Multiple sequence alignment - TraesCS5B01G139200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G139200 chr5B 100.000 2579 0 0 1 2579 262841416 262838838 0.000000e+00 4763.0
1 TraesCS5B01G139200 chr5D 90.674 1469 76 25 667 2109 240841245 240842678 0.000000e+00 1897.0
2 TraesCS5B01G139200 chr5D 82.960 669 107 6 5 670 240526653 240527317 4.750000e-167 597.0
3 TraesCS5B01G139200 chr5D 81.405 484 70 15 2109 2579 501490809 501490333 6.740000e-101 377.0
4 TraesCS5B01G139200 chr5A 91.696 1397 56 29 741 2104 312925993 312924624 0.000000e+00 1882.0
5 TraesCS5B01G139200 chr5A 95.238 42 2 0 670 711 312926040 312925999 1.660000e-07 67.6
6 TraesCS5B01G139200 chr2A 90.555 667 61 1 3 669 613736285 613736949 0.000000e+00 881.0
7 TraesCS5B01G139200 chr2A 77.645 671 143 6 1 669 712227629 712228294 4.000000e-108 401.0
8 TraesCS5B01G139200 chr2D 83.283 658 104 5 16 670 650481721 650482375 3.670000e-168 601.0
9 TraesCS5B01G139200 chr1D 83.107 663 106 5 11 670 431512168 431511509 1.320000e-167 599.0
10 TraesCS5B01G139200 chr3D 82.202 663 111 6 11 670 406414289 406413631 4.820000e-157 564.0
11 TraesCS5B01G139200 chr3D 82.105 665 111 5 11 669 570306534 570305872 1.730000e-156 562.0
12 TraesCS5B01G139200 chr6B 81.669 671 112 6 5 667 67330657 67329990 4.850000e-152 547.0
13 TraesCS5B01G139200 chr3A 77.900 638 132 9 18 653 724675055 724674425 3.110000e-104 388.0
14 TraesCS5B01G139200 chr7D 85.970 335 36 4 2250 2575 149088496 149088164 5.280000e-92 348.0
15 TraesCS5B01G139200 chr2B 78.903 474 77 13 2114 2575 92306222 92305760 1.500000e-77 300.0
16 TraesCS5B01G139200 chr4A 78.512 484 83 14 2109 2579 703319496 703319021 5.390000e-77 298.0
17 TraesCS5B01G139200 chr1A 81.150 313 47 6 2275 2575 35558042 35557730 9.220000e-60 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G139200 chr5B 262838838 262841416 2578 True 4763.0 4763 100.000 1 2579 1 chr5B.!!$R1 2578
1 TraesCS5B01G139200 chr5D 240841245 240842678 1433 False 1897.0 1897 90.674 667 2109 1 chr5D.!!$F2 1442
2 TraesCS5B01G139200 chr5D 240526653 240527317 664 False 597.0 597 82.960 5 670 1 chr5D.!!$F1 665
3 TraesCS5B01G139200 chr5A 312924624 312926040 1416 True 974.8 1882 93.467 670 2104 2 chr5A.!!$R1 1434
4 TraesCS5B01G139200 chr2A 613736285 613736949 664 False 881.0 881 90.555 3 669 1 chr2A.!!$F1 666
5 TraesCS5B01G139200 chr2A 712227629 712228294 665 False 401.0 401 77.645 1 669 1 chr2A.!!$F2 668
6 TraesCS5B01G139200 chr2D 650481721 650482375 654 False 601.0 601 83.283 16 670 1 chr2D.!!$F1 654
7 TraesCS5B01G139200 chr1D 431511509 431512168 659 True 599.0 599 83.107 11 670 1 chr1D.!!$R1 659
8 TraesCS5B01G139200 chr3D 406413631 406414289 658 True 564.0 564 82.202 11 670 1 chr3D.!!$R1 659
9 TraesCS5B01G139200 chr3D 570305872 570306534 662 True 562.0 562 82.105 11 669 1 chr3D.!!$R2 658
10 TraesCS5B01G139200 chr6B 67329990 67330657 667 True 547.0 547 81.669 5 667 1 chr6B.!!$R1 662
11 TraesCS5B01G139200 chr3A 724674425 724675055 630 True 388.0 388 77.900 18 653 1 chr3A.!!$R1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 201 0.108186 TGGACGATGGATGTGTGCTC 60.108 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 2218 0.380378 TTGAGCCAAAACAGACGCAC 59.62 50.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.316308 TCTTCCACAAGAGAAGCAAAAGC 59.684 43.478 0.00 0.00 40.48 3.51
185 195 3.885297 GGATCAATTTGGACGATGGATGT 59.115 43.478 0.00 0.00 0.00 3.06
191 201 0.108186 TGGACGATGGATGTGTGCTC 60.108 55.000 0.00 0.00 0.00 4.26
243 253 5.100259 CGTGTGTCGTTCCTCAAGTTATAT 58.900 41.667 0.00 0.00 34.52 0.86
295 305 1.172180 CCGGCCAAACTTGAGCTCAA 61.172 55.000 26.87 26.87 0.00 3.02
303 313 1.613836 ACTTGAGCTCAAAAGGCTGG 58.386 50.000 28.16 17.40 40.40 4.85
375 385 1.228124 TGCTCCTTCCCAAACACGG 60.228 57.895 0.00 0.00 0.00 4.94
406 416 2.163010 CGCTTGGATTCAAACTCAGCAT 59.837 45.455 0.00 0.00 31.77 3.79
439 449 1.153628 CCTAGTGGGCGGAAAGTCG 60.154 63.158 0.00 0.00 0.00 4.18
507 517 3.005554 CTGGATGTGAAGAAGATTGCGT 58.994 45.455 0.00 0.00 0.00 5.24
541 551 0.108396 TGCTAGCAGCCACTTTGTCA 59.892 50.000 14.93 0.00 41.51 3.58
590 600 3.003763 GGGTGTCGCCTCCTCCTT 61.004 66.667 1.66 0.00 37.43 3.36
651 661 3.729489 ACGGAGCGAGGGGAGAGA 61.729 66.667 0.00 0.00 0.00 3.10
702 712 1.887854 CACACCATCAAGGCATCAACA 59.112 47.619 0.00 0.00 43.14 3.33
711 721 2.254546 AGGCATCAACACAAGTTCGA 57.745 45.000 0.00 0.00 35.28 3.71
713 723 1.873591 GGCATCAACACAAGTTCGACT 59.126 47.619 0.00 0.00 35.28 4.18
715 725 2.802816 GCATCAACACAAGTTCGACTCT 59.197 45.455 0.00 0.00 35.28 3.24
719 729 2.510768 ACACAAGTTCGACTCTGGTC 57.489 50.000 0.00 0.00 38.97 4.02
722 732 1.754803 ACAAGTTCGACTCTGGTCACA 59.245 47.619 0.00 0.00 42.21 3.58
723 733 2.365617 ACAAGTTCGACTCTGGTCACAT 59.634 45.455 0.00 0.00 42.21 3.21
724 734 3.572682 ACAAGTTCGACTCTGGTCACATA 59.427 43.478 0.00 0.00 42.21 2.29
725 735 3.851976 AGTTCGACTCTGGTCACATAC 57.148 47.619 0.00 0.00 42.21 2.39
726 736 3.422796 AGTTCGACTCTGGTCACATACT 58.577 45.455 0.00 0.00 42.21 2.12
727 737 3.440872 AGTTCGACTCTGGTCACATACTC 59.559 47.826 0.00 0.00 42.21 2.59
728 738 3.351794 TCGACTCTGGTCACATACTCT 57.648 47.619 0.00 0.00 42.21 3.24
729 739 3.010420 TCGACTCTGGTCACATACTCTG 58.990 50.000 0.00 0.00 42.21 3.35
732 742 4.097135 CGACTCTGGTCACATACTCTGATT 59.903 45.833 0.00 0.00 42.21 2.57
735 745 5.719085 ACTCTGGTCACATACTCTGATTCTT 59.281 40.000 0.00 0.00 0.00 2.52
736 746 6.127479 ACTCTGGTCACATACTCTGATTCTTC 60.127 42.308 0.00 0.00 0.00 2.87
739 749 6.401394 TGGTCACATACTCTGATTCTTCTTG 58.599 40.000 0.00 0.00 0.00 3.02
761 771 1.946156 CATCGCCGGTCATCGTGAG 60.946 63.158 1.90 0.00 37.11 3.51
794 805 1.207089 TCCCTTCTCATTGCCACGTAG 59.793 52.381 0.00 0.00 0.00 3.51
801 819 2.679837 CTCATTGCCACGTAGCAGAAAT 59.320 45.455 9.00 0.00 45.13 2.17
802 820 3.081061 TCATTGCCACGTAGCAGAAATT 58.919 40.909 9.00 0.00 45.13 1.82
920 944 5.066375 CCTCTCTCTATATCAATCCTGCGAG 59.934 48.000 0.00 0.00 0.00 5.03
1011 1036 1.059838 CACACGCATGATGCTCACG 59.940 57.895 16.17 2.04 42.25 4.35
1109 1134 4.974721 CGGCCACCTGTTGCCCTT 62.975 66.667 2.24 0.00 45.07 3.95
1584 1618 2.700722 GGGATCTTCTCTGAACCCAC 57.299 55.000 5.19 0.00 45.20 4.61
1585 1619 1.210722 GGGATCTTCTCTGAACCCACC 59.789 57.143 5.19 0.00 45.20 4.61
1586 1620 1.210722 GGATCTTCTCTGAACCCACCC 59.789 57.143 0.00 0.00 0.00 4.61
1587 1621 0.905357 ATCTTCTCTGAACCCACCCG 59.095 55.000 0.00 0.00 0.00 5.28
1588 1622 1.376037 CTTCTCTGAACCCACCCGC 60.376 63.158 0.00 0.00 0.00 6.13
1589 1623 1.831652 CTTCTCTGAACCCACCCGCT 61.832 60.000 0.00 0.00 0.00 5.52
1590 1624 1.827399 TTCTCTGAACCCACCCGCTC 61.827 60.000 0.00 0.00 0.00 5.03
1591 1625 2.203788 TCTGAACCCACCCGCTCT 60.204 61.111 0.00 0.00 0.00 4.09
1592 1626 2.046892 CTGAACCCACCCGCTCTG 60.047 66.667 0.00 0.00 0.00 3.35
1727 1777 6.023435 CCGTTTATGTTGTGATTGACTCATG 58.977 40.000 0.00 0.00 35.97 3.07
1729 1779 6.615088 GTTTATGTTGTGATTGACTCATGCT 58.385 36.000 0.00 0.00 35.97 3.79
1730 1780 4.696899 ATGTTGTGATTGACTCATGCTG 57.303 40.909 0.00 0.00 35.97 4.41
1799 1870 5.193663 TCTAGGAGCAGAATTCAGAATCG 57.806 43.478 8.44 0.00 0.00 3.34
1812 1883 4.063998 TCAGAATCGAGGACATGGATTG 57.936 45.455 1.91 0.00 36.58 2.67
1814 1885 4.080919 TCAGAATCGAGGACATGGATTGTT 60.081 41.667 1.91 0.00 39.18 2.83
1816 1887 4.878397 AGAATCGAGGACATGGATTGTTTC 59.122 41.667 1.91 0.00 39.18 2.78
1817 1888 3.981071 TCGAGGACATGGATTGTTTCT 57.019 42.857 0.00 0.00 39.18 2.52
1826 1897 7.040132 AGGACATGGATTGTTTCTTCTCTTTTC 60.040 37.037 0.00 0.00 39.18 2.29
1833 1904 7.880713 GGATTGTTTCTTCTCTTTTCCTACTCT 59.119 37.037 0.00 0.00 0.00 3.24
1844 1915 2.599408 TCCTACTCTCAAACCCGTCT 57.401 50.000 0.00 0.00 0.00 4.18
1845 1916 2.885616 TCCTACTCTCAAACCCGTCTT 58.114 47.619 0.00 0.00 0.00 3.01
1846 1917 2.561419 TCCTACTCTCAAACCCGTCTTG 59.439 50.000 0.00 0.00 0.00 3.02
1870 1941 5.586643 GTCTTCACCAACCATATTCTCTTCC 59.413 44.000 0.00 0.00 0.00 3.46
1889 1960 0.739813 CGGTCGGGTCAAGATCAACC 60.740 60.000 0.00 0.00 34.64 3.77
1896 1967 3.146847 GGGTCAAGATCAACCGTCTTTT 58.853 45.455 0.00 0.00 36.35 2.27
1907 1978 0.310854 CCGTCTTTTGTTGGGTGCTC 59.689 55.000 0.00 0.00 0.00 4.26
1979 2050 5.083821 GCCATTAATTATAAAGCAGGGGGA 58.916 41.667 0.00 0.00 0.00 4.81
2028 2100 3.186909 CACGTCGAGATGAAGCCAAATA 58.813 45.455 0.00 0.00 0.00 1.40
2065 2137 1.375908 TCACGTGCATCAGCCCTTC 60.376 57.895 11.67 0.00 41.13 3.46
2109 2181 3.521560 TGTGAAATCGGCTAGCACTTAG 58.478 45.455 18.24 2.12 0.00 2.18
2110 2182 2.866762 GTGAAATCGGCTAGCACTTAGG 59.133 50.000 18.24 0.00 0.00 2.69
2115 2187 2.781911 GGCTAGCACTTAGGCCAAC 58.218 57.895 18.24 0.00 46.42 3.77
2116 2188 0.253327 GGCTAGCACTTAGGCCAACT 59.747 55.000 18.24 0.00 46.42 3.16
2117 2189 1.657822 GCTAGCACTTAGGCCAACTC 58.342 55.000 10.63 0.00 0.00 3.01
2118 2190 1.744114 GCTAGCACTTAGGCCAACTCC 60.744 57.143 10.63 0.00 0.00 3.85
2119 2191 1.555075 CTAGCACTTAGGCCAACTCCA 59.445 52.381 5.01 0.00 0.00 3.86
2120 2192 0.036875 AGCACTTAGGCCAACTCCAC 59.963 55.000 5.01 0.00 0.00 4.02
2121 2193 0.960861 GCACTTAGGCCAACTCCACC 60.961 60.000 5.01 0.00 0.00 4.61
2122 2194 0.673644 CACTTAGGCCAACTCCACCG 60.674 60.000 5.01 0.00 0.00 4.94
2123 2195 1.745489 CTTAGGCCAACTCCACCGC 60.745 63.158 5.01 0.00 0.00 5.68
2124 2196 3.599285 TTAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
2141 2213 4.437587 GCCAGCCAGCCATCCTGT 62.438 66.667 0.00 0.00 40.06 4.00
2142 2214 2.124403 CCAGCCAGCCATCCTGTC 60.124 66.667 0.00 0.00 40.06 3.51
2143 2215 2.124403 CAGCCAGCCATCCTGTCC 60.124 66.667 0.00 0.00 40.06 4.02
2144 2216 3.415087 AGCCAGCCATCCTGTCCC 61.415 66.667 0.00 0.00 40.06 4.46
2145 2217 4.864334 GCCAGCCATCCTGTCCCG 62.864 72.222 0.00 0.00 40.06 5.14
2146 2218 4.181010 CCAGCCATCCTGTCCCGG 62.181 72.222 0.00 0.00 40.06 5.73
2147 2219 3.402681 CAGCCATCCTGTCCCGGT 61.403 66.667 0.00 0.00 36.79 5.28
2148 2220 3.402681 AGCCATCCTGTCCCGGTG 61.403 66.667 0.00 0.00 0.00 4.94
2150 2222 4.838152 CCATCCTGTCCCGGTGCG 62.838 72.222 0.00 0.00 0.00 5.34
2151 2223 4.082523 CATCCTGTCCCGGTGCGT 62.083 66.667 0.00 0.00 0.00 5.24
2152 2224 3.771160 ATCCTGTCCCGGTGCGTC 61.771 66.667 0.00 0.00 0.00 5.19
2153 2225 4.988716 TCCTGTCCCGGTGCGTCT 62.989 66.667 0.00 0.00 0.00 4.18
2154 2226 4.742201 CCTGTCCCGGTGCGTCTG 62.742 72.222 0.00 0.00 0.00 3.51
2155 2227 3.991051 CTGTCCCGGTGCGTCTGT 61.991 66.667 0.00 0.00 0.00 3.41
2156 2228 3.515316 CTGTCCCGGTGCGTCTGTT 62.515 63.158 0.00 0.00 0.00 3.16
2157 2229 2.280592 GTCCCGGTGCGTCTGTTT 60.281 61.111 0.00 0.00 0.00 2.83
2158 2230 1.890510 GTCCCGGTGCGTCTGTTTT 60.891 57.895 0.00 0.00 0.00 2.43
2159 2231 1.890041 TCCCGGTGCGTCTGTTTTG 60.890 57.895 0.00 0.00 0.00 2.44
2160 2232 2.637025 CCGGTGCGTCTGTTTTGG 59.363 61.111 0.00 0.00 0.00 3.28
2161 2233 2.051345 CGGTGCGTCTGTTTTGGC 60.051 61.111 0.00 0.00 0.00 4.52
2162 2234 2.542907 CGGTGCGTCTGTTTTGGCT 61.543 57.895 0.00 0.00 0.00 4.75
2163 2235 1.282875 GGTGCGTCTGTTTTGGCTC 59.717 57.895 0.00 0.00 0.00 4.70
2164 2236 1.444119 GGTGCGTCTGTTTTGGCTCA 61.444 55.000 0.00 0.00 0.00 4.26
2165 2237 0.380378 GTGCGTCTGTTTTGGCTCAA 59.620 50.000 0.00 0.00 0.00 3.02
2166 2238 1.098869 TGCGTCTGTTTTGGCTCAAA 58.901 45.000 0.00 0.00 0.00 2.69
2167 2239 1.474478 TGCGTCTGTTTTGGCTCAAAA 59.526 42.857 8.46 8.46 40.41 2.44
2176 2248 3.907894 TTTGGCTCAAAACGGACATAC 57.092 42.857 0.00 0.00 29.89 2.39
2177 2249 1.816074 TGGCTCAAAACGGACATACC 58.184 50.000 0.00 0.00 0.00 2.73
2178 2250 1.072489 TGGCTCAAAACGGACATACCA 59.928 47.619 0.00 0.00 38.90 3.25
2179 2251 2.156098 GGCTCAAAACGGACATACCAA 58.844 47.619 0.00 0.00 38.90 3.67
2180 2252 2.554893 GGCTCAAAACGGACATACCAAA 59.445 45.455 0.00 0.00 38.90 3.28
2181 2253 3.561503 GCTCAAAACGGACATACCAAAC 58.438 45.455 0.00 0.00 38.90 2.93
2182 2254 3.805823 CTCAAAACGGACATACCAAACG 58.194 45.455 0.00 0.00 38.90 3.60
2183 2255 2.548904 TCAAAACGGACATACCAAACGG 59.451 45.455 0.00 0.00 38.90 4.44
2184 2256 2.259266 AAACGGACATACCAAACGGT 57.741 45.000 0.00 0.00 40.86 4.83
2185 2257 1.799544 AACGGACATACCAAACGGTC 58.200 50.000 0.00 0.00 38.03 4.79
2186 2258 0.037046 ACGGACATACCAAACGGTCC 60.037 55.000 0.00 0.00 44.97 4.46
2189 2261 1.084289 GACATACCAAACGGTCCAGC 58.916 55.000 0.00 0.00 38.03 4.85
2190 2262 0.672401 ACATACCAAACGGTCCAGCG 60.672 55.000 0.00 0.00 38.03 5.18
2191 2263 0.672401 CATACCAAACGGTCCAGCGT 60.672 55.000 0.00 0.00 38.03 5.07
2192 2264 0.672401 ATACCAAACGGTCCAGCGTG 60.672 55.000 4.31 0.00 38.03 5.34
2193 2265 2.030490 TACCAAACGGTCCAGCGTGT 62.030 55.000 4.31 0.00 38.03 4.49
2194 2266 2.631428 CAAACGGTCCAGCGTGTG 59.369 61.111 7.06 7.06 0.00 3.82
2202 2274 2.666862 CCAGCGTGTGGGCGTAAA 60.667 61.111 0.00 0.00 43.63 2.01
2203 2275 2.038269 CCAGCGTGTGGGCGTAAAT 61.038 57.895 0.00 0.00 43.63 1.40
2204 2276 1.134487 CAGCGTGTGGGCGTAAATG 59.866 57.895 0.00 0.00 38.18 2.32
2205 2277 2.038269 AGCGTGTGGGCGTAAATGG 61.038 57.895 0.00 0.00 38.18 3.16
2206 2278 2.036006 GCGTGTGGGCGTAAATGGA 61.036 57.895 0.00 0.00 0.00 3.41
2207 2279 1.791662 CGTGTGGGCGTAAATGGAC 59.208 57.895 0.00 0.00 0.00 4.02
2208 2280 0.672401 CGTGTGGGCGTAAATGGACT 60.672 55.000 0.00 0.00 0.00 3.85
2209 2281 1.530323 GTGTGGGCGTAAATGGACTT 58.470 50.000 0.00 0.00 0.00 3.01
2210 2282 1.883926 GTGTGGGCGTAAATGGACTTT 59.116 47.619 0.00 0.00 0.00 2.66
2211 2283 2.295070 GTGTGGGCGTAAATGGACTTTT 59.705 45.455 0.00 0.00 0.00 2.27
2212 2284 3.502979 GTGTGGGCGTAAATGGACTTTTA 59.497 43.478 0.00 0.00 0.00 1.52
2213 2285 4.157105 GTGTGGGCGTAAATGGACTTTTAT 59.843 41.667 0.00 0.00 0.00 1.40
2214 2286 4.396790 TGTGGGCGTAAATGGACTTTTATC 59.603 41.667 0.00 0.00 0.00 1.75
2215 2287 3.949113 TGGGCGTAAATGGACTTTTATCC 59.051 43.478 0.00 0.00 39.45 2.59
2216 2288 3.002965 GGGCGTAAATGGACTTTTATCCG 59.997 47.826 0.00 0.00 42.24 4.18
2217 2289 3.624410 GGCGTAAATGGACTTTTATCCGT 59.376 43.478 0.00 0.00 42.24 4.69
2225 2297 5.934935 TGGACTTTTATCCGTTTTCTGAC 57.065 39.130 0.00 0.00 42.24 3.51
2226 2298 4.758165 TGGACTTTTATCCGTTTTCTGACC 59.242 41.667 0.00 0.00 42.24 4.02
2227 2299 4.142966 GGACTTTTATCCGTTTTCTGACCG 60.143 45.833 0.00 0.00 0.00 4.79
2228 2300 3.187842 ACTTTTATCCGTTTTCTGACCGC 59.812 43.478 0.00 0.00 0.00 5.68
2229 2301 2.754946 TTATCCGTTTTCTGACCGCT 57.245 45.000 0.00 0.00 0.00 5.52
2230 2302 2.754946 TATCCGTTTTCTGACCGCTT 57.245 45.000 0.00 0.00 0.00 4.68
2231 2303 1.892209 ATCCGTTTTCTGACCGCTTT 58.108 45.000 0.00 0.00 0.00 3.51
2232 2304 1.223187 TCCGTTTTCTGACCGCTTTC 58.777 50.000 0.00 0.00 0.00 2.62
2233 2305 0.110823 CCGTTTTCTGACCGCTTTCG 60.111 55.000 0.00 0.00 0.00 3.46
2234 2306 0.856641 CGTTTTCTGACCGCTTTCGA 59.143 50.000 0.00 0.00 38.10 3.71
2235 2307 1.396815 CGTTTTCTGACCGCTTTCGAC 60.397 52.381 0.00 0.00 38.10 4.20
2236 2308 1.070108 GTTTTCTGACCGCTTTCGACC 60.070 52.381 0.00 0.00 38.10 4.79
2237 2309 0.601841 TTTCTGACCGCTTTCGACCC 60.602 55.000 0.00 0.00 38.10 4.46
2238 2310 1.750341 TTCTGACCGCTTTCGACCCA 61.750 55.000 0.00 0.00 38.10 4.51
2239 2311 1.079127 CTGACCGCTTTCGACCCAT 60.079 57.895 0.00 0.00 38.10 4.00
2240 2312 1.079405 TGACCGCTTTCGACCCATC 60.079 57.895 0.00 0.00 38.10 3.51
2241 2313 1.079405 GACCGCTTTCGACCCATCA 60.079 57.895 0.00 0.00 38.10 3.07
2242 2314 1.359459 GACCGCTTTCGACCCATCAC 61.359 60.000 0.00 0.00 38.10 3.06
2243 2315 2.106683 CCGCTTTCGACCCATCACC 61.107 63.158 0.00 0.00 38.10 4.02
2244 2316 2.452813 CGCTTTCGACCCATCACCG 61.453 63.158 0.00 0.00 38.10 4.94
2245 2317 2.106683 GCTTTCGACCCATCACCGG 61.107 63.158 0.00 0.00 0.00 5.28
2246 2318 2.046700 TTTCGACCCATCACCGGC 60.047 61.111 0.00 0.00 0.00 6.13
2247 2319 3.615509 TTTCGACCCATCACCGGCC 62.616 63.158 0.00 0.00 0.00 6.13
2249 2321 3.151710 CGACCCATCACCGGCCTA 61.152 66.667 0.00 0.00 0.00 3.93
2250 2322 2.727392 CGACCCATCACCGGCCTAA 61.727 63.158 0.00 0.00 0.00 2.69
2251 2323 1.146263 GACCCATCACCGGCCTAAG 59.854 63.158 0.00 0.00 0.00 2.18
2252 2324 1.615424 ACCCATCACCGGCCTAAGT 60.615 57.895 0.00 0.00 0.00 2.24
2253 2325 1.205460 ACCCATCACCGGCCTAAGTT 61.205 55.000 0.00 0.00 0.00 2.66
2254 2326 0.034477 CCCATCACCGGCCTAAGTTT 60.034 55.000 0.00 0.00 0.00 2.66
2255 2327 1.094785 CCATCACCGGCCTAAGTTTG 58.905 55.000 0.00 0.00 0.00 2.93
2256 2328 1.094785 CATCACCGGCCTAAGTTTGG 58.905 55.000 0.00 0.00 0.00 3.28
2257 2329 0.034477 ATCACCGGCCTAAGTTTGGG 60.034 55.000 0.00 0.00 0.00 4.12
2263 2335 4.415783 CCTAAGTTTGGGCCGCTT 57.584 55.556 11.53 11.53 0.00 4.68
2264 2336 2.653557 CCTAAGTTTGGGCCGCTTT 58.346 52.632 11.95 1.20 0.00 3.51
2265 2337 0.966179 CCTAAGTTTGGGCCGCTTTT 59.034 50.000 11.95 1.53 0.00 2.27
2266 2338 2.164338 CCTAAGTTTGGGCCGCTTTTA 58.836 47.619 11.95 2.54 0.00 1.52
2267 2339 2.559231 CCTAAGTTTGGGCCGCTTTTAA 59.441 45.455 11.95 0.00 0.00 1.52
2268 2340 2.812358 AAGTTTGGGCCGCTTTTAAG 57.188 45.000 0.00 0.00 0.00 1.85
2269 2341 0.966179 AGTTTGGGCCGCTTTTAAGG 59.034 50.000 0.00 0.00 0.00 2.69
2270 2342 0.677288 GTTTGGGCCGCTTTTAAGGT 59.323 50.000 0.00 0.00 0.00 3.50
2271 2343 0.676736 TTTGGGCCGCTTTTAAGGTG 59.323 50.000 0.00 0.00 0.00 4.00
2272 2344 0.178987 TTGGGCCGCTTTTAAGGTGA 60.179 50.000 0.00 0.00 0.00 4.02
2273 2345 0.178987 TGGGCCGCTTTTAAGGTGAA 60.179 50.000 0.00 0.00 0.00 3.18
2274 2346 0.963225 GGGCCGCTTTTAAGGTGAAA 59.037 50.000 0.00 0.00 0.00 2.69
2275 2347 1.341852 GGGCCGCTTTTAAGGTGAAAA 59.658 47.619 0.00 0.00 0.00 2.29
2276 2348 2.400399 GGCCGCTTTTAAGGTGAAAAC 58.600 47.619 0.00 0.00 0.00 2.43
2277 2349 2.048498 GCCGCTTTTAAGGTGAAAACG 58.952 47.619 0.00 0.00 0.00 3.60
2278 2350 2.048498 CCGCTTTTAAGGTGAAAACGC 58.952 47.619 0.00 0.00 0.00 4.84
2279 2351 1.706597 CGCTTTTAAGGTGAAAACGCG 59.293 47.619 3.53 3.53 38.40 6.01
2280 2352 1.450533 GCTTTTAAGGTGAAAACGCGC 59.549 47.619 5.73 0.00 0.00 6.86
2281 2353 2.722071 CTTTTAAGGTGAAAACGCGCA 58.278 42.857 5.73 0.00 0.00 6.09
2282 2354 2.392933 TTTAAGGTGAAAACGCGCAG 57.607 45.000 5.73 2.42 0.00 5.18
2283 2355 1.584175 TTAAGGTGAAAACGCGCAGA 58.416 45.000 5.73 0.00 0.00 4.26
2284 2356 0.863144 TAAGGTGAAAACGCGCAGAC 59.137 50.000 5.73 0.00 0.00 3.51
2285 2357 2.101209 AAGGTGAAAACGCGCAGACG 62.101 55.000 5.73 0.00 44.07 4.18
2286 2358 2.127758 GTGAAAACGCGCAGACGG 60.128 61.111 5.73 0.00 40.57 4.79
2297 2369 4.039357 CAGACGGGCGAGACACGT 62.039 66.667 0.00 0.00 44.60 4.49
2298 2370 4.039357 AGACGGGCGAGACACGTG 62.039 66.667 15.48 15.48 44.60 4.49
2304 2376 2.803670 GCGAGACACGTGCGCTTA 60.804 61.111 25.19 0.00 46.53 3.09
2305 2377 2.158959 GCGAGACACGTGCGCTTAT 61.159 57.895 25.19 2.87 46.53 1.73
2306 2378 1.910880 CGAGACACGTGCGCTTATC 59.089 57.895 17.22 4.29 37.22 1.75
2307 2379 1.472276 CGAGACACGTGCGCTTATCC 61.472 60.000 17.22 0.71 37.22 2.59
2308 2380 0.179134 GAGACACGTGCGCTTATCCT 60.179 55.000 17.22 0.00 0.00 3.24
2309 2381 0.246635 AGACACGTGCGCTTATCCTT 59.753 50.000 17.22 0.00 0.00 3.36
2310 2382 0.645868 GACACGTGCGCTTATCCTTC 59.354 55.000 17.22 0.00 0.00 3.46
2311 2383 0.739813 ACACGTGCGCTTATCCTTCC 60.740 55.000 17.22 0.00 0.00 3.46
2312 2384 1.153429 ACGTGCGCTTATCCTTCCC 60.153 57.895 9.73 0.00 0.00 3.97
2313 2385 1.144057 CGTGCGCTTATCCTTCCCT 59.856 57.895 9.73 0.00 0.00 4.20
2314 2386 1.154205 CGTGCGCTTATCCTTCCCTG 61.154 60.000 9.73 0.00 0.00 4.45
2315 2387 0.815615 GTGCGCTTATCCTTCCCTGG 60.816 60.000 9.73 0.00 0.00 4.45
2316 2388 1.894282 GCGCTTATCCTTCCCTGGC 60.894 63.158 0.00 0.00 0.00 4.85
2317 2389 1.227973 CGCTTATCCTTCCCTGGCC 60.228 63.158 0.00 0.00 0.00 5.36
2318 2390 1.151679 GCTTATCCTTCCCTGGCCC 59.848 63.158 0.00 0.00 0.00 5.80
2319 2391 1.451936 CTTATCCTTCCCTGGCCCG 59.548 63.158 0.00 0.00 0.00 6.13
2320 2392 2.682582 CTTATCCTTCCCTGGCCCGC 62.683 65.000 0.00 0.00 0.00 6.13
2337 2409 3.343972 CCCGTCAGTGGCACAAAG 58.656 61.111 21.41 9.36 44.16 2.77
2338 2410 2.639286 CCGTCAGTGGCACAAAGC 59.361 61.111 21.41 5.95 44.16 3.51
2362 2434 3.864686 CCGGCGCCTCATTTCGTG 61.865 66.667 26.68 4.88 0.00 4.35
2363 2435 4.520846 CGGCGCCTCATTTCGTGC 62.521 66.667 26.68 0.00 34.73 5.34
2365 2437 3.430862 GCGCCTCATTTCGTGCCA 61.431 61.111 0.00 0.00 0.00 4.92
2366 2438 2.764314 GCGCCTCATTTCGTGCCAT 61.764 57.895 0.00 0.00 0.00 4.40
2367 2439 1.802636 CGCCTCATTTCGTGCCATT 59.197 52.632 0.00 0.00 0.00 3.16
2368 2440 0.171007 CGCCTCATTTCGTGCCATTT 59.829 50.000 0.00 0.00 0.00 2.32
2369 2441 1.795162 CGCCTCATTTCGTGCCATTTC 60.795 52.381 0.00 0.00 0.00 2.17
2370 2442 1.469767 GCCTCATTTCGTGCCATTTCC 60.470 52.381 0.00 0.00 0.00 3.13
2371 2443 1.134946 CCTCATTTCGTGCCATTTCCC 59.865 52.381 0.00 0.00 0.00 3.97
2372 2444 1.134946 CTCATTTCGTGCCATTTCCCC 59.865 52.381 0.00 0.00 0.00 4.81
2373 2445 0.175531 CATTTCGTGCCATTTCCCCC 59.824 55.000 0.00 0.00 0.00 5.40
2387 2459 2.534272 CCCCCAAACCCTCTCCCA 60.534 66.667 0.00 0.00 0.00 4.37
2388 2460 2.763902 CCCCAAACCCTCTCCCAC 59.236 66.667 0.00 0.00 0.00 4.61
2389 2461 2.351276 CCCAAACCCTCTCCCACG 59.649 66.667 0.00 0.00 0.00 4.94
2390 2462 2.526046 CCCAAACCCTCTCCCACGT 61.526 63.158 0.00 0.00 0.00 4.49
2391 2463 1.003718 CCAAACCCTCTCCCACGTC 60.004 63.158 0.00 0.00 0.00 4.34
2392 2464 1.003718 CAAACCCTCTCCCACGTCC 60.004 63.158 0.00 0.00 0.00 4.79
2393 2465 2.222013 AAACCCTCTCCCACGTCCC 61.222 63.158 0.00 0.00 0.00 4.46
2406 2478 4.717313 GTCCCGCCCACCACCTTC 62.717 72.222 0.00 0.00 0.00 3.46
2411 2483 4.678743 GCCCACCACCTTCCCACC 62.679 72.222 0.00 0.00 0.00 4.61
2412 2484 3.182263 CCCACCACCTTCCCACCA 61.182 66.667 0.00 0.00 0.00 4.17
2413 2485 2.547595 CCCACCACCTTCCCACCAT 61.548 63.158 0.00 0.00 0.00 3.55
2414 2486 1.304381 CCACCACCTTCCCACCATG 60.304 63.158 0.00 0.00 0.00 3.66
2415 2487 1.304381 CACCACCTTCCCACCATGG 60.304 63.158 11.19 11.19 37.25 3.66
2416 2488 2.362889 CCACCTTCCCACCATGGC 60.363 66.667 13.04 0.00 35.79 4.40
2417 2489 2.362889 CACCTTCCCACCATGGCC 60.363 66.667 13.04 0.00 35.79 5.36
2418 2490 4.047125 ACCTTCCCACCATGGCCG 62.047 66.667 13.04 2.72 35.79 6.13
2419 2491 3.727258 CCTTCCCACCATGGCCGA 61.727 66.667 13.04 1.20 35.79 5.54
2420 2492 2.597340 CTTCCCACCATGGCCGAT 59.403 61.111 13.04 0.00 35.79 4.18
2421 2493 1.825191 CTTCCCACCATGGCCGATG 60.825 63.158 13.04 1.81 35.79 3.84
2422 2494 4.504596 TCCCACCATGGCCGATGC 62.505 66.667 13.04 0.00 35.79 3.91
2434 2506 3.649986 CGATGCCCCGCCGAATTC 61.650 66.667 0.00 0.00 0.00 2.17
2435 2507 3.287520 GATGCCCCGCCGAATTCC 61.288 66.667 0.00 0.00 0.00 3.01
2436 2508 4.122149 ATGCCCCGCCGAATTCCA 62.122 61.111 0.00 0.00 0.00 3.53
2437 2509 4.794648 TGCCCCGCCGAATTCCAG 62.795 66.667 0.00 0.00 0.00 3.86
2444 2516 4.033894 CCGAATTCCAGCGGCTAG 57.966 61.111 0.26 0.00 41.17 3.42
2445 2517 1.595382 CCGAATTCCAGCGGCTAGG 60.595 63.158 0.26 7.16 41.17 3.02
2446 2518 2.247437 CGAATTCCAGCGGCTAGGC 61.247 63.158 6.15 6.15 0.00 3.93
2447 2519 1.894282 GAATTCCAGCGGCTAGGCC 60.894 63.158 11.22 0.00 46.75 5.19
2466 2538 4.778143 CTGACCCGCCCGGAAAGG 62.778 72.222 0.73 1.80 37.50 3.11
2470 2542 4.338710 CCCGCCCGGAAAGGTGAA 62.339 66.667 0.73 0.00 39.99 3.18
2471 2543 2.746277 CCGCCCGGAAAGGTGAAG 60.746 66.667 0.73 0.00 39.99 3.02
2472 2544 2.345991 CGCCCGGAAAGGTGAAGA 59.654 61.111 0.73 0.00 39.99 2.87
2473 2545 1.302192 CGCCCGGAAAGGTGAAGAA 60.302 57.895 0.73 0.00 39.99 2.52
2474 2546 1.298859 CGCCCGGAAAGGTGAAGAAG 61.299 60.000 0.73 0.00 39.99 2.85
2475 2547 0.960861 GCCCGGAAAGGTGAAGAAGG 60.961 60.000 0.73 0.00 38.74 3.46
2476 2548 0.960861 CCCGGAAAGGTGAAGAAGGC 60.961 60.000 0.73 0.00 38.74 4.35
2477 2549 1.298859 CCGGAAAGGTGAAGAAGGCG 61.299 60.000 0.00 0.00 34.51 5.52
2478 2550 1.298859 CGGAAAGGTGAAGAAGGCGG 61.299 60.000 0.00 0.00 0.00 6.13
2479 2551 1.587043 GGAAAGGTGAAGAAGGCGGC 61.587 60.000 0.00 0.00 0.00 6.53
2480 2552 1.912371 GAAAGGTGAAGAAGGCGGCG 61.912 60.000 0.51 0.51 0.00 6.46
2481 2553 3.901797 AAGGTGAAGAAGGCGGCGG 62.902 63.158 9.78 0.00 0.00 6.13
2496 2568 3.702048 CGGCCAAGGGTCCGAAGA 61.702 66.667 2.24 0.00 42.08 2.87
2497 2569 2.754375 GGCCAAGGGTCCGAAGAA 59.246 61.111 0.00 0.00 0.00 2.52
2498 2570 1.377333 GGCCAAGGGTCCGAAGAAG 60.377 63.158 0.00 0.00 0.00 2.85
2499 2571 2.041115 GCCAAGGGTCCGAAGAAGC 61.041 63.158 0.00 0.00 0.00 3.86
2500 2572 1.377333 CCAAGGGTCCGAAGAAGCC 60.377 63.158 0.00 0.00 0.00 4.35
2501 2573 1.679898 CAAGGGTCCGAAGAAGCCT 59.320 57.895 0.00 0.00 0.00 4.58
2502 2574 0.902531 CAAGGGTCCGAAGAAGCCTA 59.097 55.000 0.00 0.00 0.00 3.93
2503 2575 1.134670 CAAGGGTCCGAAGAAGCCTAG 60.135 57.143 0.00 0.00 0.00 3.02
2504 2576 0.688087 AGGGTCCGAAGAAGCCTAGG 60.688 60.000 3.67 3.67 0.00 3.02
2505 2577 0.976590 GGGTCCGAAGAAGCCTAGGT 60.977 60.000 11.31 0.00 0.00 3.08
2506 2578 0.460722 GGTCCGAAGAAGCCTAGGTC 59.539 60.000 11.31 0.30 0.00 3.85
2507 2579 0.100861 GTCCGAAGAAGCCTAGGTCG 59.899 60.000 11.31 11.06 0.00 4.79
2508 2580 1.437986 CCGAAGAAGCCTAGGTCGG 59.562 63.158 19.81 19.81 44.60 4.79
2509 2581 2.490165 CGAAGAAGCCTAGGTCGGA 58.510 57.895 11.31 0.00 0.00 4.55
2510 2582 0.815734 CGAAGAAGCCTAGGTCGGAA 59.184 55.000 11.31 0.00 0.00 4.30
2511 2583 1.202313 CGAAGAAGCCTAGGTCGGAAG 60.202 57.143 11.31 0.00 0.00 3.46
2512 2584 0.537653 AAGAAGCCTAGGTCGGAAGC 59.462 55.000 11.31 0.00 0.00 3.86
2513 2585 1.144276 GAAGCCTAGGTCGGAAGCC 59.856 63.158 11.31 0.00 0.00 4.35
2514 2586 1.612442 AAGCCTAGGTCGGAAGCCA 60.612 57.895 11.31 0.00 0.00 4.75
2515 2587 1.900545 AAGCCTAGGTCGGAAGCCAC 61.901 60.000 11.31 0.00 0.00 5.01
2516 2588 2.494918 CCTAGGTCGGAAGCCACG 59.505 66.667 0.00 0.00 0.00 4.94
2517 2589 2.202756 CTAGGTCGGAAGCCACGC 60.203 66.667 0.00 0.00 0.00 5.34
2518 2590 3.718210 CTAGGTCGGAAGCCACGCC 62.718 68.421 0.00 0.00 0.00 5.68
2534 2606 3.494336 CCGGCAGAGCTCGCAAAG 61.494 66.667 24.72 17.09 0.00 2.77
2535 2607 2.433145 CGGCAGAGCTCGCAAAGA 60.433 61.111 24.72 0.00 0.00 2.52
2536 2608 1.812922 CGGCAGAGCTCGCAAAGAT 60.813 57.895 24.72 0.00 0.00 2.40
2537 2609 1.720301 GGCAGAGCTCGCAAAGATG 59.280 57.895 24.72 11.53 0.00 2.90
2538 2610 1.712977 GGCAGAGCTCGCAAAGATGG 61.713 60.000 24.72 4.61 0.00 3.51
2539 2611 0.742281 GCAGAGCTCGCAAAGATGGA 60.742 55.000 20.64 0.00 0.00 3.41
2540 2612 1.005340 CAGAGCTCGCAAAGATGGAC 58.995 55.000 8.37 0.00 0.00 4.02
2541 2613 0.459237 AGAGCTCGCAAAGATGGACG 60.459 55.000 8.37 0.00 0.00 4.79
2542 2614 2.029904 GAGCTCGCAAAGATGGACGC 62.030 60.000 0.00 0.00 0.00 5.19
2545 2617 2.813474 CGCAAAGATGGACGCGGA 60.813 61.111 12.47 0.00 43.84 5.54
2546 2618 2.387445 CGCAAAGATGGACGCGGAA 61.387 57.895 12.47 0.00 43.84 4.30
2547 2619 1.705337 CGCAAAGATGGACGCGGAAT 61.705 55.000 12.47 0.00 43.84 3.01
2548 2620 0.451783 GCAAAGATGGACGCGGAATT 59.548 50.000 12.47 0.00 0.00 2.17
2549 2621 1.795162 GCAAAGATGGACGCGGAATTG 60.795 52.381 12.47 6.85 0.00 2.32
2550 2622 1.094785 AAAGATGGACGCGGAATTGG 58.905 50.000 12.47 0.00 0.00 3.16
2551 2623 1.376609 AAGATGGACGCGGAATTGGC 61.377 55.000 12.47 0.00 0.00 4.52
2552 2624 2.828549 ATGGACGCGGAATTGGCC 60.829 61.111 12.47 0.00 0.00 5.36
2553 2625 3.636929 ATGGACGCGGAATTGGCCA 62.637 57.895 12.47 0.00 0.00 5.36
2554 2626 3.059386 GGACGCGGAATTGGCCAA 61.059 61.111 23.00 23.00 0.00 4.52
2555 2627 2.485122 GACGCGGAATTGGCCAAG 59.515 61.111 24.94 11.28 0.00 3.61
2556 2628 2.033448 ACGCGGAATTGGCCAAGA 59.967 55.556 24.94 0.78 0.00 3.02
2557 2629 1.582610 GACGCGGAATTGGCCAAGAA 61.583 55.000 24.94 0.00 0.00 2.52
2558 2630 1.137404 CGCGGAATTGGCCAAGAAG 59.863 57.895 24.94 15.37 0.00 2.85
2559 2631 1.305219 CGCGGAATTGGCCAAGAAGA 61.305 55.000 24.94 0.00 0.00 2.87
2560 2632 0.887933 GCGGAATTGGCCAAGAAGAA 59.112 50.000 24.94 0.00 0.00 2.52
2561 2633 1.135286 GCGGAATTGGCCAAGAAGAAG 60.135 52.381 24.94 13.30 0.00 2.85
2562 2634 2.436417 CGGAATTGGCCAAGAAGAAGA 58.564 47.619 24.94 0.00 0.00 2.87
2563 2635 2.819608 CGGAATTGGCCAAGAAGAAGAA 59.180 45.455 24.94 0.00 0.00 2.52
2564 2636 3.366374 CGGAATTGGCCAAGAAGAAGAAC 60.366 47.826 24.94 6.67 0.00 3.01
2565 2637 3.056536 GGAATTGGCCAAGAAGAAGAACC 60.057 47.826 24.94 11.53 0.00 3.62
2566 2638 1.604604 TTGGCCAAGAAGAAGAACCG 58.395 50.000 16.05 0.00 0.00 4.44
2567 2639 0.250727 TGGCCAAGAAGAAGAACCGG 60.251 55.000 0.61 0.00 0.00 5.28
2568 2640 0.036306 GGCCAAGAAGAAGAACCGGA 59.964 55.000 9.46 0.00 0.00 5.14
2569 2641 1.443802 GCCAAGAAGAAGAACCGGAG 58.556 55.000 9.46 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.000163 CGAGTATGAACAGATCCCCCG 60.000 57.143 0.00 0.00 0.00 5.73
134 135 1.793714 GCTTCTTGAGAGCGAGAGTCG 60.794 57.143 0.00 0.00 43.89 4.18
162 172 2.560504 TCCATCGTCCAAATTGATCCG 58.439 47.619 0.00 0.00 0.00 4.18
185 195 0.865111 CCGACAAATTGACGAGCACA 59.135 50.000 18.20 0.00 37.72 4.57
191 201 1.257936 CGATAGCCCGACAAATTGACG 59.742 52.381 10.58 10.58 35.47 4.35
280 290 2.363359 AGCCTTTTGAGCTCAAGTTTGG 59.637 45.455 27.02 24.65 34.91 3.28
295 305 3.228188 TGAAGAACACATCCAGCCTTT 57.772 42.857 0.00 0.00 0.00 3.11
303 313 8.099364 TCTTGGAGTATTTTGAAGAACACATC 57.901 34.615 0.00 0.00 0.00 3.06
375 385 2.223595 TGAATCCAAGCGAGATCGAGAC 60.224 50.000 6.39 0.00 43.02 3.36
406 416 5.163301 GCCCACTAGGAGAGAATATGTTTGA 60.163 44.000 0.00 0.00 38.24 2.69
507 517 2.238521 CTAGCAGGGAAGGTTTTGCAA 58.761 47.619 0.00 0.00 38.97 4.08
541 551 2.507102 CGCCAACGACGATGCTCT 60.507 61.111 0.00 0.00 43.93 4.09
590 600 1.300963 GGCAAGCTGGACATCTCCA 59.699 57.895 0.00 0.00 45.11 3.86
614 624 1.153568 CGAGCGCAGATGGAGGAAA 60.154 57.895 11.47 0.00 0.00 3.13
634 644 3.707640 CTCTCTCCCCTCGCTCCGT 62.708 68.421 0.00 0.00 0.00 4.69
702 712 1.754803 TGTGACCAGAGTCGAACTTGT 59.245 47.619 0.00 0.00 46.74 3.16
711 721 5.268387 AGAATCAGAGTATGTGACCAGAGT 58.732 41.667 0.00 0.00 43.07 3.24
713 723 5.954752 AGAAGAATCAGAGTATGTGACCAGA 59.045 40.000 0.00 0.00 43.07 3.86
715 725 6.401394 CAAGAAGAATCAGAGTATGTGACCA 58.599 40.000 0.00 0.00 43.07 4.02
719 729 5.064452 GCACCAAGAAGAATCAGAGTATGTG 59.936 44.000 0.00 0.00 0.00 3.21
722 732 5.426689 TGCACCAAGAAGAATCAGAGTAT 57.573 39.130 0.00 0.00 0.00 2.12
723 733 4.890158 TGCACCAAGAAGAATCAGAGTA 57.110 40.909 0.00 0.00 0.00 2.59
724 734 3.777106 TGCACCAAGAAGAATCAGAGT 57.223 42.857 0.00 0.00 0.00 3.24
725 735 3.309138 CGATGCACCAAGAAGAATCAGAG 59.691 47.826 0.00 0.00 0.00 3.35
726 736 3.264947 CGATGCACCAAGAAGAATCAGA 58.735 45.455 0.00 0.00 0.00 3.27
727 737 2.223203 GCGATGCACCAAGAAGAATCAG 60.223 50.000 0.00 0.00 0.00 2.90
728 738 1.739466 GCGATGCACCAAGAAGAATCA 59.261 47.619 0.00 0.00 0.00 2.57
729 739 1.064654 GGCGATGCACCAAGAAGAATC 59.935 52.381 0.00 0.00 0.00 2.52
732 742 1.741401 CGGCGATGCACCAAGAAGA 60.741 57.895 0.00 0.00 0.00 2.87
735 745 3.950794 GACCGGCGATGCACCAAGA 62.951 63.158 9.30 0.00 0.00 3.02
736 746 3.499737 GACCGGCGATGCACCAAG 61.500 66.667 9.30 0.00 0.00 3.61
739 749 3.272334 GATGACCGGCGATGCACC 61.272 66.667 9.30 0.00 0.00 5.01
761 771 2.573893 GAAGGGAGGCATGGGGTTCC 62.574 65.000 0.00 0.00 0.00 3.62
801 819 2.745037 GTACACCCGGGTCTGCAA 59.255 61.111 27.51 4.23 0.00 4.08
802 820 3.315949 GGTACACCCGGGTCTGCA 61.316 66.667 27.51 5.95 0.00 4.41
920 944 3.333804 CTTGAACTGAGAGGAAGAAGGC 58.666 50.000 0.00 0.00 0.00 4.35
1467 1501 2.592861 GGCGGTGGCATCAGGATC 60.593 66.667 0.00 0.00 42.47 3.36
1468 1502 4.552365 CGGCGGTGGCATCAGGAT 62.552 66.667 0.00 0.00 42.47 3.24
1528 1562 1.039233 AAACCACAGTTGCTGCTGCT 61.039 50.000 17.00 0.00 39.96 4.24
1584 1618 3.847602 CAGAGAGGGCAGAGCGGG 61.848 72.222 0.00 0.00 0.00 6.13
1585 1619 4.527583 GCAGAGAGGGCAGAGCGG 62.528 72.222 0.00 0.00 0.00 5.52
1586 1620 4.869440 CGCAGAGAGGGCAGAGCG 62.869 72.222 0.00 0.00 39.17 5.03
1721 1771 1.549620 CCAGAGAGACACAGCATGAGT 59.450 52.381 0.00 0.00 44.44 3.41
1727 1777 1.214062 CCGTCCAGAGAGACACAGC 59.786 63.158 0.00 0.00 36.52 4.40
1729 1779 0.469331 AACCCGTCCAGAGAGACACA 60.469 55.000 0.00 0.00 36.52 3.72
1730 1780 0.680061 AAACCCGTCCAGAGAGACAC 59.320 55.000 0.00 0.00 36.52 3.67
1794 1865 4.878397 AGAAACAATCCATGTCCTCGATTC 59.122 41.667 0.00 0.00 42.99 2.52
1799 1870 5.495640 AGAGAAGAAACAATCCATGTCCTC 58.504 41.667 0.00 0.00 42.99 3.71
1812 1883 8.552865 GTTTGAGAGTAGGAAAAGAGAAGAAAC 58.447 37.037 0.00 0.00 0.00 2.78
1814 1885 7.217906 GGTTTGAGAGTAGGAAAAGAGAAGAA 58.782 38.462 0.00 0.00 0.00 2.52
1816 1887 5.935206 GGGTTTGAGAGTAGGAAAAGAGAAG 59.065 44.000 0.00 0.00 0.00 2.85
1817 1888 5.510861 CGGGTTTGAGAGTAGGAAAAGAGAA 60.511 44.000 0.00 0.00 0.00 2.87
1826 1897 2.299297 ACAAGACGGGTTTGAGAGTAGG 59.701 50.000 3.33 0.00 0.00 3.18
1833 1904 2.557317 GTGAAGACAAGACGGGTTTGA 58.443 47.619 3.33 0.00 0.00 2.69
1844 1915 6.126863 AGAGAATATGGTTGGTGAAGACAA 57.873 37.500 0.00 0.00 0.00 3.18
1845 1916 5.762179 AGAGAATATGGTTGGTGAAGACA 57.238 39.130 0.00 0.00 0.00 3.41
1846 1917 5.586643 GGAAGAGAATATGGTTGGTGAAGAC 59.413 44.000 0.00 0.00 0.00 3.01
1870 1941 0.739813 GGTTGATCTTGACCCGACCG 60.740 60.000 0.00 0.00 0.00 4.79
1889 1960 1.002468 CTGAGCACCCAACAAAAGACG 60.002 52.381 0.00 0.00 0.00 4.18
1907 1978 2.547913 TAATTGCGCTGAATGCACTG 57.452 45.000 9.73 0.00 43.10 3.66
2045 2117 3.490759 GGGCTGATGCACGTGACG 61.491 66.667 22.23 2.24 41.91 4.35
2065 2137 6.706270 ACAGGTTATGGTAGATTATTGAAGCG 59.294 38.462 0.00 0.00 0.00 4.68
2124 2196 4.437587 ACAGGATGGCTGGCTGGC 62.438 66.667 11.09 11.09 43.62 4.85
2125 2197 2.124403 GACAGGATGGCTGGCTGG 60.124 66.667 2.00 0.00 44.72 4.85
2133 2205 4.838152 CGCACCGGGACAGGATGG 62.838 72.222 6.32 0.00 43.62 3.51
2134 2206 4.082523 ACGCACCGGGACAGGATG 62.083 66.667 6.32 0.00 46.00 3.51
2135 2207 3.771160 GACGCACCGGGACAGGAT 61.771 66.667 6.32 0.00 34.73 3.24
2136 2208 4.988716 AGACGCACCGGGACAGGA 62.989 66.667 6.32 0.00 34.73 3.86
2137 2209 4.742201 CAGACGCACCGGGACAGG 62.742 72.222 6.32 0.00 37.30 4.00
2138 2210 2.989055 AAACAGACGCACCGGGACAG 62.989 60.000 6.32 0.00 0.00 3.51
2139 2211 2.596553 AAAACAGACGCACCGGGACA 62.597 55.000 6.32 0.00 0.00 4.02
2140 2212 1.890510 AAAACAGACGCACCGGGAC 60.891 57.895 6.32 0.00 0.00 4.46
2141 2213 1.890041 CAAAACAGACGCACCGGGA 60.890 57.895 6.32 0.00 0.00 5.14
2142 2214 2.637025 CAAAACAGACGCACCGGG 59.363 61.111 6.32 0.00 0.00 5.73
2143 2215 2.637025 CCAAAACAGACGCACCGG 59.363 61.111 0.00 0.00 0.00 5.28
2144 2216 2.051345 GCCAAAACAGACGCACCG 60.051 61.111 0.00 0.00 0.00 4.94
2145 2217 1.282875 GAGCCAAAACAGACGCACC 59.717 57.895 0.00 0.00 0.00 5.01
2146 2218 0.380378 TTGAGCCAAAACAGACGCAC 59.620 50.000 0.00 0.00 0.00 5.34
2147 2219 1.098869 TTTGAGCCAAAACAGACGCA 58.901 45.000 0.00 0.00 29.89 5.24
2148 2220 2.202295 TTTTGAGCCAAAACAGACGC 57.798 45.000 8.46 0.00 38.24 5.19
2155 2227 3.004944 GGTATGTCCGTTTTGAGCCAAAA 59.995 43.478 8.46 8.46 40.41 2.44
2156 2228 2.554893 GGTATGTCCGTTTTGAGCCAAA 59.445 45.455 0.00 0.00 0.00 3.28
2157 2229 2.156098 GGTATGTCCGTTTTGAGCCAA 58.844 47.619 0.00 0.00 0.00 4.52
2158 2230 1.072489 TGGTATGTCCGTTTTGAGCCA 59.928 47.619 0.00 0.00 39.52 4.75
2159 2231 1.816074 TGGTATGTCCGTTTTGAGCC 58.184 50.000 0.00 0.00 39.52 4.70
2160 2232 3.561503 GTTTGGTATGTCCGTTTTGAGC 58.438 45.455 0.00 0.00 39.52 4.26
2161 2233 3.364565 CCGTTTGGTATGTCCGTTTTGAG 60.365 47.826 0.00 0.00 39.52 3.02
2162 2234 2.548904 CCGTTTGGTATGTCCGTTTTGA 59.451 45.455 0.00 0.00 39.52 2.69
2163 2235 2.923643 CCGTTTGGTATGTCCGTTTTG 58.076 47.619 0.00 0.00 39.52 2.44
2176 2248 2.590575 ACACGCTGGACCGTTTGG 60.591 61.111 0.00 0.00 39.83 3.28
2177 2249 2.631428 CACACGCTGGACCGTTTG 59.369 61.111 0.00 0.00 39.83 2.93
2178 2250 2.590575 CCACACGCTGGACCGTTT 60.591 61.111 0.00 0.00 43.95 3.60
2179 2251 4.619227 CCCACACGCTGGACCGTT 62.619 66.667 1.15 0.00 43.95 4.44
2183 2255 3.869473 TTACGCCCACACGCTGGAC 62.869 63.158 1.15 0.00 43.95 4.02
2184 2256 2.457743 ATTTACGCCCACACGCTGGA 62.458 55.000 1.15 0.00 43.95 3.86
2185 2257 2.038269 ATTTACGCCCACACGCTGG 61.038 57.895 0.00 0.00 40.26 4.85
2186 2258 1.134487 CATTTACGCCCACACGCTG 59.866 57.895 0.00 0.00 36.19 5.18
2187 2259 2.038269 CCATTTACGCCCACACGCT 61.038 57.895 0.00 0.00 36.19 5.07
2188 2260 2.036006 TCCATTTACGCCCACACGC 61.036 57.895 0.00 0.00 36.19 5.34
2189 2261 0.672401 AGTCCATTTACGCCCACACG 60.672 55.000 0.00 0.00 39.50 4.49
2190 2262 1.530323 AAGTCCATTTACGCCCACAC 58.470 50.000 0.00 0.00 0.00 3.82
2191 2263 2.279935 AAAGTCCATTTACGCCCACA 57.720 45.000 0.00 0.00 0.00 4.17
2192 2264 4.201980 GGATAAAAGTCCATTTACGCCCAC 60.202 45.833 0.00 0.00 38.20 4.61
2193 2265 3.949113 GGATAAAAGTCCATTTACGCCCA 59.051 43.478 0.00 0.00 38.20 5.36
2194 2266 3.002965 CGGATAAAAGTCCATTTACGCCC 59.997 47.826 0.00 0.00 38.21 6.13
2195 2267 3.624410 ACGGATAAAAGTCCATTTACGCC 59.376 43.478 0.00 0.00 38.21 5.68
2196 2268 4.870221 ACGGATAAAAGTCCATTTACGC 57.130 40.909 0.00 0.00 38.21 4.42
2197 2269 7.480542 CAGAAAACGGATAAAAGTCCATTTACG 59.519 37.037 0.00 0.00 32.93 3.18
2198 2270 8.508875 TCAGAAAACGGATAAAAGTCCATTTAC 58.491 33.333 0.00 0.00 32.93 2.01
2199 2271 8.508875 GTCAGAAAACGGATAAAAGTCCATTTA 58.491 33.333 0.00 0.00 32.93 1.40
2200 2272 7.368059 GTCAGAAAACGGATAAAAGTCCATTT 58.632 34.615 0.00 0.00 35.36 2.32
2201 2273 6.072119 GGTCAGAAAACGGATAAAAGTCCATT 60.072 38.462 0.00 0.00 38.21 3.16
2202 2274 5.414765 GGTCAGAAAACGGATAAAAGTCCAT 59.585 40.000 0.00 0.00 38.21 3.41
2203 2275 4.758165 GGTCAGAAAACGGATAAAAGTCCA 59.242 41.667 0.00 0.00 38.21 4.02
2204 2276 4.142966 CGGTCAGAAAACGGATAAAAGTCC 60.143 45.833 0.00 0.00 34.82 3.85
2205 2277 4.668431 GCGGTCAGAAAACGGATAAAAGTC 60.668 45.833 0.00 0.00 0.00 3.01
2206 2278 3.187842 GCGGTCAGAAAACGGATAAAAGT 59.812 43.478 0.00 0.00 0.00 2.66
2207 2279 3.435671 AGCGGTCAGAAAACGGATAAAAG 59.564 43.478 0.00 0.00 0.00 2.27
2208 2280 3.404899 AGCGGTCAGAAAACGGATAAAA 58.595 40.909 0.00 0.00 0.00 1.52
2209 2281 3.048337 AGCGGTCAGAAAACGGATAAA 57.952 42.857 0.00 0.00 0.00 1.40
2210 2282 2.754946 AGCGGTCAGAAAACGGATAA 57.245 45.000 0.00 0.00 0.00 1.75
2211 2283 2.754946 AAGCGGTCAGAAAACGGATA 57.245 45.000 0.00 0.00 0.00 2.59
2212 2284 1.804748 GAAAGCGGTCAGAAAACGGAT 59.195 47.619 0.00 0.00 0.00 4.18
2213 2285 1.223187 GAAAGCGGTCAGAAAACGGA 58.777 50.000 0.00 0.00 0.00 4.69
2214 2286 0.110823 CGAAAGCGGTCAGAAAACGG 60.111 55.000 0.00 0.00 0.00 4.44
2215 2287 0.856641 TCGAAAGCGGTCAGAAAACG 59.143 50.000 0.00 0.00 38.28 3.60
2216 2288 1.070108 GGTCGAAAGCGGTCAGAAAAC 60.070 52.381 0.00 0.00 38.28 2.43
2217 2289 1.223187 GGTCGAAAGCGGTCAGAAAA 58.777 50.000 0.00 0.00 38.28 2.29
2218 2290 0.601841 GGGTCGAAAGCGGTCAGAAA 60.602 55.000 0.00 0.00 38.28 2.52
2219 2291 1.005394 GGGTCGAAAGCGGTCAGAA 60.005 57.895 0.00 0.00 38.28 3.02
2220 2292 1.541310 ATGGGTCGAAAGCGGTCAGA 61.541 55.000 0.00 0.00 38.28 3.27
2221 2293 1.079127 ATGGGTCGAAAGCGGTCAG 60.079 57.895 0.00 0.00 38.28 3.51
2222 2294 1.079405 GATGGGTCGAAAGCGGTCA 60.079 57.895 0.00 0.00 38.28 4.02
2223 2295 1.079405 TGATGGGTCGAAAGCGGTC 60.079 57.895 0.00 0.00 38.28 4.79
2224 2296 1.375523 GTGATGGGTCGAAAGCGGT 60.376 57.895 0.00 0.00 38.28 5.68
2225 2297 2.106683 GGTGATGGGTCGAAAGCGG 61.107 63.158 0.00 0.00 38.28 5.52
2226 2298 2.452813 CGGTGATGGGTCGAAAGCG 61.453 63.158 0.00 0.00 39.35 4.68
2227 2299 2.106683 CCGGTGATGGGTCGAAAGC 61.107 63.158 0.00 0.00 0.00 3.51
2228 2300 2.106683 GCCGGTGATGGGTCGAAAG 61.107 63.158 1.90 0.00 0.00 2.62
2229 2301 2.046700 GCCGGTGATGGGTCGAAA 60.047 61.111 1.90 0.00 0.00 3.46
2230 2302 4.090588 GGCCGGTGATGGGTCGAA 62.091 66.667 1.90 0.00 0.00 3.71
2231 2303 3.665515 TAGGCCGGTGATGGGTCGA 62.666 63.158 1.90 0.00 33.31 4.20
2232 2304 2.644555 CTTAGGCCGGTGATGGGTCG 62.645 65.000 1.90 0.00 33.31 4.79
2233 2305 1.146263 CTTAGGCCGGTGATGGGTC 59.854 63.158 1.90 0.00 0.00 4.46
2234 2306 1.205460 AACTTAGGCCGGTGATGGGT 61.205 55.000 1.90 0.00 0.00 4.51
2235 2307 0.034477 AAACTTAGGCCGGTGATGGG 60.034 55.000 1.90 0.00 0.00 4.00
2236 2308 1.094785 CAAACTTAGGCCGGTGATGG 58.905 55.000 1.90 0.00 0.00 3.51
2237 2309 1.094785 CCAAACTTAGGCCGGTGATG 58.905 55.000 1.90 1.87 0.00 3.07
2238 2310 0.034477 CCCAAACTTAGGCCGGTGAT 60.034 55.000 1.90 0.00 0.00 3.06
2239 2311 1.377229 CCCAAACTTAGGCCGGTGA 59.623 57.895 1.90 0.00 0.00 4.02
2240 2312 2.340328 GCCCAAACTTAGGCCGGTG 61.340 63.158 1.90 0.00 43.76 4.94
2241 2313 2.035155 GCCCAAACTTAGGCCGGT 59.965 61.111 1.90 0.00 43.76 5.28
2246 2318 0.966179 AAAAGCGGCCCAAACTTAGG 59.034 50.000 0.00 0.00 0.00 2.69
2247 2319 3.366985 CCTTAAAAGCGGCCCAAACTTAG 60.367 47.826 0.00 0.00 0.00 2.18
2248 2320 2.559231 CCTTAAAAGCGGCCCAAACTTA 59.441 45.455 0.00 0.00 0.00 2.24
2249 2321 1.343142 CCTTAAAAGCGGCCCAAACTT 59.657 47.619 0.00 0.00 0.00 2.66
2250 2322 0.966179 CCTTAAAAGCGGCCCAAACT 59.034 50.000 0.00 0.00 0.00 2.66
2251 2323 0.677288 ACCTTAAAAGCGGCCCAAAC 59.323 50.000 0.00 0.00 0.00 2.93
2252 2324 0.676736 CACCTTAAAAGCGGCCCAAA 59.323 50.000 0.00 0.00 0.00 3.28
2253 2325 0.178987 TCACCTTAAAAGCGGCCCAA 60.179 50.000 0.00 0.00 0.00 4.12
2254 2326 0.178987 TTCACCTTAAAAGCGGCCCA 60.179 50.000 0.00 0.00 0.00 5.36
2255 2327 0.963225 TTTCACCTTAAAAGCGGCCC 59.037 50.000 0.00 0.00 0.00 5.80
2256 2328 2.400399 GTTTTCACCTTAAAAGCGGCC 58.600 47.619 0.00 0.00 0.00 6.13
2257 2329 2.048498 CGTTTTCACCTTAAAAGCGGC 58.952 47.619 0.00 0.00 36.89 6.53
2258 2330 2.048498 GCGTTTTCACCTTAAAAGCGG 58.952 47.619 6.90 0.00 39.66 5.52
2260 2332 1.450533 GCGCGTTTTCACCTTAAAAGC 59.549 47.619 8.43 0.00 36.87 3.51
2261 2333 2.719046 CTGCGCGTTTTCACCTTAAAAG 59.281 45.455 8.43 0.00 0.00 2.27
2262 2334 2.355132 TCTGCGCGTTTTCACCTTAAAA 59.645 40.909 8.43 0.00 0.00 1.52
2263 2335 1.941294 TCTGCGCGTTTTCACCTTAAA 59.059 42.857 8.43 0.00 0.00 1.52
2264 2336 1.262151 GTCTGCGCGTTTTCACCTTAA 59.738 47.619 8.43 0.00 0.00 1.85
2265 2337 0.863144 GTCTGCGCGTTTTCACCTTA 59.137 50.000 8.43 0.00 0.00 2.69
2266 2338 1.647084 GTCTGCGCGTTTTCACCTT 59.353 52.632 8.43 0.00 0.00 3.50
2267 2339 2.594962 CGTCTGCGCGTTTTCACCT 61.595 57.895 8.43 0.00 0.00 4.00
2268 2340 2.127758 CGTCTGCGCGTTTTCACC 60.128 61.111 8.43 0.00 0.00 4.02
2269 2341 2.127758 CCGTCTGCGCGTTTTCAC 60.128 61.111 8.43 0.00 36.67 3.18
2270 2342 3.342627 CCCGTCTGCGCGTTTTCA 61.343 61.111 8.43 0.00 36.67 2.69
2271 2343 4.736631 GCCCGTCTGCGCGTTTTC 62.737 66.667 8.43 0.00 36.67 2.29
2280 2352 4.039357 ACGTGTCTCGCCCGTCTG 62.039 66.667 0.00 0.00 44.19 3.51
2281 2353 4.039357 CACGTGTCTCGCCCGTCT 62.039 66.667 7.58 0.00 44.19 4.18
2288 2360 1.472276 GGATAAGCGCACGTGTCTCG 61.472 60.000 18.38 13.38 46.00 4.04
2289 2361 0.179134 AGGATAAGCGCACGTGTCTC 60.179 55.000 18.38 6.57 0.00 3.36
2290 2362 0.246635 AAGGATAAGCGCACGTGTCT 59.753 50.000 18.38 11.81 0.00 3.41
2291 2363 0.645868 GAAGGATAAGCGCACGTGTC 59.354 55.000 18.38 9.56 0.00 3.67
2292 2364 0.739813 GGAAGGATAAGCGCACGTGT 60.740 55.000 18.38 0.00 0.00 4.49
2293 2365 1.429148 GGGAAGGATAAGCGCACGTG 61.429 60.000 12.28 12.28 0.00 4.49
2294 2366 1.153429 GGGAAGGATAAGCGCACGT 60.153 57.895 11.47 0.00 0.00 4.49
2295 2367 1.144057 AGGGAAGGATAAGCGCACG 59.856 57.895 11.47 0.00 0.00 5.34
2296 2368 0.815615 CCAGGGAAGGATAAGCGCAC 60.816 60.000 11.47 0.00 0.00 5.34
2297 2369 1.526887 CCAGGGAAGGATAAGCGCA 59.473 57.895 11.47 0.00 0.00 6.09
2298 2370 1.894282 GCCAGGGAAGGATAAGCGC 60.894 63.158 0.00 0.00 0.00 5.92
2299 2371 1.227973 GGCCAGGGAAGGATAAGCG 60.228 63.158 0.00 0.00 0.00 4.68
2300 2372 1.151679 GGGCCAGGGAAGGATAAGC 59.848 63.158 4.39 0.00 0.00 3.09
2301 2373 1.451936 CGGGCCAGGGAAGGATAAG 59.548 63.158 4.39 0.00 0.00 1.73
2302 2374 2.752807 GCGGGCCAGGGAAGGATAA 61.753 63.158 4.39 0.00 0.00 1.75
2303 2375 3.168528 GCGGGCCAGGGAAGGATA 61.169 66.667 4.39 0.00 0.00 2.59
2320 2392 2.908073 GCTTTGTGCCACTGACGGG 61.908 63.158 0.00 0.00 35.15 5.28
2321 2393 2.186160 TGCTTTGTGCCACTGACGG 61.186 57.895 0.00 0.00 42.00 4.79
2322 2394 1.009675 GTGCTTTGTGCCACTGACG 60.010 57.895 0.00 0.00 42.00 4.35
2323 2395 1.360192 GGTGCTTTGTGCCACTGAC 59.640 57.895 0.00 0.00 42.00 3.51
2324 2396 1.827789 GGGTGCTTTGTGCCACTGA 60.828 57.895 0.00 0.00 42.00 3.41
2325 2397 2.730094 GGGTGCTTTGTGCCACTG 59.270 61.111 0.00 0.00 42.00 3.66
2326 2398 2.906897 CGGGTGCTTTGTGCCACT 60.907 61.111 0.00 0.00 42.00 4.00
2327 2399 4.645921 GCGGGTGCTTTGTGCCAC 62.646 66.667 0.00 0.00 42.00 5.01
2345 2417 3.864686 CACGAAATGAGGCGCCGG 61.865 66.667 23.20 0.00 0.00 6.13
2346 2418 4.520846 GCACGAAATGAGGCGCCG 62.521 66.667 23.20 9.85 0.00 6.46
2347 2419 4.179579 GGCACGAAATGAGGCGCC 62.180 66.667 21.89 21.89 0.00 6.53
2348 2420 2.270297 AATGGCACGAAATGAGGCGC 62.270 55.000 0.00 0.00 36.49 6.53
2349 2421 0.171007 AAATGGCACGAAATGAGGCG 59.829 50.000 0.00 0.00 36.49 5.52
2350 2422 1.469767 GGAAATGGCACGAAATGAGGC 60.470 52.381 0.00 0.00 0.00 4.70
2351 2423 1.134946 GGGAAATGGCACGAAATGAGG 59.865 52.381 0.00 0.00 0.00 3.86
2352 2424 1.134946 GGGGAAATGGCACGAAATGAG 59.865 52.381 0.00 0.00 0.00 2.90
2353 2425 1.181786 GGGGAAATGGCACGAAATGA 58.818 50.000 0.00 0.00 0.00 2.57
2354 2426 0.175531 GGGGGAAATGGCACGAAATG 59.824 55.000 0.00 0.00 0.00 2.32
2355 2427 2.590704 GGGGGAAATGGCACGAAAT 58.409 52.632 0.00 0.00 0.00 2.17
2356 2428 4.105388 GGGGGAAATGGCACGAAA 57.895 55.556 0.00 0.00 0.00 3.46
2370 2442 2.534272 TGGGAGAGGGTTTGGGGG 60.534 66.667 0.00 0.00 0.00 5.40
2371 2443 2.763902 GTGGGAGAGGGTTTGGGG 59.236 66.667 0.00 0.00 0.00 4.96
2372 2444 2.351276 CGTGGGAGAGGGTTTGGG 59.649 66.667 0.00 0.00 0.00 4.12
2373 2445 1.003718 GACGTGGGAGAGGGTTTGG 60.004 63.158 0.00 0.00 0.00 3.28
2374 2446 1.003718 GGACGTGGGAGAGGGTTTG 60.004 63.158 0.00 0.00 0.00 2.93
2375 2447 2.222013 GGGACGTGGGAGAGGGTTT 61.222 63.158 0.00 0.00 0.00 3.27
2376 2448 2.606826 GGGACGTGGGAGAGGGTT 60.607 66.667 0.00 0.00 0.00 4.11
2389 2461 4.717313 GAAGGTGGTGGGCGGGAC 62.717 72.222 0.00 0.00 0.00 4.46
2394 2466 4.678743 GGTGGGAAGGTGGTGGGC 62.679 72.222 0.00 0.00 0.00 5.36
2395 2467 2.547595 ATGGTGGGAAGGTGGTGGG 61.548 63.158 0.00 0.00 0.00 4.61
2396 2468 1.304381 CATGGTGGGAAGGTGGTGG 60.304 63.158 0.00 0.00 0.00 4.61
2397 2469 1.304381 CCATGGTGGGAAGGTGGTG 60.304 63.158 2.57 0.00 32.67 4.17
2398 2470 3.180282 CCATGGTGGGAAGGTGGT 58.820 61.111 2.57 0.00 32.67 4.16
2399 2471 2.362889 GCCATGGTGGGAAGGTGG 60.363 66.667 14.67 0.00 38.19 4.61
2400 2472 2.362889 GGCCATGGTGGGAAGGTG 60.363 66.667 14.67 0.00 38.19 4.00
2401 2473 4.047125 CGGCCATGGTGGGAAGGT 62.047 66.667 14.67 0.00 38.19 3.50
2402 2474 3.060614 ATCGGCCATGGTGGGAAGG 62.061 63.158 14.67 0.00 38.19 3.46
2403 2475 1.825191 CATCGGCCATGGTGGGAAG 60.825 63.158 14.67 1.80 38.19 3.46
2404 2476 2.275089 CATCGGCCATGGTGGGAA 59.725 61.111 14.67 0.00 38.19 3.97
2405 2477 4.504596 GCATCGGCCATGGTGGGA 62.505 66.667 14.67 8.75 38.19 4.37
2417 2489 3.649986 GAATTCGGCGGGGCATCG 61.650 66.667 7.21 0.00 0.00 3.84
2418 2490 3.287520 GGAATTCGGCGGGGCATC 61.288 66.667 7.21 0.00 0.00 3.91
2419 2491 4.122149 TGGAATTCGGCGGGGCAT 62.122 61.111 7.21 0.00 0.00 4.40
2420 2492 4.794648 CTGGAATTCGGCGGGGCA 62.795 66.667 7.21 0.00 0.00 5.36
2428 2500 2.247437 GCCTAGCCGCTGGAATTCG 61.247 63.158 5.12 0.00 0.00 3.34
2429 2501 1.894282 GGCCTAGCCGCTGGAATTC 60.894 63.158 5.12 0.00 39.62 2.17
2430 2502 2.193248 GGCCTAGCCGCTGGAATT 59.807 61.111 5.12 0.00 39.62 2.17
2449 2521 4.778143 CCTTTCCGGGCGGGTCAG 62.778 72.222 11.18 7.95 37.00 3.51
2453 2525 4.338710 TTCACCTTTCCGGGCGGG 62.339 66.667 0.00 4.42 36.97 6.13
2454 2526 2.741486 TTCTTCACCTTTCCGGGCGG 62.741 60.000 0.00 1.84 36.97 6.13
2455 2527 1.298859 CTTCTTCACCTTTCCGGGCG 61.299 60.000 0.00 0.00 36.97 6.13
2456 2528 0.960861 CCTTCTTCACCTTTCCGGGC 60.961 60.000 0.00 0.00 36.97 6.13
2457 2529 0.960861 GCCTTCTTCACCTTTCCGGG 60.961 60.000 0.00 0.00 36.97 5.73
2458 2530 1.298859 CGCCTTCTTCACCTTTCCGG 61.299 60.000 0.00 0.00 39.35 5.14
2459 2531 1.298859 CCGCCTTCTTCACCTTTCCG 61.299 60.000 0.00 0.00 0.00 4.30
2460 2532 1.587043 GCCGCCTTCTTCACCTTTCC 61.587 60.000 0.00 0.00 0.00 3.13
2461 2533 1.876664 GCCGCCTTCTTCACCTTTC 59.123 57.895 0.00 0.00 0.00 2.62
2462 2534 1.966451 CGCCGCCTTCTTCACCTTT 60.966 57.895 0.00 0.00 0.00 3.11
2463 2535 2.358737 CGCCGCCTTCTTCACCTT 60.359 61.111 0.00 0.00 0.00 3.50
2464 2536 4.394712 CCGCCGCCTTCTTCACCT 62.395 66.667 0.00 0.00 0.00 4.00
2479 2551 3.248446 TTCTTCGGACCCTTGGCCG 62.248 63.158 0.00 0.00 41.33 6.13
2480 2552 1.377333 CTTCTTCGGACCCTTGGCC 60.377 63.158 0.00 0.00 0.00 5.36
2481 2553 2.041115 GCTTCTTCGGACCCTTGGC 61.041 63.158 0.00 0.00 0.00 4.52
2482 2554 1.377333 GGCTTCTTCGGACCCTTGG 60.377 63.158 0.00 0.00 0.00 3.61
2483 2555 0.902531 TAGGCTTCTTCGGACCCTTG 59.097 55.000 0.00 0.00 31.18 3.61
2484 2556 1.196012 CTAGGCTTCTTCGGACCCTT 58.804 55.000 0.00 0.00 31.18 3.95
2485 2557 0.688087 CCTAGGCTTCTTCGGACCCT 60.688 60.000 0.00 0.00 32.72 4.34
2486 2558 0.976590 ACCTAGGCTTCTTCGGACCC 60.977 60.000 9.30 0.00 0.00 4.46
2487 2559 0.460722 GACCTAGGCTTCTTCGGACC 59.539 60.000 9.30 0.00 0.00 4.46
2488 2560 0.100861 CGACCTAGGCTTCTTCGGAC 59.899 60.000 9.30 0.00 0.00 4.79
2489 2561 2.490165 CGACCTAGGCTTCTTCGGA 58.510 57.895 9.30 0.00 0.00 4.55
2490 2562 1.437986 CCGACCTAGGCTTCTTCGG 59.562 63.158 19.81 19.81 42.98 4.30
2491 2563 0.815734 TTCCGACCTAGGCTTCTTCG 59.184 55.000 9.30 10.26 0.00 3.79
2492 2564 1.471851 GCTTCCGACCTAGGCTTCTTC 60.472 57.143 9.30 0.00 0.00 2.87
2493 2565 0.537653 GCTTCCGACCTAGGCTTCTT 59.462 55.000 9.30 0.00 0.00 2.52
2494 2566 1.331399 GGCTTCCGACCTAGGCTTCT 61.331 60.000 9.30 0.00 34.40 2.85
2495 2567 1.144276 GGCTTCCGACCTAGGCTTC 59.856 63.158 9.30 0.00 34.40 3.86
2496 2568 1.612442 TGGCTTCCGACCTAGGCTT 60.612 57.895 9.30 0.00 37.78 4.35
2497 2569 2.038975 TGGCTTCCGACCTAGGCT 59.961 61.111 9.30 0.00 37.78 4.58
2498 2570 2.187163 GTGGCTTCCGACCTAGGC 59.813 66.667 9.30 0.36 37.45 3.93
2499 2571 2.494918 CGTGGCTTCCGACCTAGG 59.505 66.667 7.41 7.41 0.00 3.02
2500 2572 2.202756 GCGTGGCTTCCGACCTAG 60.203 66.667 0.00 0.00 0.00 3.02
2501 2573 3.766691 GGCGTGGCTTCCGACCTA 61.767 66.667 0.00 0.00 0.00 3.08
2517 2589 3.494336 CTTTGCGAGCTCTGCCGG 61.494 66.667 21.97 0.00 0.00 6.13
2518 2590 1.812922 ATCTTTGCGAGCTCTGCCG 60.813 57.895 21.97 7.96 0.00 5.69
2519 2591 1.712977 CCATCTTTGCGAGCTCTGCC 61.713 60.000 21.97 8.15 0.00 4.85
2520 2592 0.742281 TCCATCTTTGCGAGCTCTGC 60.742 55.000 19.33 19.33 0.00 4.26
2521 2593 1.005340 GTCCATCTTTGCGAGCTCTG 58.995 55.000 12.85 6.68 0.00 3.35
2522 2594 0.459237 CGTCCATCTTTGCGAGCTCT 60.459 55.000 12.85 0.00 0.00 4.09
2523 2595 2.002127 CGTCCATCTTTGCGAGCTC 58.998 57.895 2.73 2.73 0.00 4.09
2524 2596 2.103042 GCGTCCATCTTTGCGAGCT 61.103 57.895 0.00 0.00 0.00 4.09
2525 2597 2.401195 GCGTCCATCTTTGCGAGC 59.599 61.111 0.00 0.00 0.00 5.03
2529 2601 0.451783 AATTCCGCGTCCATCTTTGC 59.548 50.000 4.92 0.00 0.00 3.68
2530 2602 1.202177 CCAATTCCGCGTCCATCTTTG 60.202 52.381 4.92 0.00 0.00 2.77
2531 2603 1.094785 CCAATTCCGCGTCCATCTTT 58.905 50.000 4.92 0.00 0.00 2.52
2532 2604 1.376609 GCCAATTCCGCGTCCATCTT 61.377 55.000 4.92 0.00 0.00 2.40
2533 2605 1.819632 GCCAATTCCGCGTCCATCT 60.820 57.895 4.92 0.00 0.00 2.90
2534 2606 2.715624 GCCAATTCCGCGTCCATC 59.284 61.111 4.92 0.00 0.00 3.51
2535 2607 2.828549 GGCCAATTCCGCGTCCAT 60.829 61.111 4.92 0.00 0.00 3.41
2536 2608 3.851897 TTGGCCAATTCCGCGTCCA 62.852 57.895 16.05 0.00 0.00 4.02
2537 2609 3.051392 CTTGGCCAATTCCGCGTCC 62.051 63.158 20.85 0.00 0.00 4.79
2538 2610 1.582610 TTCTTGGCCAATTCCGCGTC 61.583 55.000 20.85 0.00 0.00 5.19
2539 2611 1.586154 CTTCTTGGCCAATTCCGCGT 61.586 55.000 20.85 0.00 0.00 6.01
2540 2612 1.137404 CTTCTTGGCCAATTCCGCG 59.863 57.895 20.85 6.19 0.00 6.46
2541 2613 0.887933 TTCTTCTTGGCCAATTCCGC 59.112 50.000 20.85 0.00 0.00 5.54
2542 2614 2.436417 TCTTCTTCTTGGCCAATTCCG 58.564 47.619 20.85 7.45 0.00 4.30
2543 2615 3.056536 GGTTCTTCTTCTTGGCCAATTCC 60.057 47.826 20.85 7.32 0.00 3.01
2544 2616 3.366374 CGGTTCTTCTTCTTGGCCAATTC 60.366 47.826 20.85 2.02 0.00 2.17
2545 2617 2.558359 CGGTTCTTCTTCTTGGCCAATT 59.442 45.455 20.85 0.00 0.00 2.32
2546 2618 2.162681 CGGTTCTTCTTCTTGGCCAAT 58.837 47.619 20.85 0.00 0.00 3.16
2547 2619 1.604604 CGGTTCTTCTTCTTGGCCAA 58.395 50.000 19.25 19.25 0.00 4.52
2548 2620 0.250727 CCGGTTCTTCTTCTTGGCCA 60.251 55.000 0.00 0.00 0.00 5.36
2549 2621 0.036306 TCCGGTTCTTCTTCTTGGCC 59.964 55.000 0.00 0.00 0.00 5.36
2550 2622 1.443802 CTCCGGTTCTTCTTCTTGGC 58.556 55.000 0.00 0.00 0.00 4.52
2551 2623 1.339151 CCCTCCGGTTCTTCTTCTTGG 60.339 57.143 0.00 0.00 0.00 3.61
2552 2624 1.946283 GCCCTCCGGTTCTTCTTCTTG 60.946 57.143 0.00 0.00 0.00 3.02
2553 2625 0.325272 GCCCTCCGGTTCTTCTTCTT 59.675 55.000 0.00 0.00 0.00 2.52
2554 2626 1.889530 CGCCCTCCGGTTCTTCTTCT 61.890 60.000 0.00 0.00 0.00 2.85
2555 2627 1.448013 CGCCCTCCGGTTCTTCTTC 60.448 63.158 0.00 0.00 0.00 2.87
2556 2628 2.663196 CGCCCTCCGGTTCTTCTT 59.337 61.111 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.