AutoCloner

Multiple sequence alignment - TraesCS5B01G138100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G138100	chr5B	100.000	4520	0	0	1	4520	262058386	262053867	0.000000e+00	8347.0
1	TraesCS5B01G138100	chr5A	96.132	3283	79	19	417	3662	311280061	311283332	0.000000e+00	5315.0
2	TraesCS5B01G138100	chr5A	96.783	746	20	2	3775	4520	670401075	670400334	0.000000e+00	1242.0
3	TraesCS5B01G138100	chr5A	89.136	718	69	8	3663	4376	122997057	122996345	0.000000e+00	885.0
4	TraesCS5B01G138100	chr5A	85.387	349	45	3	1	347	311278429	311278773	1.550000e-94	357.0
5	TraesCS5B01G138100	chr5D	96.849	3142	54	9	550	3662	241664676	241667801	0.000000e+00	5212.0
6	TraesCS5B01G138100	chr5D	84.099	566	70	11	1	561	241663947	241664497	3.100000e-146	529.0
7	TraesCS5B01G138100	chr7B	97.100	862	24	1	3660	4520	126028532	126029393	0.000000e+00	1452.0
8	TraesCS5B01G138100	chr7B	87.342	79	7	3	3658	3734	391952992	391953069	2.240000e-13	87.9
9	TraesCS5B01G138100	chr4A	95.179	809	33	3	3715	4520	69274526	69275331	0.000000e+00	1273.0
10	TraesCS5B01G138100	chr4A	93.147	788	44	7	3660	4440	379467058	379467842	0.000000e+00	1147.0
11	TraesCS5B01G138100	chr4A	91.463	82	5	2	3659	3738	323855492	323855573	1.330000e-20	111.0
12	TraesCS5B01G138100	chr1D	92.750	869	54	7	3657	4519	417776275	417775410	0.000000e+00	1247.0
13	TraesCS5B01G138100	chr1D	79.083	349	61	12	2	345	373118651	373118992	3.520000e-56	230.0
14	TraesCS5B01G138100	chr1D	78.662	314	50	13	24	333	397982771	397983071	4.610000e-45	193.0
15	TraesCS5B01G138100	chr3A	95.352	710	29	3	3814	4520	679688010	679688718	0.000000e+00	1125.0
16	TraesCS5B01G138100	chr3A	93.151	73	3	2	3660	3730	679672819	679672891	6.180000e-19	106.0
17	TraesCS5B01G138100	chr2B	88.843	726	74	5	3800	4520	770768892	770768169	0.000000e+00	885.0
18	TraesCS5B01G138100	chr2B	76.892	502	96	15	1	488	422511928	422512423	2.680000e-67	267.0
19	TraesCS5B01G138100	chr2D	87.500	688	67	11	3776	4452	346152706	346153385	0.000000e+00	776.0
20	TraesCS5B01G138100	chr2D	77.159	359	71	6	79	436	296855034	296855382	9.920000e-47	198.0
21	TraesCS5B01G138100	chr2A	78.125	480	89	8	1	468	474808213	474808688	1.590000e-74	291.0
22	TraesCS5B01G138100	chr4D	76.923	455	81	16	3	443	8152132	8152576	2.100000e-58	237.0
23	TraesCS5B01G138100	chr6B	80.769	260	44	3	76	333	670905436	670905691	9.920000e-47	198.0
24	TraesCS5B01G138100	chr1B	90.625	64	6	0	3707	3770	52492686	52492623	8.060000e-13	86.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G138100	chr5B	262053867	262058386	4519	True	8347.0	8347	100.0000	1	4520	1	chr5B.!!$R1	4519
1	TraesCS5B01G138100	chr5A	311278429	311283332	4903	False	2836.0	5315	90.7595	1	3662	2	chr5A.!!$F1	3661
2	TraesCS5B01G138100	chr5A	670400334	670401075	741	True	1242.0	1242	96.7830	3775	4520	1	chr5A.!!$R2	745
3	TraesCS5B01G138100	chr5A	122996345	122997057	712	True	885.0	885	89.1360	3663	4376	1	chr5A.!!$R1	713
4	TraesCS5B01G138100	chr5D	241663947	241667801	3854	False	2870.5	5212	90.4740	1	3662	2	chr5D.!!$F1	3661
5	TraesCS5B01G138100	chr7B	126028532	126029393	861	False	1452.0	1452	97.1000	3660	4520	1	chr7B.!!$F1	860
6	TraesCS5B01G138100	chr4A	69274526	69275331	805	False	1273.0	1273	95.1790	3715	4520	1	chr4A.!!$F1	805
7	TraesCS5B01G138100	chr4A	379467058	379467842	784	False	1147.0	1147	93.1470	3660	4440	1	chr4A.!!$F3	780
8	TraesCS5B01G138100	chr1D	417775410	417776275	865	True	1247.0	1247	92.7500	3657	4519	1	chr1D.!!$R1	862
9	TraesCS5B01G138100	chr3A	679688010	679688718	708	False	1125.0	1125	95.3520	3814	4520	1	chr3A.!!$F2	706
10	TraesCS5B01G138100	chr2B	770768169	770768892	723	True	885.0	885	88.8430	3800	4520	1	chr2B.!!$R1	720
11	TraesCS5B01G138100	chr2D	346152706	346153385	679	False	776.0	776	87.5000	3776	4452	1	chr2D.!!$F2	676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
400	1641	0.040646	AGTGGTGGATCGGTGGTCTA	59.959	55.000	0.00	2.59	F
414	1655	0.179142	GGTCTAGAAACCTCGACGGC	60.179	60.000	36.32	5.68	F
680	2123	0.244721	GAAAACCCTCACATGCAGGC	59.755	55.000	0.00	4.85	F
1171	2637	0.733150	CAGCGTCAGTCCGTGATCTA	59.267	55.000	37.56	1.98	F
2229	3711	1.003580	GAGCCTGATGACTGGGTTGAA	59.996	52.381	43.79	2.69	F
3300	4782	1.075536	TGTGAGGGCTCAGACAGAGTA	59.924	52.381	46.47	2.59	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2326	3808	0.822121	ACCCCAGTTGTTCCTTTCGC	60.822	55.000	0.00	0.00	0.00	4.70	R
2556	4038	0.326143	TATGGTACTGCTGGCTCCCA	60.326	55.000	0.00	0.00	0.00	4.37	R
2618	4100	3.756434	TGCTGCAAAGTAAAGATGGTACC	59.244	43.478	4.43	4.43	0.00	3.34	R
3210	4692	1.040893	TACGCTGGTCATCATCCCGT	61.041	55.000	0.00	0.00	0.00	5.28	R
3438	4920	0.615331	GGAGCCATCCACTGTCTTCA	59.385	55.000	0.00	0.00	45.87	3.02	R
4164	5730	1.407618	ACATATACTCAGTTGGCGCGA	59.592	47.619	12.10	0.00	0.00	5.87	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	5.282510	CCTCCGCTCATGTTAGTAGTTTAG	58.717	45.833	0.00	0.00	0.00	1.85
29	30	6.696148	CGCTCATGTTAGTAGTTTAGGTTAGG	59.304	42.308	0.00	0.00	0.00	2.69
78	81	2.040544	CGGATGGCGGCACTTCTTT	61.041	57.895	16.34	0.00	0.00	2.52
96	99	3.558418	TCTTTTTCGAGTTTGTCTTCCGG	59.442	43.478	0.00	0.00	0.00	5.14
97	100	1.223187	TTTCGAGTTTGTCTTCCGGC	58.777	50.000	0.00	0.00	0.00	6.13
100	103	1.291877	CGAGTTTGTCTTCCGGCCTG	61.292	60.000	0.00	0.00	0.00	4.85
117	120	2.485814	GCCTGCGATTCTTCTTGAGTTT	59.514	45.455	0.00	0.00	0.00	2.66
126	129	5.890424	TTCTTCTTGAGTTTGTCCGTTTT	57.110	34.783	0.00	0.00	0.00	2.43
146	149	3.228499	ACGTAGTCGACAGAGCTCA	57.772	52.632	19.50	0.00	29.74	4.26
153	156	0.748367	TCGACAGAGCTCAGGCGTAT	60.748	55.000	30.36	0.00	44.37	3.06
194	197	3.414486	CGTGAGGTTGGGGTTTCTT	57.586	52.632	0.00	0.00	0.00	2.52
234	237	6.808321	TGGTGTTAGGTGCTTTAGATCTAT	57.192	37.500	2.58	0.00	0.00	1.98
235	238	7.907841	TGGTGTTAGGTGCTTTAGATCTATA	57.092	36.000	2.58	0.00	0.00	1.31
308	311	1.334149	GGCACGTGCAGAAAGACTTTC	60.334	52.381	38.60	18.49	44.36	2.62
338	341	1.035139	CAACAAGGTCAAGCTGGCTT	58.965	50.000	1.60	1.60	36.60	4.35
347	350	1.918800	AAGCTGGCTTCGGTAGGGT	60.919	57.895	1.60	0.00	0.00	4.34
348	351	1.489560	AAGCTGGCTTCGGTAGGGTT	61.490	55.000	1.60	0.00	0.00	4.11
350	353	1.677552	CTGGCTTCGGTAGGGTTGT	59.322	57.895	0.00	0.00	0.00	3.32
358	1589	3.116531	GTAGGGTTGTGGCGCGTC	61.117	66.667	2.29	2.29	0.00	5.19
378	1619	4.659088	GTCGATGACTCGTTCTAACATCA	58.341	43.478	0.00	0.00	45.25	3.07
379	1620	4.731000	GTCGATGACTCGTTCTAACATCAG	59.269	45.833	0.00	0.00	45.25	2.90
380	1621	4.395231	TCGATGACTCGTTCTAACATCAGT	59.605	41.667	0.00	0.00	45.25	3.41
381	1622	5.583457	TCGATGACTCGTTCTAACATCAGTA	59.417	40.000	0.00	0.00	45.25	2.74
382	1623	5.904630	CGATGACTCGTTCTAACATCAGTAG	59.095	44.000	0.00	0.00	40.07	2.57
383	1624	6.457122	CGATGACTCGTTCTAACATCAGTAGT	60.457	42.308	0.00	0.00	40.07	2.73
384	1625	5.939457	TGACTCGTTCTAACATCAGTAGTG	58.061	41.667	0.00	0.00	0.00	2.74
385	1626	5.106277	TGACTCGTTCTAACATCAGTAGTGG	60.106	44.000	0.00	0.00	0.00	4.00
386	1627	4.765856	ACTCGTTCTAACATCAGTAGTGGT	59.234	41.667	0.00	0.00	0.00	4.16
387	1628	5.055642	TCGTTCTAACATCAGTAGTGGTG	57.944	43.478	9.36	9.36	41.05	4.17
389	1630	4.082408	CGTTCTAACATCAGTAGTGGTGGA	60.082	45.833	15.24	0.30	39.36	4.02
400	1641	0.040646	AGTGGTGGATCGGTGGTCTA	59.959	55.000	0.00	0.00	0.00	2.59
401	1642	0.460311	GTGGTGGATCGGTGGTCTAG	59.540	60.000	0.00	0.00	0.00	2.43
405	1646	2.418334	GGTGGATCGGTGGTCTAGAAAC	60.418	54.545	0.00	0.00	0.00	2.78
411	1652	1.135460	CGGTGGTCTAGAAACCTCGAC	60.135	57.143	18.95	4.61	40.20	4.20
413	1654	1.135460	GTGGTCTAGAAACCTCGACGG	60.135	57.143	0.00	0.03	40.20	4.79
414	1655	0.179142	GGTCTAGAAACCTCGACGGC	60.179	60.000	0.00	0.00	36.32	5.68
420	1661	0.446616	GAAACCTCGACGGCATTTCC	59.553	55.000	0.00	0.00	35.61	3.13
422	1663	0.953960	AACCTCGACGGCATTTCCAC	60.954	55.000	0.00	0.00	35.61	4.02
426	1667	2.128035	CTCGACGGCATTTCCACTATC	58.872	52.381	0.00	0.00	34.01	2.08
435	1676	5.277683	CGGCATTTCCACTATCTTTGAGATG	60.278	44.000	0.82	0.00	33.86	2.90
446	1687	8.549548	CACTATCTTTGAGATGCTCTGTATTTG	58.450	37.037	0.82	0.00	35.37	2.32
448	1689	5.188434	TCTTTGAGATGCTCTGTATTTGGG	58.812	41.667	0.00	0.00	0.00	4.12
458	1699	6.977213	TGCTCTGTATTTGGGTAAACTTTTC	58.023	36.000	0.00	0.00	0.00	2.29
461	1702	8.235226	GCTCTGTATTTGGGTAAACTTTTCTAC	58.765	37.037	0.00	0.00	0.00	2.59
516	1757	1.458445	CATATCACGGCGCAGATGAAG	59.542	52.381	16.26	9.89	0.00	3.02
680	2123	0.244721	GAAAACCCTCACATGCAGGC	59.755	55.000	0.00	0.00	0.00	4.85
1171	2637	0.733150	CAGCGTCAGTCCGTGATCTA	59.267	55.000	0.00	0.00	37.56	1.98
1270	2740	9.605275	CTCAGAAATCAAATAGATAGTTCACCA	57.395	33.333	0.00	0.00	35.39	4.17
1297	2779	5.486526	ACTCAATCACTTGACATCTTCTCC	58.513	41.667	0.00	0.00	36.46	3.71
1617	3099	1.801332	CGTGTACCAGGAGGAGTCG	59.199	63.158	0.00	0.00	38.69	4.18
1677	3159	4.966787	GGGCACAAGTTCCCGCCA	62.967	66.667	8.55	0.00	46.75	5.69
1917	3399	1.736681	GTTTCTGATGCAGCAGAGTCC	59.263	52.381	31.15	19.96	44.93	3.85
2043	3525	3.052414	TCCCTGGTGGTGATAAGCTAGTA	60.052	47.826	0.00	0.00	34.77	1.82
2093	3575	1.068679	GCCTCAAGAAGCAGTGAAAGC	60.069	52.381	0.00	0.00	0.00	3.51
2205	3687	7.889469	ACATTAAACAATCTGCATTCTGTTCT	58.111	30.769	7.61	3.09	30.93	3.01
2220	3702	3.118847	TCTGTTCTGATGAGCCTGATGAC	60.119	47.826	0.00	0.00	0.00	3.06
2229	3711	1.003580	GAGCCTGATGACTGGGTTGAA	59.996	52.381	0.00	0.00	43.79	2.69
2238	3720	4.647424	TGACTGGGTTGAAATGTTTGAC	57.353	40.909	0.00	0.00	0.00	3.18
2321	3803	3.438434	GCTTCCAAGAATTCTCAGGTCAC	59.562	47.826	20.37	11.01	0.00	3.67
2326	3808	4.694509	CCAAGAATTCTCAGGTCACTCAAG	59.305	45.833	8.78	0.00	0.00	3.02
2618	4100	1.429148	GCGTCCGACATGCTTAAGGG	61.429	60.000	4.29	0.00	33.71	3.95
3006	4488	5.951747	AGTGGTGATTGTTAATTGCCTGTAT	59.048	36.000	0.00	0.00	0.00	2.29
3300	4782	1.075536	TGTGAGGGCTCAGACAGAGTA	59.924	52.381	0.00	0.00	46.47	2.59
3315	4797	3.194861	CAGAGTAGAGAGACCAGAGACG	58.805	54.545	0.00	0.00	0.00	4.18
3333	4815	3.994392	AGACGTATAAACAGTGGCAAGTG	59.006	43.478	0.00	0.00	0.00	3.16
3543	5025	4.991153	TCTTCGTCTGCATGTCTCTTAT	57.009	40.909	0.00	0.00	0.00	1.73
3605	5087	2.371841	CCAAGGTATGCACTGGGCTATA	59.628	50.000	2.50	0.00	45.15	1.31
4098	5585	1.163420	ACATTGTCGCGCCAACTGAA	61.163	50.000	4.03	0.00	0.00	3.02
4141	5628	6.636454	AGTCCTCCCAACTAAACATCAATA	57.364	37.500	0.00	0.00	0.00	1.90
4488	6065	6.690194	ATGCAATCTCATAGGAAGTTGAAC	57.310	37.500	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
23	24	4.964593	TGTGAGGACTACAAAACCTAACC	58.035	43.478	0.00	0.00	35.03	2.85
29	30	2.548480	GCACCTGTGAGGACTACAAAAC	59.452	50.000	0.51	0.00	37.67	2.43
34	35	1.446272	GCGCACCTGTGAGGACTAC	60.446	63.158	0.30	0.00	37.67	2.73
78	81	1.223187	GCCGGAAGACAAACTCGAAA	58.777	50.000	5.05	0.00	0.00	3.46
96	99	1.731720	ACTCAAGAAGAATCGCAGGC	58.268	50.000	0.00	0.00	0.00	4.85
97	100	3.499918	ACAAACTCAAGAAGAATCGCAGG	59.500	43.478	0.00	0.00	0.00	4.85
100	103	3.423645	CGGACAAACTCAAGAAGAATCGC	60.424	47.826	0.00	0.00	0.00	4.58
126	129	1.077123	GAGCTCTGTCGACTACGTCA	58.923	55.000	17.92	0.00	40.69	4.35
153	156	1.140852	CCCAAGGAGGCGTCATGAATA	59.859	52.381	8.91	0.00	35.39	1.75
175	178	0.179001	AAGAAACCCCAACCTCACGG	60.179	55.000	0.00	0.00	0.00	4.94
176	179	0.951558	CAAGAAACCCCAACCTCACG	59.048	55.000	0.00	0.00	0.00	4.35
185	188	0.603065	GCCACATGACAAGAAACCCC	59.397	55.000	0.00	0.00	0.00	4.95
194	197	1.271325	ACCAAATCTCGCCACATGACA	60.271	47.619	0.00	0.00	0.00	3.58
234	237	6.035975	TCGTCGTCGTTGAACTCTTGTATATA	59.964	38.462	1.33	0.00	38.33	0.86
235	238	5.026462	CGTCGTCGTTGAACTCTTGTATAT	58.974	41.667	0.00	0.00	0.00	0.86
244	247	0.933509	GCAGTCGTCGTCGTTGAACT	60.934	55.000	1.33	0.00	38.33	3.01
275	278	2.291043	CGTGCCCCTAAGGACCAGT	61.291	63.158	0.00	0.00	38.24	4.00
308	311	1.808945	GACCTTGTTGATGACAGCTGG	59.191	52.381	19.93	0.00	39.94	4.85
338	341	4.382320	GCGCCACAACCCTACCGA	62.382	66.667	0.00	0.00	0.00	4.69
347	350	3.109547	GTCATCGACGCGCCACAA	61.110	61.111	5.73	0.00	0.00	3.33
348	351	3.964221	GAGTCATCGACGCGCCACA	62.964	63.158	5.73	0.00	37.67	4.17
378	1619	0.252103	ACCACCGATCCACCACTACT	60.252	55.000	0.00	0.00	0.00	2.57
379	1620	0.175073	GACCACCGATCCACCACTAC	59.825	60.000	0.00	0.00	0.00	2.73
380	1621	0.040646	AGACCACCGATCCACCACTA	59.959	55.000	0.00	0.00	0.00	2.74
381	1622	0.040646	TAGACCACCGATCCACCACT	59.959	55.000	0.00	0.00	0.00	4.00
382	1623	0.460311	CTAGACCACCGATCCACCAC	59.540	60.000	0.00	0.00	0.00	4.16
383	1624	0.333652	TCTAGACCACCGATCCACCA	59.666	55.000	0.00	0.00	0.00	4.17
384	1625	1.481871	TTCTAGACCACCGATCCACC	58.518	55.000	0.00	0.00	0.00	4.61
385	1626	2.418334	GGTTTCTAGACCACCGATCCAC	60.418	54.545	4.79	0.00	39.57	4.02
386	1627	1.829222	GGTTTCTAGACCACCGATCCA	59.171	52.381	4.79	0.00	39.57	3.41
387	1628	2.101082	GAGGTTTCTAGACCACCGATCC	59.899	54.545	12.71	0.00	42.35	3.36
389	1630	1.749634	CGAGGTTTCTAGACCACCGAT	59.250	52.381	12.71	0.00	42.35	4.18
400	1641	1.439679	GAAATGCCGTCGAGGTTTCT	58.560	50.000	4.18	0.00	43.70	2.52
401	1642	0.446616	GGAAATGCCGTCGAGGTTTC	59.553	55.000	4.18	7.59	43.70	2.78
405	1646	0.174845	TAGTGGAAATGCCGTCGAGG	59.825	55.000	0.00	0.00	44.97	4.63
411	1652	4.191544	TCTCAAAGATAGTGGAAATGCCG	58.808	43.478	0.00	0.00	40.66	5.69
413	1654	5.298777	AGCATCTCAAAGATAGTGGAAATGC	59.701	40.000	0.00	0.00	32.12	3.56
414	1655	6.939132	AGCATCTCAAAGATAGTGGAAATG	57.061	37.500	0.00	0.00	32.12	2.32
435	1676	7.215719	AGAAAAGTTTACCCAAATACAGAGC	57.784	36.000	0.00	0.00	0.00	4.09
486	1727	2.375146	GCCGTGATATGGAAACCCTTT	58.625	47.619	0.00	0.00	0.00	3.11
490	1731	1.092921	TGCGCCGTGATATGGAAACC	61.093	55.000	4.18	0.00	0.00	3.27
495	1736	0.319813	TCATCTGCGCCGTGATATGG	60.320	55.000	4.18	0.00	0.00	2.74
498	1739	0.249447	CCTTCATCTGCGCCGTGATA	60.249	55.000	4.18	0.00	0.00	2.15
516	1757	2.126189	GCACGACCTACACCGTCC	60.126	66.667	0.00	0.00	36.83	4.79
680	2123	1.153369	AACCTCGATGATGGTGGCG	60.153	57.895	0.00	0.00	36.57	5.69
740	2190	4.802051	CCCGTGATGGTGGCTGGG	62.802	72.222	0.00	0.00	35.15	4.45
990	2456	2.969238	GATGTCATCGCCTGCCCG	60.969	66.667	0.00	0.00	0.00	6.13
991	2457	2.969238	CGATGTCATCGCCTGCCC	60.969	66.667	21.42	0.00	46.55	5.36
1171	2637	2.665000	CTGGTGGCGATGACAGGT	59.335	61.111	0.00	0.00	0.00	4.00
1270	2740	6.769822	AGAAGATGTCAAGTGATTGAGTTTGT	59.230	34.615	0.00	0.00	0.00	2.83
1297	2779	5.191426	ACATCATGGAATTCTTCAGTCAGG	58.809	41.667	5.23	0.00	0.00	3.86
2043	3525	4.768968	ACACCAGCAGCTTCTAAATCAATT	59.231	37.500	0.00	0.00	0.00	2.32
2093	3575	3.119245	CCTGCTGACATTGAAAGGAATGG	60.119	47.826	0.00	0.00	37.60	3.16
2205	3687	0.835276	CCCAGTCATCAGGCTCATCA	59.165	55.000	0.00	0.00	0.00	3.07
2220	3702	3.980646	TCGTCAAACATTTCAACCCAG	57.019	42.857	0.00	0.00	0.00	4.45
2238	3720	6.467682	TCTTTTCAGTTTGACGAAACAAATCG	59.532	34.615	2.97	0.00	43.51	3.34
2321	3803	2.031682	CCAGTTGTTCCTTTCGCTTGAG	60.032	50.000	0.00	0.00	0.00	3.02
2326	3808	0.822121	ACCCCAGTTGTTCCTTTCGC	60.822	55.000	0.00	0.00	0.00	4.70
2556	4038	0.326143	TATGGTACTGCTGGCTCCCA	60.326	55.000	0.00	0.00	0.00	4.37
2618	4100	3.756434	TGCTGCAAAGTAAAGATGGTACC	59.244	43.478	4.43	4.43	0.00	3.34
2721	4203	6.316319	GCCAAAATAAATGCCAAAGTCAATG	58.684	36.000	0.00	0.00	0.00	2.82
3006	4488	7.646446	TTCGTCAATAAGATTTCTGAAACGA	57.354	32.000	4.73	4.66	0.00	3.85
3210	4692	1.040893	TACGCTGGTCATCATCCCGT	61.041	55.000	0.00	0.00	0.00	5.28
3300	4782	5.498393	TGTTTATACGTCTCTGGTCTCTCT	58.502	41.667	0.00	0.00	0.00	3.10
3315	4797	4.575885	TCCTCACTTGCCACTGTTTATAC	58.424	43.478	0.00	0.00	0.00	1.47
3333	4815	0.985490	ATCCAGCCCTCAGGTTCCTC	60.985	60.000	0.00	0.00	34.57	3.71
3438	4920	0.615331	GGAGCCATCCACTGTCTTCA	59.385	55.000	0.00	0.00	45.87	3.02
3543	5025	2.040278	AGCTCTGCCTTCAACAATGGTA	59.960	45.455	0.00	0.00	0.00	3.25
3925	5412	3.982058	CGCGGTTTAGAGGATATGTCTTC	59.018	47.826	0.00	0.00	0.00	2.87
4020	5507	4.418392	GAAGACTAGTTCGCCGAAACATA	58.582	43.478	0.00	0.00	0.00	2.29
4098	5585	5.125417	GGACTATTTTGGCACACACATATGT	59.875	40.000	1.41	1.41	39.29	2.29
4141	5628	7.426410	CGATAATGTAGTCTAGTTCCACACAT	58.574	38.462	0.00	0.00	0.00	3.21
4164	5730	1.407618	ACATATACTCAGTTGGCGCGA	59.592	47.619	12.10	0.00	0.00	5.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.