Multiple sequence alignment - TraesCS5B01G136000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G136000 chr5B 100.000 4719 0 0 1 4719 255665772 255670490 0.000000e+00 8715.0
1 TraesCS5B01G136000 chr5B 90.123 81 6 2 574 653 111200174 111200095 2.320000e-18 104.0
2 TraesCS5B01G136000 chr5B 88.571 70 7 1 574 642 355610111 355610180 3.030000e-12 84.2
3 TraesCS5B01G136000 chr5B 100.000 28 0 0 513 540 255666255 255666282 9.000000e-03 52.8
4 TraesCS5B01G136000 chr5B 100.000 28 0 0 484 511 255666284 255666311 9.000000e-03 52.8
5 TraesCS5B01G136000 chr5D 96.134 4087 126 12 641 4713 242859540 242855472 0.000000e+00 6643.0
6 TraesCS5B01G136000 chr5D 91.837 441 33 2 1 440 242859977 242859539 3.120000e-171 612.0
7 TraesCS5B01G136000 chr5D 88.406 69 7 1 574 642 550577764 550577697 1.090000e-11 82.4
8 TraesCS5B01G136000 chr5D 88.406 69 5 3 574 641 240849510 240849444 3.910000e-11 80.5
9 TraesCS5B01G136000 chr5D 97.368 38 1 0 513 550 69427614 69427651 1.100000e-06 65.8
10 TraesCS5B01G136000 chr5A 95.398 4085 141 19 656 4719 309307040 309311098 0.000000e+00 6458.0
11 TraesCS5B01G136000 chr5A 84.800 125 8 5 2 125 309304842 309304956 1.070000e-21 115.0
12 TraesCS5B01G136000 chr5A 86.957 69 6 3 574 641 312920289 312920355 1.820000e-09 75.0
13 TraesCS5B01G136000 chr5A 97.436 39 1 0 513 551 60132551 60132589 3.050000e-07 67.6
14 TraesCS5B01G136000 chr6A 92.105 76 5 1 439 513 105589588 105589513 6.460000e-19 106.0
15 TraesCS5B01G136000 chr2B 85.507 69 8 2 576 643 750016929 750016996 2.360000e-08 71.3
16 TraesCS5B01G136000 chr2B 84.286 70 9 2 575 643 714032862 714032930 3.050000e-07 67.6
17 TraesCS5B01G136000 chr4B 84.507 71 10 1 574 643 615134882 615134952 8.470000e-08 69.4
18 TraesCS5B01G136000 chr1A 84.507 71 7 4 574 642 352138212 352138144 3.050000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G136000 chr5B 255665772 255670490 4718 False 8715.0 8715 100.0000 1 4719 1 chr5B.!!$F1 4718
1 TraesCS5B01G136000 chr5D 242855472 242859977 4505 True 3627.5 6643 93.9855 1 4713 2 chr5D.!!$R3 4712
2 TraesCS5B01G136000 chr5A 309304842 309311098 6256 False 3286.5 6458 90.0990 2 4719 2 chr5A.!!$F3 4717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
631 2381 0.179009 GGGGCCTAATAAACCCGGAC 60.179 60.0 0.73 0.0 45.27 4.79 F
935 2696 0.331954 TCTCTGGAGTCTAAGGCCGT 59.668 55.0 0.00 0.0 0.00 5.68 F
941 2702 0.396001 GAGTCTAAGGCCGTCCTCCT 60.396 60.0 0.00 0.0 43.40 3.69 F
1831 3592 1.361204 TGCTCTTGGGTGAGATGGAA 58.639 50.0 0.00 0.0 36.23 3.53 F
3445 5206 0.528017 TCTCTAGTGCTCTGCGGTTG 59.472 55.0 0.00 0.0 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 3276 0.475906 AGGGAGCATTCCATACTGCC 59.524 55.000 0.00 0.00 45.98 4.85 R
2524 4285 1.270826 CTTGCCTCGTCAAGACTCTCA 59.729 52.381 8.41 0.00 44.61 3.27 R
2873 4634 2.229792 TGGACCTTCAAGTTGCATGTC 58.770 47.619 0.00 0.03 0.00 3.06 R
3552 5313 1.131638 TGGTCTTCACTTGCTGAGGT 58.868 50.000 0.00 0.00 0.00 3.85 R
4433 6198 1.271926 ACACCTGATACCCTTGCAACC 60.272 52.381 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.661341 GAGGCTGGCAGAACATGTAG 58.339 55.000 20.86 0.00 0.00 2.74
54 55 3.432186 GGCTGGCAGAACATGTAGATACA 60.432 47.826 20.86 0.00 40.98 2.29
100 101 9.674824 TTAGATTAGATACTAACGCTACTTTGC 57.325 33.333 0.00 0.00 0.00 3.68
140 1890 0.951040 CTGACTGACGCCACCCTTTC 60.951 60.000 0.00 0.00 0.00 2.62
142 1892 0.606604 GACTGACGCCACCCTTTCTA 59.393 55.000 0.00 0.00 0.00 2.10
191 1941 7.094975 CCAATCTTCCTACACGTTTTACATTGA 60.095 37.037 0.00 0.00 0.00 2.57
204 1954 2.574006 ACATTGAGCACATGGACACT 57.426 45.000 0.00 0.00 0.00 3.55
222 1972 1.064758 ACTGTCACTTGGCACCTCAAA 60.065 47.619 0.00 0.00 0.00 2.69
237 1987 5.147162 CACCTCAAAAGCTTCGTTAATGAC 58.853 41.667 0.00 0.00 0.00 3.06
244 1994 2.301870 AGCTTCGTTAATGACTGGTGGA 59.698 45.455 0.00 0.00 0.00 4.02
249 1999 6.128117 GCTTCGTTAATGACTGGTGGAATAAA 60.128 38.462 0.00 0.00 0.00 1.40
251 2001 7.747155 TCGTTAATGACTGGTGGAATAAAAA 57.253 32.000 0.00 0.00 0.00 1.94
299 2049 0.977395 GCTATGGCCTCCCTCGTTAT 59.023 55.000 3.32 0.00 0.00 1.89
304 2054 0.815615 GGCCTCCCTCGTTATGCTTG 60.816 60.000 0.00 0.00 0.00 4.01
393 2143 4.381612 CGCCGCCTATCCTTCTAAATATCA 60.382 45.833 0.00 0.00 0.00 2.15
434 2184 1.165284 GGGTTACCGTGGACGCAAAA 61.165 55.000 0.00 0.00 38.18 2.44
453 2203 4.532314 AAAAACTACTACCTCTGTCCGG 57.468 45.455 0.00 0.00 0.00 5.14
454 2204 3.446442 AAACTACTACCTCTGTCCGGA 57.554 47.619 0.00 0.00 0.00 5.14
455 2205 3.666345 AACTACTACCTCTGTCCGGAT 57.334 47.619 7.81 0.00 0.00 4.18
456 2206 3.666345 ACTACTACCTCTGTCCGGATT 57.334 47.619 7.81 0.00 0.00 3.01
457 2207 3.978610 ACTACTACCTCTGTCCGGATTT 58.021 45.455 7.81 0.00 0.00 2.17
458 2208 5.121380 ACTACTACCTCTGTCCGGATTTA 57.879 43.478 7.81 0.00 0.00 1.40
459 2209 5.703310 ACTACTACCTCTGTCCGGATTTAT 58.297 41.667 7.81 0.00 0.00 1.40
460 2210 6.134754 ACTACTACCTCTGTCCGGATTTATT 58.865 40.000 7.81 0.00 0.00 1.40
461 2211 7.293073 ACTACTACCTCTGTCCGGATTTATTA 58.707 38.462 7.81 0.00 0.00 0.98
462 2212 7.781693 ACTACTACCTCTGTCCGGATTTATTAA 59.218 37.037 7.81 0.00 0.00 1.40
463 2213 7.052142 ACTACCTCTGTCCGGATTTATTAAG 57.948 40.000 7.81 4.01 0.00 1.85
464 2214 4.704965 ACCTCTGTCCGGATTTATTAAGC 58.295 43.478 7.81 0.00 0.00 3.09
465 2215 4.065789 CCTCTGTCCGGATTTATTAAGCC 58.934 47.826 7.81 0.00 36.45 4.35
466 2216 4.065789 CTCTGTCCGGATTTATTAAGCCC 58.934 47.826 7.81 0.00 36.44 5.19
467 2217 3.146847 CTGTCCGGATTTATTAAGCCCC 58.853 50.000 7.81 0.00 36.44 5.80
468 2218 2.158579 TGTCCGGATTTATTAAGCCCCC 60.159 50.000 7.81 0.00 36.44 5.40
469 2219 2.107726 GTCCGGATTTATTAAGCCCCCT 59.892 50.000 7.81 0.00 36.44 4.79
470 2220 3.328637 GTCCGGATTTATTAAGCCCCCTA 59.671 47.826 7.81 0.00 36.44 3.53
471 2221 3.982052 TCCGGATTTATTAAGCCCCCTAA 59.018 43.478 0.00 0.00 36.44 2.69
472 2222 4.604490 TCCGGATTTATTAAGCCCCCTAAT 59.396 41.667 0.00 0.00 36.44 1.73
473 2223 5.791664 TCCGGATTTATTAAGCCCCCTAATA 59.208 40.000 0.00 0.00 36.44 0.98
474 2224 6.449041 TCCGGATTTATTAAGCCCCCTAATAT 59.551 38.462 0.00 0.00 36.44 1.28
475 2225 7.036425 TCCGGATTTATTAAGCCCCCTAATATT 60.036 37.037 0.00 0.00 36.44 1.28
476 2226 7.618117 CCGGATTTATTAAGCCCCCTAATATTT 59.382 37.037 0.00 0.00 36.44 1.40
477 2227 8.466798 CGGATTTATTAAGCCCCCTAATATTTG 58.533 37.037 0.00 0.00 36.44 2.32
478 2228 9.541884 GGATTTATTAAGCCCCCTAATATTTGA 57.458 33.333 0.00 0.00 33.61 2.69
480 2230 8.417273 TTTATTAAGCCCCCTAATATTTGAGC 57.583 34.615 0.00 0.00 0.00 4.26
481 2231 2.980246 AGCCCCCTAATATTTGAGCC 57.020 50.000 0.00 0.00 0.00 4.70
482 2232 2.143602 AGCCCCCTAATATTTGAGCCA 58.856 47.619 0.00 0.00 0.00 4.75
483 2233 2.517980 AGCCCCCTAATATTTGAGCCAA 59.482 45.455 0.00 0.00 0.00 4.52
484 2234 3.052186 AGCCCCCTAATATTTGAGCCAAA 60.052 43.478 0.00 3.33 37.75 3.28
485 2235 3.069586 GCCCCCTAATATTTGAGCCAAAC 59.930 47.826 0.00 0.00 36.13 2.93
486 2236 4.546674 CCCCCTAATATTTGAGCCAAACT 58.453 43.478 0.00 0.00 36.13 2.66
487 2237 4.962362 CCCCCTAATATTTGAGCCAAACTT 59.038 41.667 0.00 3.66 36.13 2.66
488 2238 5.425217 CCCCCTAATATTTGAGCCAAACTTT 59.575 40.000 0.00 3.52 36.13 2.66
489 2239 6.340522 CCCCTAATATTTGAGCCAAACTTTG 58.659 40.000 0.00 0.00 36.13 2.77
490 2240 6.154363 CCCCTAATATTTGAGCCAAACTTTGA 59.846 38.462 2.87 0.00 36.13 2.69
491 2241 7.035612 CCCTAATATTTGAGCCAAACTTTGAC 58.964 38.462 2.87 0.00 36.13 3.18
492 2242 7.035612 CCTAATATTTGAGCCAAACTTTGACC 58.964 38.462 2.87 0.00 36.13 4.02
493 2243 6.418057 AATATTTGAGCCAAACTTTGACCA 57.582 33.333 2.87 0.00 36.13 4.02
494 2244 4.961438 ATTTGAGCCAAACTTTGACCAT 57.039 36.364 2.87 0.00 36.13 3.55
495 2245 4.751767 TTTGAGCCAAACTTTGACCATT 57.248 36.364 2.87 0.00 0.00 3.16
496 2246 4.320608 TTGAGCCAAACTTTGACCATTC 57.679 40.909 2.87 0.00 0.00 2.67
497 2247 3.295093 TGAGCCAAACTTTGACCATTCA 58.705 40.909 2.87 0.00 0.00 2.57
498 2248 3.896888 TGAGCCAAACTTTGACCATTCAT 59.103 39.130 2.87 0.00 0.00 2.57
499 2249 5.076182 TGAGCCAAACTTTGACCATTCATA 58.924 37.500 2.87 0.00 0.00 2.15
500 2250 5.538053 TGAGCCAAACTTTGACCATTCATAA 59.462 36.000 2.87 0.00 0.00 1.90
501 2251 6.029346 AGCCAAACTTTGACCATTCATAAG 57.971 37.500 2.87 0.00 0.00 1.73
502 2252 5.774690 AGCCAAACTTTGACCATTCATAAGA 59.225 36.000 2.87 0.00 0.00 2.10
503 2253 6.438425 AGCCAAACTTTGACCATTCATAAGAT 59.562 34.615 2.87 0.00 0.00 2.40
504 2254 7.038799 AGCCAAACTTTGACCATTCATAAGATT 60.039 33.333 2.87 0.00 0.00 2.40
505 2255 8.250332 GCCAAACTTTGACCATTCATAAGATTA 58.750 33.333 2.87 0.00 0.00 1.75
576 2326 9.448438 TGCTACAAATAATCTTTGTGACATAGT 57.552 29.630 12.32 0.00 42.05 2.12
588 2338 9.743057 TCTTTGTGACATAGTTAAATTTGTTGG 57.257 29.630 0.00 0.00 0.00 3.77
589 2339 9.528018 CTTTGTGACATAGTTAAATTTGTTGGT 57.472 29.630 0.00 0.00 0.00 3.67
590 2340 9.522804 TTTGTGACATAGTTAAATTTGTTGGTC 57.477 29.630 0.00 2.37 0.00 4.02
591 2341 8.226819 TGTGACATAGTTAAATTTGTTGGTCA 57.773 30.769 0.00 4.81 0.00 4.02
592 2342 8.687242 TGTGACATAGTTAAATTTGTTGGTCAA 58.313 29.630 0.00 0.00 33.88 3.18
604 2354 6.865834 TTTGTTGGTCAAATATTAGCCCAT 57.134 33.333 0.00 0.00 40.56 4.00
605 2355 7.962995 TTTGTTGGTCAAATATTAGCCCATA 57.037 32.000 0.00 0.00 40.56 2.74
606 2356 7.962995 TTGTTGGTCAAATATTAGCCCATAA 57.037 32.000 0.00 0.00 32.64 1.90
607 2357 8.546083 TTGTTGGTCAAATATTAGCCCATAAT 57.454 30.769 0.00 0.00 34.34 1.28
608 2358 7.950512 TGTTGGTCAAATATTAGCCCATAATG 58.049 34.615 0.00 0.00 35.63 1.90
609 2359 7.782168 TGTTGGTCAAATATTAGCCCATAATGA 59.218 33.333 0.00 0.00 35.63 2.57
610 2360 8.299570 GTTGGTCAAATATTAGCCCATAATGAG 58.700 37.037 0.00 0.00 35.63 2.90
611 2361 7.754624 TGGTCAAATATTAGCCCATAATGAGA 58.245 34.615 0.00 0.00 35.63 3.27
612 2362 7.884877 TGGTCAAATATTAGCCCATAATGAGAG 59.115 37.037 0.00 0.00 35.63 3.20
613 2363 7.337942 GGTCAAATATTAGCCCATAATGAGAGG 59.662 40.741 0.00 0.00 35.63 3.69
614 2364 7.337942 GTCAAATATTAGCCCATAATGAGAGGG 59.662 40.741 0.00 0.00 45.68 4.30
615 2365 5.983333 ATATTAGCCCATAATGAGAGGGG 57.017 43.478 0.00 0.00 43.04 4.79
618 2368 2.874260 CCCATAATGAGAGGGGCCT 58.126 57.895 0.84 0.00 38.98 5.19
619 2369 2.044793 CCCATAATGAGAGGGGCCTA 57.955 55.000 0.84 0.00 38.98 3.93
620 2370 2.348472 CCCATAATGAGAGGGGCCTAA 58.652 52.381 0.84 0.00 38.98 2.69
621 2371 2.922283 CCCATAATGAGAGGGGCCTAAT 59.078 50.000 0.84 0.00 38.98 1.73
622 2372 4.111577 CCCATAATGAGAGGGGCCTAATA 58.888 47.826 0.84 0.00 38.98 0.98
623 2373 4.540099 CCCATAATGAGAGGGGCCTAATAA 59.460 45.833 0.84 0.00 38.98 1.40
624 2374 5.015178 CCCATAATGAGAGGGGCCTAATAAA 59.985 44.000 0.84 0.00 38.98 1.40
625 2375 5.946377 CCATAATGAGAGGGGCCTAATAAAC 59.054 44.000 0.84 0.00 0.00 2.01
626 2376 4.455070 AATGAGAGGGGCCTAATAAACC 57.545 45.455 0.84 0.00 0.00 3.27
627 2377 2.132686 TGAGAGGGGCCTAATAAACCC 58.867 52.381 0.84 0.00 43.69 4.11
629 2379 4.914128 GGGGCCTAATAAACCCGG 57.086 61.111 0.84 0.00 45.27 5.73
630 2380 2.233603 GGGGCCTAATAAACCCGGA 58.766 57.895 0.73 0.00 45.27 5.14
631 2381 0.179009 GGGGCCTAATAAACCCGGAC 60.179 60.000 0.73 0.00 45.27 4.79
632 2382 0.533531 GGGCCTAATAAACCCGGACG 60.534 60.000 0.73 0.00 32.92 4.79
633 2383 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
634 2384 0.465287 GCCTAATAAACCCGGACGGA 59.535 55.000 13.13 0.00 37.50 4.69
635 2385 1.539712 GCCTAATAAACCCGGACGGAG 60.540 57.143 13.13 5.04 37.50 4.63
636 2386 1.069668 CCTAATAAACCCGGACGGAGG 59.930 57.143 13.13 5.18 37.50 4.30
637 2387 1.758862 CTAATAAACCCGGACGGAGGT 59.241 52.381 13.13 0.00 38.27 3.85
638 2388 1.864669 AATAAACCCGGACGGAGGTA 58.135 50.000 13.13 1.24 34.45 3.08
639 2389 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
654 2404 8.526147 GGACGGAGGTAGTAGCATATTATTTTA 58.474 37.037 1.58 0.00 0.00 1.52
656 2406 8.863086 ACGGAGGTAGTAGCATATTATTTTACA 58.137 33.333 1.58 0.00 0.00 2.41
681 2437 5.581479 TGAATAATTGCCATGTTGTGATTGC 59.419 36.000 0.00 0.00 0.00 3.56
777 2533 2.486548 GGCCATTCTTATGCCTCCGTTA 60.487 50.000 0.00 0.00 0.00 3.18
814 2575 3.181433 ACCTTTTCAGTAAACCTCCCCAG 60.181 47.826 0.00 0.00 0.00 4.45
926 2687 2.888863 CCGCTGGTCTCTGGAGTC 59.111 66.667 0.00 0.00 0.00 3.36
927 2688 1.680651 CCGCTGGTCTCTGGAGTCT 60.681 63.158 0.00 0.00 0.00 3.24
935 2696 0.331954 TCTCTGGAGTCTAAGGCCGT 59.668 55.000 0.00 0.00 0.00 5.68
941 2702 0.396001 GAGTCTAAGGCCGTCCTCCT 60.396 60.000 0.00 0.00 43.40 3.69
974 2735 2.203209 CCGCATTGCCTACCTCCC 60.203 66.667 2.41 0.00 0.00 4.30
1144 2905 4.070552 GTCCTCGCCAACCGCTCT 62.071 66.667 0.00 0.00 36.73 4.09
1150 2911 1.449601 CGCCAACCGCTCTACCAAT 60.450 57.895 0.00 0.00 34.21 3.16
1252 3013 4.828296 GACCCCGACCTCGCCCTA 62.828 72.222 0.00 0.00 38.18 3.53
1729 3490 3.406595 GATTGAGGCGAGGTGGGGG 62.407 68.421 0.00 0.00 0.00 5.40
1748 3509 2.339556 GCAGGGTGCGTGCCAAATA 61.340 57.895 0.00 0.00 39.02 1.40
1831 3592 1.361204 TGCTCTTGGGTGAGATGGAA 58.639 50.000 0.00 0.00 36.23 3.53
2524 4285 7.566138 ACATTGATTGATGGGTTCATTAGGAAT 59.434 33.333 0.00 0.00 37.93 3.01
2892 4653 2.227388 CAGACATGCAACTTGAAGGTCC 59.773 50.000 10.40 0.00 0.00 4.46
2974 4735 4.357142 CGATGAAAGCTGCTGCATATTTT 58.643 39.130 18.42 9.12 42.74 1.82
3048 4809 7.655490 TGTTTAGTTACTGGTCTCACTAACTC 58.345 38.462 0.00 0.00 35.57 3.01
3209 4970 4.320057 GCCTATGCAGACACAATATGCTTC 60.320 45.833 0.00 0.00 46.22 3.86
3227 4988 3.247648 GCTTCGTAACGCATTGGACATAT 59.752 43.478 0.00 0.00 0.00 1.78
3374 5135 5.291178 CAGATCAACTTGAGATAGCCTCTG 58.709 45.833 0.00 0.62 42.44 3.35
3388 5149 4.222124 AGCCTCTGGGTACAAAATACTG 57.778 45.455 0.00 0.00 34.45 2.74
3445 5206 0.528017 TCTCTAGTGCTCTGCGGTTG 59.472 55.000 0.00 0.00 0.00 3.77
3512 5273 7.696992 TTTACTTGTTCCTGATATTGTTCCC 57.303 36.000 0.00 0.00 0.00 3.97
3541 5302 6.891908 ACTTGCAAATGAGGGATAACACTTAT 59.108 34.615 0.00 0.00 0.00 1.73
3542 5303 7.397192 ACTTGCAAATGAGGGATAACACTTATT 59.603 33.333 0.00 0.00 37.34 1.40
3543 5304 7.716799 TGCAAATGAGGGATAACACTTATTT 57.283 32.000 0.00 0.00 43.33 1.40
3551 5312 9.527157 TGAGGGATAACACTTATTTGATTTTCA 57.473 29.630 0.00 0.00 0.00 2.69
3554 5315 9.366216 GGGATAACACTTATTTGATTTTCAACC 57.634 33.333 0.00 0.00 35.89 3.77
3570 5331 1.876156 CAACCTCAGCAAGTGAAGACC 59.124 52.381 0.00 0.00 33.60 3.85
3821 5583 6.588719 TGCAAAACTGCTAAAATATCACCT 57.411 33.333 0.00 0.00 35.49 4.00
3894 5656 9.457110 CTAGTGTACTAATCTTGTGATCACATC 57.543 37.037 28.32 1.76 41.52 3.06
3946 5708 3.346315 TGCCGATTTCACATTCACATCT 58.654 40.909 0.00 0.00 0.00 2.90
3948 5710 5.125356 TGCCGATTTCACATTCACATCTAT 58.875 37.500 0.00 0.00 0.00 1.98
3949 5711 5.589855 TGCCGATTTCACATTCACATCTATT 59.410 36.000 0.00 0.00 0.00 1.73
3962 5724 4.840680 TCACATCTATTAGGGGAGTGGATG 59.159 45.833 0.00 0.00 36.27 3.51
4145 5909 2.555670 GGGTTTACAGGGCATGGTGTTA 60.556 50.000 3.46 0.00 0.00 2.41
4205 5969 3.640967 ACTGCTTTGGCTGTTGGAATTTA 59.359 39.130 0.00 0.00 45.94 1.40
4230 5994 3.857093 GTGTACAAAGCCACAAACACTTG 59.143 43.478 0.00 0.00 35.50 3.16
4483 6255 2.268280 CTGAGGCCTGGTGCTCTG 59.732 66.667 12.00 0.00 40.92 3.35
4520 6292 3.751698 GCCGAAAAGTTCTGATTGGTACT 59.248 43.478 0.00 0.00 0.00 2.73
4521 6293 4.378459 GCCGAAAAGTTCTGATTGGTACTG 60.378 45.833 0.00 0.00 0.00 2.74
4558 6330 9.623000 TGATTGATGACAATTCTATGAGACATT 57.377 29.630 0.00 0.00 45.30 2.71
4581 6356 8.928733 CATTTAGGTTCATTTCAAGGATTTGTG 58.071 33.333 0.00 0.00 35.73 3.33
4593 6368 3.084786 AGGATTTGTGGCACTTTAGAGC 58.915 45.455 19.83 2.90 0.00 4.09
4594 6369 2.819608 GGATTTGTGGCACTTTAGAGCA 59.180 45.455 19.83 0.00 33.19 4.26
4641 6416 4.207165 ACAGAAGGCAACACATGTTAACT 58.793 39.130 7.22 0.00 36.32 2.24
4648 6423 6.446318 AGGCAACACATGTTAACTGTTAATG 58.554 36.000 15.36 12.77 36.32 1.90
4649 6424 6.264292 AGGCAACACATGTTAACTGTTAATGA 59.736 34.615 15.36 6.81 36.32 2.57
4650 6425 6.362283 GGCAACACATGTTAACTGTTAATGAC 59.638 38.462 15.36 7.01 36.32 3.06
4651 6426 7.138736 GCAACACATGTTAACTGTTAATGACT 58.861 34.615 15.36 2.12 36.32 3.41
4689 6467 1.103803 CTAGCGACTAGTGGAAGCCA 58.896 55.000 9.33 0.00 30.16 4.75
4696 6474 2.608090 GACTAGTGGAAGCCAAATACGC 59.392 50.000 0.00 0.00 34.18 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 6.917217 ACAAAGAGATAGATGCAAAGTAGC 57.083 37.500 0.00 0.00 0.00 3.58
100 101 8.859090 AGTCAGAGGATTACAAAGAGATAGATG 58.141 37.037 0.00 0.00 0.00 2.90
191 1941 0.761187 AGTGACAGTGTCCATGTGCT 59.239 50.000 20.43 6.33 0.00 4.40
204 1954 2.023673 CTTTTGAGGTGCCAAGTGACA 58.976 47.619 0.00 0.00 0.00 3.58
222 1972 3.074412 CCACCAGTCATTAACGAAGCTT 58.926 45.455 0.00 0.00 0.00 3.74
249 1999 4.833390 TGGGGTTTTGTTTGTCGATTTTT 58.167 34.783 0.00 0.00 0.00 1.94
251 2001 4.473477 TTGGGGTTTTGTTTGTCGATTT 57.527 36.364 0.00 0.00 0.00 2.17
254 2004 4.645588 ACTTATTGGGGTTTTGTTTGTCGA 59.354 37.500 0.00 0.00 0.00 4.20
270 2020 2.880890 GGAGGCCATAGCACACTTATTG 59.119 50.000 5.01 0.00 42.56 1.90
304 2054 6.231211 TCTAGTTCCAAATTGTCCAAGAGAC 58.769 40.000 0.00 0.00 46.51 3.36
393 2143 4.568592 CCAAAACTTGGCCTCCTCTAAGAT 60.569 45.833 3.32 0.00 45.17 2.40
434 2184 3.446442 TCCGGACAGAGGTAGTAGTTT 57.554 47.619 0.00 0.00 0.00 2.66
437 2187 6.651975 AATAAATCCGGACAGAGGTAGTAG 57.348 41.667 6.12 0.00 0.00 2.57
438 2188 7.255730 GCTTAATAAATCCGGACAGAGGTAGTA 60.256 40.741 6.12 0.00 0.00 1.82
439 2189 6.462628 GCTTAATAAATCCGGACAGAGGTAGT 60.463 42.308 6.12 0.00 0.00 2.73
440 2190 5.927115 GCTTAATAAATCCGGACAGAGGTAG 59.073 44.000 6.12 1.03 0.00 3.18
441 2191 5.221581 GGCTTAATAAATCCGGACAGAGGTA 60.222 44.000 6.12 0.00 0.00 3.08
442 2192 4.444449 GGCTTAATAAATCCGGACAGAGGT 60.444 45.833 6.12 0.00 0.00 3.85
443 2193 4.065789 GGCTTAATAAATCCGGACAGAGG 58.934 47.826 6.12 0.00 0.00 3.69
444 2194 4.065789 GGGCTTAATAAATCCGGACAGAG 58.934 47.826 6.12 0.00 0.00 3.35
445 2195 3.181448 GGGGCTTAATAAATCCGGACAGA 60.181 47.826 6.12 0.00 0.00 3.41
446 2196 3.146847 GGGGCTTAATAAATCCGGACAG 58.853 50.000 6.12 0.00 0.00 3.51
447 2197 2.158579 GGGGGCTTAATAAATCCGGACA 60.159 50.000 6.12 0.00 0.00 4.02
448 2198 2.107726 AGGGGGCTTAATAAATCCGGAC 59.892 50.000 6.12 0.00 0.00 4.79
449 2199 2.424793 AGGGGGCTTAATAAATCCGGA 58.575 47.619 6.61 6.61 0.00 5.14
450 2200 2.971901 AGGGGGCTTAATAAATCCGG 57.028 50.000 0.00 0.00 0.00 5.14
451 2201 8.466798 CAAATATTAGGGGGCTTAATAAATCCG 58.533 37.037 0.00 0.00 0.00 4.18
452 2202 9.541884 TCAAATATTAGGGGGCTTAATAAATCC 57.458 33.333 0.00 0.00 0.00 3.01
454 2204 9.035890 GCTCAAATATTAGGGGGCTTAATAAAT 57.964 33.333 0.00 0.00 0.00 1.40
455 2205 7.453439 GGCTCAAATATTAGGGGGCTTAATAAA 59.547 37.037 6.30 0.00 0.00 1.40
456 2206 6.951778 GGCTCAAATATTAGGGGGCTTAATAA 59.048 38.462 6.30 0.00 0.00 1.40
457 2207 6.046168 TGGCTCAAATATTAGGGGGCTTAATA 59.954 38.462 12.71 0.00 0.00 0.98
458 2208 5.162881 TGGCTCAAATATTAGGGGGCTTAAT 60.163 40.000 12.71 0.00 0.00 1.40
459 2209 4.169068 TGGCTCAAATATTAGGGGGCTTAA 59.831 41.667 12.71 0.00 0.00 1.85
460 2210 3.724738 TGGCTCAAATATTAGGGGGCTTA 59.275 43.478 12.71 0.02 0.00 3.09
461 2211 2.517980 TGGCTCAAATATTAGGGGGCTT 59.482 45.455 12.71 0.00 0.00 4.35
462 2212 2.143602 TGGCTCAAATATTAGGGGGCT 58.856 47.619 12.71 0.00 0.00 5.19
463 2213 2.675658 TGGCTCAAATATTAGGGGGC 57.324 50.000 6.54 6.54 0.00 5.80
464 2214 4.546674 AGTTTGGCTCAAATATTAGGGGG 58.453 43.478 4.07 0.00 35.74 5.40
465 2215 6.154363 TCAAAGTTTGGCTCAAATATTAGGGG 59.846 38.462 15.47 0.00 35.74 4.79
466 2216 7.035612 GTCAAAGTTTGGCTCAAATATTAGGG 58.964 38.462 12.99 0.00 35.74 3.53
467 2217 7.035612 GGTCAAAGTTTGGCTCAAATATTAGG 58.964 38.462 19.07 0.00 35.74 2.69
468 2218 7.601856 TGGTCAAAGTTTGGCTCAAATATTAG 58.398 34.615 19.07 0.00 35.74 1.73
469 2219 7.531857 TGGTCAAAGTTTGGCTCAAATATTA 57.468 32.000 19.07 0.00 35.74 0.98
470 2220 6.418057 TGGTCAAAGTTTGGCTCAAATATT 57.582 33.333 19.07 0.00 35.74 1.28
471 2221 6.610075 ATGGTCAAAGTTTGGCTCAAATAT 57.390 33.333 19.07 3.30 35.74 1.28
472 2222 6.041409 TGAATGGTCAAAGTTTGGCTCAAATA 59.959 34.615 19.07 4.72 35.74 1.40
473 2223 4.961438 ATGGTCAAAGTTTGGCTCAAAT 57.039 36.364 19.07 6.34 35.74 2.32
474 2224 4.161189 TGAATGGTCAAAGTTTGGCTCAAA 59.839 37.500 19.07 4.37 35.12 2.69
475 2225 3.703556 TGAATGGTCAAAGTTTGGCTCAA 59.296 39.130 19.07 6.69 35.12 3.02
476 2226 3.295093 TGAATGGTCAAAGTTTGGCTCA 58.705 40.909 19.07 15.12 35.12 4.26
477 2227 4.525912 ATGAATGGTCAAAGTTTGGCTC 57.474 40.909 19.07 10.06 37.30 4.70
478 2228 5.774690 TCTTATGAATGGTCAAAGTTTGGCT 59.225 36.000 19.07 0.00 37.30 4.75
479 2229 6.024552 TCTTATGAATGGTCAAAGTTTGGC 57.975 37.500 15.47 13.73 37.30 4.52
550 2300 9.448438 ACTATGTCACAAAGATTATTTGTAGCA 57.552 29.630 8.94 10.75 40.30 3.49
562 2312 9.743057 CCAACAAATTTAACTATGTCACAAAGA 57.257 29.630 0.00 0.00 0.00 2.52
563 2313 9.528018 ACCAACAAATTTAACTATGTCACAAAG 57.472 29.630 0.00 0.00 0.00 2.77
564 2314 9.522804 GACCAACAAATTTAACTATGTCACAAA 57.477 29.630 0.00 0.00 0.00 2.83
565 2315 8.687242 TGACCAACAAATTTAACTATGTCACAA 58.313 29.630 0.00 0.00 0.00 3.33
566 2316 8.226819 TGACCAACAAATTTAACTATGTCACA 57.773 30.769 0.00 0.00 0.00 3.58
567 2317 9.522804 TTTGACCAACAAATTTAACTATGTCAC 57.477 29.630 0.00 0.00 42.57 3.67
581 2331 6.865834 ATGGGCTAATATTTGACCAACAAA 57.134 33.333 25.38 5.02 44.13 2.83
582 2332 7.962995 TTATGGGCTAATATTTGACCAACAA 57.037 32.000 25.38 19.10 44.13 2.83
583 2333 7.782168 TCATTATGGGCTAATATTTGACCAACA 59.218 33.333 25.38 16.20 44.13 3.33
584 2334 8.177119 TCATTATGGGCTAATATTTGACCAAC 57.823 34.615 25.38 0.07 44.13 3.77
585 2335 8.224025 TCTCATTATGGGCTAATATTTGACCAA 58.776 33.333 25.38 12.69 44.13 3.67
586 2336 7.754624 TCTCATTATGGGCTAATATTTGACCA 58.245 34.615 24.13 24.13 45.01 4.02
587 2337 7.337942 CCTCTCATTATGGGCTAATATTTGACC 59.662 40.741 14.27 14.27 0.00 4.02
588 2338 7.337942 CCCTCTCATTATGGGCTAATATTTGAC 59.662 40.741 0.77 0.00 33.88 3.18
589 2339 7.405292 CCCTCTCATTATGGGCTAATATTTGA 58.595 38.462 0.77 0.00 33.88 2.69
590 2340 6.604795 CCCCTCTCATTATGGGCTAATATTTG 59.395 42.308 0.00 0.00 39.61 2.32
591 2341 6.735556 CCCCTCTCATTATGGGCTAATATTT 58.264 40.000 0.00 0.00 39.61 1.40
592 2342 6.332976 CCCCTCTCATTATGGGCTAATATT 57.667 41.667 0.00 0.00 39.61 1.28
593 2343 5.983333 CCCCTCTCATTATGGGCTAATAT 57.017 43.478 0.00 0.00 39.61 1.28
600 2350 2.044793 TAGGCCCCTCTCATTATGGG 57.955 55.000 0.00 0.00 41.23 4.00
601 2351 5.779241 TTATTAGGCCCCTCTCATTATGG 57.221 43.478 0.00 0.00 0.00 2.74
602 2352 5.946377 GGTTTATTAGGCCCCTCTCATTATG 59.054 44.000 0.00 0.00 0.00 1.90
603 2353 5.015284 GGGTTTATTAGGCCCCTCTCATTAT 59.985 44.000 0.00 0.00 36.46 1.28
604 2354 4.352893 GGGTTTATTAGGCCCCTCTCATTA 59.647 45.833 0.00 0.00 36.46 1.90
605 2355 3.140332 GGGTTTATTAGGCCCCTCTCATT 59.860 47.826 0.00 0.00 36.46 2.57
606 2356 2.716969 GGGTTTATTAGGCCCCTCTCAT 59.283 50.000 0.00 0.00 36.46 2.90
607 2357 2.132686 GGGTTTATTAGGCCCCTCTCA 58.867 52.381 0.00 0.00 36.46 3.27
608 2358 1.071857 CGGGTTTATTAGGCCCCTCTC 59.928 57.143 0.00 0.00 39.22 3.20
609 2359 1.137697 CGGGTTTATTAGGCCCCTCT 58.862 55.000 0.00 0.00 39.22 3.69
610 2360 0.109913 CCGGGTTTATTAGGCCCCTC 59.890 60.000 0.00 0.00 39.22 4.30
611 2361 0.327770 TCCGGGTTTATTAGGCCCCT 60.328 55.000 0.00 0.00 39.22 4.79
612 2362 0.179009 GTCCGGGTTTATTAGGCCCC 60.179 60.000 0.00 0.00 39.22 5.80
613 2363 0.533531 CGTCCGGGTTTATTAGGCCC 60.534 60.000 0.00 0.00 39.03 5.80
614 2364 0.533531 CCGTCCGGGTTTATTAGGCC 60.534 60.000 0.00 0.00 0.00 5.19
615 2365 0.465287 TCCGTCCGGGTTTATTAGGC 59.535 55.000 0.00 0.00 37.00 3.93
616 2366 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
617 2367 1.758862 ACCTCCGTCCGGGTTTATTAG 59.241 52.381 0.00 0.00 37.00 1.73
618 2368 1.864669 ACCTCCGTCCGGGTTTATTA 58.135 50.000 0.00 0.00 37.00 0.98
619 2369 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
620 2370 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
621 2371 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
622 2372 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
623 2373 0.394899 CTACTACCTCCGTCCGGGTT 60.395 60.000 0.00 0.00 37.07 4.11
624 2374 1.225704 CTACTACCTCCGTCCGGGT 59.774 63.158 0.00 0.00 39.40 5.28
625 2375 2.192187 GCTACTACCTCCGTCCGGG 61.192 68.421 0.00 0.00 35.59 5.73
626 2376 0.822532 ATGCTACTACCTCCGTCCGG 60.823 60.000 0.00 0.00 0.00 5.14
627 2377 1.888215 TATGCTACTACCTCCGTCCG 58.112 55.000 0.00 0.00 0.00 4.79
628 2378 6.527057 AATAATATGCTACTACCTCCGTCC 57.473 41.667 0.00 0.00 0.00 4.79
629 2379 9.351570 GTAAAATAATATGCTACTACCTCCGTC 57.648 37.037 0.00 0.00 0.00 4.79
630 2380 8.863086 TGTAAAATAATATGCTACTACCTCCGT 58.137 33.333 0.00 0.00 0.00 4.69
631 2381 9.871238 ATGTAAAATAATATGCTACTACCTCCG 57.129 33.333 0.00 0.00 0.00 4.63
656 2406 6.259167 GCAATCACAACATGGCAATTATTCAT 59.741 34.615 0.00 0.00 0.00 2.57
660 2416 4.114073 CGCAATCACAACATGGCAATTAT 58.886 39.130 0.00 0.00 0.00 1.28
681 2437 8.565416 AGAAAATAAAGTTTTACAAGAGACCCG 58.435 33.333 0.00 0.00 0.00 5.28
741 2497 5.690865 AGAATGGCCCGTCTATTAATTGAA 58.309 37.500 0.00 0.00 0.00 2.69
785 2541 6.978659 GGAGGTTTACTGAAAAGGTTTTTGAG 59.021 38.462 0.27 0.27 0.00 3.02
786 2542 6.127281 GGGAGGTTTACTGAAAAGGTTTTTGA 60.127 38.462 0.00 0.00 0.00 2.69
787 2543 6.046593 GGGAGGTTTACTGAAAAGGTTTTTG 58.953 40.000 0.00 0.00 0.00 2.44
788 2544 5.129815 GGGGAGGTTTACTGAAAAGGTTTTT 59.870 40.000 0.00 0.00 0.00 1.94
826 2587 2.485122 GTCCGCCGAATTTGCCTG 59.515 61.111 0.00 0.00 0.00 4.85
1137 2898 3.090219 GCCGGATTGGTAGAGCGGT 62.090 63.158 5.05 0.00 41.21 5.68
1144 2905 3.804329 GCCCAGGCCGGATTGGTA 61.804 66.667 19.61 0.00 41.21 3.25
1252 3013 2.757917 GACCAGGAGAGGAGCGCT 60.758 66.667 11.27 11.27 0.00 5.92
1389 3150 0.900182 AGACATGTCCTGGAGCGTGA 60.900 55.000 22.21 0.00 0.00 4.35
1466 3227 2.768503 TTCGTTTCGATCCCGGCGTT 62.769 55.000 6.01 0.00 35.23 4.84
1515 3276 0.475906 AGGGAGCATTCCATACTGCC 59.524 55.000 0.00 0.00 45.98 4.85
1519 3280 2.621763 CGCAGGGAGCATTCCATAC 58.378 57.895 0.00 0.00 45.98 2.39
1702 3463 2.416747 CTCGCCTCAATCAACTTCACA 58.583 47.619 0.00 0.00 0.00 3.58
1748 3509 7.772166 TCGATCAAGACATTATAGAACACAGT 58.228 34.615 0.00 0.00 0.00 3.55
1831 3592 3.962718 CAGTTGGCAATATCCCCTTCATT 59.037 43.478 1.92 0.00 0.00 2.57
2182 3943 3.129813 TGCAGAAGCCATGAATCAATGAC 59.870 43.478 0.00 0.00 41.13 3.06
2524 4285 1.270826 CTTGCCTCGTCAAGACTCTCA 59.729 52.381 8.41 0.00 44.61 3.27
2873 4634 2.229792 TGGACCTTCAAGTTGCATGTC 58.770 47.619 0.00 0.03 0.00 3.06
2892 4653 7.723616 TGGTATAAGTTATCACATTGGGGAATG 59.276 37.037 0.00 0.00 36.29 2.67
2974 4735 7.030768 CACAATGATTAATCAGCATGTGTTCA 58.969 34.615 30.45 10.08 40.74 3.18
3048 4809 4.682787 TGAACTGACGATACAAGCCATAG 58.317 43.478 0.00 0.00 0.00 2.23
3209 4970 9.313323 CTTATTTAATATGTCCAATGCGTTACG 57.687 33.333 0.00 0.00 0.00 3.18
3227 4988 7.954666 AGCCTTTGTTAGCCATCTTATTTAA 57.045 32.000 0.00 0.00 0.00 1.52
3388 5149 8.454106 ACTGACTTTGCTACATATTGATCAAAC 58.546 33.333 13.09 0.00 0.00 2.93
3512 5273 1.213537 CCCTCATTTGCAAGTGCCG 59.786 57.895 16.52 9.91 41.18 5.69
3541 5302 5.126869 TCACTTGCTGAGGTTGAAAATCAAA 59.873 36.000 0.00 0.00 38.22 2.69
3542 5303 4.644234 TCACTTGCTGAGGTTGAAAATCAA 59.356 37.500 0.00 0.00 33.32 2.57
3543 5304 4.206375 TCACTTGCTGAGGTTGAAAATCA 58.794 39.130 0.00 0.00 0.00 2.57
3544 5305 4.836125 TCACTTGCTGAGGTTGAAAATC 57.164 40.909 0.00 0.00 0.00 2.17
3545 5306 4.889409 TCTTCACTTGCTGAGGTTGAAAAT 59.111 37.500 0.00 0.00 0.00 1.82
3546 5307 4.096382 GTCTTCACTTGCTGAGGTTGAAAA 59.904 41.667 0.00 0.00 0.00 2.29
3547 5308 3.627577 GTCTTCACTTGCTGAGGTTGAAA 59.372 43.478 0.00 0.00 0.00 2.69
3548 5309 3.206150 GTCTTCACTTGCTGAGGTTGAA 58.794 45.455 0.00 0.00 0.00 2.69
3549 5310 2.485479 GGTCTTCACTTGCTGAGGTTGA 60.485 50.000 0.00 0.00 0.00 3.18
3550 5311 1.876156 GGTCTTCACTTGCTGAGGTTG 59.124 52.381 0.00 0.00 0.00 3.77
3551 5312 1.490490 TGGTCTTCACTTGCTGAGGTT 59.510 47.619 0.00 0.00 0.00 3.50
3552 5313 1.131638 TGGTCTTCACTTGCTGAGGT 58.868 50.000 0.00 0.00 0.00 3.85
3553 5314 2.149578 CTTGGTCTTCACTTGCTGAGG 58.850 52.381 0.00 0.00 0.00 3.86
3554 5315 3.065655 CTCTTGGTCTTCACTTGCTGAG 58.934 50.000 0.00 0.00 0.00 3.35
3570 5331 8.786826 TGGTATTACAAACCATTCTACTCTTG 57.213 34.615 0.00 0.00 42.10 3.02
3696 5457 7.126421 AGGAGAATCAAGCAAAGGTCTATTCTA 59.874 37.037 0.00 0.00 36.25 2.10
3707 5468 3.819368 TGTCACAGGAGAATCAAGCAAA 58.181 40.909 0.00 0.00 36.25 3.68
3821 5583 9.809096 TTTAGCAAATTAACAATGTGTTCTGAA 57.191 25.926 0.00 0.00 40.22 3.02
3894 5656 2.029649 CCTGACCTGACCAAAATGCAAG 60.030 50.000 0.00 0.00 0.00 4.01
3946 5708 4.295905 AAGGACATCCACTCCCCTAATA 57.704 45.455 0.00 0.00 38.89 0.98
3948 5710 2.661176 AAGGACATCCACTCCCCTAA 57.339 50.000 0.00 0.00 38.89 2.69
3949 5711 5.427857 TTATAAGGACATCCACTCCCCTA 57.572 43.478 0.00 0.00 38.89 3.53
4018 5782 9.770503 CAGAAAATTAAAGTCACATCAGATGAG 57.229 33.333 17.81 9.50 0.00 2.90
4019 5783 8.733458 CCAGAAAATTAAAGTCACATCAGATGA 58.267 33.333 17.81 0.00 0.00 2.92
4164 5928 3.037549 AGTTCCATAGAGCTCCTTCCAG 58.962 50.000 10.93 0.00 0.00 3.86
4205 5969 3.085533 TGTTTGTGGCTTTGTACACACT 58.914 40.909 13.56 0.00 46.25 3.55
4230 5994 0.535102 ATATGGCCGCTGTTACTGCC 60.535 55.000 8.57 4.09 44.27 4.85
4322 6086 7.707624 AAAATATTGCTTTCATCAGTCTCCA 57.292 32.000 0.00 0.00 0.00 3.86
4433 6198 1.271926 ACACCTGATACCCTTGCAACC 60.272 52.381 0.00 0.00 0.00 3.77
4498 6270 3.751698 AGTACCAATCAGAACTTTTCGGC 59.248 43.478 0.00 0.00 34.02 5.54
4558 6330 6.518200 GCCACAAATCCTTGAAATGAACCTAA 60.518 38.462 0.00 0.00 36.33 2.69
4581 6356 3.185246 TGCTCTATGCTCTAAAGTGCC 57.815 47.619 1.90 0.00 43.37 5.01
4593 6368 3.195610 TCCGGCCATTACTATGCTCTATG 59.804 47.826 2.24 0.00 0.00 2.23
4594 6369 3.441101 TCCGGCCATTACTATGCTCTAT 58.559 45.455 2.24 0.00 0.00 1.98
4641 6416 5.940192 ACAGCATTCGAAAGTCATTAACA 57.060 34.783 0.00 0.00 0.00 2.41
4648 6423 4.627467 AGTGATGTACAGCATTCGAAAGTC 59.373 41.667 18.04 0.65 38.06 3.01
4649 6424 4.569943 AGTGATGTACAGCATTCGAAAGT 58.430 39.130 18.04 1.50 38.06 2.66
4650 6425 5.276584 GCTAGTGATGTACAGCATTCGAAAG 60.277 44.000 18.04 8.29 38.06 2.62
4651 6426 4.566759 GCTAGTGATGTACAGCATTCGAAA 59.433 41.667 18.04 0.00 38.06 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.