Multiple sequence alignment - TraesCS5B01G138400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G138400 chr5B 100.000 3116 0 0 1 3116 262356689 262353574 0.000000e+00 5755.0
1 TraesCS5B01G138400 chr5B 79.628 2096 393 26 4 2091 689997378 689995309 0.000000e+00 1474.0
2 TraesCS5B01G138400 chr5D 97.839 2453 48 3 1 2448 241271900 241274352 0.000000e+00 4231.0
3 TraesCS5B01G138400 chr5D 79.867 2111 399 17 1 2107 546688076 546690164 0.000000e+00 1520.0
4 TraesCS5B01G138400 chr5D 89.412 255 15 1 2862 3116 241274846 241275088 8.390000e-81 311.0
5 TraesCS5B01G138400 chr5D 87.097 279 24 2 2482 2751 241274348 241274623 3.900000e-79 305.0
6 TraesCS5B01G138400 chr5D 90.909 66 5 1 2800 2864 241274623 241274688 1.540000e-13 87.9
7 TraesCS5B01G138400 chr5A 97.661 2394 53 2 1 2393 310984823 310987214 0.000000e+00 4108.0
8 TraesCS5B01G138400 chr5A 91.057 738 50 3 2388 3116 310999472 311000202 0.000000e+00 983.0
9 TraesCS5B01G138400 chr4A 79.522 2051 395 18 46 2091 622237648 622235618 0.000000e+00 1437.0
10 TraesCS5B01G138400 chr7D 82.432 74 9 4 2000 2071 448857709 448857780 9.330000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G138400 chr5B 262353574 262356689 3115 True 5755.000 5755 100.00000 1 3116 1 chr5B.!!$R1 3115
1 TraesCS5B01G138400 chr5B 689995309 689997378 2069 True 1474.000 1474 79.62800 4 2091 1 chr5B.!!$R2 2087
2 TraesCS5B01G138400 chr5D 546688076 546690164 2088 False 1520.000 1520 79.86700 1 2107 1 chr5D.!!$F1 2106
3 TraesCS5B01G138400 chr5D 241271900 241275088 3188 False 1233.725 4231 91.31425 1 3116 4 chr5D.!!$F2 3115
4 TraesCS5B01G138400 chr5A 310984823 310987214 2391 False 4108.000 4108 97.66100 1 2393 1 chr5A.!!$F1 2392
5 TraesCS5B01G138400 chr5A 310999472 311000202 730 False 983.000 983 91.05700 2388 3116 1 chr5A.!!$F2 728
6 TraesCS5B01G138400 chr4A 622235618 622237648 2030 True 1437.000 1437 79.52200 46 2091 1 chr4A.!!$R1 2045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 1.213430 TGGCAAGCTGATGATGATGGA 59.787 47.619 0.0 0.0 0.0 3.41 F
1195 1202 1.902508 CTGCTGAGGAAGGTTACAGGA 59.097 52.381 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1858 1865 0.035056 GCACCTGAACCTACAGCCAT 60.035 55.0 0.0 0.0 36.67 4.40 R
2599 2620 0.462047 CTTCCCACACTACATCCCGC 60.462 60.0 0.0 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.213430 TGGCAAGCTGATGATGATGGA 59.787 47.619 0.00 0.00 0.00 3.41
41 42 3.686405 GCTGATGATGATGGAAACTCCCA 60.686 47.826 0.00 0.00 41.05 4.37
160 161 3.077556 CGCTCCTACCAGCCCAGT 61.078 66.667 0.00 0.00 35.84 4.00
410 411 2.113860 TTTGCTGATGGAGTGCTACC 57.886 50.000 0.00 0.00 0.00 3.18
1195 1202 1.902508 CTGCTGAGGAAGGTTACAGGA 59.097 52.381 0.00 0.00 0.00 3.86
1858 1865 3.576861 TCTGGGACAAGAGTTTCAGAGA 58.423 45.455 0.00 0.00 38.70 3.10
2220 2230 1.670674 GGTGCCACTGTGATGCATTTG 60.671 52.381 9.86 0.00 37.34 2.32
2267 2277 4.421948 CGTCTAGGTCATAGTGGTGAAAC 58.578 47.826 0.00 0.00 32.85 2.78
2269 2279 5.411781 GTCTAGGTCATAGTGGTGAAACTG 58.588 45.833 0.00 0.00 32.66 3.16
2270 2280 5.185249 GTCTAGGTCATAGTGGTGAAACTGA 59.815 44.000 0.00 0.00 32.66 3.41
2407 2419 4.326826 TGTTTACTCTGCTCCCATCTTTG 58.673 43.478 0.00 0.00 0.00 2.77
2430 2442 4.430007 CTGGTGATGCCTGATTTTCAATG 58.570 43.478 0.00 0.00 38.33 2.82
2454 2466 7.653647 TGTAGTTTAATGTGAACCACCAAATC 58.346 34.615 0.00 0.00 32.73 2.17
2455 2467 6.723298 AGTTTAATGTGAACCACCAAATCA 57.277 33.333 0.00 0.00 32.73 2.57
2458 2470 6.662865 TTAATGTGAACCACCAAATCATGT 57.337 33.333 0.00 0.00 32.73 3.21
2459 2471 4.524316 ATGTGAACCACCAAATCATGTG 57.476 40.909 0.00 0.00 32.73 3.21
2460 2472 2.035704 TGTGAACCACCAAATCATGTGC 59.964 45.455 0.00 0.00 32.73 4.57
2461 2473 2.297033 GTGAACCACCAAATCATGTGCT 59.703 45.455 0.00 0.00 0.00 4.40
2462 2474 2.557924 TGAACCACCAAATCATGTGCTC 59.442 45.455 0.00 0.00 0.00 4.26
2463 2475 2.592102 ACCACCAAATCATGTGCTCT 57.408 45.000 0.00 0.00 0.00 4.09
2464 2476 2.880443 ACCACCAAATCATGTGCTCTT 58.120 42.857 0.00 0.00 0.00 2.85
2547 2559 8.475639 TCCACATATTTACTTTCAGTCCTAGAC 58.524 37.037 0.00 0.00 0.00 2.59
2599 2620 3.144506 ACAAGATGCTGAAGGTTGTCAG 58.855 45.455 0.00 0.00 46.58 3.51
2603 2624 3.972227 CTGAAGGTTGTCAGCGGG 58.028 61.111 0.00 0.00 38.74 6.13
2606 2627 0.321564 TGAAGGTTGTCAGCGGGATG 60.322 55.000 0.00 0.00 0.00 3.51
2614 2635 0.460284 GTCAGCGGGATGTAGTGTGG 60.460 60.000 0.00 0.00 0.00 4.17
2630 2651 9.601810 ATGTAGTGTGGGAAGAATACTGATATA 57.398 33.333 0.00 0.00 0.00 0.86
2648 2672 7.357429 TGATATAGATCAGCATCCCAGTATG 57.643 40.000 0.00 0.00 37.15 2.39
2649 2673 7.128077 TGATATAGATCAGCATCCCAGTATGA 58.872 38.462 0.00 0.00 35.99 2.15
2651 2675 4.822685 AGATCAGCATCCCAGTATGATC 57.177 45.455 5.55 5.55 44.20 2.92
2668 2692 0.957395 ATCGCTGGAGTTTGCCACAG 60.957 55.000 0.00 0.00 33.52 3.66
2670 2694 1.845809 CGCTGGAGTTTGCCACAGAC 61.846 60.000 0.00 0.00 33.52 3.51
2696 2720 9.547753 CACTCTTACCATACACTAGCAAAATAT 57.452 33.333 0.00 0.00 0.00 1.28
2707 2731 5.121611 CACTAGCAAAATATCCGTGTGTTGA 59.878 40.000 0.00 0.00 0.00 3.18
2741 2765 4.911390 AGTAAGAAATGCCTAAGTGCACT 58.089 39.130 15.25 15.25 45.48 4.40
2744 2768 0.890683 AAATGCCTAAGTGCACTGCC 59.109 50.000 22.49 9.58 45.48 4.85
2751 2775 0.391228 TAAGTGCACTGCCGTTCAGA 59.609 50.000 22.49 0.00 45.72 3.27
2752 2776 0.250467 AAGTGCACTGCCGTTCAGAT 60.250 50.000 22.49 0.00 45.72 2.90
2753 2777 0.250467 AGTGCACTGCCGTTCAGATT 60.250 50.000 20.97 0.00 45.72 2.40
2754 2778 0.593128 GTGCACTGCCGTTCAGATTT 59.407 50.000 10.32 0.00 45.72 2.17
2755 2779 0.874390 TGCACTGCCGTTCAGATTTC 59.126 50.000 8.65 0.00 45.72 2.17
2756 2780 1.160137 GCACTGCCGTTCAGATTTCT 58.840 50.000 8.65 0.00 45.72 2.52
2757 2781 1.135859 GCACTGCCGTTCAGATTTCTG 60.136 52.381 8.65 0.97 45.72 3.02
2758 2782 1.466167 CACTGCCGTTCAGATTTCTGG 59.534 52.381 7.68 0.00 45.72 3.86
2759 2783 1.072331 ACTGCCGTTCAGATTTCTGGT 59.928 47.619 7.68 0.00 45.72 4.00
2760 2784 1.734465 CTGCCGTTCAGATTTCTGGTC 59.266 52.381 7.68 1.40 45.72 4.02
2761 2785 1.087501 GCCGTTCAGATTTCTGGTCC 58.912 55.000 7.68 0.00 43.91 4.46
2762 2786 1.339151 GCCGTTCAGATTTCTGGTCCT 60.339 52.381 7.68 0.00 43.91 3.85
2763 2787 2.876079 GCCGTTCAGATTTCTGGTCCTT 60.876 50.000 7.68 0.00 43.91 3.36
2764 2788 3.003480 CCGTTCAGATTTCTGGTCCTTC 58.997 50.000 7.68 0.00 43.91 3.46
2765 2789 3.557054 CCGTTCAGATTTCTGGTCCTTCA 60.557 47.826 7.68 0.00 43.91 3.02
2766 2790 4.065088 CGTTCAGATTTCTGGTCCTTCAA 58.935 43.478 7.68 0.00 43.91 2.69
2767 2791 4.153117 CGTTCAGATTTCTGGTCCTTCAAG 59.847 45.833 7.68 0.00 43.91 3.02
2768 2792 5.308825 GTTCAGATTTCTGGTCCTTCAAGA 58.691 41.667 7.68 0.00 43.91 3.02
2769 2793 5.768980 TCAGATTTCTGGTCCTTCAAGAT 57.231 39.130 7.68 0.00 43.91 2.40
2770 2794 5.738909 TCAGATTTCTGGTCCTTCAAGATC 58.261 41.667 7.68 0.00 43.91 2.75
2771 2795 5.249163 TCAGATTTCTGGTCCTTCAAGATCA 59.751 40.000 7.68 0.00 43.91 2.92
2772 2796 6.069789 TCAGATTTCTGGTCCTTCAAGATCAT 60.070 38.462 7.68 0.00 43.91 2.45
2773 2797 7.126268 TCAGATTTCTGGTCCTTCAAGATCATA 59.874 37.037 7.68 0.00 43.91 2.15
2774 2798 7.441760 CAGATTTCTGGTCCTTCAAGATCATAG 59.558 40.741 0.00 0.00 40.20 2.23
2775 2799 5.620738 TTCTGGTCCTTCAAGATCATAGG 57.379 43.478 0.00 0.00 0.00 2.57
2776 2800 4.624913 TCTGGTCCTTCAAGATCATAGGT 58.375 43.478 0.00 0.00 0.00 3.08
2777 2801 5.032846 TCTGGTCCTTCAAGATCATAGGTT 58.967 41.667 0.00 0.00 0.00 3.50
2778 2802 5.102953 TGGTCCTTCAAGATCATAGGTTG 57.897 43.478 0.00 0.00 0.00 3.77
2779 2803 4.536090 TGGTCCTTCAAGATCATAGGTTGT 59.464 41.667 0.00 0.00 0.00 3.32
2780 2804 5.014123 TGGTCCTTCAAGATCATAGGTTGTT 59.986 40.000 0.00 0.00 0.00 2.83
2781 2805 5.946377 GGTCCTTCAAGATCATAGGTTGTTT 59.054 40.000 0.00 0.00 0.00 2.83
2782 2806 6.127897 GGTCCTTCAAGATCATAGGTTGTTTG 60.128 42.308 0.00 0.00 0.00 2.93
2783 2807 5.415701 TCCTTCAAGATCATAGGTTGTTTGC 59.584 40.000 0.00 0.00 0.00 3.68
2784 2808 5.416952 CCTTCAAGATCATAGGTTGTTTGCT 59.583 40.000 0.00 0.00 0.00 3.91
2785 2809 6.404074 CCTTCAAGATCATAGGTTGTTTGCTC 60.404 42.308 0.00 0.00 0.00 4.26
2786 2810 5.559770 TCAAGATCATAGGTTGTTTGCTCA 58.440 37.500 0.00 0.00 0.00 4.26
2787 2811 5.412594 TCAAGATCATAGGTTGTTTGCTCAC 59.587 40.000 0.00 0.00 0.00 3.51
2788 2812 4.265073 AGATCATAGGTTGTTTGCTCACC 58.735 43.478 0.00 0.00 0.00 4.02
2789 2813 3.788227 TCATAGGTTGTTTGCTCACCT 57.212 42.857 0.00 0.00 34.79 4.00
2790 2814 4.098914 TCATAGGTTGTTTGCTCACCTT 57.901 40.909 0.00 0.00 32.43 3.50
2791 2815 5.235850 TCATAGGTTGTTTGCTCACCTTA 57.764 39.130 0.00 0.00 32.43 2.69
2792 2816 5.626142 TCATAGGTTGTTTGCTCACCTTAA 58.374 37.500 0.00 0.00 32.43 1.85
2793 2817 5.705441 TCATAGGTTGTTTGCTCACCTTAAG 59.295 40.000 0.00 0.00 32.43 1.85
2794 2818 4.164843 AGGTTGTTTGCTCACCTTAAGA 57.835 40.909 3.36 0.00 0.00 2.10
2795 2819 4.729868 AGGTTGTTTGCTCACCTTAAGAT 58.270 39.130 3.36 0.00 0.00 2.40
2796 2820 5.140454 AGGTTGTTTGCTCACCTTAAGATT 58.860 37.500 3.36 0.00 0.00 2.40
2797 2821 5.598417 AGGTTGTTTGCTCACCTTAAGATTT 59.402 36.000 3.36 0.00 0.00 2.17
2798 2822 6.098266 AGGTTGTTTGCTCACCTTAAGATTTT 59.902 34.615 3.36 0.00 0.00 1.82
2817 2890 8.141835 AGATTTTGGCACACTAAAATTCAAAC 57.858 30.769 2.34 0.00 39.29 2.93
2857 2931 8.856490 AAGTTACACTTCATCACAATCAAAAC 57.144 30.769 0.00 0.00 31.77 2.43
2886 3120 0.179084 ACGTAATGGTCCATCAGGCG 60.179 55.000 4.39 9.79 33.74 5.52
2895 3129 2.632377 GTCCATCAGGCGATCTCAAAA 58.368 47.619 0.00 0.00 33.74 2.44
2900 3134 4.337555 CCATCAGGCGATCTCAAAAGAAAT 59.662 41.667 0.00 0.00 34.49 2.17
3081 3315 4.396166 CAGCGGATCCACAAGAAAAGTTAT 59.604 41.667 13.41 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.319122 GCTGAACATTTCTGTGGGAGTTT 59.681 43.478 0.00 0.00 35.22 2.66
41 42 4.558095 GCTGAACATGCTGAACATTTCTGT 60.558 41.667 0.00 0.00 36.64 3.41
160 161 4.678499 TGTCGCAGCCGTGATGCA 62.678 61.111 13.20 0.00 45.92 3.96
410 411 0.879400 CGCTGCATCAGAGGCCTTAG 60.879 60.000 6.77 2.16 32.44 2.18
895 896 7.283127 GGCAGGAAGTTTGAGATATATTGTTCA 59.717 37.037 0.00 0.00 0.00 3.18
1195 1202 5.674525 TCTTCGAAAATGGCTAGTCATCAT 58.325 37.500 10.93 2.16 0.00 2.45
1622 1629 8.184192 CCAACAATATATTCTCAGGTTTCACAC 58.816 37.037 0.00 0.00 0.00 3.82
1858 1865 0.035056 GCACCTGAACCTACAGCCAT 60.035 55.000 0.00 0.00 36.67 4.40
2085 2092 0.600255 CTTCGTCAAACGGCAGGAGT 60.600 55.000 0.00 0.00 42.81 3.85
2256 2266 6.457663 CGAAAAACATGTCAGTTTCACCACTA 60.458 38.462 20.63 0.00 40.60 2.74
2267 2277 6.183359 CGAAATTAGCACGAAAAACATGTCAG 60.183 38.462 0.00 0.00 0.00 3.51
2269 2279 5.849081 TCGAAATTAGCACGAAAAACATGTC 59.151 36.000 0.00 0.00 33.20 3.06
2270 2280 5.753744 TCGAAATTAGCACGAAAAACATGT 58.246 33.333 0.00 0.00 33.20 3.21
2407 2419 1.820519 TGAAAATCAGGCATCACCAGC 59.179 47.619 0.00 0.00 43.14 4.85
2430 2442 7.653647 TGATTTGGTGGTTCACATTAAACTAC 58.346 34.615 0.38 0.00 37.37 2.73
2464 2476 4.208746 ACGGTATCCCTCAACAACAAAAA 58.791 39.130 0.00 0.00 0.00 1.94
2497 2509 3.181412 ACATGGGGGTCACCAAAACTAAT 60.181 43.478 0.00 0.00 45.13 1.73
2547 2559 4.524714 TGACTTCTAGGAGTTGAGGACTTG 59.475 45.833 4.81 0.00 39.19 3.16
2599 2620 0.462047 CTTCCCACACTACATCCCGC 60.462 60.000 0.00 0.00 0.00 6.13
2603 2624 6.222038 TCAGTATTCTTCCCACACTACATC 57.778 41.667 0.00 0.00 0.00 3.06
2606 2627 9.298250 TCTATATCAGTATTCTTCCCACACTAC 57.702 37.037 0.00 0.00 0.00 2.73
2630 2651 3.195182 CGATCATACTGGGATGCTGATCT 59.805 47.826 10.33 0.00 39.88 2.75
2647 2671 0.955428 GTGGCAAACTCCAGCGATCA 60.955 55.000 0.00 0.00 36.67 2.92
2648 2672 0.955428 TGTGGCAAACTCCAGCGATC 60.955 55.000 0.00 0.00 36.67 3.69
2649 2673 0.957395 CTGTGGCAAACTCCAGCGAT 60.957 55.000 0.00 0.00 36.67 4.58
2651 2675 1.597854 TCTGTGGCAAACTCCAGCG 60.598 57.895 0.00 0.00 36.67 5.18
2668 2692 5.578005 TGCTAGTGTATGGTAAGAGTGTC 57.422 43.478 0.00 0.00 0.00 3.67
2670 2694 7.849804 ATTTTGCTAGTGTATGGTAAGAGTG 57.150 36.000 0.00 0.00 0.00 3.51
2707 2731 5.407502 GCATTTCTTACTTTTTGCCCGTAT 58.592 37.500 0.00 0.00 0.00 3.06
2741 2765 1.610624 GGACCAGAAATCTGAACGGCA 60.611 52.381 11.94 0.00 46.59 5.69
2744 2768 3.664107 TGAAGGACCAGAAATCTGAACG 58.336 45.455 11.94 0.00 46.59 3.95
2750 2774 6.709846 CCTATGATCTTGAAGGACCAGAAATC 59.290 42.308 0.00 0.00 0.00 2.17
2751 2775 6.159398 ACCTATGATCTTGAAGGACCAGAAAT 59.841 38.462 4.78 0.00 33.16 2.17
2752 2776 5.488919 ACCTATGATCTTGAAGGACCAGAAA 59.511 40.000 4.78 0.00 33.16 2.52
2753 2777 5.032846 ACCTATGATCTTGAAGGACCAGAA 58.967 41.667 4.78 0.00 33.16 3.02
2754 2778 4.624913 ACCTATGATCTTGAAGGACCAGA 58.375 43.478 4.78 0.00 33.16 3.86
2755 2779 5.121811 CAACCTATGATCTTGAAGGACCAG 58.878 45.833 4.78 0.00 33.16 4.00
2756 2780 4.536090 ACAACCTATGATCTTGAAGGACCA 59.464 41.667 4.78 0.00 33.16 4.02
2757 2781 5.104259 ACAACCTATGATCTTGAAGGACC 57.896 43.478 4.78 0.00 33.16 4.46
2758 2782 6.623767 GCAAACAACCTATGATCTTGAAGGAC 60.624 42.308 4.78 0.00 33.16 3.85
2759 2783 5.415701 GCAAACAACCTATGATCTTGAAGGA 59.584 40.000 4.78 0.00 33.16 3.36
2760 2784 5.416952 AGCAAACAACCTATGATCTTGAAGG 59.583 40.000 0.00 0.00 35.14 3.46
2761 2785 6.149973 TGAGCAAACAACCTATGATCTTGAAG 59.850 38.462 0.00 0.00 31.11 3.02
2762 2786 6.003326 TGAGCAAACAACCTATGATCTTGAA 58.997 36.000 0.00 0.00 31.11 2.69
2763 2787 5.412594 GTGAGCAAACAACCTATGATCTTGA 59.587 40.000 0.00 0.00 31.11 3.02
2764 2788 5.392380 GGTGAGCAAACAACCTATGATCTTG 60.392 44.000 0.00 0.00 31.11 3.02
2765 2789 4.702131 GGTGAGCAAACAACCTATGATCTT 59.298 41.667 0.00 0.00 31.11 2.40
2766 2790 4.018960 AGGTGAGCAAACAACCTATGATCT 60.019 41.667 0.00 0.00 31.11 2.75
2767 2791 4.265073 AGGTGAGCAAACAACCTATGATC 58.735 43.478 0.00 0.00 0.00 2.92
2768 2792 4.307032 AGGTGAGCAAACAACCTATGAT 57.693 40.909 0.00 0.00 0.00 2.45
2769 2793 3.788227 AGGTGAGCAAACAACCTATGA 57.212 42.857 0.00 0.00 0.00 2.15
2770 2794 5.705441 TCTTAAGGTGAGCAAACAACCTATG 59.295 40.000 1.85 0.00 0.00 2.23
2771 2795 5.876357 TCTTAAGGTGAGCAAACAACCTAT 58.124 37.500 1.85 0.00 0.00 2.57
2772 2796 5.298989 TCTTAAGGTGAGCAAACAACCTA 57.701 39.130 1.85 0.00 0.00 3.08
2773 2797 4.164843 TCTTAAGGTGAGCAAACAACCT 57.835 40.909 1.85 0.00 0.00 3.50
2774 2798 5.453567 AATCTTAAGGTGAGCAAACAACC 57.546 39.130 1.85 0.00 0.00 3.77
2775 2799 6.200854 CCAAAATCTTAAGGTGAGCAAACAAC 59.799 38.462 1.85 0.00 0.00 3.32
2776 2800 6.279882 CCAAAATCTTAAGGTGAGCAAACAA 58.720 36.000 1.85 0.00 0.00 2.83
2777 2801 5.738783 GCCAAAATCTTAAGGTGAGCAAACA 60.739 40.000 1.85 0.00 0.00 2.83
2778 2802 4.686091 GCCAAAATCTTAAGGTGAGCAAAC 59.314 41.667 1.85 0.00 0.00 2.93
2779 2803 4.343526 TGCCAAAATCTTAAGGTGAGCAAA 59.656 37.500 1.85 0.00 0.00 3.68
2780 2804 3.894427 TGCCAAAATCTTAAGGTGAGCAA 59.106 39.130 1.85 0.00 0.00 3.91
2781 2805 3.255642 GTGCCAAAATCTTAAGGTGAGCA 59.744 43.478 1.85 0.58 0.00 4.26
2782 2806 3.255642 TGTGCCAAAATCTTAAGGTGAGC 59.744 43.478 1.85 0.00 0.00 4.26
2783 2807 4.520492 AGTGTGCCAAAATCTTAAGGTGAG 59.480 41.667 1.85 0.00 0.00 3.51
2784 2808 4.469657 AGTGTGCCAAAATCTTAAGGTGA 58.530 39.130 1.85 0.00 0.00 4.02
2785 2809 4.853924 AGTGTGCCAAAATCTTAAGGTG 57.146 40.909 1.85 0.00 0.00 4.00
2786 2810 6.969993 TTTAGTGTGCCAAAATCTTAAGGT 57.030 33.333 1.85 0.00 0.00 3.50
2787 2811 8.831715 AATTTTAGTGTGCCAAAATCTTAAGG 57.168 30.769 1.85 0.00 34.17 2.69
2788 2812 9.474920 TGAATTTTAGTGTGCCAAAATCTTAAG 57.525 29.630 0.00 0.00 34.17 1.85
2789 2813 9.823647 TTGAATTTTAGTGTGCCAAAATCTTAA 57.176 25.926 0.00 0.00 34.17 1.85
2790 2814 9.823647 TTTGAATTTTAGTGTGCCAAAATCTTA 57.176 25.926 0.00 0.00 34.17 2.10
2791 2815 8.611757 GTTTGAATTTTAGTGTGCCAAAATCTT 58.388 29.630 0.00 0.00 34.17 2.40
2792 2816 7.768120 TGTTTGAATTTTAGTGTGCCAAAATCT 59.232 29.630 0.00 0.00 34.17 2.40
2793 2817 7.914465 TGTTTGAATTTTAGTGTGCCAAAATC 58.086 30.769 0.00 0.00 34.17 2.17
2794 2818 7.856145 TGTTTGAATTTTAGTGTGCCAAAAT 57.144 28.000 0.00 0.00 36.22 1.82
2795 2819 7.856145 ATGTTTGAATTTTAGTGTGCCAAAA 57.144 28.000 0.00 0.00 0.00 2.44
2796 2820 8.200792 ACTATGTTTGAATTTTAGTGTGCCAAA 58.799 29.630 0.00 0.00 0.00 3.28
2797 2821 7.721402 ACTATGTTTGAATTTTAGTGTGCCAA 58.279 30.769 0.00 0.00 0.00 4.52
2798 2822 7.283625 ACTATGTTTGAATTTTAGTGTGCCA 57.716 32.000 0.00 0.00 0.00 4.92
2857 2931 9.140286 CTGATGGACCATTACGTAATGTATTAG 57.860 37.037 34.56 25.19 41.04 1.73
2873 3107 0.687427 TGAGATCGCCTGATGGACCA 60.687 55.000 0.00 0.00 34.09 4.02
2886 3120 7.914346 CAGCCAGATTACATTTCTTTTGAGATC 59.086 37.037 0.00 0.00 0.00 2.75
2895 3129 4.922206 TGGTTCAGCCAGATTACATTTCT 58.078 39.130 0.00 0.00 43.61 2.52
2943 3177 5.002516 TGTTGCTCATGTGTGATCATGTTA 58.997 37.500 0.00 0.00 43.70 2.41
2959 3193 3.060473 GTGTGACTACGTTCTTGTTGCTC 60.060 47.826 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.