Multiple sequence alignment - TraesCS5B01G136400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G136400 chr5B 100.000 6171 0 0 1 6171 255977216 255971046 0.000000e+00 11396.0
1 TraesCS5B01G136400 chr5B 91.736 121 10 0 1 121 255993939 255993819 1.060000e-37 169.0
2 TraesCS5B01G136400 chr5B 83.529 85 11 2 122 205 421984873 421984955 6.630000e-10 76.8
3 TraesCS5B01G136400 chr5D 92.062 2948 136 26 124 3021 242621031 242623930 0.000000e+00 4058.0
4 TraesCS5B01G136400 chr5D 94.759 1431 41 8 3073 4484 242623932 242625347 0.000000e+00 2196.0
5 TraesCS5B01G136400 chr5D 98.371 921 14 1 5252 6171 242625941 242626861 0.000000e+00 1616.0
6 TraesCS5B01G136400 chr5D 94.718 568 20 6 4565 5130 242625344 242625903 0.000000e+00 874.0
7 TraesCS5B01G136400 chr5A 92.382 1969 81 16 2575 4486 309691065 309689109 0.000000e+00 2741.0
8 TraesCS5B01G136400 chr5A 89.197 2129 113 54 492 2564 309693097 309691030 0.000000e+00 2549.0
9 TraesCS5B01G136400 chr5A 93.143 1473 43 20 4569 5989 309689107 309687641 0.000000e+00 2108.0
10 TraesCS5B01G136400 chr5A 89.370 508 39 10 328 824 309694949 309694446 5.250000e-175 625.0
11 TraesCS5B01G136400 chr5A 99.444 180 1 0 5992 6171 309687473 309687294 1.660000e-85 327.0
12 TraesCS5B01G136400 chr5A 88.293 205 22 1 128 332 309772156 309771954 1.720000e-60 244.0
13 TraesCS5B01G136400 chr2D 82.353 323 52 4 178 496 94552870 94553191 6.090000e-70 276.0
14 TraesCS5B01G136400 chr2D 84.091 220 27 6 122 334 8304967 8304749 8.110000e-49 206.0
15 TraesCS5B01G136400 chr2D 91.597 119 10 0 1 119 485115349 485115231 1.380000e-36 165.0
16 TraesCS5B01G136400 chr2D 90.083 121 12 0 1 121 118932195 118932075 2.300000e-34 158.0
17 TraesCS5B01G136400 chr2D 88.679 53 2 3 5135 5185 477830602 477830552 1.860000e-05 62.1
18 TraesCS5B01G136400 chr7B 80.103 387 56 14 127 495 185271295 185270912 1.020000e-67 268.0
19 TraesCS5B01G136400 chr7B 94.000 50 2 1 5135 5184 734075059 734075107 2.390000e-09 75.0
20 TraesCS5B01G136400 chr7B 94.737 38 2 0 5216 5253 739917356 739917319 6.680000e-05 60.2
21 TraesCS5B01G136400 chr3D 79.188 394 54 17 122 493 170076927 170076540 1.330000e-61 248.0
22 TraesCS5B01G136400 chr3D 92.453 53 4 0 5135 5187 153507862 153507914 6.630000e-10 76.8
23 TraesCS5B01G136400 chr4B 78.249 354 55 14 121 460 489433313 489433658 2.250000e-49 207.0
24 TraesCS5B01G136400 chr4B 74.038 312 71 10 127 431 591121270 591120962 1.090000e-22 119.0
25 TraesCS5B01G136400 chr7D 92.623 122 7 2 1 121 438830203 438830083 2.290000e-39 174.0
26 TraesCS5B01G136400 chr7D 90.984 122 5 4 1 121 438758949 438758833 6.400000e-35 159.0
27 TraesCS5B01G136400 chr7D 95.050 101 4 1 4474 4574 146660343 146660442 2.300000e-34 158.0
28 TraesCS5B01G136400 chr7D 89.256 121 13 0 1 121 241772072 241772192 1.070000e-32 152.0
29 TraesCS5B01G136400 chr6D 89.209 139 14 1 1 139 115169468 115169331 8.220000e-39 172.0
30 TraesCS5B01G136400 chr6D 81.773 203 30 4 130 331 395534857 395534661 4.950000e-36 163.0
31 TraesCS5B01G136400 chr6D 88.372 129 13 2 1 128 135332477 135332604 2.980000e-33 154.0
32 TraesCS5B01G136400 chr6D 89.256 121 13 0 1 121 269366927 269367047 1.070000e-32 152.0
33 TraesCS5B01G136400 chr6D 100.000 28 0 0 5226 5253 30574199 30574226 1.100000e-02 52.8
34 TraesCS5B01G136400 chrUn 100.000 91 0 0 4479 4569 263385876 263385966 1.060000e-37 169.0
35 TraesCS5B01G136400 chrUn 100.000 91 0 0 4479 4569 344444682 344444772 1.060000e-37 169.0
36 TraesCS5B01G136400 chrUn 95.238 42 2 0 5146 5187 224674094 224674135 3.990000e-07 67.6
37 TraesCS5B01G136400 chrUn 95.238 42 2 0 5146 5187 340346534 340346493 3.990000e-07 67.6
38 TraesCS5B01G136400 chrUn 95.238 42 2 0 5146 5187 351703616 351703657 3.990000e-07 67.6
39 TraesCS5B01G136400 chr3B 100.000 91 0 0 4480 4570 42629626 42629536 1.060000e-37 169.0
40 TraesCS5B01G136400 chr3B 92.453 53 4 0 5135 5187 225174044 225174096 6.630000e-10 76.8
41 TraesCS5B01G136400 chr1B 100.000 91 0 0 4479 4569 58083794 58083704 1.060000e-37 169.0
42 TraesCS5B01G136400 chr1B 100.000 91 0 0 4479 4569 58109945 58109855 1.060000e-37 169.0
43 TraesCS5B01G136400 chr4D 97.895 95 2 0 4473 4567 58583606 58583512 1.380000e-36 165.0
44 TraesCS5B01G136400 chr4D 94.737 38 2 0 5216 5253 163791385 163791348 6.680000e-05 60.2
45 TraesCS5B01G136400 chr4A 97.917 96 0 2 4482 4577 589084326 589084419 1.380000e-36 165.0
46 TraesCS5B01G136400 chr1A 92.727 110 3 3 4458 4567 118503583 118503687 2.980000e-33 154.0
47 TraesCS5B01G136400 chr7A 100.000 35 0 0 5216 5250 734561073 734561107 1.440000e-06 65.8
48 TraesCS5B01G136400 chr3A 87.500 56 3 3 5135 5188 715927378 715927431 1.860000e-05 62.1
49 TraesCS5B01G136400 chr3A 80.488 82 5 4 5183 5253 13910318 13910237 1.100000e-02 52.8
50 TraesCS5B01G136400 chr2A 100.000 31 0 0 5216 5246 117390402 117390372 2.400000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G136400 chr5B 255971046 255977216 6170 True 11396 11396 100.0000 1 6171 1 chr5B.!!$R1 6170
1 TraesCS5B01G136400 chr5D 242621031 242626861 5830 False 2186 4058 94.9775 124 6171 4 chr5D.!!$F1 6047
2 TraesCS5B01G136400 chr5A 309687294 309694949 7655 True 1670 2741 92.7072 328 6171 5 chr5A.!!$R2 5843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.030399 ATAGGTTTAGGGGCGGGTCT 60.030 55.000 0.00 0.00 0.00 3.85 F
770 2467 0.030638 CTCAGGCCACAAAAACCACG 59.969 55.000 5.01 0.00 0.00 4.94 F
1081 2805 0.685660 GAAGACCGGGTCCACTCTTT 59.314 55.000 23.21 10.03 32.18 2.52 F
1430 3155 0.950555 TGAATGAACTTGCGAGCGCT 60.951 50.000 11.27 11.27 42.51 5.92 F
2131 3884 1.070134 TCTGCTTTCAGTTACACGCCT 59.930 47.619 0.00 0.00 41.10 5.52 F
2597 4355 1.268234 GCGCAACATAGTTCATCAGCC 60.268 52.381 0.30 0.00 0.00 4.85 F
3460 5244 0.662374 CAGCTGGCGCAAAAGAAGTG 60.662 55.000 10.83 0.00 39.10 3.16 F
3938 5738 1.070914 GTAGTTCCTATGCTGGAGGCC 59.929 57.143 0.00 0.00 40.92 5.19 F
4328 6131 1.073897 AGGCTCCAAGACTGCAACC 59.926 57.895 0.00 0.00 27.71 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 3675 0.386476 TGCAAGCACTTTGGCAGAAG 59.614 50.000 7.56 7.56 37.26 2.85 R
2595 4353 0.518195 TTTGCGGCTTAGTTTACGGC 59.482 50.000 0.00 0.00 0.00 5.68 R
2597 4355 2.477375 TGACTTTGCGGCTTAGTTTACG 59.523 45.455 0.00 0.00 0.00 3.18 R
3411 5195 2.417787 GCCTCAAATCCCTGCAAATGAC 60.418 50.000 0.00 0.00 0.00 3.06 R
3448 5232 0.248866 AAACCGCCACTTCTTTTGCG 60.249 50.000 0.00 0.00 46.14 4.85 R
4550 6370 0.178926 TGGTACTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 30.28 3.53 R
4552 6372 1.201424 ATTGGTACTCCCTCCGTTCC 58.799 55.000 0.00 0.00 0.00 3.62 R
5122 6950 2.954792 ACGGAGGGATTCTAATACCGT 58.045 47.619 0.00 0.00 44.60 4.83 R
5305 7176 5.620738 TGCTCAGGTAATCTTCTATGCTT 57.379 39.130 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.687200 TCCCATCTGGACACGGGG 60.687 66.667 0.00 0.00 38.61 5.73
26 27 3.797353 CCCATCTGGACACGGGGG 61.797 72.222 0.00 0.00 37.39 5.40
27 28 2.687200 CCATCTGGACACGGGGGA 60.687 66.667 0.00 0.00 37.39 4.81
28 29 2.297895 CCATCTGGACACGGGGGAA 61.298 63.158 0.00 0.00 37.39 3.97
29 30 1.682849 CATCTGGACACGGGGGAAA 59.317 57.895 0.00 0.00 0.00 3.13
30 31 0.392998 CATCTGGACACGGGGGAAAG 60.393 60.000 0.00 0.00 0.00 2.62
31 32 0.840722 ATCTGGACACGGGGGAAAGT 60.841 55.000 0.00 0.00 0.00 2.66
32 33 1.003718 CTGGACACGGGGGAAAGTC 60.004 63.158 0.00 0.00 0.00 3.01
33 34 1.460689 TGGACACGGGGGAAAGTCT 60.461 57.895 0.00 0.00 0.00 3.24
34 35 1.057851 TGGACACGGGGGAAAGTCTT 61.058 55.000 0.00 0.00 0.00 3.01
35 36 0.321387 GGACACGGGGGAAAGTCTTC 60.321 60.000 0.00 0.00 0.00 2.87
48 49 6.555812 GGAAAGTCTTCCGTTTTGTATCTT 57.444 37.500 0.00 0.00 41.89 2.40
49 50 6.600350 GGAAAGTCTTCCGTTTTGTATCTTC 58.400 40.000 0.00 0.00 41.89 2.87
50 51 6.204108 GGAAAGTCTTCCGTTTTGTATCTTCA 59.796 38.462 0.00 0.00 41.89 3.02
51 52 6.541111 AAGTCTTCCGTTTTGTATCTTCAC 57.459 37.500 0.00 0.00 0.00 3.18
52 53 4.684703 AGTCTTCCGTTTTGTATCTTCACG 59.315 41.667 0.00 0.00 0.00 4.35
54 55 2.520686 CCGTTTTGTATCTTCACGGC 57.479 50.000 0.00 0.00 43.58 5.68
55 56 1.129811 CCGTTTTGTATCTTCACGGCC 59.870 52.381 0.00 0.00 43.58 6.13
56 57 1.129811 CGTTTTGTATCTTCACGGCCC 59.870 52.381 0.00 0.00 0.00 5.80
57 58 2.156098 GTTTTGTATCTTCACGGCCCA 58.844 47.619 0.00 0.00 0.00 5.36
58 59 1.816074 TTTGTATCTTCACGGCCCAC 58.184 50.000 0.00 0.00 0.00 4.61
59 60 0.035820 TTGTATCTTCACGGCCCACC 60.036 55.000 0.00 0.00 0.00 4.61
60 61 1.195442 TGTATCTTCACGGCCCACCA 61.195 55.000 0.00 0.00 34.57 4.17
61 62 0.462047 GTATCTTCACGGCCCACCAG 60.462 60.000 0.00 0.00 34.57 4.00
62 63 0.907704 TATCTTCACGGCCCACCAGT 60.908 55.000 0.00 0.00 34.57 4.00
63 64 2.185310 ATCTTCACGGCCCACCAGTC 62.185 60.000 0.00 0.00 34.57 3.51
64 65 3.901797 CTTCACGGCCCACCAGTCC 62.902 68.421 0.00 0.00 34.57 3.85
75 76 3.991999 CCAGTCCGGTCTACGTCA 58.008 61.111 0.00 0.00 42.24 4.35
76 77 1.505353 CCAGTCCGGTCTACGTCAC 59.495 63.158 0.00 0.00 42.24 3.67
77 78 1.239296 CCAGTCCGGTCTACGTCACA 61.239 60.000 0.00 0.00 42.24 3.58
78 79 0.809385 CAGTCCGGTCTACGTCACAT 59.191 55.000 0.00 0.00 42.24 3.21
79 80 2.011947 CAGTCCGGTCTACGTCACATA 58.988 52.381 0.00 0.00 42.24 2.29
80 81 2.031807 CAGTCCGGTCTACGTCACATAG 59.968 54.545 0.00 0.00 42.24 2.23
81 82 1.019673 TCCGGTCTACGTCACATAGC 58.980 55.000 0.00 0.00 42.24 2.97
82 83 1.022735 CCGGTCTACGTCACATAGCT 58.977 55.000 0.00 0.00 42.24 3.32
83 84 1.002684 CCGGTCTACGTCACATAGCTC 60.003 57.143 0.00 0.00 42.24 4.09
84 85 1.332993 CGGTCTACGTCACATAGCTCG 60.333 57.143 0.00 0.00 37.93 5.03
85 86 1.002684 GGTCTACGTCACATAGCTCGG 60.003 57.143 0.00 0.00 0.00 4.63
86 87 1.938577 GTCTACGTCACATAGCTCGGA 59.061 52.381 0.00 0.00 0.00 4.55
87 88 2.548904 GTCTACGTCACATAGCTCGGAT 59.451 50.000 0.00 0.00 0.00 4.18
88 89 2.548480 TCTACGTCACATAGCTCGGATG 59.452 50.000 0.00 0.00 0.00 3.51
89 90 0.249073 ACGTCACATAGCTCGGATGC 60.249 55.000 0.00 0.00 0.00 3.91
90 91 0.941463 CGTCACATAGCTCGGATGCC 60.941 60.000 0.00 0.00 0.00 4.40
91 92 0.390860 GTCACATAGCTCGGATGCCT 59.609 55.000 0.00 0.00 0.00 4.75
92 93 0.390492 TCACATAGCTCGGATGCCTG 59.610 55.000 0.00 0.00 0.00 4.85
93 94 0.390492 CACATAGCTCGGATGCCTGA 59.610 55.000 0.00 0.00 0.00 3.86
94 95 0.678395 ACATAGCTCGGATGCCTGAG 59.322 55.000 0.00 0.00 46.27 3.35
95 96 0.037512 CATAGCTCGGATGCCTGAGG 60.038 60.000 0.00 0.00 44.23 3.86
96 97 0.178950 ATAGCTCGGATGCCTGAGGA 60.179 55.000 0.65 0.00 44.23 3.71
97 98 1.109920 TAGCTCGGATGCCTGAGGAC 61.110 60.000 0.65 0.00 44.23 3.85
98 99 2.430610 GCTCGGATGCCTGAGGACT 61.431 63.158 0.65 0.00 44.23 3.85
99 100 1.739049 CTCGGATGCCTGAGGACTC 59.261 63.158 0.65 0.00 41.15 3.36
100 101 1.743321 CTCGGATGCCTGAGGACTCC 61.743 65.000 0.65 6.17 41.15 3.85
101 102 2.818132 GGATGCCTGAGGACTCCG 59.182 66.667 0.65 0.00 0.00 4.63
102 103 2.060980 GGATGCCTGAGGACTCCGT 61.061 63.158 0.65 0.00 0.00 4.69
103 104 0.755698 GGATGCCTGAGGACTCCGTA 60.756 60.000 0.65 0.00 0.00 4.02
104 105 1.112113 GATGCCTGAGGACTCCGTAA 58.888 55.000 0.65 0.00 0.00 3.18
105 106 1.689273 GATGCCTGAGGACTCCGTAAT 59.311 52.381 0.65 0.00 0.00 1.89
106 107 1.112113 TGCCTGAGGACTCCGTAATC 58.888 55.000 0.65 0.00 0.00 1.75
107 108 0.389757 GCCTGAGGACTCCGTAATCC 59.610 60.000 0.65 0.00 34.98 3.01
109 110 1.683917 CCTGAGGACTCCGTAATCCTG 59.316 57.143 0.00 0.00 45.74 3.86
110 111 1.683917 CTGAGGACTCCGTAATCCTGG 59.316 57.143 3.50 0.00 45.74 4.45
111 112 1.286849 TGAGGACTCCGTAATCCTGGA 59.713 52.381 0.00 0.00 45.74 3.86
112 113 1.682323 GAGGACTCCGTAATCCTGGAC 59.318 57.143 0.00 0.00 45.74 4.02
113 114 1.288335 AGGACTCCGTAATCCTGGACT 59.712 52.381 0.00 0.00 44.00 3.85
114 115 1.682323 GGACTCCGTAATCCTGGACTC 59.318 57.143 0.00 0.00 31.75 3.36
115 116 1.682323 GACTCCGTAATCCTGGACTCC 59.318 57.143 0.00 0.00 0.00 3.85
116 117 1.041437 CTCCGTAATCCTGGACTCCC 58.959 60.000 0.00 0.00 0.00 4.30
117 118 0.635009 TCCGTAATCCTGGACTCCCT 59.365 55.000 0.00 0.00 0.00 4.20
118 119 1.041437 CCGTAATCCTGGACTCCCTC 58.959 60.000 0.00 0.00 0.00 4.30
119 120 1.688311 CCGTAATCCTGGACTCCCTCA 60.688 57.143 0.00 0.00 0.00 3.86
120 121 1.683917 CGTAATCCTGGACTCCCTCAG 59.316 57.143 0.00 0.00 0.00 3.35
121 122 1.414550 GTAATCCTGGACTCCCTCAGC 59.585 57.143 0.00 0.00 0.00 4.26
122 123 0.985490 AATCCTGGACTCCCTCAGCC 60.985 60.000 0.00 0.00 0.00 4.85
153 154 2.826725 CCCTTGTTCTACTCTTCCTCGT 59.173 50.000 0.00 0.00 0.00 4.18
154 155 3.258622 CCCTTGTTCTACTCTTCCTCGTT 59.741 47.826 0.00 0.00 0.00 3.85
173 174 1.371558 GGAGACCGCACCTTCACTT 59.628 57.895 0.00 0.00 0.00 3.16
174 175 0.606604 GGAGACCGCACCTTCACTTA 59.393 55.000 0.00 0.00 0.00 2.24
186 187 5.918576 GCACCTTCACTTAATTTGGTGTTAC 59.081 40.000 10.94 0.00 44.63 2.50
205 206 2.507944 GCCGGTGCTCATGGAGAT 59.492 61.111 1.90 0.00 33.53 2.75
224 225 2.044946 GCGGAAGGAGGCCAACAT 60.045 61.111 5.01 0.00 0.00 2.71
269 270 3.457012 TGTTGTAGGATAGGTTTAGGGGC 59.543 47.826 0.00 0.00 0.00 5.80
275 276 0.030399 ATAGGTTTAGGGGCGGGTCT 60.030 55.000 0.00 0.00 0.00 3.85
319 320 9.944663 TTCAAAATATAGTTAAATCCGTCATGC 57.055 29.630 0.00 0.00 0.00 4.06
346 347 2.159934 CGAAATCCGACCGTGTTTACAC 60.160 50.000 2.92 2.92 41.12 2.90
417 418 1.814169 GGATTTCGACCTCCCGCAC 60.814 63.158 1.64 0.00 0.00 5.34
470 471 6.258160 CAGACGAATGCGGAAAATTTCTTAT 58.742 36.000 5.65 0.00 43.17 1.73
477 478 4.282195 TGCGGAAAATTTCTTATGGGTTGT 59.718 37.500 5.65 0.00 0.00 3.32
497 498 3.585289 TGTTGTTGGAGATGCCCTAACTA 59.415 43.478 0.00 0.00 34.97 2.24
660 663 4.184629 ACCACGTTTGCATCTAGAGAATC 58.815 43.478 0.00 0.00 0.00 2.52
770 2467 0.030638 CTCAGGCCACAAAAACCACG 59.969 55.000 5.01 0.00 0.00 4.94
785 2482 1.007336 CCACGAGACACGCAACTACC 61.007 60.000 0.00 0.00 46.94 3.18
807 2508 1.354368 TCACCCAAAGTCCAAGGGATC 59.646 52.381 3.32 0.00 45.80 3.36
815 2516 5.302823 CCAAAGTCCAAGGGATCCATATTTC 59.697 44.000 15.23 0.00 32.73 2.17
836 2556 1.300620 CACCGACTTCTCCAACGCA 60.301 57.895 0.00 0.00 0.00 5.24
845 2565 1.750193 TCTCCAACGCAAATCCATCC 58.250 50.000 0.00 0.00 0.00 3.51
859 2579 4.524318 ATCCTAACGGGCACGGCG 62.524 66.667 15.46 4.80 46.48 6.46
979 2703 2.597510 AAGCCCTCCGCCAAACAC 60.598 61.111 0.00 0.00 38.78 3.32
983 2707 2.598787 CCCTCCGCCAAACACCCTA 61.599 63.158 0.00 0.00 0.00 3.53
1005 2729 2.123597 TCCATAGACCCGGTCCCG 60.124 66.667 14.32 0.00 39.44 5.14
1028 2752 4.394712 CCGCTCCCACTGACACCC 62.395 72.222 0.00 0.00 0.00 4.61
1029 2753 4.742201 CGCTCCCACTGACACCCG 62.742 72.222 0.00 0.00 0.00 5.28
1059 2783 3.807538 GCTACGACGCGTCTCCCA 61.808 66.667 33.94 16.38 41.54 4.37
1081 2805 0.685660 GAAGACCGGGTCCACTCTTT 59.314 55.000 23.21 10.03 32.18 2.52
1291 3015 5.277490 GCTTCGAATTCATCCATCGATCAAA 60.277 40.000 6.22 0.00 44.14 2.69
1309 3033 2.695147 CAAAGGTGCCTTTCTTGGTTCT 59.305 45.455 12.85 0.00 43.56 3.01
1310 3034 2.755952 AGGTGCCTTTCTTGGTTCTT 57.244 45.000 0.00 0.00 0.00 2.52
1374 3098 2.114056 GCAAGTATCGTATCGTGCGAA 58.886 47.619 0.00 0.00 41.84 4.70
1391 3115 7.018826 TCGTGCGAAATTTTAGATTAGGTTTG 58.981 34.615 0.00 0.00 0.00 2.93
1427 3152 3.754188 AATCTGAATGAACTTGCGAGC 57.246 42.857 0.00 0.00 0.00 5.03
1430 3155 0.950555 TGAATGAACTTGCGAGCGCT 60.951 50.000 11.27 11.27 42.51 5.92
1466 3191 5.292589 GCAATGTTTCATTCCATGATCCAAC 59.707 40.000 0.00 0.00 39.39 3.77
1467 3192 5.603170 ATGTTTCATTCCATGATCCAACC 57.397 39.130 0.00 0.00 39.39 3.77
1468 3193 3.443329 TGTTTCATTCCATGATCCAACCG 59.557 43.478 0.00 0.00 39.39 4.44
1513 3244 6.671614 TTTCACTTCGAAAGAACTAAAGCA 57.328 33.333 11.08 0.00 46.92 3.91
1534 3265 5.045872 GCAAATCTTTGTTGCTCAAGAGTT 58.954 37.500 4.71 0.00 46.31 3.01
1535 3266 6.208644 GCAAATCTTTGTTGCTCAAGAGTTA 58.791 36.000 4.71 0.00 46.31 2.24
1579 3310 5.163195 GCTCCATACCCTAATCCTCTTTCAA 60.163 44.000 0.00 0.00 0.00 2.69
1583 3314 6.410853 CCATACCCTAATCCTCTTTCAATGGT 60.411 42.308 0.00 0.00 0.00 3.55
1607 3338 7.284034 GGTGAATCCAACTGATGAATTGATAGT 59.716 37.037 0.00 0.00 32.68 2.12
1679 3428 5.565592 TTGAAATGGTGTGTGATGATAGC 57.434 39.130 0.00 0.00 0.00 2.97
1681 3430 4.637091 TGAAATGGTGTGTGATGATAGCAG 59.363 41.667 0.00 0.00 0.00 4.24
1743 3493 4.107622 CCATCCTTCGATGTTTGCAATTC 58.892 43.478 0.00 0.00 43.87 2.17
1790 3541 1.267806 CGGCACTGCAGACAAAGAAAT 59.732 47.619 23.35 0.00 0.00 2.17
1794 3546 4.022849 GGCACTGCAGACAAAGAAATTAGT 60.023 41.667 23.35 0.00 0.00 2.24
1797 3549 6.798959 GCACTGCAGACAAAGAAATTAGTTAG 59.201 38.462 23.35 0.00 0.00 2.34
1798 3550 7.520614 GCACTGCAGACAAAGAAATTAGTTAGT 60.521 37.037 23.35 0.00 0.00 2.24
1799 3551 8.988934 CACTGCAGACAAAGAAATTAGTTAGTA 58.011 33.333 23.35 0.00 0.00 1.82
1800 3552 8.989980 ACTGCAGACAAAGAAATTAGTTAGTAC 58.010 33.333 23.35 0.00 0.00 2.73
1801 3553 9.209175 CTGCAGACAAAGAAATTAGTTAGTACT 57.791 33.333 8.42 0.00 38.44 2.73
1802 3554 9.555727 TGCAGACAAAGAAATTAGTTAGTACTT 57.444 29.630 0.00 0.00 35.78 2.24
1866 3618 2.565391 TGTTTCCAGAATGTCGAGCCTA 59.435 45.455 0.00 0.00 0.00 3.93
1923 3675 8.950208 AGTTGAGTATTAATAGACTTGGAAGC 57.050 34.615 0.00 0.00 0.00 3.86
2019 3771 6.435277 ACACCAAATGCTTCATCTCATACTTT 59.565 34.615 0.00 0.00 0.00 2.66
2131 3884 1.070134 TCTGCTTTCAGTTACACGCCT 59.930 47.619 0.00 0.00 41.10 5.52
2175 3928 1.458827 GCTCTTTCACAGCACTTCTCG 59.541 52.381 0.00 0.00 36.82 4.04
2398 4151 6.484288 AGGAAGTGACATGTATCATTTTGGA 58.516 36.000 0.00 0.00 29.49 3.53
2418 4171 4.007940 CGTTCGGTGTTGCGGTGG 62.008 66.667 0.00 0.00 0.00 4.61
2428 4181 3.880490 GGTGTTGCGGTGGATTATGATAA 59.120 43.478 0.00 0.00 0.00 1.75
2429 4182 4.518970 GGTGTTGCGGTGGATTATGATAAT 59.481 41.667 0.00 0.00 0.00 1.28
2493 4246 8.219178 TGTTTAACCAACTTATCCCTAGTTTCA 58.781 33.333 0.00 0.00 36.21 2.69
2500 4253 6.426646 ACTTATCCCTAGTTTCATGGCTAG 57.573 41.667 10.77 10.77 35.64 3.42
2510 4263 2.787473 TCATGGCTAGTTTCCCACAG 57.213 50.000 0.00 0.00 33.17 3.66
2515 4268 1.443802 GCTAGTTTCCCACAGCAGAC 58.556 55.000 0.00 0.00 32.67 3.51
2575 4333 3.828875 AACTAAGCCTCTGTCTATGGC 57.171 47.619 0.00 0.00 46.42 4.40
2595 4353 2.538333 GCAGCGCAACATAGTTCATCAG 60.538 50.000 11.47 0.00 0.00 2.90
2597 4355 1.268234 GCGCAACATAGTTCATCAGCC 60.268 52.381 0.30 0.00 0.00 4.85
2599 4357 2.009774 GCAACATAGTTCATCAGCCGT 58.990 47.619 0.00 0.00 0.00 5.68
2653 4411 5.051891 ACTGTTTGAACTCATATGCAAGC 57.948 39.130 0.00 0.00 0.00 4.01
2656 4414 6.088016 TGTTTGAACTCATATGCAAGCTTT 57.912 33.333 0.00 0.00 0.00 3.51
2659 4417 4.081406 TGAACTCATATGCAAGCTTTGGT 58.919 39.130 0.00 0.00 0.00 3.67
2952 4710 6.351117 GGTGTACCTAAACTAGATGAAGCTGT 60.351 42.308 0.00 0.00 0.00 4.40
2975 4733 1.927895 ACATGCGCAGTAGTTAGCTC 58.072 50.000 18.32 0.00 0.00 4.09
3314 5077 6.611642 AGAGTATGCCCATTTCTGTAGACTTA 59.388 38.462 0.00 0.00 0.00 2.24
3411 5195 7.633621 ACATATTTTGTAGTGATGAAGCGATG 58.366 34.615 0.00 0.00 36.57 3.84
3460 5244 0.662374 CAGCTGGCGCAAAAGAAGTG 60.662 55.000 10.83 0.00 39.10 3.16
3631 5415 5.597813 AGTGTAAACGAAGAGCTTGATTG 57.402 39.130 0.00 0.00 0.00 2.67
3633 5417 2.997485 AAACGAAGAGCTTGATTGCC 57.003 45.000 0.00 0.00 0.00 4.52
3848 5643 4.094887 CGCTGAGTGCCATATTAAACTGTT 59.905 41.667 0.00 0.00 38.78 3.16
3874 5669 6.479095 TTTCTTGAGGCTTTTTGTTTGTTG 57.521 33.333 0.00 0.00 0.00 3.33
3938 5738 1.070914 GTAGTTCCTATGCTGGAGGCC 59.929 57.143 0.00 0.00 40.92 5.19
3941 5741 1.971505 TTCCTATGCTGGAGGCCGTG 61.972 60.000 0.00 0.00 40.92 4.94
4031 5831 4.048600 ACATCCTAGTCTCTCTCCAGGTA 58.951 47.826 0.00 0.00 0.00 3.08
4032 5832 4.479056 ACATCCTAGTCTCTCTCCAGGTAA 59.521 45.833 0.00 0.00 0.00 2.85
4033 5833 5.135362 ACATCCTAGTCTCTCTCCAGGTAAT 59.865 44.000 0.00 0.00 0.00 1.89
4034 5834 6.333168 ACATCCTAGTCTCTCTCCAGGTAATA 59.667 42.308 0.00 0.00 0.00 0.98
4035 5835 6.843473 TCCTAGTCTCTCTCCAGGTAATAA 57.157 41.667 0.00 0.00 0.00 1.40
4036 5836 7.409408 TCCTAGTCTCTCTCCAGGTAATAAT 57.591 40.000 0.00 0.00 0.00 1.28
4093 5896 3.214328 CAAGGCTTGTTGTCCTAACACT 58.786 45.455 19.07 0.00 34.35 3.55
4103 5906 5.650266 TGTTGTCCTAACACTGTTTTCATGT 59.350 36.000 0.00 0.00 34.35 3.21
4151 5954 1.878088 GTAGTGGACTCGTCTGTGTCA 59.122 52.381 0.00 0.00 39.73 3.58
4328 6131 1.073897 AGGCTCCAAGACTGCAACC 59.926 57.895 0.00 0.00 27.71 3.77
4378 6198 2.417379 CCGTCATACTGGAACTCCACAG 60.417 54.545 0.00 0.00 42.01 3.66
4440 6260 6.912203 TGGTTGTTGTATACCGTATCAATG 57.088 37.500 0.00 0.00 37.23 2.82
4486 6306 6.085555 TCAGGAACGATTGATATGTACTCC 57.914 41.667 0.00 0.00 0.00 3.85
4488 6308 5.011125 CAGGAACGATTGATATGTACTCCCT 59.989 44.000 0.00 0.00 0.00 4.20
4489 6309 5.244178 AGGAACGATTGATATGTACTCCCTC 59.756 44.000 0.00 0.00 0.00 4.30
4490 6310 5.470047 AACGATTGATATGTACTCCCTCC 57.530 43.478 0.00 0.00 0.00 4.30
4491 6311 3.506455 ACGATTGATATGTACTCCCTCCG 59.494 47.826 0.00 0.00 0.00 4.63
4493 6313 4.022242 CGATTGATATGTACTCCCTCCGTT 60.022 45.833 0.00 0.00 0.00 4.44
4494 6314 4.931661 TTGATATGTACTCCCTCCGTTC 57.068 45.455 0.00 0.00 0.00 3.95
4495 6315 3.228453 TGATATGTACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
4496 6316 2.832643 TATGTACTCCCTCCGTTCCA 57.167 50.000 0.00 0.00 0.00 3.53
4497 6317 1.946984 ATGTACTCCCTCCGTTCCAA 58.053 50.000 0.00 0.00 0.00 3.53
4498 6318 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
4499 6319 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
4500 6320 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
4501 6321 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
4502 6322 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4503 6323 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4504 6324 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4505 6325 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4506 6326 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4507 6327 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4508 6328 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
4509 6329 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4510 6330 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4511 6331 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
4512 6332 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4513 6333 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
4514 6334 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
4515 6335 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
4516 6336 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
4542 6362 9.716531 ATACTAACTTTAGTACAAAGTTGGGTC 57.283 33.333 28.62 0.00 46.38 4.46
4543 6363 7.567458 ACTAACTTTAGTACAAAGTTGGGTCA 58.433 34.615 28.62 17.50 46.38 4.02
4544 6364 8.215736 ACTAACTTTAGTACAAAGTTGGGTCAT 58.784 33.333 28.62 17.19 46.38 3.06
4545 6365 7.506328 AACTTTAGTACAAAGTTGGGTCATC 57.494 36.000 23.48 0.00 45.58 2.92
4546 6366 6.838382 ACTTTAGTACAAAGTTGGGTCATCT 58.162 36.000 14.04 0.00 37.18 2.90
4547 6367 7.970102 ACTTTAGTACAAAGTTGGGTCATCTA 58.030 34.615 14.04 0.00 37.18 1.98
4548 6368 8.603304 ACTTTAGTACAAAGTTGGGTCATCTAT 58.397 33.333 14.04 0.00 37.18 1.98
4549 6369 9.449719 CTTTAGTACAAAGTTGGGTCATCTATT 57.550 33.333 0.00 0.00 0.00 1.73
4550 6370 9.802039 TTTAGTACAAAGTTGGGTCATCTATTT 57.198 29.630 0.00 0.00 0.00 1.40
4551 6371 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
4552 6372 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
4553 6373 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
4554 6374 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
4555 6375 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
4556 6376 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
4557 6377 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
4558 6378 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
4559 6379 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
4560 6380 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
4561 6381 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
4562 6382 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4563 6383 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4564 6384 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4565 6385 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4566 6386 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4567 6387 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
4573 6393 2.026542 GGAACGGAGGGAGTACCAATTT 60.027 50.000 0.00 0.00 43.89 1.82
4621 6442 2.829741 ATAATCAGAGCCCTCTTCGC 57.170 50.000 0.00 0.00 37.98 4.70
4688 6513 5.418310 AGAACAATTAACCGAACTGTGTG 57.582 39.130 0.00 0.00 0.00 3.82
4699 6524 4.083324 ACCGAACTGTGTGATAAATTGCTG 60.083 41.667 0.00 0.00 0.00 4.41
4813 6639 9.436957 AGATTTTACATGTATCGAAAAGAGTGT 57.563 29.630 6.36 0.00 0.00 3.55
4960 6786 2.771372 GGCCTCTCTTCTCTCTTCCAAT 59.229 50.000 0.00 0.00 0.00 3.16
5014 6840 1.206072 GCACTCTGAAGCAGCAACG 59.794 57.895 0.00 0.00 0.00 4.10
5027 6853 2.280524 CAACGTGAACCTGCGGGA 60.281 61.111 21.41 0.00 36.25 5.14
5028 6854 1.890041 CAACGTGAACCTGCGGGAA 60.890 57.895 21.41 0.00 36.25 3.97
5029 6855 1.153127 AACGTGAACCTGCGGGAAA 60.153 52.632 21.41 0.00 36.25 3.13
5143 6971 4.104383 ACGGTATTAGAATCCCTCCGTA 57.896 45.455 4.56 0.00 45.97 4.02
5218 7063 3.228188 AGGTTCACTGATTTTGCTCCA 57.772 42.857 0.00 0.00 0.00 3.86
5223 7079 7.118723 AGGTTCACTGATTTTGCTCCATATTA 58.881 34.615 0.00 0.00 0.00 0.98
5418 7290 6.782494 ACCAGGGTAAAAGAAATTTGTCAGAT 59.218 34.615 0.00 0.00 32.27 2.90
5447 7319 7.713507 ACGAAGAAATGACCAAATATCGGATAA 59.286 33.333 1.16 0.00 32.50 1.75
5723 7595 2.353208 CCTCGGGTGAAAGAGAGTTCAG 60.353 54.545 0.00 0.00 38.17 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.687200 CCCCGTGTCCAGATGGGA 60.687 66.667 2.40 0.00 44.88 4.37
9 10 3.797353 CCCCCGTGTCCAGATGGG 61.797 72.222 0.00 0.00 41.56 4.00
10 11 1.847798 TTTCCCCCGTGTCCAGATGG 61.848 60.000 0.00 0.00 0.00 3.51
11 12 0.392998 CTTTCCCCCGTGTCCAGATG 60.393 60.000 0.00 0.00 0.00 2.90
12 13 0.840722 ACTTTCCCCCGTGTCCAGAT 60.841 55.000 0.00 0.00 0.00 2.90
13 14 1.460689 ACTTTCCCCCGTGTCCAGA 60.461 57.895 0.00 0.00 0.00 3.86
14 15 1.003718 GACTTTCCCCCGTGTCCAG 60.004 63.158 0.00 0.00 0.00 3.86
15 16 1.057851 AAGACTTTCCCCCGTGTCCA 61.058 55.000 0.00 0.00 0.00 4.02
16 17 0.321387 GAAGACTTTCCCCCGTGTCC 60.321 60.000 0.00 0.00 0.00 4.02
17 18 0.321387 GGAAGACTTTCCCCCGTGTC 60.321 60.000 0.00 0.00 46.03 3.67
18 19 1.759236 GGAAGACTTTCCCCCGTGT 59.241 57.895 0.00 0.00 46.03 4.49
19 20 4.716003 GGAAGACTTTCCCCCGTG 57.284 61.111 0.00 0.00 46.03 4.94
26 27 7.070183 GTGAAGATACAAAACGGAAGACTTTC 58.930 38.462 0.00 0.00 0.00 2.62
27 28 6.292703 CGTGAAGATACAAAACGGAAGACTTT 60.293 38.462 0.00 0.00 0.00 2.66
28 29 5.176958 CGTGAAGATACAAAACGGAAGACTT 59.823 40.000 0.00 0.00 0.00 3.01
29 30 4.684703 CGTGAAGATACAAAACGGAAGACT 59.315 41.667 0.00 0.00 0.00 3.24
30 31 4.942765 CGTGAAGATACAAAACGGAAGAC 58.057 43.478 0.00 0.00 0.00 3.01
36 37 1.129811 GGGCCGTGAAGATACAAAACG 59.870 52.381 0.00 0.00 0.00 3.60
37 38 2.095415 GTGGGCCGTGAAGATACAAAAC 60.095 50.000 0.00 0.00 0.00 2.43
38 39 2.156098 GTGGGCCGTGAAGATACAAAA 58.844 47.619 0.00 0.00 0.00 2.44
39 40 1.612199 GGTGGGCCGTGAAGATACAAA 60.612 52.381 0.00 0.00 0.00 2.83
40 41 0.035820 GGTGGGCCGTGAAGATACAA 60.036 55.000 0.00 0.00 0.00 2.41
41 42 1.195442 TGGTGGGCCGTGAAGATACA 61.195 55.000 0.00 0.00 37.67 2.29
42 43 0.462047 CTGGTGGGCCGTGAAGATAC 60.462 60.000 0.00 0.00 37.67 2.24
43 44 0.907704 ACTGGTGGGCCGTGAAGATA 60.908 55.000 0.00 0.00 37.67 1.98
44 45 2.185310 GACTGGTGGGCCGTGAAGAT 62.185 60.000 0.00 0.00 37.67 2.40
45 46 2.847234 ACTGGTGGGCCGTGAAGA 60.847 61.111 0.00 0.00 37.67 2.87
46 47 2.358737 GACTGGTGGGCCGTGAAG 60.359 66.667 0.00 0.00 37.67 3.02
47 48 3.948719 GGACTGGTGGGCCGTGAA 61.949 66.667 0.00 0.00 37.67 3.18
58 59 1.239296 TGTGACGTAGACCGGACTGG 61.239 60.000 17.05 10.57 46.41 4.00
59 60 0.809385 ATGTGACGTAGACCGGACTG 59.191 55.000 17.05 3.14 42.24 3.51
60 61 2.286872 CTATGTGACGTAGACCGGACT 58.713 52.381 9.46 10.97 42.24 3.85
61 62 1.268437 GCTATGTGACGTAGACCGGAC 60.268 57.143 15.64 0.10 42.24 4.79
62 63 1.019673 GCTATGTGACGTAGACCGGA 58.980 55.000 15.64 0.00 42.24 5.14
63 64 1.002684 GAGCTATGTGACGTAGACCGG 60.003 57.143 15.64 0.00 42.24 5.28
64 65 1.332993 CGAGCTATGTGACGTAGACCG 60.333 57.143 15.64 12.53 44.03 4.79
65 66 1.002684 CCGAGCTATGTGACGTAGACC 60.003 57.143 15.64 5.17 0.00 3.85
66 67 1.938577 TCCGAGCTATGTGACGTAGAC 59.061 52.381 15.64 7.02 0.00 2.59
67 68 2.320745 TCCGAGCTATGTGACGTAGA 57.679 50.000 15.64 0.00 0.00 2.59
68 69 2.918549 GCATCCGAGCTATGTGACGTAG 60.919 54.545 7.46 7.46 0.00 3.51
69 70 1.001706 GCATCCGAGCTATGTGACGTA 60.002 52.381 0.00 0.00 0.00 3.57
70 71 0.249073 GCATCCGAGCTATGTGACGT 60.249 55.000 0.00 0.00 0.00 4.34
71 72 0.941463 GGCATCCGAGCTATGTGACG 60.941 60.000 0.00 0.00 34.17 4.35
72 73 0.390860 AGGCATCCGAGCTATGTGAC 59.609 55.000 0.00 0.00 34.17 3.67
73 74 0.390492 CAGGCATCCGAGCTATGTGA 59.610 55.000 0.00 0.00 34.17 3.58
74 75 0.390492 TCAGGCATCCGAGCTATGTG 59.610 55.000 0.00 0.00 34.17 3.21
75 76 0.678395 CTCAGGCATCCGAGCTATGT 59.322 55.000 0.00 0.00 34.17 2.29
76 77 0.037512 CCTCAGGCATCCGAGCTATG 60.038 60.000 0.00 0.00 34.17 2.23
77 78 0.178950 TCCTCAGGCATCCGAGCTAT 60.179 55.000 0.00 0.00 34.17 2.97
78 79 1.109920 GTCCTCAGGCATCCGAGCTA 61.110 60.000 0.00 0.00 34.17 3.32
79 80 2.042537 TCCTCAGGCATCCGAGCT 60.043 61.111 0.00 0.00 34.17 4.09
80 81 2.107953 GTCCTCAGGCATCCGAGC 59.892 66.667 0.00 0.00 0.00 5.03
81 82 1.739049 GAGTCCTCAGGCATCCGAG 59.261 63.158 0.00 0.00 0.00 4.63
82 83 1.758514 GGAGTCCTCAGGCATCCGA 60.759 63.158 0.41 0.00 0.00 4.55
83 84 2.818132 GGAGTCCTCAGGCATCCG 59.182 66.667 0.41 0.00 0.00 4.18
84 85 0.755698 TACGGAGTCCTCAGGCATCC 60.756 60.000 7.77 4.27 43.93 3.51
85 86 1.112113 TTACGGAGTCCTCAGGCATC 58.888 55.000 7.77 0.00 43.93 3.91
86 87 1.689273 GATTACGGAGTCCTCAGGCAT 59.311 52.381 7.77 0.00 43.93 4.40
87 88 1.112113 GATTACGGAGTCCTCAGGCA 58.888 55.000 7.77 0.00 43.93 4.75
88 89 0.389757 GGATTACGGAGTCCTCAGGC 59.610 60.000 7.77 0.00 43.93 4.85
89 90 1.683917 CAGGATTACGGAGTCCTCAGG 59.316 57.143 9.13 0.00 42.88 3.86
90 91 1.683917 CCAGGATTACGGAGTCCTCAG 59.316 57.143 9.13 0.00 42.88 3.35
91 92 1.286849 TCCAGGATTACGGAGTCCTCA 59.713 52.381 9.13 0.00 42.88 3.86
92 93 1.682323 GTCCAGGATTACGGAGTCCTC 59.318 57.143 9.13 0.00 42.88 3.71
93 94 1.288335 AGTCCAGGATTACGGAGTCCT 59.712 52.381 5.73 5.73 45.60 3.85
94 95 1.682323 GAGTCCAGGATTACGGAGTCC 59.318 57.143 0.00 0.00 43.32 3.85
95 96 1.682323 GGAGTCCAGGATTACGGAGTC 59.318 57.143 3.60 4.94 46.80 3.36
96 97 4.042832 AGGGAGTCCAGGATTACGGAGT 62.043 54.545 12.30 0.00 39.43 3.85
97 98 1.041437 GGGAGTCCAGGATTACGGAG 58.959 60.000 12.30 0.00 29.98 4.63
98 99 0.635009 AGGGAGTCCAGGATTACGGA 59.365 55.000 12.30 0.00 34.83 4.69
99 100 1.041437 GAGGGAGTCCAGGATTACGG 58.959 60.000 12.30 0.00 34.83 4.02
100 101 1.683917 CTGAGGGAGTCCAGGATTACG 59.316 57.143 12.30 0.00 34.83 3.18
101 102 1.414550 GCTGAGGGAGTCCAGGATTAC 59.585 57.143 12.30 0.00 34.83 1.89
102 103 1.692762 GGCTGAGGGAGTCCAGGATTA 60.693 57.143 12.30 0.00 34.83 1.75
103 104 0.985490 GGCTGAGGGAGTCCAGGATT 60.985 60.000 12.30 0.00 34.83 3.01
104 105 1.383803 GGCTGAGGGAGTCCAGGAT 60.384 63.158 12.30 0.00 34.83 3.24
105 106 2.039624 GGCTGAGGGAGTCCAGGA 59.960 66.667 12.30 0.00 34.83 3.86
106 107 3.465403 CGGCTGAGGGAGTCCAGG 61.465 72.222 12.30 0.00 34.83 4.45
107 108 3.465403 CCGGCTGAGGGAGTCCAG 61.465 72.222 12.30 0.53 34.83 3.86
122 123 3.952628 GAACAAGGGAGACGGGCCG 62.953 68.421 27.06 27.06 0.00 6.13
134 135 4.022242 TCCAACGAGGAAGAGTAGAACAAG 60.022 45.833 0.00 0.00 45.65 3.16
135 136 3.893200 TCCAACGAGGAAGAGTAGAACAA 59.107 43.478 0.00 0.00 45.65 2.83
153 154 1.070786 GTGAAGGTGCGGTCTCCAA 59.929 57.895 0.00 0.00 0.00 3.53
154 155 1.407656 AAGTGAAGGTGCGGTCTCCA 61.408 55.000 0.00 0.00 0.00 3.86
173 174 1.271271 ACCGGCGGTAACACCAAATTA 60.271 47.619 33.31 0.00 39.40 1.40
174 175 0.537828 ACCGGCGGTAACACCAAATT 60.538 50.000 33.31 0.00 39.40 1.82
242 243 1.861982 ACCTATCCTACAACAGCGGT 58.138 50.000 0.00 0.00 0.00 5.68
247 248 3.457012 GCCCCTAAACCTATCCTACAACA 59.543 47.826 0.00 0.00 0.00 3.33
249 250 2.701951 CGCCCCTAAACCTATCCTACAA 59.298 50.000 0.00 0.00 0.00 2.41
315 316 2.030457 GGTCGGATTTCGTACAAGCATG 59.970 50.000 0.00 0.00 40.32 4.06
319 320 1.652124 CACGGTCGGATTTCGTACAAG 59.348 52.381 0.00 0.00 40.32 3.16
346 347 8.755696 TTTTTCAATAAACTGGATGGAATTCG 57.244 30.769 0.00 0.00 0.00 3.34
417 418 1.597742 GATCAATCCGTGGACATGGG 58.402 55.000 10.48 0.00 38.05 4.00
459 460 7.569240 TCCAACAACAACCCATAAGAAATTTT 58.431 30.769 0.00 0.00 0.00 1.82
470 471 1.327303 GCATCTCCAACAACAACCCA 58.673 50.000 0.00 0.00 0.00 4.51
477 478 4.919774 TTAGTTAGGGCATCTCCAACAA 57.080 40.909 0.00 0.00 36.21 2.83
497 498 8.866970 AATGGCATCTCATTTAAATTTGGTTT 57.133 26.923 0.00 0.00 34.01 3.27
660 663 2.287188 GCGGATGTATGCTGTTGAATGG 60.287 50.000 0.00 0.00 0.00 3.16
694 697 1.081376 CTGATATCGGGTCGGACGC 60.081 63.158 14.58 14.58 0.00 5.19
698 701 1.006102 GGTGCTGATATCGGGTCGG 60.006 63.158 13.48 0.00 0.00 4.79
699 702 1.006102 GGGTGCTGATATCGGGTCG 60.006 63.158 13.48 0.00 0.00 4.79
770 2467 1.993370 GTGATGGTAGTTGCGTGTCTC 59.007 52.381 0.00 0.00 0.00 3.36
785 2482 1.075374 TCCCTTGGACTTTGGGTGATG 59.925 52.381 0.00 0.00 41.58 3.07
807 2508 1.597663 GAAGTCGGTGCGGAAATATGG 59.402 52.381 0.00 0.00 0.00 2.74
815 2516 2.027625 GTTGGAGAAGTCGGTGCGG 61.028 63.158 0.00 0.00 0.00 5.69
836 2556 1.745827 CGTGCCCGTTAGGATGGATTT 60.746 52.381 0.00 0.00 41.02 2.17
979 2703 1.548128 CGGGTCTATGGAGAGGTAGGG 60.548 61.905 0.00 0.00 30.20 3.53
983 2707 0.106116 GACCGGGTCTATGGAGAGGT 60.106 60.000 19.92 0.62 30.20 3.85
1005 2729 1.681327 TCAGTGGGAGCGGGTCTAC 60.681 63.158 7.19 7.03 0.00 2.59
1044 2768 3.434319 GGTGGGAGACGCGTCGTA 61.434 66.667 31.56 17.10 41.37 3.43
1081 2805 2.975799 GCCGCGTCCACCTGAAAA 60.976 61.111 4.92 0.00 0.00 2.29
1291 3015 2.310538 CAAGAACCAAGAAAGGCACCT 58.689 47.619 0.00 0.00 0.00 4.00
1309 3033 1.133294 GGGGGAAGAACCAAGAACCAA 60.133 52.381 0.00 0.00 41.20 3.67
1310 3034 0.481128 GGGGGAAGAACCAAGAACCA 59.519 55.000 0.00 0.00 41.20 3.67
1348 3072 4.287720 CACGATACGATACTTGCTTGCTA 58.712 43.478 0.00 0.00 0.00 3.49
1427 3152 2.198406 CATTGCATCCAAATCCAAGCG 58.802 47.619 0.00 0.00 34.05 4.68
1430 3155 5.224821 TGAAACATTGCATCCAAATCCAA 57.775 34.783 0.00 0.00 34.05 3.53
1466 3191 1.473677 TGAATTGAAGCATGAAGGCGG 59.526 47.619 0.00 0.00 39.27 6.13
1467 3192 2.925578 TGAATTGAAGCATGAAGGCG 57.074 45.000 0.00 0.00 39.27 5.52
1468 3193 6.490566 AATTTTGAATTGAAGCATGAAGGC 57.509 33.333 0.00 0.00 0.00 4.35
1513 3244 6.920210 GCTTAACTCTTGAGCAACAAAGATTT 59.080 34.615 0.00 0.00 41.46 2.17
1527 3258 2.802816 ACAGAGCAACGCTTAACTCTTG 59.197 45.455 0.00 0.00 39.88 3.02
1583 3314 9.330063 GTACTATCAATTCATCAGTTGGATTCA 57.670 33.333 0.00 0.00 30.56 2.57
1591 3322 9.703892 GATTGCTAGTACTATCAATTCATCAGT 57.296 33.333 25.19 8.46 33.57 3.41
1634 3365 1.080298 TATCAATTTCGCGCGGTTGT 58.920 45.000 31.69 21.01 0.00 3.32
1637 3368 1.865865 AGATATCAATTTCGCGCGGT 58.134 45.000 31.69 13.88 0.00 5.68
1679 3428 4.654091 TCCCTCAAAAACAAAAGAGCTG 57.346 40.909 0.00 0.00 0.00 4.24
1681 3430 4.746611 CACATCCCTCAAAAACAAAAGAGC 59.253 41.667 0.00 0.00 0.00 4.09
1743 3493 4.084849 GCATCTGAAACATCGAAGGATACG 60.085 45.833 0.00 0.00 46.39 3.06
1790 3541 9.489084 CAATGCTGGCATATAAGTACTAACTAA 57.511 33.333 8.55 0.00 35.31 2.24
1797 3549 8.783093 TGAATAACAATGCTGGCATATAAGTAC 58.217 33.333 8.55 0.00 35.31 2.73
1798 3550 8.783093 GTGAATAACAATGCTGGCATATAAGTA 58.217 33.333 8.55 0.00 35.31 2.24
1799 3551 7.285172 TGTGAATAACAATGCTGGCATATAAGT 59.715 33.333 8.55 3.37 35.24 2.24
1800 3552 7.592533 GTGTGAATAACAATGCTGGCATATAAG 59.407 37.037 8.55 2.81 41.57 1.73
1801 3553 7.285172 AGTGTGAATAACAATGCTGGCATATAA 59.715 33.333 8.55 0.00 41.57 0.98
1802 3554 6.772233 AGTGTGAATAACAATGCTGGCATATA 59.228 34.615 8.55 3.83 41.57 0.86
1803 3555 5.595542 AGTGTGAATAACAATGCTGGCATAT 59.404 36.000 8.55 1.80 41.57 1.78
1804 3556 4.949238 AGTGTGAATAACAATGCTGGCATA 59.051 37.500 8.55 0.00 41.57 3.14
1923 3675 0.386476 TGCAAGCACTTTGGCAGAAG 59.614 50.000 7.56 7.56 37.26 2.85
2111 3864 1.070134 AGGCGTGTAACTGAAAGCAGA 59.930 47.619 0.00 0.00 45.17 4.26
2131 3884 1.028905 GGTTGTTGCCACTGTTGCTA 58.971 50.000 5.42 0.00 0.00 3.49
2175 3928 1.734137 CCTTGCAGATGCCATGAGC 59.266 57.895 1.72 0.00 41.18 4.26
2398 4151 3.722295 CCGCAACACCGAACGCAT 61.722 61.111 0.00 0.00 0.00 4.73
2428 4181 8.706322 ACAAAAACTAGTTGGATAAGTTGGAT 57.294 30.769 9.34 0.00 33.85 3.41
2429 4182 7.996644 AGACAAAAACTAGTTGGATAAGTTGGA 59.003 33.333 9.34 0.00 33.85 3.53
2493 4246 0.698238 TGCTGTGGGAAACTAGCCAT 59.302 50.000 0.00 0.00 34.15 4.40
2500 4253 2.543777 TGTAGTCTGCTGTGGGAAAC 57.456 50.000 0.00 0.00 0.00 2.78
2510 4263 3.674423 CTGCGCTTATTTTGTAGTCTGC 58.326 45.455 9.73 0.00 0.00 4.26
2536 4294 3.119849 AGTTTGCGGTTGATGAACTATGC 60.120 43.478 0.00 0.00 32.15 3.14
2575 4333 2.538333 GCTGATGAACTATGTTGCGCTG 60.538 50.000 9.73 0.00 0.00 5.18
2595 4353 0.518195 TTTGCGGCTTAGTTTACGGC 59.482 50.000 0.00 0.00 0.00 5.68
2597 4355 2.477375 TGACTTTGCGGCTTAGTTTACG 59.523 45.455 0.00 0.00 0.00 3.18
2599 4357 5.935789 AGTTATGACTTTGCGGCTTAGTTTA 59.064 36.000 0.00 0.00 29.87 2.01
2653 4411 9.834628 TCTTATTTATTACGCTTTCAACCAAAG 57.165 29.630 0.00 0.00 44.10 2.77
2656 4414 9.997482 GATTCTTATTTATTACGCTTTCAACCA 57.003 29.630 0.00 0.00 0.00 3.67
2952 4710 2.927477 GCTAACTACTGCGCATGTTACA 59.073 45.455 12.24 2.25 0.00 2.41
2962 4720 7.262048 AGATAGTTCAAAGAGCTAACTACTGC 58.738 38.462 7.95 2.76 38.24 4.40
2975 4733 6.846350 CCAGCAGGTTTTAGATAGTTCAAAG 58.154 40.000 0.00 0.00 0.00 2.77
3314 5077 5.008331 TGCTCTGAGAAGAATTTGAAGCAT 58.992 37.500 9.28 0.00 0.00 3.79
3325 5107 4.525874 TGATTTGAGACTGCTCTGAGAAGA 59.474 41.667 19.61 0.00 41.84 2.87
3384 5166 7.041721 TCGCTTCATCACTACAAAATATGTCT 58.958 34.615 0.00 0.00 42.70 3.41
3411 5195 2.417787 GCCTCAAATCCCTGCAAATGAC 60.418 50.000 0.00 0.00 0.00 3.06
3448 5232 0.248866 AAACCGCCACTTCTTTTGCG 60.249 50.000 0.00 0.00 46.14 4.85
3631 5415 2.003301 GGACTTCAGAACAGATTCGGC 58.997 52.381 0.00 0.00 40.04 5.54
3633 5417 3.056536 TGGAGGACTTCAGAACAGATTCG 60.057 47.826 0.00 0.00 40.04 3.34
3711 5495 2.677836 GCTACTTTTGATGGATGCACGA 59.322 45.455 0.00 0.00 0.00 4.35
3848 5643 6.405538 ACAAACAAAAAGCCTCAAGAAATCA 58.594 32.000 0.00 0.00 0.00 2.57
3874 5669 5.630680 CCATGTTAACAGTGTGCAAAATCTC 59.369 40.000 14.65 0.00 0.00 2.75
3938 5738 3.124921 GGAACCACGGCCATCACG 61.125 66.667 2.24 0.00 37.36 4.35
3947 5747 2.280524 TTGTCTGCCGGAACCACG 60.281 61.111 5.05 0.00 0.00 4.94
3950 5750 2.032681 AGCTTGTCTGCCGGAACC 59.967 61.111 5.05 0.00 0.00 3.62
4034 5834 9.783256 GTTGTTTTCAGCTCGGTTATTATTATT 57.217 29.630 0.00 0.00 0.00 1.40
4035 5835 8.120465 CGTTGTTTTCAGCTCGGTTATTATTAT 58.880 33.333 0.00 0.00 0.00 1.28
4036 5836 7.331440 TCGTTGTTTTCAGCTCGGTTATTATTA 59.669 33.333 0.00 0.00 0.00 0.98
4355 6158 0.527817 GGAGTTCCAGTATGACGGCG 60.528 60.000 4.80 4.80 39.69 6.46
4356 6159 0.535335 TGGAGTTCCAGTATGACGGC 59.465 55.000 0.00 0.00 42.01 5.68
4440 6260 8.547967 TGATAATTTTCACCTGACAAGAGTAC 57.452 34.615 0.00 0.00 0.00 2.73
4486 6306 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
4488 6308 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
4489 6309 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
4490 6310 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
4516 6336 9.716531 GACCCAACTTTGTACTAAAGTTAGTAT 57.283 33.333 23.56 15.20 45.57 2.12
4517 6337 8.703743 TGACCCAACTTTGTACTAAAGTTAGTA 58.296 33.333 23.56 6.81 45.57 1.82
4518 6338 7.567458 TGACCCAACTTTGTACTAAAGTTAGT 58.433 34.615 23.56 22.58 45.57 2.24
4519 6339 8.617290 ATGACCCAACTTTGTACTAAAGTTAG 57.383 34.615 23.56 20.79 45.57 2.34
4520 6340 8.434392 AGATGACCCAACTTTGTACTAAAGTTA 58.566 33.333 23.56 14.79 45.57 2.24
4522 6342 6.838382 AGATGACCCAACTTTGTACTAAAGT 58.162 36.000 14.04 14.04 41.82 2.66
4523 6343 9.449719 AATAGATGACCCAACTTTGTACTAAAG 57.550 33.333 13.08 13.08 0.00 1.85
4524 6344 9.802039 AAATAGATGACCCAACTTTGTACTAAA 57.198 29.630 0.00 0.00 0.00 1.85
4525 6345 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
4526 6346 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
4527 6347 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
4528 6348 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
4529 6349 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
4530 6350 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
4531 6351 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
4532 6352 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
4533 6353 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
4534 6354 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
4535 6355 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
4536 6356 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
4537 6357 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
4538 6358 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
4539 6359 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
4540 6360 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4541 6361 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4542 6362 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4543 6363 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4544 6364 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4545 6365 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4546 6366 3.198417 GGTACTCCCTCCGTTCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
4547 6367 2.026542 GGTACTCCCTCCGTTCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
4548 6368 1.348696 GGTACTCCCTCCGTTCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
4549 6369 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
4550 6370 0.178926 TGGTACTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 30.28 3.53
4551 6371 0.178926 TTGGTACTCCCTCCGTTCCA 60.179 55.000 0.00 0.00 31.17 3.53
4552 6372 1.201424 ATTGGTACTCCCTCCGTTCC 58.799 55.000 0.00 0.00 0.00 3.62
4553 6373 3.007635 CAAATTGGTACTCCCTCCGTTC 58.992 50.000 0.00 0.00 0.00 3.95
4554 6374 2.374170 ACAAATTGGTACTCCCTCCGTT 59.626 45.455 0.00 0.00 0.00 4.44
4555 6375 1.982958 ACAAATTGGTACTCCCTCCGT 59.017 47.619 0.00 0.00 0.00 4.69
4556 6376 2.781681 ACAAATTGGTACTCCCTCCG 57.218 50.000 0.00 0.00 0.00 4.63
4557 6377 4.412528 AGGATACAAATTGGTACTCCCTCC 59.587 45.833 13.60 8.75 41.41 4.30
4558 6378 5.130477 TGAGGATACAAATTGGTACTCCCTC 59.870 44.000 20.59 20.59 37.74 4.30
4559 6379 5.036916 TGAGGATACAAATTGGTACTCCCT 58.963 41.667 13.60 11.54 41.41 4.20
4560 6380 5.104485 ACTGAGGATACAAATTGGTACTCCC 60.104 44.000 13.60 8.11 41.41 4.30
4561 6381 5.990668 ACTGAGGATACAAATTGGTACTCC 58.009 41.667 9.40 10.98 41.41 3.85
4562 6382 7.331791 AGAACTGAGGATACAAATTGGTACTC 58.668 38.462 0.00 2.15 41.41 2.59
4563 6383 7.038302 TGAGAACTGAGGATACAAATTGGTACT 60.038 37.037 0.00 0.00 41.41 2.73
4564 6384 7.103641 TGAGAACTGAGGATACAAATTGGTAC 58.896 38.462 0.00 0.00 41.41 3.34
4565 6385 7.252612 TGAGAACTGAGGATACAAATTGGTA 57.747 36.000 0.00 0.00 41.41 3.25
4566 6386 6.126863 TGAGAACTGAGGATACAAATTGGT 57.873 37.500 0.00 0.00 41.41 3.67
4567 6387 8.781196 CATATGAGAACTGAGGATACAAATTGG 58.219 37.037 0.00 0.00 41.41 3.16
4573 6393 6.841229 AGGTTCATATGAGAACTGAGGATACA 59.159 38.462 5.39 0.00 45.52 2.29
4595 6415 4.043596 AGAGGGCTCTGATTATTCAAGGT 58.956 43.478 0.00 0.00 38.75 3.50
4621 6442 7.308782 GTGAGGTCACAACTTTCTATTATGG 57.691 40.000 5.21 0.00 45.75 2.74
4688 6513 8.338985 TGCAATACGAAAATCAGCAATTTATC 57.661 30.769 0.00 0.00 36.54 1.75
4785 6610 9.653287 ACTCTTTTCGATACATGTAAAATCTGA 57.347 29.630 10.14 4.04 0.00 3.27
4960 6786 8.089625 TGATCAAATTGTATAGAGACTTCCCA 57.910 34.615 0.00 0.00 0.00 4.37
5122 6950 2.954792 ACGGAGGGATTCTAATACCGT 58.045 47.619 0.00 0.00 44.60 4.83
5200 7045 8.213518 TCTAATATGGAGCAAAATCAGTGAAC 57.786 34.615 0.00 0.00 0.00 3.18
5305 7176 5.620738 TGCTCAGGTAATCTTCTATGCTT 57.379 39.130 0.00 0.00 0.00 3.91
5418 7290 6.183360 CCGATATTTGGTCATTTCTTCGTTGA 60.183 38.462 0.00 0.00 0.00 3.18
5447 7319 7.389607 GGTACATCACATAGTTGTTTGGTACTT 59.610 37.037 0.00 0.00 35.36 2.24
5723 7595 8.499403 AAAGAAGAATATGTTAGAGGTTCTGC 57.501 34.615 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.