCTTCGCTATTACAC 58.508 43.478 0.00 0.00 40.61 2.90
192 200 4.890088 TGTGTCCTTCGCTATTACACTTT 58.110 39.130 0.00 0.00 40.78 2.66
197 205 3.438781 CCTTCGCTATTACACTTTTGGCA 59.561 43.478 0.00 0.00 0.00 4.92
200 208 4.980590 TCGCTATTACACTTTTGGCATTG 58.019 39.130 0.00 0.00 0.00 2.82
227 235 5.233957 TGATTGTGTAGGCATTTCAATCG 57.766 39.130 15.13 0.00 43.84 3.34
230 238 4.678509 TGTGTAGGCATTTCAATCGTTC 57.321 40.909 0.00 0.00 0.00 3.95
242 250 3.334691 TCAATCGTTCGAAGCCTTCAAT 58.665 40.909 5.14 0.00 0.00 2.57
243 251 3.370978 TCAATCGTTCGAAGCCTTCAATC 59.629 43.478 5.14 0.00 0.00 2.67
244 252 2.743636 TCGTTCGAAGCCTTCAATCT 57.256 45.000 5.14 0.00 0.00 2.40
294 303 0.734889 CCATTGTTGGACGCTCATCC 59.265 55.000 0.00 0.00 46.92 3.51
303 312 1.372582 GACGCTCATCCAAGATTGCA 58.627 50.000 0.00 0.00 0.00 4.08
305 314 1.089112 CGCTCATCCAAGATTGCACA 58.911 50.000 0.00 0.00 0.00 4.57
315 324 4.644234 TCCAAGATTGCACAGAGTTCAAAA 59.356 37.500 0.00 0.00 0.00 2.44
328 337 6.071952 ACAGAGTTCAAAAATCAATATGCCGT 60.072 34.615 0.00 0.00 0.00 5.68
374 385 0.179045 CCGTGGATGGGGATGAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
516 528 1.523758 GAAGCGCCAAGAAAAGGAGA 58.476 50.000 2.29 0.00 0.00 3.71
554 567 4.526970 ACTTGGAGCTTCAAACAAAGAGA 58.473 39.130 9.20 0.00 0.00 3.10
584 597 1.758514 GGAGGCCGTCATGAGGAGA 60.759 63.158 16.84 0.00 0.00 3.71
626 639 1.533756 GCACAAACAAAGAAGCTCGCA 60.534 47.619 0.00 0.00 0.00 5.10
627 640 2.111756 CACAAACAAAGAAGCTCGCAC 58.888 47.619 0.00 0.00 0.00 5.34
642 655 4.169696 CACCCGAGGCCGCCAATA 62.170 66.667 13.15 0.00 0.00 1.90
654 667 2.614229 GCCGCCAATACCAAAACCAAAT 60.614 45.455 0.00 0.00 0.00 2.32
670 683 3.636764 ACCAAATCAAAAGAGGTGGTGAC 59.363 43.478 0.00 0.00 37.95 3.67
707 720 1.880027 GACTTGACCAACATGTCCACC 59.120 52.381 0.00 0.00 43.40 4.61
729 742 6.095440 CACCAAGAGAAAAGAGAAAAAGACCA 59.905 38.462 0.00 0.00 0.00 4.02
731 744 7.998964 ACCAAGAGAAAAGAGAAAAAGACCATA 59.001 33.333 0.00 0.00 0.00 2.74
749 762 6.715264 AGACCATAAACTTAACAGACAAAGGG 59.285 38.462 0.00 0.00 0.00 3.95
751 764 7.064229 ACCATAAACTTAACAGACAAAGGGAA 58.936 34.615 0.00 0.00 0.00 3.97
773 786 4.746535 AAAATCCAAACGGAACAAACCT 57.253 36.364 0.00 0.00 35.74 3.50
774 787 4.316205 AAATCCAAACGGAACAAACCTC 57.684 40.909 0.00 0.00 35.74 3.85
775 788 1.682740 TCCAAACGGAACAAACCTCC 58.317 50.000 0.00 0.00 0.00 4.30
784 797 4.934075 GGAACAAACCTCCGTACATTAC 57.066 45.455 0.00 0.00 0.00 1.89
785 798 3.686241 GGAACAAACCTCCGTACATTACC 59.314 47.826 0.00 0.00 0.00 2.85
786 799 3.339253 ACAAACCTCCGTACATTACCC 57.661 47.619 0.00 0.00 0.00 3.69
787 800 2.273557 CAAACCTCCGTACATTACCCG 58.726 52.381 0.00 0.00 0.00 5.28
798 817 3.992943 ACATTACCCGAGTGATTTGGA 57.007 42.857 0.00 0.00 31.06 3.53
814 833 2.502093 GACGTGACACCACCACCA 59.498 61.111 0.00 0.00 40.12 4.17
838 857 0.251916 ACATTTCCCGCGATCTTGGA 59.748 50.000 8.23 1.19 0.00 3.53
956 983 1.392534 CCCGCCCCTATAGATCCCT 59.607 63.158 0.00 0.00 0.00 4.20
970 997 0.907704 ATCCCTACACCAAGGCACGA 60.908 55.000 0.00 0.00 35.09 4.35
976 1003 1.293498 CACCAAGGCACGAGCTAGT 59.707 57.895 4.48 0.00 41.70 2.57
978 1005 1.185618 ACCAAGGCACGAGCTAGTGA 61.186 55.000 28.45 0.00 44.43 3.41
1086 1113 2.657237 CGAGACTTCCACGCCCTT 59.343 61.111 0.00 0.00 0.00 3.95
1228 1255 1.006086 TGTTCGATGTAATGCGCCAG 58.994 50.000 4.18 0.00 0.00 4.85
1299 1326 0.037975 TTAGTCAAGCGTCCGTTCCC 60.038 55.000 0.00 0.00 0.00 3.97
1313 1340 1.337823 CGTTCCCCTTCGACTGATGTT 60.338 52.381 0.00 0.00 0.00 2.71
1390 1417 9.607285 CAGTAAATGAGTTTATGTTTGGTGTAC 57.393 33.333 0.00 0.00 32.76 2.90
1391 1418 9.569122 AGTAAATGAGTTTATGTTTGGTGTACT 57.431 29.630 0.00 0.00 32.76 2.73
1392 1419 9.821662 GTAAATGAGTTTATGTTTGGTGTACTC 57.178 33.333 0.00 0.00 32.76 2.59
1393 1420 7.448748 AATGAGTTTATGTTTGGTGTACTCC 57.551 36.000 7.03 7.03 31.81 3.85
1394 1421 5.310451 TGAGTTTATGTTTGGTGTACTCCC 58.690 41.667 11.36 3.51 31.81 4.30
1395 1422 5.072600 TGAGTTTATGTTTGGTGTACTCCCT 59.927 40.000 11.36 0.00 31.81 4.20
1396 1423 5.557866 AGTTTATGTTTGGTGTACTCCCTC 58.442 41.667 11.36 3.01 0.00 4.30
1397 1424 4.563140 TTATGTTTGGTGTACTCCCTCC 57.437 45.455 11.36 0.05 0.00 4.30
1398 1425 1.809133 TGTTTGGTGTACTCCCTCCA 58.191 50.000 11.36 2.55 0.00 3.86
1399 1426 1.697432 TGTTTGGTGTACTCCCTCCAG 59.303 52.381 11.36 0.00 0.00 3.86
1400 1427 1.697982 GTTTGGTGTACTCCCTCCAGT 59.302 52.381 11.36 0.00 0.00 4.00
1401 1428 1.640917 TTGGTGTACTCCCTCCAGTC 58.359 55.000 11.36 0.00 0.00 3.51
1402 1429 0.252103 TGGTGTACTCCCTCCAGTCC 60.252 60.000 11.36 0.00 0.00 3.85
1403 1430 0.041386 GGTGTACTCCCTCCAGTCCT 59.959 60.000 2.33 0.00 0.00 3.85
1404 1431 1.552719 GGTGTACTCCCTCCAGTCCTT 60.553 57.143 2.33 0.00 0.00 3.36
1405 1432 2.258109 GTGTACTCCCTCCAGTCCTTT 58.742 52.381 0.00 0.00 0.00 3.11
1406 1433 2.638363 GTGTACTCCCTCCAGTCCTTTT 59.362 50.000 0.00 0.00 0.00 2.27
1407 1434 3.072622 GTGTACTCCCTCCAGTCCTTTTT 59.927 47.826 0.00 0.00 0.00 1.94
1408 1435 4.285260 GTGTACTCCCTCCAGTCCTTTTTA 59.715 45.833 0.00 0.00 0.00 1.52
1409 1436 4.530946 TGTACTCCCTCCAGTCCTTTTTAG 59.469 45.833 0.00 0.00 0.00 1.85
1410 1437 3.599348 ACTCCCTCCAGTCCTTTTTAGT 58.401 45.455 0.00 0.00 0.00 2.24
1411 1438 3.981375 ACTCCCTCCAGTCCTTTTTAGTT 59.019 43.478 0.00 0.00 0.00 2.24
1412 1439 4.415846 ACTCCCTCCAGTCCTTTTTAGTTT 59.584 41.667 0.00 0.00 0.00 2.66
1413 1440 4.725490 TCCCTCCAGTCCTTTTTAGTTTG 58.275 43.478 0.00 0.00 0.00 2.93
1414 1441 3.255888 CCCTCCAGTCCTTTTTAGTTTGC 59.744 47.826 0.00 0.00 0.00 3.68
1415 1442 3.888930 CCTCCAGTCCTTTTTAGTTTGCA 59.111 43.478 0.00 0.00 0.00 4.08
1416 1443 4.524328 CCTCCAGTCCTTTTTAGTTTGCAT 59.476 41.667 0.00 0.00 0.00 3.96
1417 1444 5.710099 CCTCCAGTCCTTTTTAGTTTGCATA 59.290 40.000 0.00 0.00 0.00 3.14
1418 1445 6.378280 CCTCCAGTCCTTTTTAGTTTGCATAT 59.622 38.462 0.00 0.00 0.00 1.78
1419 1446 7.556275 CCTCCAGTCCTTTTTAGTTTGCATATA 59.444 37.037 0.00 0.00 0.00 0.86
1420 1447 8.871629 TCCAGTCCTTTTTAGTTTGCATATAA 57.128 30.769 0.00 0.00 0.00 0.98
1421 1448 8.956426 TCCAGTCCTTTTTAGTTTGCATATAAG 58.044 33.333 0.00 0.00 0.00 1.73
1422 1449 8.956426 CCAGTCCTTTTTAGTTTGCATATAAGA 58.044 33.333 0.00 0.00 0.00 2.10
1434 1461 9.236006 AGTTTGCATATAAGATTTGTCTGAAGT 57.764 29.630 0.00 0.00 0.00 3.01
1435 1462 9.495754 GTTTGCATATAAGATTTGTCTGAAGTC 57.504 33.333 0.00 0.00 0.00 3.01
1436 1463 8.791327 TTGCATATAAGATTTGTCTGAAGTCA 57.209 30.769 0.00 0.00 0.00 3.41
1437 1464 8.791327 TGCATATAAGATTTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 0.00 3.18
1438 1465 8.886719 TGCATATAAGATTTGTCTGAAGTCAAG 58.113 33.333 0.00 0.00 0.00 3.02
1439 1466 7.854916 GCATATAAGATTTGTCTGAAGTCAAGC 59.145 37.037 0.00 0.00 0.00 4.01
1440 1467 6.749923 ATAAGATTTGTCTGAAGTCAAGCC 57.250 37.500 0.00 0.00 0.00 4.35
1441 1468 4.363991 AGATTTGTCTGAAGTCAAGCCT 57.636 40.909 0.00 0.00 0.00 4.58
1442 1469 4.322567 AGATTTGTCTGAAGTCAAGCCTC 58.677 43.478 0.00 0.00 0.00 4.70
1443 1470 2.154854 TTGTCTGAAGTCAAGCCTCG 57.845 50.000 0.00 0.00 0.00 4.63
1444 1471 1.040646 TGTCTGAAGTCAAGCCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
1445 1472 2.235891 TGTCTGAAGTCAAGCCTCGTA 58.764 47.619 0.00 0.00 0.00 3.43
1446 1473 2.229062 TGTCTGAAGTCAAGCCTCGTAG 59.771 50.000 0.00 0.00 0.00 3.51
1447 1474 2.488545 GTCTGAAGTCAAGCCTCGTAGA 59.511 50.000 0.00 0.00 0.00 2.59
1466 1493 8.114331 TCGTAGAGTTTGACCAGTTTTATAGA 57.886 34.615 0.00 0.00 0.00 1.98
1467 1494 8.579006 TCGTAGAGTTTGACCAGTTTTATAGAA 58.421 33.333 0.00 0.00 0.00 2.10
1468 1495 9.199982 CGTAGAGTTTGACCAGTTTTATAGAAA 57.800 33.333 0.00 0.00 0.00 2.52
1491 1518 7.826260 AAAAACTACCAACATTCACTTTGTG 57.174 32.000 0.00 0.00 34.45 3.33
1492 1519 6.767524 AAACTACCAACATTCACTTTGTGA 57.232 33.333 0.00 0.00 41.09 3.58
1504 1531 5.621197 TCACTTTGTGAAATCAATACCGG 57.379 39.130 0.00 0.00 39.78 5.28
1505 1532 5.067273 TCACTTTGTGAAATCAATACCGGT 58.933 37.500 13.98 13.98 39.78 5.28
1506 1533 6.231951 TCACTTTGTGAAATCAATACCGGTA 58.768 36.000 18.46 18.46 39.78 4.02
1507 1534 6.370442 TCACTTTGTGAAATCAATACCGGTAG 59.630 38.462 20.91 7.52 39.78 3.18
1508 1535 6.370442 CACTTTGTGAAATCAATACCGGTAGA 59.630 38.462 20.91 13.09 35.23 2.59
1509 1536 7.065803 CACTTTGTGAAATCAATACCGGTAGAT 59.934 37.037 20.91 14.84 35.23 1.98
1510 1537 6.918892 TTGTGAAATCAATACCGGTAGATG 57.081 37.500 20.91 19.97 0.00 2.90
1511 1538 4.814234 TGTGAAATCAATACCGGTAGATGC 59.186 41.667 20.91 13.30 0.00 3.91
1512 1539 4.055360 TGAAATCAATACCGGTAGATGCG 58.945 43.478 20.91 6.34 0.00 4.73
1513 1540 3.746045 AATCAATACCGGTAGATGCGT 57.254 42.857 20.91 10.39 0.00 5.24
1514 1541 2.787601 TCAATACCGGTAGATGCGTC 57.212 50.000 20.91 0.00 0.00 5.19
1515 1542 2.025898 TCAATACCGGTAGATGCGTCA 58.974 47.619 20.91 3.19 0.00 4.35
1516 1543 2.626266 TCAATACCGGTAGATGCGTCAT 59.374 45.455 20.91 0.00 0.00 3.06
1517 1544 2.724977 ATACCGGTAGATGCGTCATG 57.275 50.000 20.91 0.00 0.00 3.07
1518 1545 1.682740 TACCGGTAGATGCGTCATGA 58.317 50.000 11.16 0.00 0.00 3.07
1519 1546 0.102481 ACCGGTAGATGCGTCATGAC 59.898 55.000 16.21 16.21 0.00 3.06
1520 1547 0.385751 CCGGTAGATGCGTCATGACT 59.614 55.000 22.95 4.97 0.00 3.41
1521 1548 1.202417 CCGGTAGATGCGTCATGACTT 60.202 52.381 22.95 8.27 0.00 3.01
1522 1549 2.034179 CCGGTAGATGCGTCATGACTTA 59.966 50.000 22.95 12.20 0.00 2.24
1523 1550 3.490249 CCGGTAGATGCGTCATGACTTAA 60.490 47.826 22.95 9.11 0.00 1.85
1524 1551 4.109766 CGGTAGATGCGTCATGACTTAAA 58.890 43.478 22.95 6.68 0.00 1.52
1525 1552 4.207224 CGGTAGATGCGTCATGACTTAAAG 59.793 45.833 22.95 8.65 0.00 1.85
1526 1553 5.109903 GGTAGATGCGTCATGACTTAAAGT 58.890 41.667 22.95 6.51 0.00 2.66
1527 1554 5.581085 GGTAGATGCGTCATGACTTAAAGTT 59.419 40.000 22.95 5.95 0.00 2.66
1528 1555 6.092259 GGTAGATGCGTCATGACTTAAAGTTT 59.908 38.462 22.95 4.61 0.00 2.66
1529 1556 6.170675 AGATGCGTCATGACTTAAAGTTTC 57.829 37.500 22.95 8.71 0.00 2.78
1530 1557 5.700832 AGATGCGTCATGACTTAAAGTTTCA 59.299 36.000 22.95 7.45 0.00 2.69
1531 1558 5.940192 TGCGTCATGACTTAAAGTTTCAT 57.060 34.783 22.95 0.00 0.00 2.57
1532 1559 7.549134 AGATGCGTCATGACTTAAAGTTTCATA 59.451 33.333 22.95 0.00 0.00 2.15
1533 1560 7.609760 TGCGTCATGACTTAAAGTTTCATAT 57.390 32.000 22.95 0.00 0.00 1.78
1534 1561 8.039603 TGCGTCATGACTTAAAGTTTCATATT 57.960 30.769 22.95 0.00 0.00 1.28
1535 1562 7.962373 TGCGTCATGACTTAAAGTTTCATATTG 59.038 33.333 22.95 3.02 0.00 1.90
1536 1563 7.962918 GCGTCATGACTTAAAGTTTCATATTGT 59.037 33.333 22.95 0.00 0.00 2.71
1558 1585 8.487313 TTGTATAACTTTTGCATCGTAGATGT 57.513 30.769 11.12 0.00 45.12 3.06
1559 1586 8.487313 TGTATAACTTTTGCATCGTAGATGTT 57.513 30.769 11.12 0.60 45.12 2.71
1560 1587 8.387354 TGTATAACTTTTGCATCGTAGATGTTG 58.613 33.333 11.12 1.78 45.12 3.33
1561 1588 5.940192 AACTTTTGCATCGTAGATGTTGA 57.060 34.783 11.12 0.00 45.12 3.18
1562 1589 6.500684 AACTTTTGCATCGTAGATGTTGAT 57.499 33.333 11.12 0.00 45.12 2.57
1563 1590 7.609760 AACTTTTGCATCGTAGATGTTGATA 57.390 32.000 11.12 0.00 45.12 2.15
1564 1591 7.005062 ACTTTTGCATCGTAGATGTTGATAC 57.995 36.000 11.12 0.00 45.12 2.24
1565 1592 6.818644 ACTTTTGCATCGTAGATGTTGATACT 59.181 34.615 11.12 0.00 45.12 2.12
1566 1593 7.334421 ACTTTTGCATCGTAGATGTTGATACTT 59.666 33.333 11.12 0.00 45.12 2.24
1567 1594 7.609760 TTTGCATCGTAGATGTTGATACTTT 57.390 32.000 11.12 0.00 45.12 2.66
1568 1595 7.609760 TTGCATCGTAGATGTTGATACTTTT 57.390 32.000 11.12 0.00 45.12 2.27
1569 1596 7.609760 TGCATCGTAGATGTTGATACTTTTT 57.390 32.000 11.12 0.00 45.12 1.94
1570 1597 7.684670 TGCATCGTAGATGTTGATACTTTTTC 58.315 34.615 11.12 0.00 45.12 2.29
1571 1598 7.333174 TGCATCGTAGATGTTGATACTTTTTCA 59.667 33.333 11.12 0.00 45.12 2.69
1572 1599 8.338259 GCATCGTAGATGTTGATACTTTTTCAT 58.662 33.333 11.12 0.00 45.12 2.57
1623 1650 9.495754 GTTTGACTTCAGACAATTCTTATATGC 57.504 33.333 0.00 0.00 31.96 3.14
1624 1651 8.791327 TTGACTTCAGACAATTCTTATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
1625 1652 8.429493 TGACTTCAGACAATTCTTATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
1626 1653 8.260114 TGACTTCAGACAATTCTTATATGCAGA 58.740 33.333 0.00 0.00 0.00 4.26
1627 1654 8.659925 ACTTCAGACAATTCTTATATGCAGAG 57.340 34.615 0.00 0.00 0.00 3.35
1628 1655 8.263640 ACTTCAGACAATTCTTATATGCAGAGT 58.736 33.333 0.00 0.00 0.00 3.24
1629 1656 9.755804 CTTCAGACAATTCTTATATGCAGAGTA 57.244 33.333 0.00 0.00 0.00 2.59
1638 1665 8.732746 TTCTTATATGCAGAGTAAAAAGGACC 57.267 34.615 0.00 0.00 0.00 4.46
1639 1666 6.984474 TCTTATATGCAGAGTAAAAAGGACCG 59.016 38.462 0.00 0.00 0.00 4.79
1640 1667 2.178912 TGCAGAGTAAAAAGGACCGG 57.821 50.000 0.00 0.00 0.00 5.28
1641 1668 1.695242 TGCAGAGTAAAAAGGACCGGA 59.305 47.619 9.46 0.00 0.00 5.14
1642 1669 2.289444 TGCAGAGTAAAAAGGACCGGAG 60.289 50.000 9.46 0.00 0.00 4.63
1793 1821 1.801242 TCAGTTGAGACCTGGTTGGA 58.199 50.000 0.00 0.00 39.71 3.53
1889 1917 6.415573 ACTGTAATTAGATCACCAAACTCCC 58.584 40.000 0.00 0.00 0.00 4.30
1988 2016 5.794687 TCAACAATGAGCTACGGTATTTG 57.205 39.130 0.00 0.00 0.00 2.32
1991 2019 3.623060 ACAATGAGCTACGGTATTTGCAG 59.377 43.478 0.00 0.00 0.00 4.41
2029 2057 8.166061 AGCATGTATAAACCAGTATGATGGAAT 58.834 33.333 5.11 0.00 43.57 3.01
2108 2136 1.651987 ATTCCGTACCACAGATTGCG 58.348 50.000 0.00 0.00 0.00 4.85
2161 2189 3.032017 TGAACTAGCTCAACTCAGCAC 57.968 47.619 0.00 0.00 42.40 4.40
2545 2573 3.057734 GCTATACTAATGGACGTGTGCC 58.942 50.000 0.00 0.00 0.00 5.01
2823 2851 0.178068 AAGATCGTTGGCTGGCGTAT 59.822 50.000 0.00 0.00 0.00 3.06
2945 2973 6.561519 AGCTGGTATAAAGGTACTGATGTT 57.438 37.500 0.00 0.00 40.86 2.71
3257 3285 1.216710 CTCGAGAGCTTGTCCCCAC 59.783 63.158 6.58 0.00 0.00 4.61
3314 3342 1.745489 GGGCAACGAGGAAGCGAAT 60.745 57.895 0.00 0.00 34.83 3.34
3340 3368 3.787001 CGGGGAAGGTCAGGAGGC 61.787 72.222 0.00 0.00 0.00 4.70
3398 3426 1.600636 CAAGGCTGAACTGGCGGAA 60.601 57.895 0.00 0.00 37.59 4.30
3401 3429 1.743252 GGCTGAACTGGCGGAAGAG 60.743 63.158 0.00 0.00 0.00 2.85
3683 3711 4.357279 ACCTGCTCTGCTTGCCCC 62.357 66.667 0.00 0.00 0.00 5.80
3812 3841 2.615747 GGCCCTACTTTTCTCCTGTGTC 60.616 54.545 0.00 0.00 0.00 3.67
3825 3854 6.335471 TCTCCTGTGTCGTAAACAATTCTA 57.665 37.500 0.00 0.00 40.31 2.10
3845 3874 0.541392 CGGGGTCAATCCTCATGTGA 59.459 55.000 0.00 0.00 36.19 3.58
3846 3875 1.141657 CGGGGTCAATCCTCATGTGAT 59.858 52.381 0.00 0.00 36.19 3.06
3851 3880 1.134310 TCAATCCTCATGTGATGCGCT 60.134 47.619 9.73 0.00 0.00 5.92
3852 3881 1.002792 CAATCCTCATGTGATGCGCTG 60.003 52.381 9.73 0.00 0.00 5.18
3893 3922 1.680735 GTGCCTCGAGATCTGTGAGAT 59.319 52.381 15.71 0.00 37.73 2.75
3945 3980 1.002134 CGTCAGGGCCCAAAGACAT 60.002 57.895 29.79 7.18 0.00 3.06
4049 4084 6.073276 CGACAAGTGGTGATAGATTGTTGAAA 60.073 38.462 0.00 0.00 37.42 2.69
4133 4168 9.708092 ACAGTTATAAAGAAAGGTACAGAAGAC 57.292 33.333 0.00 0.00 0.00 3.01
4134 4169 9.930693 CAGTTATAAAGAAAGGTACAGAAGACT 57.069 33.333 0.00 0.00 0.00 3.24
4141 4176 8.667592 AAGAAAGGTACAGAAGACTATTACCT 57.332 34.615 0.00 0.00 41.84 3.08
4142 4177 8.296211 AGAAAGGTACAGAAGACTATTACCTC 57.704 38.462 0.00 0.00 40.47 3.85
4143 4178 8.117312 AGAAAGGTACAGAAGACTATTACCTCT 58.883 37.037 0.00 0.00 40.47 3.69
4144 4179 7.648039 AAGGTACAGAAGACTATTACCTCTG 57.352 40.000 0.00 2.50 40.47 3.35
4145 4180 6.733509 AGGTACAGAAGACTATTACCTCTGT 58.266 40.000 9.54 9.54 38.70 3.41
4146 4181 7.183460 AGGTACAGAAGACTATTACCTCTGTT 58.817 38.462 9.82 0.00 38.70 3.16
4147 4182 7.339976 AGGTACAGAAGACTATTACCTCTGTTC 59.660 40.741 9.82 5.89 38.70 3.18
4148 4183 7.339976 GGTACAGAAGACTATTACCTCTGTTCT 59.660 40.741 9.82 0.00 37.93 3.01
4149 4184 7.164230 ACAGAAGACTATTACCTCTGTTCTG 57.836 40.000 7.11 7.11 43.38 3.02
4150 4185 6.153680 ACAGAAGACTATTACCTCTGTTCTGG 59.846 42.308 12.08 0.00 42.50 3.86
4151 4186 6.153680 CAGAAGACTATTACCTCTGTTCTGGT 59.846 42.308 0.00 0.00 37.22 4.00
4152 4187 6.726764 AGAAGACTATTACCTCTGTTCTGGTT 59.273 38.462 0.00 0.00 37.74 3.67
4153 4188 6.936968 AGACTATTACCTCTGTTCTGGTTT 57.063 37.500 0.00 0.00 37.74 3.27
4154 4189 8.431910 AAGACTATTACCTCTGTTCTGGTTTA 57.568 34.615 0.00 0.00 37.74 2.01
4155 4190 8.611051 AGACTATTACCTCTGTTCTGGTTTAT 57.389 34.615 0.00 0.00 37.74 1.40
4156 4191 9.047947 AGACTATTACCTCTGTTCTGGTTTATT 57.952 33.333 0.00 0.00 37.74 1.40
4161 4196 6.051179 ACCTCTGTTCTGGTTTATTAGTCC 57.949 41.667 0.00 0.00 31.62 3.85
4162 4197 5.045797 ACCTCTGTTCTGGTTTATTAGTCCC 60.046 44.000 0.00 0.00 31.62 4.46
4163 4198 5.189934 CCTCTGTTCTGGTTTATTAGTCCCT 59.810 44.000 0.00 0.00 0.00 4.20
4164 4199 6.296489 CCTCTGTTCTGGTTTATTAGTCCCTT 60.296 42.308 0.00 0.00 0.00 3.95
4165 4200 7.086685 TCTGTTCTGGTTTATTAGTCCCTTT 57.913 36.000 0.00 0.00 0.00 3.11
4166 4201 7.523415 TCTGTTCTGGTTTATTAGTCCCTTTT 58.477 34.615 0.00 0.00 0.00 2.27
4167 4202 7.447238 TCTGTTCTGGTTTATTAGTCCCTTTTG 59.553 37.037 0.00 0.00 0.00 2.44
4168 4203 7.064229 TGTTCTGGTTTATTAGTCCCTTTTGT 58.936 34.615 0.00 0.00 0.00 2.83
4169 4204 8.219178 TGTTCTGGTTTATTAGTCCCTTTTGTA 58.781 33.333 0.00 0.00 0.00 2.41
4170 4205 9.070179 GTTCTGGTTTATTAGTCCCTTTTGTAA 57.930 33.333 0.00 0.00 0.00 2.41
4171 4206 9.816787 TTCTGGTTTATTAGTCCCTTTTGTAAT 57.183 29.630 0.00 0.00 0.00 1.89
4172 4207 9.816787 TCTGGTTTATTAGTCCCTTTTGTAATT 57.183 29.630 0.00 0.00 0.00 1.40
4224 4259 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
4225 4260 8.977505 ACTAACAAAATGTTAATGCATGTCAAC 58.022 29.630 0.00 6.06 41.70 3.18
4226 4261 7.783090 AACAAAATGTTAATGCATGTCAACA 57.217 28.000 18.58 18.58 39.09 3.33
4227 4262 7.783090 ACAAAATGTTAATGCATGTCAACAA 57.217 28.000 19.60 8.67 34.79 2.83
4228 4263 8.206325 ACAAAATGTTAATGCATGTCAACAAA 57.794 26.923 19.60 4.53 34.79 2.83
4229 4264 8.671921 ACAAAATGTTAATGCATGTCAACAAAA 58.328 25.926 19.60 3.99 34.79 2.44
4230 4265 9.499585 CAAAATGTTAATGCATGTCAACAAAAA 57.500 25.926 19.60 3.72 34.79 1.94
4238 4273 6.687653 TGCATGTCAACAAAAATTATGTCG 57.312 33.333 0.00 0.00 0.00 4.35
4239 4274 6.212235 TGCATGTCAACAAAAATTATGTCGT 58.788 32.000 0.00 0.00 0.00 4.34
4240 4275 6.699204 TGCATGTCAACAAAAATTATGTCGTT 59.301 30.769 0.00 0.00 0.00 3.85
4241 4276 7.003072 GCATGTCAACAAAAATTATGTCGTTG 58.997 34.615 0.00 0.00 36.05 4.10
4242 4277 7.500691 CATGTCAACAAAAATTATGTCGTTGG 58.499 34.615 0.00 0.00 35.57 3.77
4243 4278 6.796426 TGTCAACAAAAATTATGTCGTTGGA 58.204 32.000 0.00 0.00 35.57 3.53
4244 4279 7.429633 TGTCAACAAAAATTATGTCGTTGGAT 58.570 30.769 0.00 0.00 35.57 3.41
4245 4280 7.923344 TGTCAACAAAAATTATGTCGTTGGATT 59.077 29.630 0.00 0.00 35.57 3.01
4246 4281 8.424731 GTCAACAAAAATTATGTCGTTGGATTC 58.575 33.333 0.00 0.00 35.57 2.52
4247 4282 7.324856 TCAACAAAAATTATGTCGTTGGATTCG 59.675 33.333 0.00 0.00 35.57 3.34
4248 4283 6.674066 ACAAAAATTATGTCGTTGGATTCGT 58.326 32.000 0.00 0.00 0.00 3.85
4249 4284 7.808672 ACAAAAATTATGTCGTTGGATTCGTA 58.191 30.769 0.00 0.00 0.00 3.43
4250 4285 8.455682 ACAAAAATTATGTCGTTGGATTCGTAT 58.544 29.630 0.00 0.00 0.00 3.06
4251 4286 8.943925 CAAAAATTATGTCGTTGGATTCGTATC 58.056 33.333 0.00 0.00 0.00 2.24
4252 4287 8.433421 AAAATTATGTCGTTGGATTCGTATCT 57.567 30.769 1.88 0.00 0.00 1.98
4253 4288 7.408132 AATTATGTCGTTGGATTCGTATCTG 57.592 36.000 1.88 0.00 0.00 2.90
4254 4289 4.649088 ATGTCGTTGGATTCGTATCTGA 57.351 40.909 1.88 0.00 0.00 3.27
4255 4290 4.443913 TGTCGTTGGATTCGTATCTGAA 57.556 40.909 1.88 0.00 0.00 3.02
4256 4291 4.171005 TGTCGTTGGATTCGTATCTGAAC 58.829 43.478 1.88 5.08 0.00 3.18
4257 4292 4.171005 GTCGTTGGATTCGTATCTGAACA 58.829 43.478 13.60 0.00 0.00 3.18
4258 4293 4.804139 GTCGTTGGATTCGTATCTGAACAT 59.196 41.667 13.60 0.00 0.00 2.71
4259 4294 5.975344 GTCGTTGGATTCGTATCTGAACATA 59.025 40.000 13.60 3.68 0.00 2.29
4260 4295 6.142480 GTCGTTGGATTCGTATCTGAACATAG 59.858 42.308 13.60 3.43 0.00 2.23
4261 4296 5.107837 CGTTGGATTCGTATCTGAACATAGC 60.108 44.000 13.60 0.00 0.00 2.97
4262 4297 5.791336 TGGATTCGTATCTGAACATAGCT 57.209 39.130 1.88 0.00 0.00 3.32
4263 4298 6.161855 TGGATTCGTATCTGAACATAGCTT 57.838 37.500 0.00 0.00 0.00 3.74
4264 4299 6.582636 TGGATTCGTATCTGAACATAGCTTT 58.417 36.000 0.00 0.00 0.00 3.51
4265 4300 6.701841 TGGATTCGTATCTGAACATAGCTTTC 59.298 38.462 0.00 0.00 0.00 2.62
4266 4301 6.701841 GGATTCGTATCTGAACATAGCTTTCA 59.298 38.462 0.00 0.00 0.00 2.69
4267 4302 7.224753 GGATTCGTATCTGAACATAGCTTTCAA 59.775 37.037 0.00 0.00 32.61 2.69
4268 4303 8.668510 ATTCGTATCTGAACATAGCTTTCAAT 57.331 30.769 0.00 0.00 32.61 2.57
4269 4304 7.468922 TCGTATCTGAACATAGCTTTCAATG 57.531 36.000 0.00 0.00 32.61 2.82
4270 4305 7.264947 TCGTATCTGAACATAGCTTTCAATGA 58.735 34.615 0.00 0.00 32.61 2.57
4271 4306 7.928167 TCGTATCTGAACATAGCTTTCAATGAT 59.072 33.333 0.00 0.00 32.61 2.45
4272 4307 9.196552 CGTATCTGAACATAGCTTTCAATGATA 57.803 33.333 0.00 0.00 32.61 2.15
4290 4325 9.518906 TCAATGATATAATTTGTTGTGACATGC 57.481 29.630 0.00 0.00 35.29 4.06
4291 4326 9.303537 CAATGATATAATTTGTTGTGACATGCA 57.696 29.630 0.00 0.00 35.29 3.96
4298 4333 7.966246 AATTTGTTGTGACATGCATAAACAT 57.034 28.000 0.00 6.01 36.46 2.71
4299 4334 7.966246 ATTTGTTGTGACATGCATAAACATT 57.034 28.000 0.00 8.68 36.46 2.71
4300 4335 7.783090 TTTGTTGTGACATGCATAAACATTT 57.217 28.000 0.00 0.00 36.46 2.32
4301 4336 7.783090 TTGTTGTGACATGCATAAACATTTT 57.217 28.000 0.00 0.00 36.46 1.82
4302 4337 7.175073 TGTTGTGACATGCATAAACATTTTG 57.825 32.000 0.00 0.00 33.58 2.44
4303 4338 6.760298 TGTTGTGACATGCATAAACATTTTGT 59.240 30.769 0.00 0.00 33.58 2.83
4304 4339 7.279536 TGTTGTGACATGCATAAACATTTTGTT 59.720 29.630 0.00 0.00 43.41 2.83
4305 4340 8.759641 GTTGTGACATGCATAAACATTTTGTTA 58.240 29.630 0.00 0.00 40.14 2.41
4306 4341 8.518151 TGTGACATGCATAAACATTTTGTTAG 57.482 30.769 0.00 0.00 40.14 2.34
4307 4342 8.140628 TGTGACATGCATAAACATTTTGTTAGT 58.859 29.630 0.00 0.00 40.14 2.24
4308 4343 8.977505 GTGACATGCATAAACATTTTGTTAGTT 58.022 29.630 0.00 0.00 40.14 2.24
4335 4370 9.558396 AAATTTAAGATCAAAATTTGGCACAGA 57.442 25.926 21.39 0.00 42.19 3.41
4336 4371 9.729281 AATTTAAGATCAAAATTTGGCACAGAT 57.271 25.926 5.83 0.00 42.39 2.90
4337 4372 9.729281 ATTTAAGATCAAAATTTGGCACAGATT 57.271 25.926 5.83 0.00 45.38 2.40
4339 4374 9.638239 TTAAGATCAAAATTTGGCACAGATTAC 57.362 29.630 5.83 0.00 42.53 1.89
4340 4375 7.230849 AGATCAAAATTTGGCACAGATTACA 57.769 32.000 5.83 0.00 42.53 2.41
4341 4376 7.318141 AGATCAAAATTTGGCACAGATTACAG 58.682 34.615 5.83 0.00 42.53 2.74
4342 4377 6.647334 TCAAAATTTGGCACAGATTACAGA 57.353 33.333 5.83 0.00 42.53 3.41
4343 4378 7.048629 TCAAAATTTGGCACAGATTACAGAA 57.951 32.000 5.83 0.00 42.53 3.02
4344 4379 6.922957 TCAAAATTTGGCACAGATTACAGAAC 59.077 34.615 5.83 0.00 42.53 3.01
4345 4380 5.391312 AATTTGGCACAGATTACAGAACC 57.609 39.130 0.00 0.00 41.52 3.62
4346 4381 3.500448 TTGGCACAGATTACAGAACCA 57.500 42.857 0.00 0.00 42.39 3.67
4347 4382 3.500448 TGGCACAGATTACAGAACCAA 57.500 42.857 0.00 0.00 0.00 3.67
4348 4383 4.032960 TGGCACAGATTACAGAACCAAT 57.967 40.909 0.00 0.00 0.00 3.16
4349 4384 5.172687 TGGCACAGATTACAGAACCAATA 57.827 39.130 0.00 0.00 0.00 1.90
4350 4385 5.565509 TGGCACAGATTACAGAACCAATAA 58.434 37.500 0.00 0.00 0.00 1.40
4351 4386 6.007076 TGGCACAGATTACAGAACCAATAAA 58.993 36.000 0.00 0.00 0.00 1.40
4352 4387 6.072175 TGGCACAGATTACAGAACCAATAAAC 60.072 38.462 0.00 0.00 0.00 2.01
4353 4388 6.322491 GCACAGATTACAGAACCAATAAACC 58.678 40.000 0.00 0.00 0.00 3.27
4354 4389 6.072175 GCACAGATTACAGAACCAATAAACCA 60.072 38.462 0.00 0.00 0.00 3.67
4355 4390 7.530010 CACAGATTACAGAACCAATAAACCAG 58.470 38.462 0.00 0.00 0.00 4.00
4356 4391 6.659242 ACAGATTACAGAACCAATAAACCAGG 59.341 38.462 0.00 0.00 0.00 4.45
4357 4392 6.884295 CAGATTACAGAACCAATAAACCAGGA 59.116 38.462 0.00 0.00 0.00 3.86
4358 4393 6.884836 AGATTACAGAACCAATAAACCAGGAC 59.115 38.462 0.00 0.00 0.00 3.85
4359 4394 3.408634 ACAGAACCAATAAACCAGGACG 58.591 45.455 0.00 0.00 0.00 4.79
4360 4395 2.747446 CAGAACCAATAAACCAGGACGG 59.253 50.000 0.00 0.00 42.50 4.79
4361 4396 2.640826 AGAACCAATAAACCAGGACGGA 59.359 45.455 0.00 0.00 38.63 4.69
4362 4397 2.781681 ACCAATAAACCAGGACGGAG 57.218 50.000 0.00 0.00 38.63 4.63
4363 4398 1.280998 ACCAATAAACCAGGACGGAGG 59.719 52.381 0.00 0.00 38.63 4.30
4364 4399 1.280998 CCAATAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
4365 4400 2.502538 CCAATAAACCAGGACGGAGGTA 59.497 50.000 0.00 0.00 37.07 3.08
4366 4401 3.431766 CCAATAAACCAGGACGGAGGTAG 60.432 52.174 0.00 0.00 37.07 3.18
4367 4402 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
4368 4403 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
4369 4404 2.140839 AACCAGGACGGAGGTAGTAG 57.859 55.000 0.00 0.00 37.07 2.57
4370 4405 0.395448 ACCAGGACGGAGGTAGTAGC 60.395 60.000 0.00 0.00 36.07 3.58
4371 4406 0.106619 CCAGGACGGAGGTAGTAGCT 60.107 60.000 0.36 0.36 36.56 3.32
4372 4407 1.310904 CAGGACGGAGGTAGTAGCTC 58.689 60.000 19.11 19.11 41.73 4.09
4373 4408 0.179051 AGGACGGAGGTAGTAGCTCG 60.179 60.000 20.22 17.38 43.29 5.03
4374 4409 1.648174 GACGGAGGTAGTAGCTCGC 59.352 63.158 20.22 13.33 43.29 5.03
4375 4410 0.814812 GACGGAGGTAGTAGCTCGCT 60.815 60.000 20.22 9.59 43.29 4.93
4376 4411 0.467384 ACGGAGGTAGTAGCTCGCTA 59.533 55.000 20.22 0.00 43.29 4.26
4377 4412 1.149987 CGGAGGTAGTAGCTCGCTAG 58.850 60.000 20.22 9.83 43.29 3.42
4378 4413 1.540797 CGGAGGTAGTAGCTCGCTAGT 60.541 57.143 20.22 10.76 43.29 2.57
4379 4414 1.874872 GGAGGTAGTAGCTCGCTAGTG 59.125 57.143 20.22 0.00 43.29 2.74
4380 4415 2.563702 GAGGTAGTAGCTCGCTAGTGT 58.436 52.381 13.31 1.78 32.69 3.55
4381 4416 2.288458 GAGGTAGTAGCTCGCTAGTGTG 59.712 54.545 13.31 1.75 32.69 3.82
4382 4417 1.334243 GGTAGTAGCTCGCTAGTGTGG 59.666 57.143 14.81 0.00 34.39 4.17
4383 4418 2.015587 GTAGTAGCTCGCTAGTGTGGT 58.984 52.381 14.81 13.82 34.39 4.16
4384 4419 1.546961 AGTAGCTCGCTAGTGTGGTT 58.453 50.000 14.46 4.87 31.56 3.67
4385 4420 1.893801 AGTAGCTCGCTAGTGTGGTTT 59.106 47.619 14.46 2.69 31.56 3.27
4386 4421 1.993370 GTAGCTCGCTAGTGTGGTTTG 59.007 52.381 14.46 0.00 0.00 2.93
4387 4422 0.679505 AGCTCGCTAGTGTGGTTTGA 59.320 50.000 2.66 0.00 0.00 2.69
4388 4423 1.071605 GCTCGCTAGTGTGGTTTGAG 58.928 55.000 2.66 0.00 0.00 3.02
4389 4424 1.605712 GCTCGCTAGTGTGGTTTGAGT 60.606 52.381 2.66 0.00 0.00 3.41
4390 4425 2.352421 GCTCGCTAGTGTGGTTTGAGTA 60.352 50.000 2.66 0.00 0.00 2.59
4391 4426 3.502920 CTCGCTAGTGTGGTTTGAGTAG 58.497 50.000 2.66 0.00 0.00 2.57
4392 4427 2.230508 TCGCTAGTGTGGTTTGAGTAGG 59.769 50.000 2.66 0.00 0.00 3.18
4393 4428 2.230508 CGCTAGTGTGGTTTGAGTAGGA 59.769 50.000 0.00 0.00 0.00 2.94
4394 4429 3.119101 CGCTAGTGTGGTTTGAGTAGGAT 60.119 47.826 0.00 0.00 0.00 3.24
4395 4430 4.434520 GCTAGTGTGGTTTGAGTAGGATC 58.565 47.826 0.00 0.00 0.00 3.36
4396 4431 4.081642 GCTAGTGTGGTTTGAGTAGGATCA 60.082 45.833 0.00 0.00 0.00 2.92
4397 4432 5.395768 GCTAGTGTGGTTTGAGTAGGATCAT 60.396 44.000 0.00 0.00 0.00 2.45
4398 4433 4.836825 AGTGTGGTTTGAGTAGGATCATG 58.163 43.478 0.00 0.00 0.00 3.07
4399 4434 3.375299 GTGTGGTTTGAGTAGGATCATGC 59.625 47.826 0.00 0.00 0.00 4.06
4400 4435 2.945668 GTGGTTTGAGTAGGATCATGCC 59.054 50.000 0.00 0.00 0.00 4.40
4401 4436 2.213499 GGTTTGAGTAGGATCATGCCG 58.787 52.381 0.00 0.00 0.00 5.69
4402 4437 2.420129 GGTTTGAGTAGGATCATGCCGT 60.420 50.000 0.00 0.00 0.00 5.68
4403 4438 3.270877 GTTTGAGTAGGATCATGCCGTT 58.729 45.455 0.00 0.00 0.00 4.44
4404 4439 2.602257 TGAGTAGGATCATGCCGTTG 57.398 50.000 0.00 0.00 0.00 4.10
4405 4440 1.221414 GAGTAGGATCATGCCGTTGC 58.779 55.000 0.00 0.00 38.26 4.17
4406 4441 0.530650 AGTAGGATCATGCCGTTGCG 60.531 55.000 0.00 0.00 41.78 4.85
4407 4442 0.529773 GTAGGATCATGCCGTTGCGA 60.530 55.000 0.00 0.00 41.78 5.10
4408 4443 0.529773 TAGGATCATGCCGTTGCGAC 60.530 55.000 0.00 0.00 41.78 5.19
4409 4444 2.106074 GGATCATGCCGTTGCGACA 61.106 57.895 4.64 0.00 41.78 4.35
4410 4445 1.349627 GATCATGCCGTTGCGACAG 59.650 57.895 4.64 0.00 41.78 3.51
4411 4446 1.361668 GATCATGCCGTTGCGACAGT 61.362 55.000 4.64 0.00 41.78 3.55
4412 4447 1.638388 ATCATGCCGTTGCGACAGTG 61.638 55.000 4.64 0.00 41.78 3.66
4413 4448 3.726517 ATGCCGTTGCGACAGTGC 61.727 61.111 4.64 4.18 41.78 4.40
4423 4458 3.586039 CGACAGTGCCGCATTAAAG 57.414 52.632 0.00 0.00 0.00 1.85
4424 4459 0.096976 CGACAGTGCCGCATTAAAGG 59.903 55.000 0.00 0.00 0.00 3.11
4425 4460 1.165270 GACAGTGCCGCATTAAAGGT 58.835 50.000 0.00 0.00 0.00 3.50
4426 4461 2.352388 GACAGTGCCGCATTAAAGGTA 58.648 47.619 0.00 0.00 0.00 3.08
4427 4462 2.745281 GACAGTGCCGCATTAAAGGTAA 59.255 45.455 0.00 0.00 0.00 2.85
4428 4463 2.486592 ACAGTGCCGCATTAAAGGTAAC 59.513 45.455 0.00 0.00 0.00 2.50
4429 4464 2.486203 CAGTGCCGCATTAAAGGTAACA 59.514 45.455 0.00 0.00 41.41 2.41
4430 4465 2.486592 AGTGCCGCATTAAAGGTAACAC 59.513 45.455 0.00 0.00 41.41 3.32
4431 4466 1.465387 TGCCGCATTAAAGGTAACACG 59.535 47.619 0.00 0.00 41.41 4.49
4432 4467 1.465777 GCCGCATTAAAGGTAACACGT 59.534 47.619 0.00 0.00 41.41 4.49
4433 4468 2.095617 GCCGCATTAAAGGTAACACGTT 60.096 45.455 0.00 0.00 41.41 3.99
4434 4469 3.484683 CCGCATTAAAGGTAACACGTTG 58.515 45.455 0.00 0.00 41.41 4.10
4435 4470 3.186817 CCGCATTAAAGGTAACACGTTGA 59.813 43.478 0.00 0.00 41.41 3.18
4436 4471 4.319622 CCGCATTAAAGGTAACACGTTGAA 60.320 41.667 0.00 0.00 41.41 2.69
4437 4472 5.206299 CGCATTAAAGGTAACACGTTGAAA 58.794 37.500 0.00 0.00 41.41 2.69
4438 4473 5.681982 CGCATTAAAGGTAACACGTTGAAAA 59.318 36.000 0.00 0.00 41.41 2.29
4439 4474 6.196724 CGCATTAAAGGTAACACGTTGAAAAA 59.803 34.615 0.00 0.00 41.41 1.94
4440 4475 7.096394 CGCATTAAAGGTAACACGTTGAAAAAT 60.096 33.333 0.00 0.00 41.41 1.82
4441 4476 8.544597 GCATTAAAGGTAACACGTTGAAAAATT 58.455 29.630 0.00 0.00 41.41 1.82
4447 4482 9.673454 AAGGTAACACGTTGAAAAATTAAGATC 57.327 29.630 0.00 0.00 41.41 2.75
4448 4483 8.013378 AGGTAACACGTTGAAAAATTAAGATCG 58.987 33.333 0.00 0.00 41.41 3.69
4449 4484 8.011106 GGTAACACGTTGAAAAATTAAGATCGA 58.989 33.333 0.00 0.00 0.00 3.59
4450 4485 9.537848 GTAACACGTTGAAAAATTAAGATCGAT 57.462 29.630 0.00 0.00 0.00 3.59
4451 4486 8.434870 AACACGTTGAAAAATTAAGATCGATG 57.565 30.769 0.54 0.00 0.00 3.84
4452 4487 7.802738 ACACGTTGAAAAATTAAGATCGATGA 58.197 30.769 0.54 0.00 0.00 2.92
4453 4488 8.286800 ACACGTTGAAAAATTAAGATCGATGAA 58.713 29.630 0.54 0.00 0.00 2.57
4454 4489 8.779561 CACGTTGAAAAATTAAGATCGATGAAG 58.220 33.333 0.54 0.00 0.00 3.02
4455 4490 7.481798 ACGTTGAAAAATTAAGATCGATGAAGC 59.518 33.333 0.54 0.00 0.00 3.86
4456 4491 7.304284 CGTTGAAAAATTAAGATCGATGAAGCG 60.304 37.037 0.54 0.00 0.00 4.68
4457 4492 6.486248 TGAAAAATTAAGATCGATGAAGCGG 58.514 36.000 0.54 0.00 0.00 5.52
4458 4493 6.315144 TGAAAAATTAAGATCGATGAAGCGGA 59.685 34.615 0.54 0.00 0.00 5.54
4459 4494 6.677781 AAAATTAAGATCGATGAAGCGGAA 57.322 33.333 0.54 0.00 0.00 4.30
4460 4495 6.867662 AAATTAAGATCGATGAAGCGGAAT 57.132 33.333 0.54 0.00 0.00 3.01
4461 4496 7.962964 AAATTAAGATCGATGAAGCGGAATA 57.037 32.000 0.54 0.00 0.00 1.75
4462 4497 6.952935 ATTAAGATCGATGAAGCGGAATAC 57.047 37.500 0.54 0.00 0.00 1.89
4483 4518 4.251760 GATGTAGCCATCGCTCGG 57.748 61.111 0.00 0.00 43.95 4.63
4484 4519 1.364171 GATGTAGCCATCGCTCGGT 59.636 57.895 0.00 0.00 43.95 4.69
4485 4520 0.664767 GATGTAGCCATCGCTCGGTC 60.665 60.000 0.00 0.00 43.95 4.79
4486 4521 1.391933 ATGTAGCCATCGCTCGGTCA 61.392 55.000 0.00 0.00 43.95 4.02
4487 4522 1.589196 GTAGCCATCGCTCGGTCAC 60.589 63.158 0.00 0.00 43.95 3.67
4488 4523 2.782222 TAGCCATCGCTCGGTCACC 61.782 63.158 0.00 0.00 43.95 4.02
4489 4524 4.148825 GCCATCGCTCGGTCACCT 62.149 66.667 0.00 0.00 0.00 4.00
4490 4525 2.202797 CCATCGCTCGGTCACCTG 60.203 66.667 0.00 0.00 0.00 4.00
4491 4526 2.710902 CCATCGCTCGGTCACCTGA 61.711 63.158 0.00 0.00 0.00 3.86
4492 4527 1.215382 CATCGCTCGGTCACCTGAA 59.785 57.895 0.00 0.00 0.00 3.02
4493 4528 0.179100 CATCGCTCGGTCACCTGAAT 60.179 55.000 0.00 0.00 0.00 2.57
4494 4529 0.537188 ATCGCTCGGTCACCTGAATT 59.463 50.000 0.00 0.00 0.00 2.17
4495 4530 0.108804 TCGCTCGGTCACCTGAATTC 60.109 55.000 0.00 0.00 0.00 2.17
4496 4531 0.389817 CGCTCGGTCACCTGAATTCA 60.390 55.000 8.12 8.12 0.00 2.57
4497 4532 1.740380 CGCTCGGTCACCTGAATTCAT 60.740 52.381 8.96 0.00 0.00 2.57
4498 4533 2.481276 CGCTCGGTCACCTGAATTCATA 60.481 50.000 8.96 0.00 0.00 2.15
4499 4534 3.531538 GCTCGGTCACCTGAATTCATAA 58.468 45.455 8.96 0.00 0.00 1.90
4500 4535 3.938963 GCTCGGTCACCTGAATTCATAAA 59.061 43.478 8.96 0.00 0.00 1.40
4501 4536 4.394920 GCTCGGTCACCTGAATTCATAAAA 59.605 41.667 8.96 0.00 0.00 1.52
4502 4537 5.106317 GCTCGGTCACCTGAATTCATAAAAA 60.106 40.000 8.96 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.857964 ACTTGTTGCGTTCTTATTGAATGAAG 59.142 34.615 2.25 0.00 42.68 3.02
43 44 5.216648 GGCATAAAACTTGTTGCGTTCTTA 58.783 37.500 0.00 0.00 35.95 2.10
49 50 0.707822 GCGGCATAAAACTTGTTGCG 59.292 50.000 0.00 0.00 35.95 4.85
62 63 2.129555 AACACTCTCAAGGGCGGCAT 62.130 55.000 12.47 0.00 0.00 4.40
69 70 3.473625 ACGGGTTTAAACACTCTCAAGG 58.526 45.455 18.11 3.70 0.00 3.61
103 105 2.338620 CAAGTCGTCCACGCCTGA 59.661 61.111 0.00 0.00 39.60 3.86
104 106 2.709125 TTCCAAGTCGTCCACGCCTG 62.709 60.000 0.00 0.00 39.60 4.85
113 115 2.028020 GGAAGAGGTCATTCCAAGTCGT 60.028 50.000 0.00 0.00 44.74 4.34
122 124 5.709164 CACAATGAAAGAGGAAGAGGTCATT 59.291 40.000 0.00 0.00 36.42 2.57
189 197 5.524646 ACACAATCAAAGACAATGCCAAAAG 59.475 36.000 0.00 0.00 0.00 2.27
192 200 4.669206 ACACAATCAAAGACAATGCCAA 57.331 36.364 0.00 0.00 0.00 4.52
197 205 6.594788 AATGCCTACACAATCAAAGACAAT 57.405 33.333 0.00 0.00 0.00 2.71
200 208 6.012658 TGAAATGCCTACACAATCAAAGAC 57.987 37.500 0.00 0.00 0.00 3.01
227 235 2.600867 CGAGAGATTGAAGGCTTCGAAC 59.399 50.000 20.57 17.61 0.00 3.95
230 238 0.926846 GCGAGAGATTGAAGGCTTCG 59.073 55.000 21.42 9.49 0.00 3.79
242 250 2.233676 TGGCTTGTTCTTATGCGAGAGA 59.766 45.455 0.00 0.00 0.00 3.10
243 251 2.621338 TGGCTTGTTCTTATGCGAGAG 58.379 47.619 0.00 0.00 0.00 3.20
244 252 2.760634 TGGCTTGTTCTTATGCGAGA 57.239 45.000 0.00 0.00 0.00 4.04
294 303 6.698329 TGATTTTTGAACTCTGTGCAATCTTG 59.302 34.615 0.00 0.00 30.44 3.02
303 312 6.071952 ACGGCATATTGATTTTTGAACTCTGT 60.072 34.615 0.00 0.00 0.00 3.41
305 314 6.515272 ACGGCATATTGATTTTTGAACTCT 57.485 33.333 0.00 0.00 0.00 3.24
315 324 8.506168 TTCTTCTTTAGAACGGCATATTGATT 57.494 30.769 0.00 0.00 37.96 2.57
328 337 3.307480 CGGCCCTCCTTTCTTCTTTAGAA 60.307 47.826 0.00 0.00 41.11 2.10
361 372 1.307866 ACCCCGTCTTCATCCCCAT 60.308 57.895 0.00 0.00 0.00 4.00
374 385 4.148825 CTCGGCCTCTTCACCCCG 62.149 72.222 0.00 0.00 41.97 5.73
398 409 4.058124 TCTCGACAATCTTTGAGTTGGTG 58.942 43.478 0.00 0.00 0.00 4.17
443 454 2.545742 GCCGTGCAAAGTTTCTTCCAAT 60.546 45.455 0.00 0.00 0.00 3.16
447 458 2.053627 CATGCCGTGCAAAGTTTCTTC 58.946 47.619 2.68 0.00 43.62 2.87
516 528 7.059156 AGCTCCAAGTATATCTTCATTTGCTT 58.941 34.615 0.00 0.00 33.63 3.91
554 567 1.628846 ACGGCCTCCTTCATGTAAAGT 59.371 47.619 0.00 0.00 0.00 2.66
577 590 1.107114 GATGTCGAGCCTTCTCCTCA 58.893 55.000 0.00 0.00 35.94 3.86
626 639 4.171103 GTATTGGCGGCCTCGGGT 62.171 66.667 21.46 4.15 36.79 5.28
627 640 4.929707 GGTATTGGCGGCCTCGGG 62.930 72.222 21.46 0.00 36.79 5.14
642 655 5.427378 CACCTCTTTTGATTTGGTTTTGGT 58.573 37.500 0.00 0.00 0.00 3.67
654 667 1.211703 TGCTGTCACCACCTCTTTTGA 59.788 47.619 0.00 0.00 0.00 2.69
670 683 0.729116 GTCCACGGTCATGATTGCTG 59.271 55.000 0.00 0.00 0.00 4.41
705 718 6.187682 TGGTCTTTTTCTCTTTTCTCTTGGT 58.812 36.000 0.00 0.00 0.00 3.67
751 764 5.092554 AGGTTTGTTCCGTTTGGATTTTT 57.907 34.783 0.00 0.00 45.91 1.94
763 776 3.686241 GGTAATGTACGGAGGTTTGTTCC 59.314 47.826 0.00 0.00 0.00 3.62
764 777 3.686241 GGGTAATGTACGGAGGTTTGTTC 59.314 47.826 0.00 0.00 0.00 3.18
768 781 2.167075 CTCGGGTAATGTACGGAGGTTT 59.833 50.000 0.00 0.00 0.00 3.27
769 782 1.753073 CTCGGGTAATGTACGGAGGTT 59.247 52.381 0.00 0.00 0.00 3.50
770 783 1.341383 ACTCGGGTAATGTACGGAGGT 60.341 52.381 0.00 0.00 35.50 3.85
773 786 2.127271 TCACTCGGGTAATGTACGGA 57.873 50.000 0.00 0.00 0.00 4.69
774 787 3.447918 AATCACTCGGGTAATGTACGG 57.552 47.619 0.00 0.00 0.00 4.02
775 788 3.554324 CCAAATCACTCGGGTAATGTACG 59.446 47.826 0.00 0.00 0.00 3.67
776 789 4.569564 GTCCAAATCACTCGGGTAATGTAC 59.430 45.833 0.00 0.00 0.00 2.90
778 791 3.606687 GTCCAAATCACTCGGGTAATGT 58.393 45.455 0.00 0.00 0.00 2.71
779 792 2.607635 CGTCCAAATCACTCGGGTAATG 59.392 50.000 0.00 0.00 0.00 1.90
781 794 1.619827 ACGTCCAAATCACTCGGGTAA 59.380 47.619 0.00 0.00 0.00 2.85
782 795 1.067425 CACGTCCAAATCACTCGGGTA 60.067 52.381 0.00 0.00 0.00 3.69
783 796 0.320421 CACGTCCAAATCACTCGGGT 60.320 55.000 0.00 0.00 0.00 5.28
784 797 0.037697 TCACGTCCAAATCACTCGGG 60.038 55.000 0.00 0.00 0.00 5.14
785 798 1.068474 GTCACGTCCAAATCACTCGG 58.932 55.000 0.00 0.00 0.00 4.63
786 799 1.455786 GTGTCACGTCCAAATCACTCG 59.544 52.381 0.00 0.00 0.00 4.18
787 800 1.798813 GGTGTCACGTCCAAATCACTC 59.201 52.381 0.00 0.00 0.00 3.51
798 817 2.188469 GTGGTGGTGGTGTCACGT 59.812 61.111 0.00 0.00 44.50 4.49
814 833 0.725117 GATCGCGGGAAATGTTTCGT 59.275 50.000 6.13 0.00 38.06 3.85
946 973 3.901844 GTGCCTTGGTGTAGGGATCTATA 59.098 47.826 0.00 0.00 37.98 1.31
956 983 0.530744 CTAGCTCGTGCCTTGGTGTA 59.469 55.000 5.73 0.00 40.80 2.90
970 997 2.930950 CAGCTCCTCTAGTCACTAGCT 58.069 52.381 7.01 0.00 40.79 3.32
976 1003 0.322546 TCGTGCAGCTCCTCTAGTCA 60.323 55.000 0.00 0.00 0.00 3.41
978 1005 1.028905 GATCGTGCAGCTCCTCTAGT 58.971 55.000 0.00 0.00 0.00 2.57
1086 1113 2.267642 CCGGAGATGGCGGTGAAA 59.732 61.111 0.00 0.00 0.00 2.69
1141 1168 2.411290 GGAGAAGAGGAGCGAGCG 59.589 66.667 0.00 0.00 0.00 5.03
1228 1255 1.162698 GGGTGACTAAAAGTTCCCGC 58.837 55.000 5.82 0.00 34.69 6.13
1299 1326 4.552166 ACAAAACAACATCAGTCGAAGG 57.448 40.909 0.00 0.00 0.00 3.46
1313 1340 5.935789 GGGCTACATCAGTAACTACAAAACA 59.064 40.000 0.00 0.00 0.00 2.83
1390 1417 4.642466 AACTAAAAAGGACTGGAGGGAG 57.358 45.455 0.00 0.00 0.00 4.30
1391 1418 4.725490 CAAACTAAAAAGGACTGGAGGGA 58.275 43.478 0.00 0.00 0.00 4.20
1392 1419 3.255888 GCAAACTAAAAAGGACTGGAGGG 59.744 47.826 0.00 0.00 0.00 4.30
1393 1420 3.888930 TGCAAACTAAAAAGGACTGGAGG 59.111 43.478 0.00 0.00 0.00 4.30
1394 1421 5.712152 ATGCAAACTAAAAAGGACTGGAG 57.288 39.130 0.00 0.00 0.00 3.86
1395 1422 8.871629 TTATATGCAAACTAAAAAGGACTGGA 57.128 30.769 0.00 0.00 0.00 3.86
1396 1423 8.956426 TCTTATATGCAAACTAAAAAGGACTGG 58.044 33.333 0.00 0.00 0.00 4.00
1408 1435 9.236006 ACTTCAGACAAATCTTATATGCAAACT 57.764 29.630 0.00 0.00 30.42 2.66
1409 1436 9.495754 GACTTCAGACAAATCTTATATGCAAAC 57.504 33.333 0.00 0.00 30.42 2.93
1410 1437 9.230122 TGACTTCAGACAAATCTTATATGCAAA 57.770 29.630 0.00 0.00 30.42 3.68
1411 1438 8.791327 TGACTTCAGACAAATCTTATATGCAA 57.209 30.769 0.00 0.00 30.42 4.08
1412 1439 8.791327 TTGACTTCAGACAAATCTTATATGCA 57.209 30.769 0.00 0.00 30.42 3.96
1413 1440 7.854916 GCTTGACTTCAGACAAATCTTATATGC 59.145 37.037 0.00 0.00 30.42 3.14
1414 1441 8.341173 GGCTTGACTTCAGACAAATCTTATATG 58.659 37.037 0.00 0.00 30.42 1.78
1415 1442 8.270744 AGGCTTGACTTCAGACAAATCTTATAT 58.729 33.333 0.00 0.00 30.42 0.86
1416 1443 7.624549 AGGCTTGACTTCAGACAAATCTTATA 58.375 34.615 0.00 0.00 30.42 0.98
1417 1444 6.479884 AGGCTTGACTTCAGACAAATCTTAT 58.520 36.000 0.00 0.00 30.42 1.73
1418 1445 5.869579 AGGCTTGACTTCAGACAAATCTTA 58.130 37.500 0.00 0.00 30.42 2.10
1419 1446 4.723309 AGGCTTGACTTCAGACAAATCTT 58.277 39.130 0.00 0.00 30.42 2.40
1420 1447 4.322567 GAGGCTTGACTTCAGACAAATCT 58.677 43.478 0.00 0.00 34.57 2.40
1421 1448 3.124297 CGAGGCTTGACTTCAGACAAATC 59.876 47.826 0.00 0.00 30.22 2.17
1422 1449 3.070018 CGAGGCTTGACTTCAGACAAAT 58.930 45.455 0.00 0.00 30.22 2.32
1423 1450 2.158957 ACGAGGCTTGACTTCAGACAAA 60.159 45.455 9.20 0.00 30.22 2.83
1424 1451 1.412710 ACGAGGCTTGACTTCAGACAA 59.587 47.619 9.20 0.00 0.00 3.18
1425 1452 1.040646 ACGAGGCTTGACTTCAGACA 58.959 50.000 9.20 0.00 0.00 3.41
1426 1453 2.488545 TCTACGAGGCTTGACTTCAGAC 59.511 50.000 9.20 0.00 0.00 3.51
1427 1454 2.750166 CTCTACGAGGCTTGACTTCAGA 59.250 50.000 9.20 2.32 0.00 3.27
1428 1455 2.490115 ACTCTACGAGGCTTGACTTCAG 59.510 50.000 9.20 0.00 33.35 3.02
1429 1456 2.515854 ACTCTACGAGGCTTGACTTCA 58.484 47.619 9.20 0.00 33.35 3.02
1430 1457 3.579335 AACTCTACGAGGCTTGACTTC 57.421 47.619 9.20 0.00 33.35 3.01
1431 1458 3.321111 TCAAACTCTACGAGGCTTGACTT 59.679 43.478 9.20 0.00 33.69 3.01
1432 1459 2.891580 TCAAACTCTACGAGGCTTGACT 59.108 45.455 9.20 0.00 33.69 3.41
1433 1460 2.987821 GTCAAACTCTACGAGGCTTGAC 59.012 50.000 9.20 17.50 42.91 3.18
1434 1461 2.029290 GGTCAAACTCTACGAGGCTTGA 60.029 50.000 9.20 6.58 35.10 3.02
1435 1462 2.288825 TGGTCAAACTCTACGAGGCTTG 60.289 50.000 0.00 0.00 33.35 4.01
1436 1463 1.968493 TGGTCAAACTCTACGAGGCTT 59.032 47.619 0.00 0.00 33.35 4.35
1437 1464 1.546476 CTGGTCAAACTCTACGAGGCT 59.454 52.381 0.00 0.00 33.35 4.58
1438 1465 1.272769 ACTGGTCAAACTCTACGAGGC 59.727 52.381 0.00 0.00 33.35 4.70
1439 1466 3.662247 AACTGGTCAAACTCTACGAGG 57.338 47.619 0.00 0.00 33.35 4.63
1440 1467 8.242053 TCTATAAAACTGGTCAAACTCTACGAG 58.758 37.037 0.00 0.00 35.52 4.18
1441 1468 8.114331 TCTATAAAACTGGTCAAACTCTACGA 57.886 34.615 0.00 0.00 0.00 3.43
1442 1469 8.752766 TTCTATAAAACTGGTCAAACTCTACG 57.247 34.615 0.00 0.00 0.00 3.51
1467 1494 7.607250 TCACAAAGTGAATGTTGGTAGTTTTT 58.393 30.769 0.00 0.00 39.78 1.94
1468 1495 7.164230 TCACAAAGTGAATGTTGGTAGTTTT 57.836 32.000 0.00 0.00 39.78 2.43
1469 1496 6.767524 TCACAAAGTGAATGTTGGTAGTTT 57.232 33.333 0.00 0.00 39.78 2.66
1470 1497 6.767524 TTCACAAAGTGAATGTTGGTAGTT 57.232 33.333 8.39 0.00 45.88 2.24
1482 1509 5.067273 ACCGGTATTGATTTCACAAAGTGA 58.933 37.500 4.49 0.00 41.09 3.41
1483 1510 5.371115 ACCGGTATTGATTTCACAAAGTG 57.629 39.130 4.49 0.00 33.44 3.16
1484 1511 6.469410 TCTACCGGTATTGATTTCACAAAGT 58.531 36.000 16.25 0.00 33.44 2.66
1485 1512 6.978343 TCTACCGGTATTGATTTCACAAAG 57.022 37.500 16.25 0.00 33.44 2.77
1486 1513 6.183360 GCATCTACCGGTATTGATTTCACAAA 60.183 38.462 22.40 0.00 33.44 2.83
1487 1514 5.295787 GCATCTACCGGTATTGATTTCACAA 59.704 40.000 22.40 0.00 0.00 3.33
1488 1515 4.814234 GCATCTACCGGTATTGATTTCACA 59.186 41.667 22.40 0.00 0.00 3.58
1489 1516 4.084537 CGCATCTACCGGTATTGATTTCAC 60.085 45.833 22.40 9.48 0.00 3.18
1490 1517 4.055360 CGCATCTACCGGTATTGATTTCA 58.945 43.478 22.40 0.00 0.00 2.69
1491 1518 4.056050 ACGCATCTACCGGTATTGATTTC 58.944 43.478 22.40 12.79 0.00 2.17
1492 1519 4.056050 GACGCATCTACCGGTATTGATTT 58.944 43.478 22.40 8.33 0.00 2.17
1493 1520 3.069016 TGACGCATCTACCGGTATTGATT 59.931 43.478 22.40 11.49 0.00 2.57
1494 1521 2.626266 TGACGCATCTACCGGTATTGAT 59.374 45.455 22.40 16.68 0.00 2.57
1495 1522 2.025898 TGACGCATCTACCGGTATTGA 58.974 47.619 22.40 15.33 0.00 2.57
1496 1523 2.502213 TGACGCATCTACCGGTATTG 57.498 50.000 16.25 16.45 0.00 1.90
1497 1524 2.626266 TCATGACGCATCTACCGGTATT 59.374 45.455 16.25 2.79 0.00 1.89
1498 1525 2.030185 GTCATGACGCATCTACCGGTAT 60.030 50.000 16.25 0.00 0.00 2.73
1499 1526 1.335810 GTCATGACGCATCTACCGGTA 59.664 52.381 14.95 14.95 0.00 4.02
1500 1527 0.102481 GTCATGACGCATCTACCGGT 59.898 55.000 13.98 13.98 0.00 5.28
1501 1528 0.385751 AGTCATGACGCATCTACCGG 59.614 55.000 19.85 0.00 36.20 5.28
1502 1529 2.209838 AAGTCATGACGCATCTACCG 57.790 50.000 19.85 0.00 36.20 4.02
1503 1530 5.109903 ACTTTAAGTCATGACGCATCTACC 58.890 41.667 19.85 0.00 36.20 3.18
1504 1531 6.648725 AACTTTAAGTCATGACGCATCTAC 57.351 37.500 19.85 0.00 36.20 2.59
1505 1532 6.871492 TGAAACTTTAAGTCATGACGCATCTA 59.129 34.615 19.85 5.55 36.20 1.98
1506 1533 5.700832 TGAAACTTTAAGTCATGACGCATCT 59.299 36.000 19.85 6.46 36.20 2.90
1507 1534 5.927030 TGAAACTTTAAGTCATGACGCATC 58.073 37.500 19.85 11.06 36.20 3.91
1508 1535 5.940192 TGAAACTTTAAGTCATGACGCAT 57.060 34.783 19.85 12.70 36.20 4.73
1509 1536 5.940192 ATGAAACTTTAAGTCATGACGCA 57.060 34.783 19.85 9.13 36.20 5.24
1510 1537 7.962918 ACAATATGAAACTTTAAGTCATGACGC 59.037 33.333 19.85 0.00 34.01 5.19
1532 1559 9.109393 ACATCTACGATGCAAAAGTTATACAAT 57.891 29.630 3.88 0.00 0.00 2.71
1533 1560 8.487313 ACATCTACGATGCAAAAGTTATACAA 57.513 30.769 3.88 0.00 0.00 2.41
1534 1561 8.387354 CAACATCTACGATGCAAAAGTTATACA 58.613 33.333 3.88 0.00 0.00 2.29
1535 1562 8.600625 TCAACATCTACGATGCAAAAGTTATAC 58.399 33.333 3.88 0.00 0.00 1.47
1536 1563 8.710835 TCAACATCTACGATGCAAAAGTTATA 57.289 30.769 3.88 0.00 0.00 0.98
1537 1564 7.609760 TCAACATCTACGATGCAAAAGTTAT 57.390 32.000 3.88 0.00 0.00 1.89
1538 1565 7.609760 ATCAACATCTACGATGCAAAAGTTA 57.390 32.000 3.88 0.00 0.00 2.24
1539 1566 5.940192 TCAACATCTACGATGCAAAAGTT 57.060 34.783 3.88 0.00 0.00 2.66
1540 1567 6.818644 AGTATCAACATCTACGATGCAAAAGT 59.181 34.615 3.88 0.00 0.00 2.66
1541 1568 7.239166 AGTATCAACATCTACGATGCAAAAG 57.761 36.000 3.88 0.00 0.00 2.27
1542 1569 7.609760 AAGTATCAACATCTACGATGCAAAA 57.390 32.000 3.88 0.00 0.00 2.44
1543 1570 7.609760 AAAGTATCAACATCTACGATGCAAA 57.390 32.000 3.88 0.00 0.00 3.68
1544 1571 7.609760 AAAAGTATCAACATCTACGATGCAA 57.390 32.000 3.88 0.00 0.00 4.08
1545 1572 7.333174 TGAAAAAGTATCAACATCTACGATGCA 59.667 33.333 3.88 0.00 0.00 3.96
1546 1573 7.684670 TGAAAAAGTATCAACATCTACGATGC 58.315 34.615 3.88 0.00 0.00 3.91
1597 1624 9.495754 GCATATAAGAATTGTCTGAAGTCAAAC 57.504 33.333 0.00 0.00 33.05 2.93
1598 1625 9.230122 TGCATATAAGAATTGTCTGAAGTCAAA 57.770 29.630 0.00 0.00 33.05 2.69
1599 1626 8.791327 TGCATATAAGAATTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 33.05 3.18
1600 1627 8.260114 TCTGCATATAAGAATTGTCTGAAGTCA 58.740 33.333 0.00 0.00 33.05 3.41
1601 1628 8.654230 TCTGCATATAAGAATTGTCTGAAGTC 57.346 34.615 0.00 0.00 33.05 3.01
1602 1629 8.263640 ACTCTGCATATAAGAATTGTCTGAAGT 58.736 33.333 0.00 0.00 33.05 3.01
1603 1630 8.659925 ACTCTGCATATAAGAATTGTCTGAAG 57.340 34.615 0.00 0.00 33.05 3.02
1612 1639 9.343539 GGTCCTTTTTACTCTGCATATAAGAAT 57.656 33.333 0.00 0.00 0.00 2.40
1613 1640 7.494625 CGGTCCTTTTTACTCTGCATATAAGAA 59.505 37.037 0.00 0.00 0.00 2.52
1614 1641 6.984474 CGGTCCTTTTTACTCTGCATATAAGA 59.016 38.462 0.00 0.00 0.00 2.10
1615 1642 6.202954 CCGGTCCTTTTTACTCTGCATATAAG 59.797 42.308 0.00 0.00 0.00 1.73
1616 1643 6.053005 CCGGTCCTTTTTACTCTGCATATAA 58.947 40.000 0.00 0.00 0.00 0.98
1617 1644 5.364446 TCCGGTCCTTTTTACTCTGCATATA 59.636 40.000 0.00 0.00 0.00 0.86
1618 1645 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
1619 1646 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
1620 1647 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
1621 1648 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
1622 1649 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
1623 1650 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
1624 1651 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
1625 1652 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
1626 1653 1.907255 CTCCCTCCGGTCCTTTTTACT 59.093 52.381 0.00 0.00 0.00 2.24
1627 1654 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
1628 1655 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
1629 1656 2.034436 TACTCCCTCCGGTCCTTTTT 57.966 50.000 0.00 0.00 0.00 1.94
1630 1657 1.627329 GTTACTCCCTCCGGTCCTTTT 59.373 52.381 0.00 0.00 0.00 2.27
1631 1658 1.203275 AGTTACTCCCTCCGGTCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
1632 1659 0.412640 AGTTACTCCCTCCGGTCCTT 59.587 55.000 0.00 0.00 0.00 3.36
1633 1660 0.412640 AAGTTACTCCCTCCGGTCCT 59.587 55.000 0.00 0.00 0.00 3.85
1634 1661 1.273759 AAAGTTACTCCCTCCGGTCC 58.726 55.000 0.00 0.00 0.00 4.46
1635 1662 4.750021 ATTAAAGTTACTCCCTCCGGTC 57.250 45.455 0.00 0.00 0.00 4.79
1636 1663 6.819947 ATTATTAAAGTTACTCCCTCCGGT 57.180 37.500 0.00 0.00 0.00 5.28
1637 1664 7.052248 ACAATTATTAAAGTTACTCCCTCCGG 58.948 38.462 0.00 0.00 0.00 5.14
1638 1665 8.502105 AACAATTATTAAAGTTACTCCCTCCG 57.498 34.615 0.00 0.00 0.00 4.63
1639 1666 9.457436 TGAACAATTATTAAAGTTACTCCCTCC 57.543 33.333 0.00 0.00 0.00 4.30
1726 1754 5.299279 ACAAAACGAACCAAGATCATTCTGT 59.701 36.000 0.00 0.00 30.72 3.41
1732 1760 3.692101 ACACACAAAACGAACCAAGATCA 59.308 39.130 0.00 0.00 0.00 2.92
1793 1821 6.070995 TGTTCCTAGAAACACGATTCTACCAT 60.071 38.462 0.00 0.00 40.13 3.55
1837 1865 4.516698 AGGCAATAATATGGTCGCTGAAAG 59.483 41.667 0.00 0.00 0.00 2.62
1889 1917 7.160049 ACAATAGACATATTCAGCTGGAGATG 58.840 38.462 24.98 24.98 28.73 2.90
1991 2019 5.657470 TTATACATGCTCGCAGATCAAAC 57.343 39.130 0.00 0.00 35.82 2.93
2029 2057 8.158132 TGTTGTTGACCACTCCATAATAAACTA 58.842 33.333 0.00 0.00 0.00 2.24
2108 2136 3.055385 TGCATACCAGTCCCTTGTAGAAC 60.055 47.826 0.00 0.00 0.00 3.01
2161 2189 7.633621 ACAAATAAGTCATTCAGCATACATCG 58.366 34.615 0.00 0.00 0.00 3.84
2823 2851 1.839994 CCAATCTTGCCCTCTGAGGTA 59.160 52.381 21.70 8.26 31.93 3.08
2945 2973 9.812347 AGGGAAATGCAATATCATAGTAATCAA 57.188 29.630 0.00 0.00 0.00 2.57
3166 3194 7.681679 TGAGTAACAATGGAACTGGTATTACA 58.318 34.615 0.00 0.00 0.00 2.41
3300 3328 0.741221 GGCTCATTCGCTTCCTCGTT 60.741 55.000 0.00 0.00 0.00 3.85
3340 3368 3.866582 GAGGGTCAGCCGATGGGG 61.867 72.222 0.00 0.00 39.58 4.96
3568 3596 4.215613 TGATACCAGCTACGCTATGTACAG 59.784 45.833 0.33 0.00 36.40 2.74
3593 3621 3.526931 CTTCTTCAGAAGGACCGCATA 57.473 47.619 10.42 0.00 45.79 3.14
3699 3727 1.407989 CCTTGTCTTCCCAGCTGGATC 60.408 57.143 34.91 17.82 44.66 3.36
3701 3729 0.473694 TCCTTGTCTTCCCAGCTGGA 60.474 55.000 34.91 17.23 43.18 3.86
3812 3841 3.587923 TGACCCCGTAGAATTGTTTACG 58.412 45.455 6.73 6.73 41.59 3.18
3825 3854 0.253044 CACATGAGGATTGACCCCGT 59.747 55.000 0.00 0.00 40.05 5.28
3859 3888 2.879462 GCACGATCCGACGGTGAC 60.879 66.667 14.79 5.78 37.61 3.67
3886 3915 1.025041 CCTCGGATCGTGATCTCACA 58.975 55.000 10.69 0.00 46.75 3.58
3893 3922 2.758327 CCACCCCTCGGATCGTGA 60.758 66.667 0.00 0.00 0.00 4.35
3945 3980 4.445453 CAGCTGTATGCCACTTCAGATTA 58.555 43.478 5.25 0.00 44.23 1.75
3973 4008 6.016024 TGCTGAACTAGTCTAACTTAAACCGA 60.016 38.462 0.00 0.00 0.00 4.69
4127 4162 6.257586 ACCAGAACAGAGGTAATAGTCTTCT 58.742 40.000 0.00 0.00 36.07 2.85
4128 4163 6.532988 ACCAGAACAGAGGTAATAGTCTTC 57.467 41.667 0.00 0.00 36.07 2.87
4130 4165 6.936968 AAACCAGAACAGAGGTAATAGTCT 57.063 37.500 0.00 0.00 37.07 3.24
4135 4170 8.265764 GGACTAATAAACCAGAACAGAGGTAAT 58.734 37.037 0.00 0.00 37.07 1.89
4136 4171 7.310858 GGGACTAATAAACCAGAACAGAGGTAA 60.311 40.741 0.00 0.00 37.07 2.85
4137 4172 6.155737 GGGACTAATAAACCAGAACAGAGGTA 59.844 42.308 0.00 0.00 37.07 3.08
4138 4173 5.045797 GGGACTAATAAACCAGAACAGAGGT 60.046 44.000 0.00 0.00 40.61 3.85
4139 4174 5.189934 AGGGACTAATAAACCAGAACAGAGG 59.810 44.000 0.00 0.00 36.02 3.69
4140 4175 6.301169 AGGGACTAATAAACCAGAACAGAG 57.699 41.667 0.00 0.00 36.02 3.35
4141 4176 6.697641 AAGGGACTAATAAACCAGAACAGA 57.302 37.500 0.00 0.00 38.49 3.41
4142 4177 7.230712 ACAAAAGGGACTAATAAACCAGAACAG 59.769 37.037 0.00 0.00 38.49 3.16
4143 4178 7.064229 ACAAAAGGGACTAATAAACCAGAACA 58.936 34.615 0.00 0.00 38.49 3.18
4144 4179 7.520451 ACAAAAGGGACTAATAAACCAGAAC 57.480 36.000 0.00 0.00 38.49 3.01
4145 4180 9.816787 ATTACAAAAGGGACTAATAAACCAGAA 57.183 29.630 0.00 0.00 38.49 3.02
4146 4181 9.816787 AATTACAAAAGGGACTAATAAACCAGA 57.183 29.630 0.00 0.00 38.49 3.86
4198 4233 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
4199 4234 8.977505 GTTGACATGCATTAACATTTTGTTAGT 58.022 29.630 0.00 0.00 42.93 2.24
4200 4235 8.976471 TGTTGACATGCATTAACATTTTGTTAG 58.024 29.630 13.87 0.00 42.93 2.34
4201 4236 8.877808 TGTTGACATGCATTAACATTTTGTTA 57.122 26.923 13.87 0.00 41.45 2.41
4202 4237 7.783090 TGTTGACATGCATTAACATTTTGTT 57.217 28.000 13.87 0.00 43.88 2.83
4203 4238 7.783090 TTGTTGACATGCATTAACATTTTGT 57.217 28.000 16.96 3.14 33.56 2.83
4204 4239 9.499585 TTTTTGTTGACATGCATTAACATTTTG 57.500 25.926 16.96 0.12 33.56 2.44
4212 4247 8.858186 CGACATAATTTTTGTTGACATGCATTA 58.142 29.630 0.00 0.00 31.27 1.90
4213 4248 7.384660 ACGACATAATTTTTGTTGACATGCATT 59.615 29.630 12.49 0.00 33.50 3.56
4214 4249 6.867816 ACGACATAATTTTTGTTGACATGCAT 59.132 30.769 12.49 0.00 33.50 3.96
4215 4250 6.212235 ACGACATAATTTTTGTTGACATGCA 58.788 32.000 12.49 0.00 33.50 3.96
4216 4251 6.689178 ACGACATAATTTTTGTTGACATGC 57.311 33.333 12.49 0.00 33.50 4.06
4217 4252 7.380870 TCCAACGACATAATTTTTGTTGACATG 59.619 33.333 12.49 0.00 39.11 3.21
4218 4253 7.429633 TCCAACGACATAATTTTTGTTGACAT 58.570 30.769 12.49 0.00 39.11 3.06
4219 4254 6.796426 TCCAACGACATAATTTTTGTTGACA 58.204 32.000 12.49 0.00 39.11 3.58
4220 4255 7.867445 ATCCAACGACATAATTTTTGTTGAC 57.133 32.000 12.49 0.00 39.11 3.18
4221 4256 7.324856 CGAATCCAACGACATAATTTTTGTTGA 59.675 33.333 12.49 3.85 39.11 3.18
4222 4257 7.114247 ACGAATCCAACGACATAATTTTTGTTG 59.886 33.333 5.87 5.87 37.14 3.33
4223 4258 7.142680 ACGAATCCAACGACATAATTTTTGTT 58.857 30.769 0.00 0.00 34.70 2.83
4224 4259 6.674066 ACGAATCCAACGACATAATTTTTGT 58.326 32.000 0.00 0.00 34.70 2.83
4225 4260 8.835467 ATACGAATCCAACGACATAATTTTTG 57.165 30.769 0.00 0.00 34.70 2.44
4226 4261 8.889717 AGATACGAATCCAACGACATAATTTTT 58.110 29.630 0.00 0.00 31.98 1.94
4227 4262 8.335356 CAGATACGAATCCAACGACATAATTTT 58.665 33.333 0.00 0.00 31.98 1.82
4228 4263 7.709182 TCAGATACGAATCCAACGACATAATTT 59.291 33.333 0.00 0.00 31.98 1.82
4229 4264 7.207383 TCAGATACGAATCCAACGACATAATT 58.793 34.615 0.00 0.00 31.98 1.40
4230 4265 6.745116 TCAGATACGAATCCAACGACATAAT 58.255 36.000 0.00 0.00 31.98 1.28
4231 4266 6.139048 TCAGATACGAATCCAACGACATAA 57.861 37.500 0.00 0.00 31.98 1.90
4232 4267 5.761165 TCAGATACGAATCCAACGACATA 57.239 39.130 0.00 0.00 31.98 2.29
4233 4268 4.649088 TCAGATACGAATCCAACGACAT 57.351 40.909 0.00 0.00 31.98 3.06
4234 4269 4.171005 GTTCAGATACGAATCCAACGACA 58.829 43.478 0.00 0.00 31.98 4.35
4235 4270 4.171005 TGTTCAGATACGAATCCAACGAC 58.829 43.478 0.00 0.00 31.97 4.34
4236 4271 4.443913 TGTTCAGATACGAATCCAACGA 57.556 40.909 0.00 0.00 31.97 3.85
4237 4272 5.107837 GCTATGTTCAGATACGAATCCAACG 60.108 44.000 0.00 0.00 31.97 4.10
4238 4273 5.986135 AGCTATGTTCAGATACGAATCCAAC 59.014 40.000 0.00 0.00 31.98 3.77
4239 4274 6.161855 AGCTATGTTCAGATACGAATCCAA 57.838 37.500 0.00 0.00 31.98 3.53
4240 4275 5.791336 AGCTATGTTCAGATACGAATCCA 57.209 39.130 0.00 0.00 31.98 3.41
4241 4276 6.701841 TGAAAGCTATGTTCAGATACGAATCC 59.298 38.462 0.00 0.00 31.98 3.01
4242 4277 7.700322 TGAAAGCTATGTTCAGATACGAATC 57.300 36.000 0.00 0.00 31.45 2.52
4243 4278 8.554528 CATTGAAAGCTATGTTCAGATACGAAT 58.445 33.333 0.00 0.00 36.41 3.34
4244 4279 7.763985 TCATTGAAAGCTATGTTCAGATACGAA 59.236 33.333 0.00 0.00 36.41 3.85
4245 4280 7.264947 TCATTGAAAGCTATGTTCAGATACGA 58.735 34.615 0.00 0.00 36.41 3.43
4246 4281 7.468922 TCATTGAAAGCTATGTTCAGATACG 57.531 36.000 0.00 0.00 36.41 3.06
4264 4299 9.518906 GCATGTCACAACAAATTATATCATTGA 57.481 29.630 0.00 0.00 39.30 2.57
4265 4300 9.303537 TGCATGTCACAACAAATTATATCATTG 57.696 29.630 0.00 0.00 39.30 2.82
4272 4307 9.656040 ATGTTTATGCATGTCACAACAAATTAT 57.344 25.926 10.16 0.00 39.30 1.28
4273 4308 9.486497 AATGTTTATGCATGTCACAACAAATTA 57.514 25.926 10.16 0.00 39.30 1.40
4274 4309 7.966246 ATGTTTATGCATGTCACAACAAATT 57.034 28.000 10.16 0.00 39.30 1.82
4275 4310 7.966246 AATGTTTATGCATGTCACAACAAAT 57.034 28.000 10.16 2.42 39.30 2.32
4276 4311 7.783090 AAATGTTTATGCATGTCACAACAAA 57.217 28.000 10.16 0.00 39.30 2.83
4277 4312 7.279536 ACAAAATGTTTATGCATGTCACAACAA 59.720 29.630 10.16 0.00 39.30 2.83
4278 4313 6.760298 ACAAAATGTTTATGCATGTCACAACA 59.240 30.769 10.16 10.47 40.38 3.33
4279 4314 7.176285 ACAAAATGTTTATGCATGTCACAAC 57.824 32.000 10.16 5.18 0.00 3.32
4280 4315 7.783090 AACAAAATGTTTATGCATGTCACAA 57.217 28.000 10.16 0.00 37.26 3.33
4281 4316 8.140628 ACTAACAAAATGTTTATGCATGTCACA 58.859 29.630 10.16 9.55 41.45 3.58
4282 4317 8.519492 ACTAACAAAATGTTTATGCATGTCAC 57.481 30.769 10.16 3.61 41.45 3.67
4309 4344 9.558396 TCTGTGCCAAATTTTGATCTTAAATTT 57.442 25.926 18.20 18.20 42.72 1.82
4310 4345 9.729281 ATCTGTGCCAAATTTTGATCTTAAATT 57.271 25.926 10.72 11.12 36.91 1.82
4311 4346 9.729281 AATCTGTGCCAAATTTTGATCTTAAAT 57.271 25.926 10.72 0.00 0.00 1.40
4313 4348 9.638239 GTAATCTGTGCCAAATTTTGATCTTAA 57.362 29.630 10.72 0.00 0.00 1.85
4314 4349 8.801299 TGTAATCTGTGCCAAATTTTGATCTTA 58.199 29.630 10.72 0.00 0.00 2.10
4315 4350 7.669427 TGTAATCTGTGCCAAATTTTGATCTT 58.331 30.769 10.72 0.00 0.00 2.40
4316 4351 7.177216 TCTGTAATCTGTGCCAAATTTTGATCT 59.823 33.333 10.72 0.00 0.00 2.75
4317 4352 7.315142 TCTGTAATCTGTGCCAAATTTTGATC 58.685 34.615 10.72 3.09 0.00 2.92
4318 4353 7.230849 TCTGTAATCTGTGCCAAATTTTGAT 57.769 32.000 10.72 0.00 0.00 2.57
4319 4354 6.647334 TCTGTAATCTGTGCCAAATTTTGA 57.353 33.333 10.72 0.00 0.00 2.69
4320 4355 6.146021 GGTTCTGTAATCTGTGCCAAATTTTG 59.854 38.462 1.99 1.99 0.00 2.44
4321 4356 6.183360 TGGTTCTGTAATCTGTGCCAAATTTT 60.183 34.615 0.00 0.00 0.00 1.82
4322 4357 5.304101 TGGTTCTGTAATCTGTGCCAAATTT 59.696 36.000 0.00 0.00 0.00 1.82
4323 4358 4.832266 TGGTTCTGTAATCTGTGCCAAATT 59.168 37.500 0.00 0.00 0.00 1.82
4324 4359 4.406456 TGGTTCTGTAATCTGTGCCAAAT 58.594 39.130 0.00 0.00 0.00 2.32
4325 4360 3.826524 TGGTTCTGTAATCTGTGCCAAA 58.173 40.909 0.00 0.00 0.00 3.28
4326 4361 3.500448 TGGTTCTGTAATCTGTGCCAA 57.500 42.857 0.00 0.00 0.00 4.52
4327 4362 3.500448 TTGGTTCTGTAATCTGTGCCA 57.500 42.857 0.00 0.00 0.00 4.92
4328 4363 6.322491 GTTTATTGGTTCTGTAATCTGTGCC 58.678 40.000 0.00 0.00 0.00 5.01
4329 4364 6.072175 TGGTTTATTGGTTCTGTAATCTGTGC 60.072 38.462 0.00 0.00 0.00 4.57
4330 4365 7.362056 CCTGGTTTATTGGTTCTGTAATCTGTG 60.362 40.741 0.00 0.00 0.00 3.66
4331 4366 6.659242 CCTGGTTTATTGGTTCTGTAATCTGT 59.341 38.462 0.00 0.00 0.00 3.41
4332 4367 6.884295 TCCTGGTTTATTGGTTCTGTAATCTG 59.116 38.462 0.00 0.00 0.00 2.90
4333 4368 6.884836 GTCCTGGTTTATTGGTTCTGTAATCT 59.115 38.462 0.00 0.00 0.00 2.40
4334 4369 6.183360 CGTCCTGGTTTATTGGTTCTGTAATC 60.183 42.308 0.00 0.00 0.00 1.75
4335 4370 5.646360 CGTCCTGGTTTATTGGTTCTGTAAT 59.354 40.000 0.00 0.00 0.00 1.89
4336 4371 4.998672 CGTCCTGGTTTATTGGTTCTGTAA 59.001 41.667 0.00 0.00 0.00 2.41
4337 4372 4.563993 CCGTCCTGGTTTATTGGTTCTGTA 60.564 45.833 0.00 0.00 0.00 2.74
4338 4373 3.408634 CGTCCTGGTTTATTGGTTCTGT 58.591 45.455 0.00 0.00 0.00 3.41
4339 4374 2.747446 CCGTCCTGGTTTATTGGTTCTG 59.253 50.000 0.00 0.00 0.00 3.02
4340 4375 2.640826 TCCGTCCTGGTTTATTGGTTCT 59.359 45.455 0.00 0.00 39.52 3.01
4341 4376 3.007635 CTCCGTCCTGGTTTATTGGTTC 58.992 50.000 0.00 0.00 39.52 3.62
4342 4377 2.290705 CCTCCGTCCTGGTTTATTGGTT 60.291 50.000 0.00 0.00 39.52 3.67
4343 4378 1.280998 CCTCCGTCCTGGTTTATTGGT 59.719 52.381 0.00 0.00 39.52 3.67
4344 4379 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
4345 4380 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
4346 4381 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
4347 4382 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
4348 4383 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
4349 4384 2.454538 CTACTACCTCCGTCCTGGTTT 58.545 52.381 0.00 0.00 39.52 3.27
4350 4385 1.959028 GCTACTACCTCCGTCCTGGTT 60.959 57.143 0.00 0.00 39.52 3.67
4351 4386 0.395448 GCTACTACCTCCGTCCTGGT 60.395 60.000 0.00 0.00 39.52 4.00
4352 4387 0.106619 AGCTACTACCTCCGTCCTGG 60.107 60.000 0.00 0.00 40.09 4.45
4353 4388 1.310904 GAGCTACTACCTCCGTCCTG 58.689 60.000 0.00 0.00 0.00 3.86
4354 4389 0.179051 CGAGCTACTACCTCCGTCCT 60.179 60.000 0.00 0.00 0.00 3.85
4355 4390 1.784036 GCGAGCTACTACCTCCGTCC 61.784 65.000 0.00 0.00 0.00 4.79
4356 4391 0.814812 AGCGAGCTACTACCTCCGTC 60.815 60.000 0.00 0.00 0.00 4.79
4357 4392 0.467384 TAGCGAGCTACTACCTCCGT 59.533 55.000 0.00 0.00 0.00 4.69
4358 4393 1.149987 CTAGCGAGCTACTACCTCCG 58.850 60.000 0.00 0.00 0.00 4.63
4359 4394 1.874872 CACTAGCGAGCTACTACCTCC 59.125 57.143 0.00 0.00 0.00 4.30
4360 4395 2.288458 CACACTAGCGAGCTACTACCTC 59.712 54.545 0.00 0.00 0.00 3.85
4361 4396 2.290464 CACACTAGCGAGCTACTACCT 58.710 52.381 0.00 0.00 0.00 3.08
4362 4397 1.334243 CCACACTAGCGAGCTACTACC 59.666 57.143 0.00 0.00 0.00 3.18
4363 4398 2.015587 ACCACACTAGCGAGCTACTAC 58.984 52.381 0.00 0.00 0.00 2.73
4364 4399 2.414994 ACCACACTAGCGAGCTACTA 57.585 50.000 0.00 0.00 0.00 1.82
4365 4400 1.546961 AACCACACTAGCGAGCTACT 58.453 50.000 0.00 0.00 0.00 2.57
4366 4401 1.993370 CAAACCACACTAGCGAGCTAC 59.007 52.381 0.00 0.00 0.00 3.58
4367 4402 1.890489 TCAAACCACACTAGCGAGCTA 59.110 47.619 4.63 4.63 0.00 3.32
4368 4403 0.679505 TCAAACCACACTAGCGAGCT 59.320 50.000 2.25 2.25 0.00 4.09
4369 4404 1.071605 CTCAAACCACACTAGCGAGC 58.928 55.000 0.00 0.00 0.00 5.03
4370 4405 2.440539 ACTCAAACCACACTAGCGAG 57.559 50.000 0.00 0.00 0.00 5.03
4371 4406 2.230508 CCTACTCAAACCACACTAGCGA 59.769 50.000 0.00 0.00 0.00 4.93
4372 4407 2.230508 TCCTACTCAAACCACACTAGCG 59.769 50.000 0.00 0.00 0.00 4.26
4373 4408 3.955650 TCCTACTCAAACCACACTAGC 57.044 47.619 0.00 0.00 0.00 3.42
4374 4409 5.661056 TGATCCTACTCAAACCACACTAG 57.339 43.478 0.00 0.00 0.00 2.57
4375 4410 5.626809 GCATGATCCTACTCAAACCACACTA 60.627 44.000 0.00 0.00 0.00 2.74
4376 4411 4.836825 CATGATCCTACTCAAACCACACT 58.163 43.478 0.00 0.00 0.00 3.55
4377 4412 3.375299 GCATGATCCTACTCAAACCACAC 59.625 47.826 0.00 0.00 0.00 3.82
4378 4413 3.609853 GCATGATCCTACTCAAACCACA 58.390 45.455 0.00 0.00 0.00 4.17
4379 4414 2.945668 GGCATGATCCTACTCAAACCAC 59.054 50.000 0.00 0.00 0.00 4.16
4380 4415 2.419990 CGGCATGATCCTACTCAAACCA 60.420 50.000 0.00 0.00 0.00 3.67
4381 4416 2.213499 CGGCATGATCCTACTCAAACC 58.787 52.381 0.00 0.00 0.00 3.27
4382 4417 2.906354 ACGGCATGATCCTACTCAAAC 58.094 47.619 0.00 0.00 0.00 2.93
4383 4418 3.270027 CAACGGCATGATCCTACTCAAA 58.730 45.455 0.00 0.00 0.00 2.69
4384 4419 2.905075 CAACGGCATGATCCTACTCAA 58.095 47.619 0.00 0.00 0.00 3.02
4385 4420 1.473257 GCAACGGCATGATCCTACTCA 60.473 52.381 0.00 0.00 40.72 3.41
4386 4421 1.221414 GCAACGGCATGATCCTACTC 58.779 55.000 0.00 0.00 40.72 2.59
4387 4422 0.530650 CGCAACGGCATGATCCTACT 60.531 55.000 0.00 0.00 41.24 2.57
4388 4423 0.529773 TCGCAACGGCATGATCCTAC 60.530 55.000 0.00 0.00 41.24 3.18
4389 4424 0.529773 GTCGCAACGGCATGATCCTA 60.530 55.000 0.00 0.00 41.24 2.94
4390 4425 1.815421 GTCGCAACGGCATGATCCT 60.815 57.895 0.00 0.00 41.24 3.24
4391 4426 2.040213 CTGTCGCAACGGCATGATCC 62.040 60.000 0.00 0.00 41.69 3.36
4392 4427 1.349627 CTGTCGCAACGGCATGATC 59.650 57.895 0.00 0.00 41.69 2.92
4393 4428 1.375908 ACTGTCGCAACGGCATGAT 60.376 52.632 0.00 0.00 41.69 2.45
4394 4429 2.030412 ACTGTCGCAACGGCATGA 59.970 55.556 0.00 0.00 41.69 3.07
4395 4430 2.174107 CACTGTCGCAACGGCATG 59.826 61.111 0.00 0.00 41.69 4.06
4396 4431 3.726517 GCACTGTCGCAACGGCAT 61.727 61.111 0.00 0.00 41.69 4.40
4405 4440 0.096976 CCTTTAATGCGGCACTGTCG 59.903 55.000 4.03 0.00 0.00 4.35
4406 4441 1.165270 ACCTTTAATGCGGCACTGTC 58.835 50.000 4.03 0.00 0.00 3.51
4407 4442 2.483014 TACCTTTAATGCGGCACTGT 57.517 45.000 4.03 0.00 0.00 3.55
4408 4443 2.486203 TGTTACCTTTAATGCGGCACTG 59.514 45.455 4.03 0.00 0.00 3.66
4409 4444 2.486592 GTGTTACCTTTAATGCGGCACT 59.513 45.455 4.03 0.00 0.00 4.40
4410 4445 2.726681 CGTGTTACCTTTAATGCGGCAC 60.727 50.000 4.03 0.00 0.00 5.01
4411 4446 1.465387 CGTGTTACCTTTAATGCGGCA 59.535 47.619 4.58 4.58 0.00 5.69
4412 4447 1.465777 ACGTGTTACCTTTAATGCGGC 59.534 47.619 0.00 0.00 0.00 6.53
4413 4448 3.186817 TCAACGTGTTACCTTTAATGCGG 59.813 43.478 0.00 0.00 0.00 5.69
4414 4449 4.392619 TCAACGTGTTACCTTTAATGCG 57.607 40.909 0.00 0.00 0.00 4.73
4415 4450 7.452630 TTTTTCAACGTGTTACCTTTAATGC 57.547 32.000 0.00 0.00 0.00 3.56
4421 4456 9.673454 GATCTTAATTTTTCAACGTGTTACCTT 57.327 29.630 0.00 0.00 0.00 3.50
4422 4457 8.013378 CGATCTTAATTTTTCAACGTGTTACCT 58.987 33.333 0.00 0.00 0.00 3.08
4423 4458 8.011106 TCGATCTTAATTTTTCAACGTGTTACC 58.989 33.333 0.00 0.00 0.00 2.85
4424 4459 8.922738 TCGATCTTAATTTTTCAACGTGTTAC 57.077 30.769 0.00 0.00 0.00 2.50
4425 4460 9.536558 CATCGATCTTAATTTTTCAACGTGTTA 57.463 29.630 0.00 0.00 0.00 2.41
4426 4461 8.286800 TCATCGATCTTAATTTTTCAACGTGTT 58.713 29.630 0.00 0.00 0.00 3.32
4427 4462 7.802738 TCATCGATCTTAATTTTTCAACGTGT 58.197 30.769 0.00 0.00 0.00 4.49
4428 4463 8.653984 TTCATCGATCTTAATTTTTCAACGTG 57.346 30.769 0.00 0.00 0.00 4.49
4429 4464 7.481798 GCTTCATCGATCTTAATTTTTCAACGT 59.518 33.333 0.00 0.00 0.00 3.99
4430 4465 7.304284 CGCTTCATCGATCTTAATTTTTCAACG 60.304 37.037 0.00 0.00 0.00 4.10
4431 4466 7.044706 CCGCTTCATCGATCTTAATTTTTCAAC 60.045 37.037 0.00 0.00 0.00 3.18
4432 4467 6.966632 CCGCTTCATCGATCTTAATTTTTCAA 59.033 34.615 0.00 0.00 0.00 2.69
4433 4468 6.315144 TCCGCTTCATCGATCTTAATTTTTCA 59.685 34.615 0.00 0.00 0.00 2.69
4434 4469 6.715464 TCCGCTTCATCGATCTTAATTTTTC 58.285 36.000 0.00 0.00 0.00 2.29
4435 4470 6.677781 TCCGCTTCATCGATCTTAATTTTT 57.322 33.333 0.00 0.00 0.00 1.94
4436 4471 6.677781 TTCCGCTTCATCGATCTTAATTTT 57.322 33.333 0.00 0.00 0.00 1.82
4437 4472 6.867662 ATTCCGCTTCATCGATCTTAATTT 57.132 33.333 0.00 0.00 0.00 1.82
4438 4473 6.089551 CGTATTCCGCTTCATCGATCTTAATT 59.910 38.462 0.00 0.00 0.00 1.40
4439 4474 5.573282 CGTATTCCGCTTCATCGATCTTAAT 59.427 40.000 0.00 0.00 0.00 1.40
4440 4475 4.915667 CGTATTCCGCTTCATCGATCTTAA 59.084 41.667 0.00 0.00 0.00 1.85
4441 4476 4.214758 TCGTATTCCGCTTCATCGATCTTA 59.785 41.667 0.00 0.00 36.19 2.10
4442 4477 3.004419 TCGTATTCCGCTTCATCGATCTT 59.996 43.478 0.00 0.00 36.19 2.40
4443 4478 2.552743 TCGTATTCCGCTTCATCGATCT 59.447 45.455 0.00 0.00 36.19 2.75
4444 4479 2.929960 TCGTATTCCGCTTCATCGATC 58.070 47.619 0.00 0.00 36.19 3.69
4445 4480 3.057526 TCATCGTATTCCGCTTCATCGAT 60.058 43.478 0.00 0.00 37.10 3.59
4446 4481 2.292292 TCATCGTATTCCGCTTCATCGA 59.708 45.455 0.00 0.00 36.19 3.59
4447 4482 2.661594 TCATCGTATTCCGCTTCATCG 58.338 47.619 0.00 0.00 36.19 3.84
4448 4483 3.990469 ACATCATCGTATTCCGCTTCATC 59.010 43.478 0.00 0.00 36.19 2.92
4449 4484 3.995199 ACATCATCGTATTCCGCTTCAT 58.005 40.909 0.00 0.00 36.19 2.57
4450 4485 3.452755 ACATCATCGTATTCCGCTTCA 57.547 42.857 0.00 0.00 36.19 3.02
4451 4486 3.365220 GCTACATCATCGTATTCCGCTTC 59.635 47.826 0.00 0.00 36.19 3.86
4452 4487 3.318017 GCTACATCATCGTATTCCGCTT 58.682 45.455 0.00 0.00 36.19 4.68
4453 4488 2.352814 GGCTACATCATCGTATTCCGCT 60.353 50.000 0.00 0.00 36.19 5.52
4454 4489 1.993370 GGCTACATCATCGTATTCCGC 59.007 52.381 0.00 0.00 36.19 5.54
4455 4490 3.297830 TGGCTACATCATCGTATTCCG 57.702 47.619 0.00 0.00 38.13 4.30
4472 4507 4.148825 AGGTGACCGAGCGATGGC 62.149 66.667 0.00 0.00 40.37 4.40
4473 4508 2.202797 CAGGTGACCGAGCGATGG 60.203 66.667 0.00 0.00 0.00 3.51
4474 4509 0.179100 ATTCAGGTGACCGAGCGATG 60.179 55.000 0.00 0.00 0.00 3.84
4475 4510 0.537188 AATTCAGGTGACCGAGCGAT 59.463 50.000 0.00 0.00 0.00 4.58
4476 4511 0.108804 GAATTCAGGTGACCGAGCGA 60.109 55.000 0.00 0.00 0.00 4.93
4477 4512 0.389817 TGAATTCAGGTGACCGAGCG 60.390 55.000 3.38 0.00 0.00 5.03
4478 4513 2.029838 ATGAATTCAGGTGACCGAGC 57.970 50.000 14.54 0.00 0.00 5.03
4479 4514 6.494893 TTTTTATGAATTCAGGTGACCGAG 57.505 37.500 14.54 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.