Multiple sequence alignment - TraesCS5B01G137500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G137500 chr5B 100.000 2315 0 0 1 2315 257533924 257531610 0.000000e+00 4276
1 TraesCS5B01G137500 chr5B 95.442 373 15 1 1945 2315 257336062 257335690 5.510000e-166 593
2 TraesCS5B01G137500 chr3B 95.586 1654 33 24 1 1638 739939849 739938220 0.000000e+00 2614
3 TraesCS5B01G137500 chr3B 95.229 1069 21 9 594 1638 398845734 398846796 0.000000e+00 1664
4 TraesCS5B01G137500 chr3B 95.229 545 22 4 1 543 398845266 398845808 0.000000e+00 859
5 TraesCS5B01G137500 chr3B 96.884 353 5 6 1602 1952 739938140 739937792 9.220000e-164 586
6 TraesCS5B01G137500 chr3B 96.307 352 8 5 1601 1952 398846884 398847230 7.170000e-160 573
7 TraesCS5B01G137500 chr1A 95.647 1654 24 14 1 1638 350417696 350416075 0.000000e+00 2612
8 TraesCS5B01G137500 chr1A 96.591 352 7 5 1602 1952 350415995 350415648 1.540000e-161 579
9 TraesCS5B01G137500 chr7A 95.526 1654 26 14 1 1638 688205812 688204191 0.000000e+00 2601
10 TraesCS5B01G137500 chr7A 96.591 352 7 5 1602 1952 688204035 688203688 1.540000e-161 579
11 TraesCS5B01G137500 chr3A 95.457 1651 30 13 1 1638 494806606 494804988 0.000000e+00 2591
12 TraesCS5B01G137500 chr3A 95.604 364 11 5 1602 1964 494804824 494804465 1.540000e-161 579
13 TraesCS5B01G137500 chr2B 94.360 1649 35 16 1 1638 629345929 629347530 0.000000e+00 2477
14 TraesCS5B01G137500 chr2B 96.697 757 10 8 896 1638 188257494 188256739 0.000000e+00 1245
15 TraesCS5B01G137500 chr2B 97.492 598 13 1 1 596 188258116 188257519 0.000000e+00 1020
16 TraesCS5B01G137500 chr2B 97.159 352 5 5 1602 1952 188256575 188256228 7.120000e-165 590
17 TraesCS5B01G137500 chr5A 94.421 1165 27 18 503 1638 414313200 414312045 0.000000e+00 1757
18 TraesCS5B01G137500 chr5A 95.180 1058 23 12 594 1638 426295985 426297027 0.000000e+00 1646
19 TraesCS5B01G137500 chr5A 96.875 352 6 5 1602 1952 414311965 414311618 3.310000e-163 584
20 TraesCS5B01G137500 chr5A 95.739 352 10 5 1601 1952 426297123 426297469 1.550000e-156 562
21 TraesCS5B01G137500 chr1B 96.041 1061 25 7 594 1638 647919148 647918089 0.000000e+00 1711
22 TraesCS5B01G137500 chr1B 95.055 546 22 4 1 543 647919617 647919074 0.000000e+00 854
23 TraesCS5B01G137500 chr1B 96.078 357 8 6 1601 1957 647918001 647917651 5.550000e-161 577
24 TraesCS5B01G137500 chr7B 95.947 1061 22 12 594 1638 122293969 122292914 0.000000e+00 1701
25 TraesCS5B01G137500 chr7B 89.319 749 18 13 215 962 536749499 536748812 0.000000e+00 883
26 TraesCS5B01G137500 chr7B 95.229 545 22 3 1 543 122294437 122293895 0.000000e+00 859


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G137500 chr5B 257531610 257533924 2314 True 4276.000000 4276 100.000000 1 2315 1 chr5B.!!$R2 2314
1 TraesCS5B01G137500 chr3B 739937792 739939849 2057 True 1600.000000 2614 96.235000 1 1952 2 chr3B.!!$R1 1951
2 TraesCS5B01G137500 chr3B 398845266 398847230 1964 False 1032.000000 1664 95.588333 1 1952 3 chr3B.!!$F1 1951
3 TraesCS5B01G137500 chr1A 350415648 350417696 2048 True 1595.500000 2612 96.119000 1 1952 2 chr1A.!!$R1 1951
4 TraesCS5B01G137500 chr7A 688203688 688205812 2124 True 1590.000000 2601 96.058500 1 1952 2 chr7A.!!$R1 1951
5 TraesCS5B01G137500 chr3A 494804465 494806606 2141 True 1585.000000 2591 95.530500 1 1964 2 chr3A.!!$R1 1963
6 TraesCS5B01G137500 chr2B 629345929 629347530 1601 False 2477.000000 2477 94.360000 1 1638 1 chr2B.!!$F1 1637
7 TraesCS5B01G137500 chr2B 188256228 188258116 1888 True 951.666667 1245 97.116000 1 1952 3 chr2B.!!$R1 1951
8 TraesCS5B01G137500 chr5A 414311618 414313200 1582 True 1170.500000 1757 95.648000 503 1952 2 chr5A.!!$R1 1449
9 TraesCS5B01G137500 chr5A 426295985 426297469 1484 False 1104.000000 1646 95.459500 594 1952 2 chr5A.!!$F1 1358
10 TraesCS5B01G137500 chr1B 647917651 647919617 1966 True 1047.333333 1711 95.724667 1 1957 3 chr1B.!!$R1 1956
11 TraesCS5B01G137500 chr7B 122292914 122294437 1523 True 1280.000000 1701 95.588000 1 1638 2 chr7B.!!$R2 1637
12 TraesCS5B01G137500 chr7B 536748812 536749499 687 True 883.000000 883 89.319000 215 962 1 chr7B.!!$R1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
570 581 0.03716 TGATGCTTGCTTCCTGCTGA 59.963 50.0 6.13 0.0 43.37 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2175 2465 0.030369 CGGATGTAGCACGGAGTACC 59.97 60.0 0.0 0.0 41.61 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.373169 AGCCATTGGTGAGAGTTCTTCA 59.627 45.455 4.26 0.00 0.00 3.02
284 287 4.344679 ACCACTGCAAATGAAGGATTTCAA 59.655 37.500 0.00 0.00 45.82 2.69
479 482 1.607628 ACTCTTTTCTTGCTGCTGCTG 59.392 47.619 17.00 9.59 40.48 4.41
480 483 0.313043 TCTTTTCTTGCTGCTGCTGC 59.687 50.000 22.51 22.51 40.48 5.25
489 492 2.776659 CTGCTGCTGCTGCTATTGA 58.223 52.632 27.67 10.07 40.48 2.57
490 493 1.309950 CTGCTGCTGCTGCTATTGAT 58.690 50.000 27.67 0.00 40.48 2.57
491 494 1.002359 CTGCTGCTGCTGCTATTGATG 60.002 52.381 27.67 9.11 40.48 3.07
492 495 0.317938 GCTGCTGCTGCTATTGATGC 60.318 55.000 22.10 6.04 40.48 3.91
493 496 1.309950 CTGCTGCTGCTATTGATGCT 58.690 50.000 17.00 0.00 40.48 3.79
494 497 1.676529 CTGCTGCTGCTATTGATGCTT 59.323 47.619 17.00 0.00 40.48 3.91
495 498 1.404035 TGCTGCTGCTATTGATGCTTG 59.596 47.619 17.00 0.00 40.48 4.01
497 500 2.159282 GCTGCTGCTATTGATGCTTGTT 60.159 45.455 8.53 0.00 36.03 2.83
499 502 4.100707 TGCTGCTATTGATGCTTGTTTC 57.899 40.909 0.00 0.00 0.00 2.78
501 504 4.219070 TGCTGCTATTGATGCTTGTTTCTT 59.781 37.500 0.00 0.00 0.00 2.52
502 505 4.561606 GCTGCTATTGATGCTTGTTTCTTG 59.438 41.667 0.00 0.00 0.00 3.02
503 506 4.487948 TGCTATTGATGCTTGTTTCTTGC 58.512 39.130 0.00 0.00 0.00 4.01
504 507 4.219070 TGCTATTGATGCTTGTTTCTTGCT 59.781 37.500 0.00 0.00 0.00 3.91
505 508 4.561606 GCTATTGATGCTTGTTTCTTGCTG 59.438 41.667 0.00 0.00 0.00 4.41
506 509 2.427232 TGATGCTTGTTTCTTGCTGC 57.573 45.000 0.00 0.00 0.00 5.25
570 581 0.037160 TGATGCTTGCTTCCTGCTGA 59.963 50.000 6.13 0.00 43.37 4.26
571 582 1.340697 TGATGCTTGCTTCCTGCTGAT 60.341 47.619 6.13 0.00 43.37 2.90
572 583 1.065701 GATGCTTGCTTCCTGCTGATG 59.934 52.381 0.00 0.00 43.37 3.07
573 584 0.251033 TGCTTGCTTCCTGCTGATGT 60.251 50.000 0.00 0.00 43.37 3.06
574 585 0.886563 GCTTGCTTCCTGCTGATGTT 59.113 50.000 0.00 0.00 43.37 2.71
575 586 1.402456 GCTTGCTTCCTGCTGATGTTG 60.402 52.381 0.00 0.00 43.37 3.33
576 587 0.599558 TTGCTTCCTGCTGATGTTGC 59.400 50.000 0.00 0.00 43.37 4.17
577 588 0.251033 TGCTTCCTGCTGATGTTGCT 60.251 50.000 0.00 0.00 43.37 3.91
578 589 1.003464 TGCTTCCTGCTGATGTTGCTA 59.997 47.619 0.00 0.00 43.37 3.49
579 590 1.399791 GCTTCCTGCTGATGTTGCTAC 59.600 52.381 0.00 0.00 38.95 3.58
580 591 2.012673 CTTCCTGCTGATGTTGCTACC 58.987 52.381 0.00 0.00 0.00 3.18
581 592 0.983467 TCCTGCTGATGTTGCTACCA 59.017 50.000 0.00 0.00 0.00 3.25
582 593 1.561076 TCCTGCTGATGTTGCTACCAT 59.439 47.619 0.00 0.00 0.00 3.55
583 594 1.674441 CCTGCTGATGTTGCTACCATG 59.326 52.381 0.00 0.00 0.00 3.66
584 595 1.065102 CTGCTGATGTTGCTACCATGC 59.935 52.381 0.00 0.00 0.00 4.06
585 596 1.340308 TGCTGATGTTGCTACCATGCT 60.340 47.619 0.00 0.00 0.00 3.79
586 597 2.093021 TGCTGATGTTGCTACCATGCTA 60.093 45.455 0.00 0.00 0.00 3.49
587 598 2.289002 GCTGATGTTGCTACCATGCTAC 59.711 50.000 0.00 0.00 38.72 3.58
588 599 3.801698 CTGATGTTGCTACCATGCTACT 58.198 45.455 0.00 0.00 38.94 2.57
589 600 3.534554 TGATGTTGCTACCATGCTACTG 58.465 45.455 0.00 0.00 38.94 2.74
590 601 1.737838 TGTTGCTACCATGCTACTGC 58.262 50.000 0.00 0.00 38.94 4.40
591 602 1.278985 TGTTGCTACCATGCTACTGCT 59.721 47.619 0.00 0.00 38.94 4.24
592 603 1.667724 GTTGCTACCATGCTACTGCTG 59.332 52.381 0.00 0.00 40.48 4.41
596 607 2.936993 GCTACCATGCTACTGCTGTTGT 60.937 50.000 0.09 0.00 40.48 3.32
968 1021 3.695830 AGAAATAGGCTCACAACGGAA 57.304 42.857 0.00 0.00 0.00 4.30
969 1022 4.015872 AGAAATAGGCTCACAACGGAAA 57.984 40.909 0.00 0.00 0.00 3.13
970 1023 4.589908 AGAAATAGGCTCACAACGGAAAT 58.410 39.130 0.00 0.00 0.00 2.17
972 1025 2.107950 TAGGCTCACAACGGAAATGG 57.892 50.000 0.00 0.00 0.00 3.16
974 1027 0.608035 GGCTCACAACGGAAATGGGA 60.608 55.000 0.00 0.00 0.00 4.37
975 1028 1.463674 GCTCACAACGGAAATGGGAT 58.536 50.000 0.00 0.00 28.03 3.85
976 1029 1.133025 GCTCACAACGGAAATGGGATG 59.867 52.381 0.00 0.00 28.03 3.51
977 1030 2.436417 CTCACAACGGAAATGGGATGT 58.564 47.619 0.00 0.00 28.03 3.06
978 1031 2.158559 TCACAACGGAAATGGGATGTG 58.841 47.619 0.00 0.00 39.50 3.21
979 1032 0.887933 ACAACGGAAATGGGATGTGC 59.112 50.000 0.00 0.00 0.00 4.57
1100 1161 4.168871 AGGATTTCTATTTGAAGGAGGGGG 59.831 45.833 0.00 0.00 35.89 5.40
1217 1279 2.945008 CACAAGAGCAACTCCAACTTCA 59.055 45.455 0.00 0.00 0.00 3.02
1281 1349 8.530804 AATCCGATCATGATGATGAGATAGTA 57.469 34.615 14.30 0.00 42.01 1.82
1338 1406 2.543238 GGCATTGAGCATTTGAGCTAGC 60.543 50.000 6.62 6.62 46.75 3.42
1632 1700 3.670523 GCTACTTTGCTAGTTTGCTTTGC 59.329 43.478 0.00 0.00 38.33 3.68
1898 2188 5.815740 CCTAATCACGCCTAAGCTAGAAAAA 59.184 40.000 0.00 0.00 36.60 1.94
1953 2243 1.131771 GCGCTTTCTCAAACTTTGCC 58.868 50.000 0.00 0.00 0.00 4.52
1956 2246 3.814945 CGCTTTCTCAAACTTTGCCTAG 58.185 45.455 0.00 0.00 0.00 3.02
1957 2247 3.498397 CGCTTTCTCAAACTTTGCCTAGA 59.502 43.478 0.00 0.00 0.00 2.43
1964 2254 3.882888 TCAAACTTTGCCTAGAACCACTG 59.117 43.478 0.00 0.00 0.00 3.66
1965 2255 1.897560 ACTTTGCCTAGAACCACTGC 58.102 50.000 0.00 0.00 0.00 4.40
1966 2256 1.168714 CTTTGCCTAGAACCACTGCC 58.831 55.000 0.00 0.00 0.00 4.85
1967 2257 0.771127 TTTGCCTAGAACCACTGCCT 59.229 50.000 0.00 0.00 0.00 4.75
1968 2258 0.771127 TTGCCTAGAACCACTGCCTT 59.229 50.000 0.00 0.00 0.00 4.35
1969 2259 0.771127 TGCCTAGAACCACTGCCTTT 59.229 50.000 0.00 0.00 0.00 3.11
1970 2260 1.271379 TGCCTAGAACCACTGCCTTTC 60.271 52.381 0.00 0.00 0.00 2.62
1971 2261 1.726853 CCTAGAACCACTGCCTTTCG 58.273 55.000 0.00 0.00 0.00 3.46
1972 2262 1.275291 CCTAGAACCACTGCCTTTCGA 59.725 52.381 0.00 0.00 0.00 3.71
1973 2263 2.611518 CTAGAACCACTGCCTTTCGAG 58.388 52.381 0.00 0.00 0.00 4.04
1974 2264 0.603975 AGAACCACTGCCTTTCGAGC 60.604 55.000 0.00 0.00 0.00 5.03
1975 2265 0.603975 GAACCACTGCCTTTCGAGCT 60.604 55.000 0.00 0.00 0.00 4.09
1976 2266 0.685097 AACCACTGCCTTTCGAGCTA 59.315 50.000 0.00 0.00 0.00 3.32
1977 2267 0.685097 ACCACTGCCTTTCGAGCTAA 59.315 50.000 0.00 0.00 0.00 3.09
1978 2268 1.071699 ACCACTGCCTTTCGAGCTAAA 59.928 47.619 0.00 0.00 0.00 1.85
1979 2269 1.734465 CCACTGCCTTTCGAGCTAAAG 59.266 52.381 2.47 2.47 36.43 1.85
1980 2270 1.129437 CACTGCCTTTCGAGCTAAAGC 59.871 52.381 3.78 0.00 42.49 3.51
1981 2271 0.729690 CTGCCTTTCGAGCTAAAGCC 59.270 55.000 3.78 0.00 43.38 4.35
1982 2272 0.324943 TGCCTTTCGAGCTAAAGCCT 59.675 50.000 3.78 0.00 43.38 4.58
1983 2273 1.010580 GCCTTTCGAGCTAAAGCCTC 58.989 55.000 3.78 0.00 43.38 4.70
1984 2274 1.406205 GCCTTTCGAGCTAAAGCCTCT 60.406 52.381 3.78 0.00 43.38 3.69
1985 2275 2.937433 GCCTTTCGAGCTAAAGCCTCTT 60.937 50.000 3.78 0.00 43.38 2.85
1986 2276 2.675348 CCTTTCGAGCTAAAGCCTCTTG 59.325 50.000 3.78 0.00 43.38 3.02
1987 2277 2.386661 TTCGAGCTAAAGCCTCTTGG 57.613 50.000 0.00 0.00 43.38 3.61
1988 2278 1.557099 TCGAGCTAAAGCCTCTTGGA 58.443 50.000 0.00 0.00 43.38 3.53
1989 2279 1.204941 TCGAGCTAAAGCCTCTTGGAC 59.795 52.381 0.00 0.00 43.38 4.02
1990 2280 1.205893 CGAGCTAAAGCCTCTTGGACT 59.794 52.381 0.00 0.00 43.38 3.85
1991 2281 2.354203 CGAGCTAAAGCCTCTTGGACTT 60.354 50.000 0.00 0.00 43.38 3.01
1992 2282 3.266636 GAGCTAAAGCCTCTTGGACTTC 58.733 50.000 0.00 0.00 43.38 3.01
1993 2283 2.026729 AGCTAAAGCCTCTTGGACTTCC 60.027 50.000 0.00 0.00 43.38 3.46
1994 2284 2.026729 GCTAAAGCCTCTTGGACTTCCT 60.027 50.000 0.00 0.00 33.97 3.36
1995 2285 2.575805 AAAGCCTCTTGGACTTCCTG 57.424 50.000 0.00 0.00 36.82 3.86
1996 2286 1.734655 AAGCCTCTTGGACTTCCTGA 58.265 50.000 0.00 0.00 36.82 3.86
1997 2287 1.734655 AGCCTCTTGGACTTCCTGAA 58.265 50.000 0.00 0.00 36.82 3.02
1998 2288 2.273619 AGCCTCTTGGACTTCCTGAAT 58.726 47.619 0.00 0.00 36.82 2.57
1999 2289 2.238395 AGCCTCTTGGACTTCCTGAATC 59.762 50.000 0.00 0.00 36.82 2.52
2000 2290 2.238395 GCCTCTTGGACTTCCTGAATCT 59.762 50.000 0.00 0.00 36.82 2.40
2001 2291 3.308046 GCCTCTTGGACTTCCTGAATCTT 60.308 47.826 0.00 0.00 36.82 2.40
2002 2292 4.809007 GCCTCTTGGACTTCCTGAATCTTT 60.809 45.833 0.00 0.00 36.82 2.52
2003 2293 5.320277 CCTCTTGGACTTCCTGAATCTTTT 58.680 41.667 0.00 0.00 36.82 2.27
2004 2294 5.182760 CCTCTTGGACTTCCTGAATCTTTTG 59.817 44.000 0.00 0.00 36.82 2.44
2005 2295 5.694995 TCTTGGACTTCCTGAATCTTTTGT 58.305 37.500 0.00 0.00 36.82 2.83
2006 2296 6.129179 TCTTGGACTTCCTGAATCTTTTGTT 58.871 36.000 0.00 0.00 36.82 2.83
2007 2297 5.772825 TGGACTTCCTGAATCTTTTGTTG 57.227 39.130 0.00 0.00 36.82 3.33
2008 2298 5.200483 TGGACTTCCTGAATCTTTTGTTGT 58.800 37.500 0.00 0.00 36.82 3.32
2009 2299 5.656416 TGGACTTCCTGAATCTTTTGTTGTT 59.344 36.000 0.00 0.00 36.82 2.83
2010 2300 6.154363 TGGACTTCCTGAATCTTTTGTTGTTT 59.846 34.615 0.00 0.00 36.82 2.83
2011 2301 6.697455 GGACTTCCTGAATCTTTTGTTGTTTC 59.303 38.462 0.00 0.00 0.00 2.78
2012 2302 7.169158 ACTTCCTGAATCTTTTGTTGTTTCA 57.831 32.000 0.00 0.00 0.00 2.69
2013 2303 7.035612 ACTTCCTGAATCTTTTGTTGTTTCAC 58.964 34.615 0.00 0.00 0.00 3.18
2014 2304 6.522625 TCCTGAATCTTTTGTTGTTTCACA 57.477 33.333 0.00 0.00 0.00 3.58
2015 2305 6.563422 TCCTGAATCTTTTGTTGTTTCACAG 58.437 36.000 0.00 0.00 0.00 3.66
2016 2306 5.232838 CCTGAATCTTTTGTTGTTTCACAGC 59.767 40.000 0.00 0.00 0.00 4.40
2017 2307 5.108517 TGAATCTTTTGTTGTTTCACAGCC 58.891 37.500 0.00 0.00 0.00 4.85
2018 2308 5.105392 TGAATCTTTTGTTGTTTCACAGCCT 60.105 36.000 0.00 0.00 0.00 4.58
2019 2309 4.108699 TCTTTTGTTGTTTCACAGCCTG 57.891 40.909 0.00 0.00 0.00 4.85
2020 2310 2.957491 TTTGTTGTTTCACAGCCTGG 57.043 45.000 0.00 0.00 0.00 4.45
2021 2311 0.459489 TTGTTGTTTCACAGCCTGGC 59.541 50.000 11.65 11.65 0.00 4.85
2022 2312 0.395586 TGTTGTTTCACAGCCTGGCT 60.396 50.000 17.22 17.22 40.77 4.75
2023 2313 0.312102 GTTGTTTCACAGCCTGGCTC 59.688 55.000 20.49 7.07 36.40 4.70
2024 2314 0.106769 TTGTTTCACAGCCTGGCTCA 60.107 50.000 20.49 9.98 36.40 4.26
2025 2315 0.819259 TGTTTCACAGCCTGGCTCAC 60.819 55.000 20.49 10.92 36.40 3.51
2026 2316 0.819259 GTTTCACAGCCTGGCTCACA 60.819 55.000 20.49 1.58 36.40 3.58
2027 2317 0.106769 TTTCACAGCCTGGCTCACAA 60.107 50.000 20.49 8.42 36.40 3.33
2028 2318 0.535780 TTCACAGCCTGGCTCACAAG 60.536 55.000 20.49 9.99 36.40 3.16
2037 2327 4.919653 GCTCACAAGCGGATCTGA 57.080 55.556 5.48 0.00 39.10 3.27
2038 2328 2.378028 GCTCACAAGCGGATCTGAC 58.622 57.895 5.48 0.00 39.10 3.51
2039 2329 0.390340 GCTCACAAGCGGATCTGACA 60.390 55.000 5.48 0.00 39.10 3.58
2040 2330 1.638133 CTCACAAGCGGATCTGACAG 58.362 55.000 5.48 0.00 0.00 3.51
2041 2331 1.203287 CTCACAAGCGGATCTGACAGA 59.797 52.381 7.80 7.80 0.00 3.41
2042 2332 1.618343 TCACAAGCGGATCTGACAGAA 59.382 47.619 9.70 0.00 0.00 3.02
2043 2333 2.234661 TCACAAGCGGATCTGACAGAAT 59.765 45.455 9.70 0.00 0.00 2.40
2044 2334 2.350804 CACAAGCGGATCTGACAGAATG 59.649 50.000 9.70 3.53 46.00 2.67
2045 2335 1.938577 CAAGCGGATCTGACAGAATGG 59.061 52.381 9.70 2.61 43.62 3.16
2061 2351 7.658525 ACAGAATGGCATGGTTATAATTTGA 57.341 32.000 0.00 0.00 43.62 2.69
2062 2352 7.491682 ACAGAATGGCATGGTTATAATTTGAC 58.508 34.615 0.00 0.00 43.62 3.18
2063 2353 7.123997 ACAGAATGGCATGGTTATAATTTGACA 59.876 33.333 0.00 4.02 43.62 3.58
2064 2354 7.650504 CAGAATGGCATGGTTATAATTTGACAG 59.349 37.037 0.00 0.00 0.00 3.51
2065 2355 5.261209 TGGCATGGTTATAATTTGACAGC 57.739 39.130 0.00 0.00 0.00 4.40
2066 2356 4.708909 TGGCATGGTTATAATTTGACAGCA 59.291 37.500 0.00 0.00 0.00 4.41
2067 2357 5.043248 GGCATGGTTATAATTTGACAGCAC 58.957 41.667 0.00 0.00 0.00 4.40
2068 2358 5.163519 GGCATGGTTATAATTTGACAGCACT 60.164 40.000 0.00 0.00 0.00 4.40
2069 2359 6.332630 GCATGGTTATAATTTGACAGCACTT 58.667 36.000 0.00 0.00 0.00 3.16
2070 2360 6.473455 GCATGGTTATAATTTGACAGCACTTC 59.527 38.462 0.00 0.00 0.00 3.01
2071 2361 7.537715 CATGGTTATAATTTGACAGCACTTCA 58.462 34.615 0.00 0.00 0.00 3.02
2072 2362 7.517614 TGGTTATAATTTGACAGCACTTCAA 57.482 32.000 0.00 0.00 0.00 2.69
2073 2363 7.367285 TGGTTATAATTTGACAGCACTTCAAC 58.633 34.615 0.00 0.00 32.65 3.18
2074 2364 6.523201 GGTTATAATTTGACAGCACTTCAACG 59.477 38.462 0.00 0.00 32.65 4.10
2075 2365 2.405892 ATTTGACAGCACTTCAACGC 57.594 45.000 0.00 0.00 32.65 4.84
2076 2366 0.380378 TTTGACAGCACTTCAACGCC 59.620 50.000 0.00 0.00 32.65 5.68
2077 2367 0.746204 TTGACAGCACTTCAACGCCA 60.746 50.000 0.00 0.00 0.00 5.69
2078 2368 0.534877 TGACAGCACTTCAACGCCAT 60.535 50.000 0.00 0.00 0.00 4.40
2079 2369 0.110056 GACAGCACTTCAACGCCATG 60.110 55.000 0.00 0.00 0.00 3.66
2080 2370 0.819259 ACAGCACTTCAACGCCATGT 60.819 50.000 0.00 0.00 0.00 3.21
2081 2371 0.386352 CAGCACTTCAACGCCATGTG 60.386 55.000 0.00 0.00 0.00 3.21
2082 2372 1.730547 GCACTTCAACGCCATGTGC 60.731 57.895 0.00 0.00 45.23 4.57
2083 2373 1.653667 CACTTCAACGCCATGTGCA 59.346 52.632 6.92 0.00 41.33 4.57
2084 2374 0.030504 CACTTCAACGCCATGTGCAA 59.969 50.000 0.00 0.00 41.33 4.08
2085 2375 0.743688 ACTTCAACGCCATGTGCAAA 59.256 45.000 0.00 0.00 41.33 3.68
2086 2376 1.340889 ACTTCAACGCCATGTGCAAAT 59.659 42.857 0.00 0.00 41.33 2.32
2087 2377 2.224018 ACTTCAACGCCATGTGCAAATT 60.224 40.909 0.00 0.00 41.33 1.82
2088 2378 2.522836 TCAACGCCATGTGCAAATTT 57.477 40.000 0.00 0.00 41.33 1.82
2089 2379 3.650070 TCAACGCCATGTGCAAATTTA 57.350 38.095 0.00 0.00 41.33 1.40
2090 2380 4.185467 TCAACGCCATGTGCAAATTTAT 57.815 36.364 0.00 0.00 41.33 1.40
2091 2381 4.172505 TCAACGCCATGTGCAAATTTATC 58.827 39.130 0.00 0.00 41.33 1.75
2092 2382 3.163630 ACGCCATGTGCAAATTTATCC 57.836 42.857 0.00 0.00 41.33 2.59
2093 2383 2.495270 ACGCCATGTGCAAATTTATCCA 59.505 40.909 0.00 0.00 41.33 3.41
2094 2384 3.132646 ACGCCATGTGCAAATTTATCCAT 59.867 39.130 0.00 0.00 41.33 3.41
2095 2385 3.491639 CGCCATGTGCAAATTTATCCATG 59.508 43.478 12.66 12.66 41.33 3.66
2096 2386 4.444536 GCCATGTGCAAATTTATCCATGT 58.555 39.130 15.95 0.00 40.77 3.21
2097 2387 4.877251 GCCATGTGCAAATTTATCCATGTT 59.123 37.500 15.95 0.00 40.77 2.71
2098 2388 6.047870 GCCATGTGCAAATTTATCCATGTTA 58.952 36.000 15.95 0.00 40.77 2.41
2099 2389 6.538021 GCCATGTGCAAATTTATCCATGTTAA 59.462 34.615 15.95 0.00 40.77 2.01
2100 2390 7.254522 GCCATGTGCAAATTTATCCATGTTAAG 60.255 37.037 15.95 7.18 40.77 1.85
2101 2391 7.980662 CCATGTGCAAATTTATCCATGTTAAGA 59.019 33.333 15.95 0.00 0.00 2.10
2102 2392 9.368674 CATGTGCAAATTTATCCATGTTAAGAA 57.631 29.630 11.89 0.00 0.00 2.52
2104 2394 9.941325 TGTGCAAATTTATCCATGTTAAGAATT 57.059 25.926 0.00 0.00 0.00 2.17
2113 2403 7.992754 ATCCATGTTAAGAATTATCTCCAGC 57.007 36.000 0.00 0.00 33.77 4.85
2114 2404 6.899089 TCCATGTTAAGAATTATCTCCAGCA 58.101 36.000 0.00 0.00 33.77 4.41
2115 2405 7.345691 TCCATGTTAAGAATTATCTCCAGCAA 58.654 34.615 0.00 0.00 33.77 3.91
2116 2406 7.283127 TCCATGTTAAGAATTATCTCCAGCAAC 59.717 37.037 0.00 0.00 33.77 4.17
2117 2407 7.420800 CATGTTAAGAATTATCTCCAGCAACC 58.579 38.462 0.00 0.00 33.77 3.77
2118 2408 6.721318 TGTTAAGAATTATCTCCAGCAACCT 58.279 36.000 0.00 0.00 33.77 3.50
2119 2409 6.823689 TGTTAAGAATTATCTCCAGCAACCTC 59.176 38.462 0.00 0.00 33.77 3.85
2120 2410 5.707066 AAGAATTATCTCCAGCAACCTCT 57.293 39.130 0.00 0.00 33.77 3.69
2121 2411 5.707066 AGAATTATCTCCAGCAACCTCTT 57.293 39.130 0.00 0.00 0.00 2.85
2122 2412 5.679601 AGAATTATCTCCAGCAACCTCTTC 58.320 41.667 0.00 0.00 0.00 2.87
2123 2413 5.428131 AGAATTATCTCCAGCAACCTCTTCT 59.572 40.000 0.00 0.00 0.00 2.85
2124 2414 4.744795 TTATCTCCAGCAACCTCTTCTC 57.255 45.455 0.00 0.00 0.00 2.87
2125 2415 2.015456 TCTCCAGCAACCTCTTCTCA 57.985 50.000 0.00 0.00 0.00 3.27
2126 2416 1.898472 TCTCCAGCAACCTCTTCTCAG 59.102 52.381 0.00 0.00 0.00 3.35
2127 2417 1.622811 CTCCAGCAACCTCTTCTCAGT 59.377 52.381 0.00 0.00 0.00 3.41
2128 2418 2.038295 CTCCAGCAACCTCTTCTCAGTT 59.962 50.000 0.00 0.00 0.00 3.16
2129 2419 2.439507 TCCAGCAACCTCTTCTCAGTTT 59.560 45.455 0.00 0.00 0.00 2.66
2130 2420 2.551459 CCAGCAACCTCTTCTCAGTTTG 59.449 50.000 0.00 0.00 0.00 2.93
2131 2421 3.470709 CAGCAACCTCTTCTCAGTTTGA 58.529 45.455 0.00 0.00 0.00 2.69
2132 2422 4.070716 CAGCAACCTCTTCTCAGTTTGAT 58.929 43.478 0.00 0.00 0.00 2.57
2133 2423 4.153835 CAGCAACCTCTTCTCAGTTTGATC 59.846 45.833 0.00 0.00 0.00 2.92
2134 2424 4.041444 AGCAACCTCTTCTCAGTTTGATCT 59.959 41.667 0.00 0.00 0.00 2.75
2135 2425 4.153835 GCAACCTCTTCTCAGTTTGATCTG 59.846 45.833 0.00 0.00 36.85 2.90
2136 2426 5.303971 CAACCTCTTCTCAGTTTGATCTGT 58.696 41.667 0.00 0.00 36.85 3.41
2137 2427 5.559148 ACCTCTTCTCAGTTTGATCTGTT 57.441 39.130 0.00 0.00 36.85 3.16
2138 2428 5.303971 ACCTCTTCTCAGTTTGATCTGTTG 58.696 41.667 0.00 0.00 36.85 3.33
2139 2429 4.694509 CCTCTTCTCAGTTTGATCTGTTGG 59.305 45.833 0.00 0.00 36.85 3.77
2140 2430 5.512060 CCTCTTCTCAGTTTGATCTGTTGGA 60.512 44.000 0.00 0.00 36.85 3.53
2141 2431 5.928976 TCTTCTCAGTTTGATCTGTTGGAA 58.071 37.500 0.00 0.00 36.85 3.53
2142 2432 6.537355 TCTTCTCAGTTTGATCTGTTGGAAT 58.463 36.000 0.00 0.00 36.85 3.01
2143 2433 7.679783 TCTTCTCAGTTTGATCTGTTGGAATA 58.320 34.615 0.00 0.00 36.85 1.75
2144 2434 8.324306 TCTTCTCAGTTTGATCTGTTGGAATAT 58.676 33.333 0.00 0.00 36.85 1.28
2145 2435 9.605275 CTTCTCAGTTTGATCTGTTGGAATATA 57.395 33.333 0.00 0.00 36.85 0.86
2171 2461 5.786401 AGTTCTTTCGTAGTTCATCATGC 57.214 39.130 0.00 0.00 0.00 4.06
2172 2462 5.482908 AGTTCTTTCGTAGTTCATCATGCT 58.517 37.500 0.00 0.00 0.00 3.79
2173 2463 5.934625 AGTTCTTTCGTAGTTCATCATGCTT 59.065 36.000 0.00 0.00 0.00 3.91
2174 2464 5.784750 TCTTTCGTAGTTCATCATGCTTG 57.215 39.130 0.00 0.00 0.00 4.01
2175 2465 4.631377 TCTTTCGTAGTTCATCATGCTTGG 59.369 41.667 0.00 0.00 0.00 3.61
2176 2466 2.905075 TCGTAGTTCATCATGCTTGGG 58.095 47.619 0.00 0.00 0.00 4.12
2177 2467 2.236146 TCGTAGTTCATCATGCTTGGGT 59.764 45.455 0.00 0.00 0.00 4.51
2178 2468 3.449377 TCGTAGTTCATCATGCTTGGGTA 59.551 43.478 0.00 0.00 0.00 3.69
2179 2469 3.555956 CGTAGTTCATCATGCTTGGGTAC 59.444 47.826 0.00 0.00 0.00 3.34
2180 2470 4.680708 CGTAGTTCATCATGCTTGGGTACT 60.681 45.833 0.00 5.11 0.00 2.73
2181 2471 3.878778 AGTTCATCATGCTTGGGTACTC 58.121 45.455 0.00 0.00 0.00 2.59
2182 2472 2.945668 GTTCATCATGCTTGGGTACTCC 59.054 50.000 0.00 0.00 0.00 3.85
2183 2473 1.138859 TCATCATGCTTGGGTACTCCG 59.861 52.381 0.00 0.00 38.76 4.63
2184 2474 1.134401 CATCATGCTTGGGTACTCCGT 60.134 52.381 0.00 0.00 38.76 4.69
2185 2475 0.249120 TCATGCTTGGGTACTCCGTG 59.751 55.000 0.00 0.00 38.76 4.94
2186 2476 1.078426 ATGCTTGGGTACTCCGTGC 60.078 57.895 0.00 0.96 38.76 5.34
2187 2477 1.553690 ATGCTTGGGTACTCCGTGCT 61.554 55.000 13.87 3.46 38.76 4.40
2188 2478 0.901114 TGCTTGGGTACTCCGTGCTA 60.901 55.000 13.87 4.03 38.76 3.49
2189 2479 0.459759 GCTTGGGTACTCCGTGCTAC 60.460 60.000 0.00 0.00 38.76 3.58
2190 2480 0.892755 CTTGGGTACTCCGTGCTACA 59.107 55.000 0.00 0.00 38.76 2.74
2191 2481 1.480954 CTTGGGTACTCCGTGCTACAT 59.519 52.381 0.00 0.00 38.76 2.29
2192 2482 1.108776 TGGGTACTCCGTGCTACATC 58.891 55.000 0.00 0.00 38.76 3.06
2193 2483 0.388294 GGGTACTCCGTGCTACATCC 59.612 60.000 0.00 0.00 33.83 3.51
2194 2484 0.030369 GGTACTCCGTGCTACATCCG 59.970 60.000 0.00 0.00 0.00 4.18
2195 2485 1.019673 GTACTCCGTGCTACATCCGA 58.980 55.000 0.00 0.00 0.00 4.55
2196 2486 1.402968 GTACTCCGTGCTACATCCGAA 59.597 52.381 0.00 0.00 0.00 4.30
2197 2487 1.112113 ACTCCGTGCTACATCCGAAT 58.888 50.000 0.00 0.00 0.00 3.34
2198 2488 1.202417 ACTCCGTGCTACATCCGAATG 60.202 52.381 0.00 0.00 38.93 2.67
2199 2489 0.104120 TCCGTGCTACATCCGAATGG 59.896 55.000 0.00 0.00 37.19 3.16
2215 2505 7.969536 TCCGAATGGAATAGAATCTTTGATC 57.030 36.000 0.00 0.00 42.85 2.92
2216 2506 7.508687 TCCGAATGGAATAGAATCTTTGATCA 58.491 34.615 0.00 0.00 42.85 2.92
2217 2507 8.159447 TCCGAATGGAATAGAATCTTTGATCAT 58.841 33.333 0.00 0.00 42.85 2.45
2218 2508 8.790718 CCGAATGGAATAGAATCTTTGATCATT 58.209 33.333 0.00 0.00 37.49 2.57
2222 2512 8.827832 TGGAATAGAATCTTTGATCATTTGGT 57.172 30.769 0.00 0.00 0.00 3.67
2223 2513 9.919416 TGGAATAGAATCTTTGATCATTTGGTA 57.081 29.630 0.00 0.00 0.00 3.25
2229 2519 8.964772 AGAATCTTTGATCATTTGGTAAGAAGG 58.035 33.333 8.85 0.00 0.00 3.46
2230 2520 8.884124 AATCTTTGATCATTTGGTAAGAAGGA 57.116 30.769 8.85 0.00 0.00 3.36
2231 2521 9.484806 AATCTTTGATCATTTGGTAAGAAGGAT 57.515 29.630 8.85 0.00 30.97 3.24
2232 2522 8.284945 TCTTTGATCATTTGGTAAGAAGGATG 57.715 34.615 0.00 0.00 28.73 3.51
2233 2523 6.455360 TTGATCATTTGGTAAGAAGGATGC 57.545 37.500 0.00 0.00 28.73 3.91
2234 2524 4.576053 TGATCATTTGGTAAGAAGGATGCG 59.424 41.667 0.00 0.00 28.73 4.73
2235 2525 3.950397 TCATTTGGTAAGAAGGATGCGT 58.050 40.909 0.00 0.00 0.00 5.24
2236 2526 3.938963 TCATTTGGTAAGAAGGATGCGTC 59.061 43.478 0.00 0.00 0.00 5.19
2237 2527 3.410631 TTTGGTAAGAAGGATGCGTCA 57.589 42.857 8.47 0.00 0.00 4.35
2238 2528 2.380084 TGGTAAGAAGGATGCGTCAC 57.620 50.000 8.47 0.00 0.00 3.67
2239 2529 1.621317 TGGTAAGAAGGATGCGTCACA 59.379 47.619 8.47 0.00 0.00 3.58
2240 2530 2.037902 TGGTAAGAAGGATGCGTCACAA 59.962 45.455 8.47 0.00 0.00 3.33
2241 2531 2.673368 GGTAAGAAGGATGCGTCACAAG 59.327 50.000 8.47 0.00 0.00 3.16
2242 2532 1.160137 AAGAAGGATGCGTCACAAGC 58.840 50.000 8.47 0.00 0.00 4.01
2243 2533 0.322975 AGAAGGATGCGTCACAAGCT 59.677 50.000 8.47 0.00 35.28 3.74
2244 2534 0.723981 GAAGGATGCGTCACAAGCTC 59.276 55.000 8.47 0.00 35.28 4.09
2245 2535 0.035317 AAGGATGCGTCACAAGCTCA 59.965 50.000 8.47 0.00 35.28 4.26
2246 2536 0.035317 AGGATGCGTCACAAGCTCAA 59.965 50.000 8.47 0.00 35.28 3.02
2247 2537 0.874390 GGATGCGTCACAAGCTCAAA 59.126 50.000 8.47 0.00 35.28 2.69
2248 2538 1.135859 GGATGCGTCACAAGCTCAAAG 60.136 52.381 8.47 0.00 35.28 2.77
2249 2539 1.800586 GATGCGTCACAAGCTCAAAGA 59.199 47.619 0.00 0.00 35.28 2.52
2250 2540 1.882912 TGCGTCACAAGCTCAAAGAT 58.117 45.000 0.00 0.00 35.28 2.40
2251 2541 2.221169 TGCGTCACAAGCTCAAAGATT 58.779 42.857 0.00 0.00 35.28 2.40
2252 2542 2.618241 TGCGTCACAAGCTCAAAGATTT 59.382 40.909 0.00 0.00 35.28 2.17
2253 2543 3.229552 GCGTCACAAGCTCAAAGATTTC 58.770 45.455 0.00 0.00 0.00 2.17
2254 2544 3.303990 GCGTCACAAGCTCAAAGATTTCA 60.304 43.478 0.00 0.00 0.00 2.69
2255 2545 4.614535 GCGTCACAAGCTCAAAGATTTCAT 60.615 41.667 0.00 0.00 0.00 2.57
2256 2546 5.084722 CGTCACAAGCTCAAAGATTTCATC 58.915 41.667 0.00 0.00 0.00 2.92
2257 2547 5.334337 CGTCACAAGCTCAAAGATTTCATCA 60.334 40.000 0.00 0.00 0.00 3.07
2258 2548 6.618811 GTCACAAGCTCAAAGATTTCATCAT 58.381 36.000 0.00 0.00 0.00 2.45
2259 2549 6.746364 GTCACAAGCTCAAAGATTTCATCATC 59.254 38.462 0.00 0.00 0.00 2.92
2260 2550 6.657966 TCACAAGCTCAAAGATTTCATCATCT 59.342 34.615 0.00 0.00 34.78 2.90
2261 2551 7.176165 TCACAAGCTCAAAGATTTCATCATCTT 59.824 33.333 0.00 0.00 44.05 2.40
2276 2566 9.897744 TTTCATCATCTTTGTTACTAAAAGCAG 57.102 29.630 0.00 0.00 35.12 4.24
2277 2567 8.846943 TCATCATCTTTGTTACTAAAAGCAGA 57.153 30.769 0.00 0.00 35.12 4.26
2278 2568 9.283768 TCATCATCTTTGTTACTAAAAGCAGAA 57.716 29.630 0.00 0.00 35.12 3.02
2279 2569 9.897744 CATCATCTTTGTTACTAAAAGCAGAAA 57.102 29.630 0.00 0.00 35.12 2.52
2281 2571 8.567948 TCATCTTTGTTACTAAAAGCAGAAAGG 58.432 33.333 0.00 0.00 35.12 3.11
2282 2572 7.875327 TCTTTGTTACTAAAAGCAGAAAGGT 57.125 32.000 0.00 0.00 35.12 3.50
2283 2573 8.967664 TCTTTGTTACTAAAAGCAGAAAGGTA 57.032 30.769 0.00 0.00 35.12 3.08
2284 2574 8.833493 TCTTTGTTACTAAAAGCAGAAAGGTAC 58.167 33.333 0.00 0.00 35.12 3.34
2285 2575 8.508883 TTTGTTACTAAAAGCAGAAAGGTACA 57.491 30.769 0.00 0.00 0.00 2.90
2286 2576 8.685838 TTGTTACTAAAAGCAGAAAGGTACAT 57.314 30.769 0.00 0.00 0.00 2.29
2287 2577 8.685838 TGTTACTAAAAGCAGAAAGGTACATT 57.314 30.769 0.00 0.00 0.00 2.71
2288 2578 9.781633 TGTTACTAAAAGCAGAAAGGTACATTA 57.218 29.630 0.00 0.00 0.00 1.90
2292 2582 8.947115 ACTAAAAGCAGAAAGGTACATTATCAC 58.053 33.333 0.00 0.00 0.00 3.06
2293 2583 9.167311 CTAAAAGCAGAAAGGTACATTATCACT 57.833 33.333 0.00 0.00 0.00 3.41
2294 2584 8.409358 AAAAGCAGAAAGGTACATTATCACTT 57.591 30.769 0.00 0.50 0.00 3.16
2295 2585 7.617041 AAGCAGAAAGGTACATTATCACTTC 57.383 36.000 0.00 0.00 0.00 3.01
2296 2586 6.951971 AGCAGAAAGGTACATTATCACTTCT 58.048 36.000 0.00 0.00 0.00 2.85
2297 2587 7.044798 AGCAGAAAGGTACATTATCACTTCTC 58.955 38.462 0.00 0.00 0.00 2.87
2298 2588 6.818644 GCAGAAAGGTACATTATCACTTCTCA 59.181 38.462 0.00 0.00 0.00 3.27
2299 2589 7.497249 GCAGAAAGGTACATTATCACTTCTCAT 59.503 37.037 0.00 0.00 0.00 2.90
2300 2590 8.824781 CAGAAAGGTACATTATCACTTCTCATG 58.175 37.037 0.00 0.00 0.00 3.07
2301 2591 8.543774 AGAAAGGTACATTATCACTTCTCATGT 58.456 33.333 0.00 0.00 32.80 3.21
2302 2592 9.817809 GAAAGGTACATTATCACTTCTCATGTA 57.182 33.333 0.00 0.00 30.70 2.29
2309 2599 9.261180 ACATTATCACTTCTCATGTAAATACCG 57.739 33.333 0.00 0.00 0.00 4.02
2310 2600 8.712363 CATTATCACTTCTCATGTAAATACCGG 58.288 37.037 0.00 0.00 0.00 5.28
2311 2601 4.439057 TCACTTCTCATGTAAATACCGGC 58.561 43.478 0.00 0.00 0.00 6.13
2312 2602 4.161565 TCACTTCTCATGTAAATACCGGCT 59.838 41.667 0.00 0.00 0.00 5.52
2313 2603 4.508124 CACTTCTCATGTAAATACCGGCTC 59.492 45.833 0.00 0.00 0.00 4.70
2314 2604 3.364889 TCTCATGTAAATACCGGCTCG 57.635 47.619 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.543790 GGCTTAATATCCCCATCAACCAAAT 59.456 40.000 0.00 0.00 0.00 2.32
284 287 4.872691 GCATAGTATTGTTCAGCACACTCT 59.127 41.667 0.00 0.00 33.98 3.24
479 482 4.367386 AGAAACAAGCATCAATAGCAGC 57.633 40.909 0.00 0.00 0.00 5.25
480 483 4.561606 GCAAGAAACAAGCATCAATAGCAG 59.438 41.667 0.00 0.00 0.00 4.24
483 486 4.561606 GCAGCAAGAAACAAGCATCAATAG 59.438 41.667 0.00 0.00 0.00 1.73
484 487 4.219070 AGCAGCAAGAAACAAGCATCAATA 59.781 37.500 0.00 0.00 0.00 1.90
485 488 3.006537 AGCAGCAAGAAACAAGCATCAAT 59.993 39.130 0.00 0.00 0.00 2.57
487 490 1.958579 AGCAGCAAGAAACAAGCATCA 59.041 42.857 0.00 0.00 0.00 3.07
488 491 2.325761 CAGCAGCAAGAAACAAGCATC 58.674 47.619 0.00 0.00 0.00 3.91
489 492 1.604693 GCAGCAGCAAGAAACAAGCAT 60.605 47.619 0.00 0.00 41.58 3.79
490 493 0.249155 GCAGCAGCAAGAAACAAGCA 60.249 50.000 0.00 0.00 41.58 3.91
491 494 0.031721 AGCAGCAGCAAGAAACAAGC 59.968 50.000 3.17 0.00 45.49 4.01
492 495 1.767289 CAGCAGCAGCAAGAAACAAG 58.233 50.000 3.17 0.00 45.49 3.16
493 496 0.249155 GCAGCAGCAGCAAGAAACAA 60.249 50.000 4.63 0.00 45.49 2.83
494 497 1.105167 AGCAGCAGCAGCAAGAAACA 61.105 50.000 12.92 0.00 45.49 2.83
495 498 0.663568 CAGCAGCAGCAGCAAGAAAC 60.664 55.000 12.92 0.00 45.49 2.78
497 500 3.351450 CAGCAGCAGCAGCAAGAA 58.649 55.556 12.92 0.00 45.49 2.52
503 506 1.002359 CATCAATAGCAGCAGCAGCAG 60.002 52.381 12.92 0.00 45.49 4.24
504 507 1.021968 CATCAATAGCAGCAGCAGCA 58.978 50.000 12.92 0.00 45.49 4.41
505 508 0.317938 GCATCAATAGCAGCAGCAGC 60.318 55.000 3.17 0.46 45.49 5.25
506 509 1.309950 AGCATCAATAGCAGCAGCAG 58.690 50.000 3.17 0.00 45.49 4.24
570 581 2.092753 AGCAGTAGCATGGTAGCAACAT 60.093 45.455 15.84 0.00 45.49 2.71
571 582 1.278985 AGCAGTAGCATGGTAGCAACA 59.721 47.619 15.84 0.00 45.49 3.33
572 583 1.667724 CAGCAGTAGCATGGTAGCAAC 59.332 52.381 15.84 3.59 45.49 4.17
573 584 1.278985 ACAGCAGTAGCATGGTAGCAA 59.721 47.619 15.84 0.00 45.49 3.91
574 585 0.904649 ACAGCAGTAGCATGGTAGCA 59.095 50.000 15.84 0.00 45.49 3.49
575 586 1.667724 CAACAGCAGTAGCATGGTAGC 59.332 52.381 4.51 6.46 45.49 3.58
576 587 2.977914 ACAACAGCAGTAGCATGGTAG 58.022 47.619 4.51 0.00 45.49 3.18
577 588 3.073678 CAACAACAGCAGTAGCATGGTA 58.926 45.455 0.00 0.00 45.49 3.25
578 589 1.881973 CAACAACAGCAGTAGCATGGT 59.118 47.619 1.62 1.62 45.49 3.55
579 590 1.401931 GCAACAACAGCAGTAGCATGG 60.402 52.381 0.00 0.00 45.49 3.66
580 591 1.538512 AGCAACAACAGCAGTAGCATG 59.461 47.619 0.00 0.00 45.49 4.06
581 592 1.901591 AGCAACAACAGCAGTAGCAT 58.098 45.000 0.00 0.00 45.49 3.79
582 593 2.143122 GTAGCAACAACAGCAGTAGCA 58.857 47.619 0.00 0.00 45.49 3.49
583 594 1.464997 GGTAGCAACAACAGCAGTAGC 59.535 52.381 0.00 0.00 42.56 3.58
584 595 2.766313 TGGTAGCAACAACAGCAGTAG 58.234 47.619 0.00 0.00 0.00 2.57
585 596 2.920724 TGGTAGCAACAACAGCAGTA 57.079 45.000 0.00 0.00 0.00 2.74
586 597 1.881973 CATGGTAGCAACAACAGCAGT 59.118 47.619 0.00 0.00 0.00 4.40
587 598 1.401931 GCATGGTAGCAACAACAGCAG 60.402 52.381 0.00 0.00 0.00 4.24
588 599 0.597568 GCATGGTAGCAACAACAGCA 59.402 50.000 0.00 0.00 0.00 4.41
589 600 0.883833 AGCATGGTAGCAACAACAGC 59.116 50.000 0.00 0.00 36.85 4.40
590 601 3.125829 CAGTAGCATGGTAGCAACAACAG 59.874 47.826 4.51 0.00 36.85 3.16
591 602 3.073678 CAGTAGCATGGTAGCAACAACA 58.926 45.455 4.51 0.00 36.85 3.33
592 603 2.159517 GCAGTAGCATGGTAGCAACAAC 60.160 50.000 4.51 0.00 41.58 3.32
596 607 2.013563 GCAGCAGTAGCATGGTAGCAA 61.014 52.381 15.84 0.00 45.49 3.91
968 1021 3.959495 ACCTTATGAGCACATCCCATT 57.041 42.857 0.00 0.00 37.87 3.16
969 1022 3.202818 TGAACCTTATGAGCACATCCCAT 59.797 43.478 0.00 0.00 37.87 4.00
970 1023 2.575735 TGAACCTTATGAGCACATCCCA 59.424 45.455 0.00 0.00 37.87 4.37
972 1025 4.009675 TGTTGAACCTTATGAGCACATCC 58.990 43.478 0.00 0.00 37.87 3.51
974 1027 6.319658 CCTATTGTTGAACCTTATGAGCACAT 59.680 38.462 1.31 1.31 40.16 3.21
975 1028 5.647658 CCTATTGTTGAACCTTATGAGCACA 59.352 40.000 0.00 0.00 0.00 4.57
976 1029 5.880332 TCCTATTGTTGAACCTTATGAGCAC 59.120 40.000 0.00 0.00 0.00 4.40
977 1030 6.061022 TCCTATTGTTGAACCTTATGAGCA 57.939 37.500 0.00 0.00 0.00 4.26
978 1031 6.543831 ACATCCTATTGTTGAACCTTATGAGC 59.456 38.462 0.00 0.00 0.00 4.26
979 1032 8.511604 AACATCCTATTGTTGAACCTTATGAG 57.488 34.615 0.00 0.00 38.37 2.90
1100 1161 6.258160 AGATAAACAACGCTTGCATAATCAC 58.742 36.000 0.00 0.00 0.00 3.06
1217 1279 2.170166 CTCTCACTCTTGCACTCCTCT 58.830 52.381 0.00 0.00 0.00 3.69
1281 1349 7.729431 TCCTCATACTCAATCTCATCTTCATCT 59.271 37.037 0.00 0.00 0.00 2.90
1632 1700 4.634883 AGATGACAAGATGTTAGCAGCAAG 59.365 41.667 0.00 0.00 32.61 4.01
1898 2188 1.149627 TTTGGCCACCTACTTGCGT 59.850 52.632 3.88 0.00 0.00 5.24
1953 2243 2.611518 CTCGAAAGGCAGTGGTTCTAG 58.388 52.381 0.00 0.00 0.00 2.43
1956 2246 0.603975 AGCTCGAAAGGCAGTGGTTC 60.604 55.000 0.00 0.00 0.00 3.62
1957 2247 0.685097 TAGCTCGAAAGGCAGTGGTT 59.315 50.000 0.00 0.00 0.00 3.67
1965 2255 2.675348 CAAGAGGCTTTAGCTCGAAAGG 59.325 50.000 10.30 0.00 41.70 3.11
1966 2256 2.675348 CCAAGAGGCTTTAGCTCGAAAG 59.325 50.000 4.83 4.83 41.70 2.62
1967 2257 2.301870 TCCAAGAGGCTTTAGCTCGAAA 59.698 45.455 0.00 0.00 41.70 3.46
1968 2258 1.899814 TCCAAGAGGCTTTAGCTCGAA 59.100 47.619 0.00 0.00 41.70 3.71
1969 2259 1.204941 GTCCAAGAGGCTTTAGCTCGA 59.795 52.381 0.00 0.00 41.70 4.04
1970 2260 1.205893 AGTCCAAGAGGCTTTAGCTCG 59.794 52.381 0.00 0.00 41.70 5.03
1971 2261 3.266636 GAAGTCCAAGAGGCTTTAGCTC 58.733 50.000 0.00 0.00 41.70 4.09
1972 2262 2.026729 GGAAGTCCAAGAGGCTTTAGCT 60.027 50.000 1.26 0.00 37.29 3.32
1973 2263 2.026729 AGGAAGTCCAAGAGGCTTTAGC 60.027 50.000 0.00 0.00 38.89 3.09
1974 2264 3.261897 TCAGGAAGTCCAAGAGGCTTTAG 59.738 47.826 0.00 0.00 38.89 1.85
1975 2265 3.248024 TCAGGAAGTCCAAGAGGCTTTA 58.752 45.455 0.00 0.00 38.89 1.85
1976 2266 2.057922 TCAGGAAGTCCAAGAGGCTTT 58.942 47.619 0.00 0.00 38.89 3.51
1977 2267 1.734655 TCAGGAAGTCCAAGAGGCTT 58.265 50.000 0.00 0.00 38.89 4.35
1978 2268 1.734655 TTCAGGAAGTCCAAGAGGCT 58.265 50.000 0.00 0.00 38.89 4.58
1979 2269 2.238395 AGATTCAGGAAGTCCAAGAGGC 59.762 50.000 0.00 0.00 38.89 4.70
1980 2270 4.566426 AAGATTCAGGAAGTCCAAGAGG 57.434 45.455 0.00 0.00 38.89 3.69
1981 2271 5.767168 ACAAAAGATTCAGGAAGTCCAAGAG 59.233 40.000 0.00 0.00 38.89 2.85
1982 2272 5.694995 ACAAAAGATTCAGGAAGTCCAAGA 58.305 37.500 0.00 0.00 38.89 3.02
1983 2273 6.183360 ACAACAAAAGATTCAGGAAGTCCAAG 60.183 38.462 0.00 0.00 38.89 3.61
1984 2274 5.656416 ACAACAAAAGATTCAGGAAGTCCAA 59.344 36.000 0.00 0.00 38.89 3.53
1985 2275 5.200483 ACAACAAAAGATTCAGGAAGTCCA 58.800 37.500 0.00 0.00 38.89 4.02
1986 2276 5.774498 ACAACAAAAGATTCAGGAAGTCC 57.226 39.130 0.00 0.00 0.00 3.85
1987 2277 7.220875 GTGAAACAACAAAAGATTCAGGAAGTC 59.779 37.037 0.00 0.00 36.32 3.01
1988 2278 7.035612 GTGAAACAACAAAAGATTCAGGAAGT 58.964 34.615 0.00 0.00 36.32 3.01
1989 2279 7.455331 GTGAAACAACAAAAGATTCAGGAAG 57.545 36.000 0.00 0.00 36.32 3.46
2007 2297 0.819259 TGTGAGCCAGGCTGTGAAAC 60.819 55.000 22.26 9.62 39.88 2.78
2008 2298 0.106769 TTGTGAGCCAGGCTGTGAAA 60.107 50.000 22.26 4.94 39.88 2.69
2009 2299 0.535780 CTTGTGAGCCAGGCTGTGAA 60.536 55.000 22.26 7.07 39.88 3.18
2010 2300 1.071987 CTTGTGAGCCAGGCTGTGA 59.928 57.895 22.26 0.00 39.88 3.58
2011 2301 2.623915 GCTTGTGAGCCAGGCTGTG 61.624 63.158 22.26 5.03 42.57 3.66
2012 2302 2.282040 GCTTGTGAGCCAGGCTGT 60.282 61.111 22.26 0.00 42.57 4.40
2013 2303 3.429141 CGCTTGTGAGCCAGGCTG 61.429 66.667 22.26 7.75 46.42 4.85
2014 2304 4.711949 CCGCTTGTGAGCCAGGCT 62.712 66.667 16.12 16.12 46.42 4.58
2015 2305 3.984193 ATCCGCTTGTGAGCCAGGC 62.984 63.158 1.84 1.84 46.42 4.85
2016 2306 1.817099 GATCCGCTTGTGAGCCAGG 60.817 63.158 0.00 0.00 46.42 4.45
2017 2307 1.088340 CAGATCCGCTTGTGAGCCAG 61.088 60.000 0.00 0.00 46.42 4.85
2018 2308 1.078918 CAGATCCGCTTGTGAGCCA 60.079 57.895 0.00 0.00 46.42 4.75
2019 2309 1.086634 GTCAGATCCGCTTGTGAGCC 61.087 60.000 0.00 0.00 46.42 4.70
2020 2310 0.390340 TGTCAGATCCGCTTGTGAGC 60.390 55.000 0.00 0.00 45.65 4.26
2021 2311 1.203287 TCTGTCAGATCCGCTTGTGAG 59.797 52.381 0.00 0.00 0.00 3.51
2022 2312 1.256812 TCTGTCAGATCCGCTTGTGA 58.743 50.000 0.00 0.00 0.00 3.58
2023 2313 2.084610 TTCTGTCAGATCCGCTTGTG 57.915 50.000 2.68 0.00 0.00 3.33
2024 2314 2.625737 CATTCTGTCAGATCCGCTTGT 58.374 47.619 2.68 0.00 0.00 3.16
2025 2315 1.938577 CCATTCTGTCAGATCCGCTTG 59.061 52.381 2.68 0.00 0.00 4.01
2026 2316 1.745141 GCCATTCTGTCAGATCCGCTT 60.745 52.381 2.68 0.00 0.00 4.68
2027 2317 0.179062 GCCATTCTGTCAGATCCGCT 60.179 55.000 2.68 0.00 0.00 5.52
2028 2318 0.462581 TGCCATTCTGTCAGATCCGC 60.463 55.000 2.68 6.05 0.00 5.54
2029 2319 1.871676 CATGCCATTCTGTCAGATCCG 59.128 52.381 2.68 0.00 0.00 4.18
2030 2320 2.228059 CCATGCCATTCTGTCAGATCC 58.772 52.381 2.68 0.00 0.00 3.36
2031 2321 2.928334 ACCATGCCATTCTGTCAGATC 58.072 47.619 2.68 0.00 0.00 2.75
2032 2322 3.377253 AACCATGCCATTCTGTCAGAT 57.623 42.857 2.68 0.00 0.00 2.90
2033 2323 2.885135 AACCATGCCATTCTGTCAGA 57.115 45.000 0.00 0.00 0.00 3.27
2034 2324 6.889301 ATTATAACCATGCCATTCTGTCAG 57.111 37.500 0.00 0.00 0.00 3.51
2035 2325 7.341512 TCAAATTATAACCATGCCATTCTGTCA 59.658 33.333 0.00 0.00 0.00 3.58
2036 2326 7.649306 GTCAAATTATAACCATGCCATTCTGTC 59.351 37.037 0.00 0.00 0.00 3.51
2037 2327 7.123997 TGTCAAATTATAACCATGCCATTCTGT 59.876 33.333 0.00 0.00 0.00 3.41
2038 2328 7.490840 TGTCAAATTATAACCATGCCATTCTG 58.509 34.615 0.00 0.00 0.00 3.02
2039 2329 7.658525 TGTCAAATTATAACCATGCCATTCT 57.341 32.000 0.00 0.00 0.00 2.40
2040 2330 6.421801 GCTGTCAAATTATAACCATGCCATTC 59.578 38.462 0.00 0.00 0.00 2.67
2041 2331 6.127111 TGCTGTCAAATTATAACCATGCCATT 60.127 34.615 0.00 0.00 0.00 3.16
2042 2332 5.363292 TGCTGTCAAATTATAACCATGCCAT 59.637 36.000 0.00 0.00 0.00 4.40
2043 2333 4.708909 TGCTGTCAAATTATAACCATGCCA 59.291 37.500 0.00 0.00 0.00 4.92
2044 2334 5.043248 GTGCTGTCAAATTATAACCATGCC 58.957 41.667 0.00 0.00 0.00 4.40
2045 2335 5.894807 AGTGCTGTCAAATTATAACCATGC 58.105 37.500 0.00 0.00 0.00 4.06
2046 2336 7.537715 TGAAGTGCTGTCAAATTATAACCATG 58.462 34.615 0.00 0.00 0.00 3.66
2047 2337 7.701539 TGAAGTGCTGTCAAATTATAACCAT 57.298 32.000 0.00 0.00 0.00 3.55
2048 2338 7.367285 GTTGAAGTGCTGTCAAATTATAACCA 58.633 34.615 0.00 0.00 36.77 3.67
2049 2339 6.523201 CGTTGAAGTGCTGTCAAATTATAACC 59.477 38.462 0.00 0.00 36.77 2.85
2050 2340 6.032460 GCGTTGAAGTGCTGTCAAATTATAAC 59.968 38.462 0.00 0.00 36.77 1.89
2051 2341 6.083630 GCGTTGAAGTGCTGTCAAATTATAA 58.916 36.000 0.00 0.00 36.77 0.98
2052 2342 5.391523 GGCGTTGAAGTGCTGTCAAATTATA 60.392 40.000 0.00 0.00 36.77 0.98
2053 2343 4.475944 GCGTTGAAGTGCTGTCAAATTAT 58.524 39.130 0.00 0.00 36.77 1.28
2054 2344 3.304391 GGCGTTGAAGTGCTGTCAAATTA 60.304 43.478 0.00 0.00 36.77 1.40
2055 2345 2.543653 GGCGTTGAAGTGCTGTCAAATT 60.544 45.455 0.00 0.00 36.77 1.82
2056 2346 1.001378 GGCGTTGAAGTGCTGTCAAAT 60.001 47.619 0.00 0.00 36.77 2.32
2057 2347 0.380378 GGCGTTGAAGTGCTGTCAAA 59.620 50.000 0.00 0.00 36.77 2.69
2058 2348 0.746204 TGGCGTTGAAGTGCTGTCAA 60.746 50.000 0.00 0.00 32.62 3.18
2059 2349 0.534877 ATGGCGTTGAAGTGCTGTCA 60.535 50.000 0.00 0.00 0.00 3.58
2060 2350 0.110056 CATGGCGTTGAAGTGCTGTC 60.110 55.000 0.00 0.00 0.00 3.51
2061 2351 0.819259 ACATGGCGTTGAAGTGCTGT 60.819 50.000 0.00 0.00 0.00 4.40
2062 2352 0.386352 CACATGGCGTTGAAGTGCTG 60.386 55.000 0.00 0.00 0.00 4.41
2063 2353 1.951510 CACATGGCGTTGAAGTGCT 59.048 52.632 0.00 0.00 0.00 4.40
2064 2354 4.539152 CACATGGCGTTGAAGTGC 57.461 55.556 0.00 0.00 0.00 4.40
2065 2355 4.539152 GCACATGGCGTTGAAGTG 57.461 55.556 0.00 0.00 0.00 3.16
2074 2364 4.444536 ACATGGATAAATTTGCACATGGC 58.555 39.130 22.99 0.00 39.83 4.40
2075 2365 7.980662 TCTTAACATGGATAAATTTGCACATGG 59.019 33.333 22.99 12.60 39.83 3.66
2076 2366 8.929827 TCTTAACATGGATAAATTTGCACATG 57.070 30.769 20.05 20.05 40.94 3.21
2078 2368 9.941325 AATTCTTAACATGGATAAATTTGCACA 57.059 25.926 0.00 0.00 0.00 4.57
2087 2377 9.507329 GCTGGAGATAATTCTTAACATGGATAA 57.493 33.333 0.00 0.00 30.30 1.75
2088 2378 8.659527 TGCTGGAGATAATTCTTAACATGGATA 58.340 33.333 0.00 0.00 30.30 2.59
2089 2379 7.520798 TGCTGGAGATAATTCTTAACATGGAT 58.479 34.615 0.00 0.00 30.30 3.41
2090 2380 6.899089 TGCTGGAGATAATTCTTAACATGGA 58.101 36.000 0.00 0.00 30.30 3.41
2091 2381 7.420800 GTTGCTGGAGATAATTCTTAACATGG 58.579 38.462 0.00 0.00 30.30 3.66
2092 2382 7.284034 AGGTTGCTGGAGATAATTCTTAACATG 59.716 37.037 0.00 0.00 30.30 3.21
2093 2383 7.349598 AGGTTGCTGGAGATAATTCTTAACAT 58.650 34.615 0.00 0.00 30.30 2.71
2094 2384 6.721318 AGGTTGCTGGAGATAATTCTTAACA 58.279 36.000 0.00 0.00 30.30 2.41
2095 2385 7.051000 AGAGGTTGCTGGAGATAATTCTTAAC 58.949 38.462 0.00 0.00 30.30 2.01
2096 2386 7.200434 AGAGGTTGCTGGAGATAATTCTTAA 57.800 36.000 0.00 0.00 30.30 1.85
2097 2387 6.814954 AGAGGTTGCTGGAGATAATTCTTA 57.185 37.500 0.00 0.00 30.30 2.10
2098 2388 5.707066 AGAGGTTGCTGGAGATAATTCTT 57.293 39.130 0.00 0.00 30.30 2.52
2099 2389 5.428131 AGAAGAGGTTGCTGGAGATAATTCT 59.572 40.000 0.00 0.00 33.88 2.40
2100 2390 5.679601 AGAAGAGGTTGCTGGAGATAATTC 58.320 41.667 0.00 0.00 0.00 2.17
2101 2391 5.190528 TGAGAAGAGGTTGCTGGAGATAATT 59.809 40.000 0.00 0.00 0.00 1.40
2102 2392 4.718774 TGAGAAGAGGTTGCTGGAGATAAT 59.281 41.667 0.00 0.00 0.00 1.28
2103 2393 4.096681 TGAGAAGAGGTTGCTGGAGATAA 58.903 43.478 0.00 0.00 0.00 1.75
2104 2394 3.703556 CTGAGAAGAGGTTGCTGGAGATA 59.296 47.826 0.00 0.00 0.00 1.98
2105 2395 2.500910 CTGAGAAGAGGTTGCTGGAGAT 59.499 50.000 0.00 0.00 0.00 2.75
2106 2396 1.898472 CTGAGAAGAGGTTGCTGGAGA 59.102 52.381 0.00 0.00 0.00 3.71
2107 2397 1.622811 ACTGAGAAGAGGTTGCTGGAG 59.377 52.381 0.00 0.00 0.00 3.86
2108 2398 1.722034 ACTGAGAAGAGGTTGCTGGA 58.278 50.000 0.00 0.00 0.00 3.86
2109 2399 2.551459 CAAACTGAGAAGAGGTTGCTGG 59.449 50.000 0.00 0.00 33.98 4.85
2110 2400 3.470709 TCAAACTGAGAAGAGGTTGCTG 58.529 45.455 0.00 0.00 40.02 4.41
2111 2401 3.845781 TCAAACTGAGAAGAGGTTGCT 57.154 42.857 0.00 0.00 40.02 3.91
2112 2402 4.153835 CAGATCAAACTGAGAAGAGGTTGC 59.846 45.833 0.00 0.00 40.02 4.17
2113 2403 5.303971 ACAGATCAAACTGAGAAGAGGTTG 58.696 41.667 0.00 0.00 41.33 3.77
2114 2404 5.559148 ACAGATCAAACTGAGAAGAGGTT 57.441 39.130 0.00 0.00 40.63 3.50
2115 2405 5.303971 CAACAGATCAAACTGAGAAGAGGT 58.696 41.667 0.00 0.00 40.63 3.85
2116 2406 4.694509 CCAACAGATCAAACTGAGAAGAGG 59.305 45.833 0.00 0.00 40.63 3.69
2117 2407 5.545588 TCCAACAGATCAAACTGAGAAGAG 58.454 41.667 0.00 0.00 40.63 2.85
2118 2408 5.551305 TCCAACAGATCAAACTGAGAAGA 57.449 39.130 0.00 0.00 40.63 2.87
2119 2409 6.814506 ATTCCAACAGATCAAACTGAGAAG 57.185 37.500 0.00 0.00 40.63 2.85
2145 2435 8.391106 GCATGATGAACTACGAAAGAACTAAAT 58.609 33.333 0.00 0.00 0.00 1.40
2146 2436 7.602644 AGCATGATGAACTACGAAAGAACTAAA 59.397 33.333 0.00 0.00 0.00 1.85
2147 2437 7.097192 AGCATGATGAACTACGAAAGAACTAA 58.903 34.615 0.00 0.00 0.00 2.24
2148 2438 6.631016 AGCATGATGAACTACGAAAGAACTA 58.369 36.000 0.00 0.00 0.00 2.24
2149 2439 5.482908 AGCATGATGAACTACGAAAGAACT 58.517 37.500 0.00 0.00 0.00 3.01
2150 2440 5.786401 AGCATGATGAACTACGAAAGAAC 57.214 39.130 0.00 0.00 0.00 3.01
2151 2441 5.122239 CCAAGCATGATGAACTACGAAAGAA 59.878 40.000 0.00 0.00 0.00 2.52
2152 2442 4.631377 CCAAGCATGATGAACTACGAAAGA 59.369 41.667 0.00 0.00 0.00 2.52
2153 2443 4.201851 CCCAAGCATGATGAACTACGAAAG 60.202 45.833 0.00 0.00 0.00 2.62
2154 2444 3.689161 CCCAAGCATGATGAACTACGAAA 59.311 43.478 0.00 0.00 0.00 3.46
2155 2445 3.270027 CCCAAGCATGATGAACTACGAA 58.730 45.455 0.00 0.00 0.00 3.85
2156 2446 2.236146 ACCCAAGCATGATGAACTACGA 59.764 45.455 0.00 0.00 0.00 3.43
2157 2447 2.632377 ACCCAAGCATGATGAACTACG 58.368 47.619 0.00 0.00 0.00 3.51
2158 2448 4.770795 AGTACCCAAGCATGATGAACTAC 58.229 43.478 0.00 0.00 0.00 2.73
2159 2449 4.141711 GGAGTACCCAAGCATGATGAACTA 60.142 45.833 0.00 0.00 34.14 2.24
2160 2450 3.370953 GGAGTACCCAAGCATGATGAACT 60.371 47.826 0.00 0.00 34.14 3.01
2161 2451 2.945668 GGAGTACCCAAGCATGATGAAC 59.054 50.000 0.00 0.00 34.14 3.18
2162 2452 2.419990 CGGAGTACCCAAGCATGATGAA 60.420 50.000 0.00 0.00 34.14 2.57
2163 2453 1.138859 CGGAGTACCCAAGCATGATGA 59.861 52.381 0.00 0.00 34.14 2.92
2164 2454 1.134401 ACGGAGTACCCAAGCATGATG 60.134 52.381 0.00 0.00 41.94 3.07
2165 2455 1.134401 CACGGAGTACCCAAGCATGAT 60.134 52.381 0.00 0.00 41.61 2.45
2166 2456 0.249120 CACGGAGTACCCAAGCATGA 59.751 55.000 0.00 0.00 41.61 3.07
2167 2457 1.369091 GCACGGAGTACCCAAGCATG 61.369 60.000 0.00 0.00 41.61 4.06
2168 2458 1.078426 GCACGGAGTACCCAAGCAT 60.078 57.895 0.00 0.00 41.61 3.79
2169 2459 0.901114 TAGCACGGAGTACCCAAGCA 60.901 55.000 12.97 2.18 41.61 3.91
2170 2460 0.459759 GTAGCACGGAGTACCCAAGC 60.460 60.000 0.00 0.00 41.61 4.01
2171 2461 0.892755 TGTAGCACGGAGTACCCAAG 59.107 55.000 0.00 0.00 41.61 3.61
2172 2462 1.479323 GATGTAGCACGGAGTACCCAA 59.521 52.381 0.00 0.00 41.61 4.12
2173 2463 1.108776 GATGTAGCACGGAGTACCCA 58.891 55.000 0.00 0.00 41.61 4.51
2174 2464 0.388294 GGATGTAGCACGGAGTACCC 59.612 60.000 0.00 0.00 41.61 3.69
2175 2465 0.030369 CGGATGTAGCACGGAGTACC 59.970 60.000 0.00 0.00 41.61 3.34
2176 2466 1.019673 TCGGATGTAGCACGGAGTAC 58.980 55.000 0.00 0.00 41.61 2.73
2177 2467 1.753930 TTCGGATGTAGCACGGAGTA 58.246 50.000 0.00 0.00 41.61 2.59
2179 2469 1.491670 CATTCGGATGTAGCACGGAG 58.508 55.000 0.00 0.00 0.00 4.63
2180 2470 0.104120 CCATTCGGATGTAGCACGGA 59.896 55.000 2.31 0.00 0.00 4.69
2181 2471 0.104120 TCCATTCGGATGTAGCACGG 59.896 55.000 2.31 0.00 35.91 4.94
2182 2472 1.934589 TTCCATTCGGATGTAGCACG 58.065 50.000 2.31 0.00 42.41 5.34
2183 2473 4.883083 TCTATTCCATTCGGATGTAGCAC 58.117 43.478 2.31 0.00 42.41 4.40
2184 2474 5.545063 TTCTATTCCATTCGGATGTAGCA 57.455 39.130 2.31 0.00 42.41 3.49
2185 2475 6.402222 AGATTCTATTCCATTCGGATGTAGC 58.598 40.000 2.31 0.00 42.41 3.58
2186 2476 8.715998 CAAAGATTCTATTCCATTCGGATGTAG 58.284 37.037 2.31 0.00 42.41 2.74
2187 2477 8.428852 TCAAAGATTCTATTCCATTCGGATGTA 58.571 33.333 2.31 0.00 42.41 2.29
2188 2478 7.282585 TCAAAGATTCTATTCCATTCGGATGT 58.717 34.615 2.31 0.00 42.41 3.06
2189 2479 7.734924 TCAAAGATTCTATTCCATTCGGATG 57.265 36.000 0.00 0.00 42.41 3.51
2190 2480 8.159447 TGATCAAAGATTCTATTCCATTCGGAT 58.841 33.333 0.00 0.00 42.41 4.18
2191 2481 7.508687 TGATCAAAGATTCTATTCCATTCGGA 58.491 34.615 0.00 0.00 40.60 4.55
2192 2482 7.734924 TGATCAAAGATTCTATTCCATTCGG 57.265 36.000 0.00 0.00 0.00 4.30
2196 2486 9.430399 ACCAAATGATCAAAGATTCTATTCCAT 57.570 29.630 0.00 0.00 0.00 3.41
2197 2487 8.827832 ACCAAATGATCAAAGATTCTATTCCA 57.172 30.769 0.00 0.00 0.00 3.53
2203 2493 8.964772 CCTTCTTACCAAATGATCAAAGATTCT 58.035 33.333 0.00 0.00 0.00 2.40
2204 2494 8.960591 TCCTTCTTACCAAATGATCAAAGATTC 58.039 33.333 0.00 0.00 0.00 2.52
2205 2495 8.884124 TCCTTCTTACCAAATGATCAAAGATT 57.116 30.769 0.00 0.00 0.00 2.40
2206 2496 8.910944 CATCCTTCTTACCAAATGATCAAAGAT 58.089 33.333 0.00 0.00 0.00 2.40
2207 2497 7.148018 GCATCCTTCTTACCAAATGATCAAAGA 60.148 37.037 0.00 0.00 0.00 2.52
2208 2498 6.976925 GCATCCTTCTTACCAAATGATCAAAG 59.023 38.462 0.00 0.00 0.00 2.77
2209 2499 6.404623 CGCATCCTTCTTACCAAATGATCAAA 60.405 38.462 0.00 0.00 0.00 2.69
2210 2500 5.066375 CGCATCCTTCTTACCAAATGATCAA 59.934 40.000 0.00 0.00 0.00 2.57
2211 2501 4.576053 CGCATCCTTCTTACCAAATGATCA 59.424 41.667 0.00 0.00 0.00 2.92
2212 2502 4.576463 ACGCATCCTTCTTACCAAATGATC 59.424 41.667 0.00 0.00 0.00 2.92
2213 2503 4.526970 ACGCATCCTTCTTACCAAATGAT 58.473 39.130 0.00 0.00 0.00 2.45
2214 2504 3.938963 GACGCATCCTTCTTACCAAATGA 59.061 43.478 0.00 0.00 0.00 2.57
2215 2505 3.689161 TGACGCATCCTTCTTACCAAATG 59.311 43.478 0.00 0.00 0.00 2.32
2216 2506 3.689649 GTGACGCATCCTTCTTACCAAAT 59.310 43.478 0.00 0.00 0.00 2.32
2217 2507 3.071479 GTGACGCATCCTTCTTACCAAA 58.929 45.455 0.00 0.00 0.00 3.28
2218 2508 2.037902 TGTGACGCATCCTTCTTACCAA 59.962 45.455 0.00 0.00 0.00 3.67
2219 2509 1.621317 TGTGACGCATCCTTCTTACCA 59.379 47.619 0.00 0.00 0.00 3.25
2220 2510 2.380084 TGTGACGCATCCTTCTTACC 57.620 50.000 0.00 0.00 0.00 2.85
2221 2511 2.094417 GCTTGTGACGCATCCTTCTTAC 59.906 50.000 0.00 0.00 0.00 2.34
2222 2512 2.028112 AGCTTGTGACGCATCCTTCTTA 60.028 45.455 0.00 0.00 0.00 2.10
2223 2513 1.160137 GCTTGTGACGCATCCTTCTT 58.840 50.000 0.00 0.00 0.00 2.52
2224 2514 0.322975 AGCTTGTGACGCATCCTTCT 59.677 50.000 0.00 0.00 0.00 2.85
2225 2515 0.723981 GAGCTTGTGACGCATCCTTC 59.276 55.000 0.00 0.00 0.00 3.46
2226 2516 0.035317 TGAGCTTGTGACGCATCCTT 59.965 50.000 0.00 0.00 0.00 3.36
2227 2517 0.035317 TTGAGCTTGTGACGCATCCT 59.965 50.000 0.00 0.00 0.00 3.24
2228 2518 0.874390 TTTGAGCTTGTGACGCATCC 59.126 50.000 0.00 0.00 0.00 3.51
2229 2519 1.800586 TCTTTGAGCTTGTGACGCATC 59.199 47.619 0.00 0.00 0.00 3.91
2230 2520 1.882912 TCTTTGAGCTTGTGACGCAT 58.117 45.000 0.00 0.00 0.00 4.73
2231 2521 1.882912 ATCTTTGAGCTTGTGACGCA 58.117 45.000 0.00 0.00 0.00 5.24
2232 2522 2.977405 AATCTTTGAGCTTGTGACGC 57.023 45.000 0.00 0.00 0.00 5.19
2233 2523 4.472691 TGAAATCTTTGAGCTTGTGACG 57.527 40.909 0.00 0.00 0.00 4.35
2234 2524 6.005583 TGATGAAATCTTTGAGCTTGTGAC 57.994 37.500 0.00 0.00 45.81 3.67
2235 2525 6.657966 AGATGATGAAATCTTTGAGCTTGTGA 59.342 34.615 0.00 0.00 45.81 3.58
2236 2526 6.853720 AGATGATGAAATCTTTGAGCTTGTG 58.146 36.000 0.00 0.00 45.81 3.33
2237 2527 7.463961 AAGATGATGAAATCTTTGAGCTTGT 57.536 32.000 0.00 0.00 42.92 3.16
2250 2540 9.897744 CTGCTTTTAGTAACAAAGATGATGAAA 57.102 29.630 0.00 0.00 33.69 2.69
2251 2541 9.283768 TCTGCTTTTAGTAACAAAGATGATGAA 57.716 29.630 0.00 0.00 33.69 2.57
2252 2542 8.846943 TCTGCTTTTAGTAACAAAGATGATGA 57.153 30.769 0.00 0.00 33.69 2.92
2253 2543 9.897744 TTTCTGCTTTTAGTAACAAAGATGATG 57.102 29.630 0.00 0.00 33.69 3.07
2255 2545 8.567948 CCTTTCTGCTTTTAGTAACAAAGATGA 58.432 33.333 0.00 0.00 33.69 2.92
2256 2546 8.352942 ACCTTTCTGCTTTTAGTAACAAAGATG 58.647 33.333 0.00 0.00 33.69 2.90
2257 2547 8.465273 ACCTTTCTGCTTTTAGTAACAAAGAT 57.535 30.769 0.00 0.00 33.69 2.40
2258 2548 7.875327 ACCTTTCTGCTTTTAGTAACAAAGA 57.125 32.000 0.00 0.00 33.69 2.52
2259 2549 8.617809 TGTACCTTTCTGCTTTTAGTAACAAAG 58.382 33.333 0.00 0.00 34.80 2.77
2260 2550 8.508883 TGTACCTTTCTGCTTTTAGTAACAAA 57.491 30.769 0.00 0.00 0.00 2.83
2261 2551 8.685838 ATGTACCTTTCTGCTTTTAGTAACAA 57.314 30.769 0.00 0.00 0.00 2.83
2262 2552 8.685838 AATGTACCTTTCTGCTTTTAGTAACA 57.314 30.769 0.00 0.00 0.00 2.41
2266 2556 8.947115 GTGATAATGTACCTTTCTGCTTTTAGT 58.053 33.333 0.00 0.00 0.00 2.24
2267 2557 9.167311 AGTGATAATGTACCTTTCTGCTTTTAG 57.833 33.333 0.00 0.00 0.00 1.85
2268 2558 9.515226 AAGTGATAATGTACCTTTCTGCTTTTA 57.485 29.630 0.00 0.00 0.00 1.52
2269 2559 8.409358 AAGTGATAATGTACCTTTCTGCTTTT 57.591 30.769 0.00 0.00 0.00 2.27
2270 2560 7.885399 AGAAGTGATAATGTACCTTTCTGCTTT 59.115 33.333 0.00 0.00 0.00 3.51
2271 2561 7.398024 AGAAGTGATAATGTACCTTTCTGCTT 58.602 34.615 0.00 0.00 0.00 3.91
2272 2562 6.951971 AGAAGTGATAATGTACCTTTCTGCT 58.048 36.000 0.00 0.00 0.00 4.24
2273 2563 6.818644 TGAGAAGTGATAATGTACCTTTCTGC 59.181 38.462 0.00 0.00 0.00 4.26
2274 2564 8.824781 CATGAGAAGTGATAATGTACCTTTCTG 58.175 37.037 0.00 0.00 0.00 3.02
2275 2565 8.543774 ACATGAGAAGTGATAATGTACCTTTCT 58.456 33.333 0.00 0.00 29.93 2.52
2276 2566 8.723942 ACATGAGAAGTGATAATGTACCTTTC 57.276 34.615 0.00 0.00 29.93 2.62
2283 2573 9.261180 CGGTATTTACATGAGAAGTGATAATGT 57.739 33.333 0.00 0.00 35.70 2.71
2284 2574 8.712363 CCGGTATTTACATGAGAAGTGATAATG 58.288 37.037 0.00 0.00 0.00 1.90
2285 2575 7.387948 GCCGGTATTTACATGAGAAGTGATAAT 59.612 37.037 1.90 0.00 0.00 1.28
2286 2576 6.704493 GCCGGTATTTACATGAGAAGTGATAA 59.296 38.462 1.90 0.00 0.00 1.75
2287 2577 6.041637 AGCCGGTATTTACATGAGAAGTGATA 59.958 38.462 1.90 0.00 0.00 2.15
2288 2578 5.057149 GCCGGTATTTACATGAGAAGTGAT 58.943 41.667 1.90 0.00 0.00 3.06
2289 2579 4.161565 AGCCGGTATTTACATGAGAAGTGA 59.838 41.667 1.90 0.00 0.00 3.41
2290 2580 4.442706 AGCCGGTATTTACATGAGAAGTG 58.557 43.478 1.90 0.00 0.00 3.16
2291 2581 4.694339 GAGCCGGTATTTACATGAGAAGT 58.306 43.478 1.90 0.00 0.00 3.01
2292 2582 3.736252 CGAGCCGGTATTTACATGAGAAG 59.264 47.826 1.90 0.00 0.00 2.85
2293 2583 3.713288 CGAGCCGGTATTTACATGAGAA 58.287 45.455 1.90 0.00 0.00 2.87
2294 2584 3.364889 CGAGCCGGTATTTACATGAGA 57.635 47.619 1.90 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.