Multiple sequence alignment - TraesCS5B01G135300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G135300 chr5B 100.000 4990 0 0 1 4990 254941591 254946580 0.000000e+00 9215.0
1 TraesCS5B01G135300 chr5D 90.700 2129 100 40 2897 4990 243314985 243312920 0.000000e+00 2745.0
2 TraesCS5B01G135300 chr5D 92.321 1120 45 15 681 1766 243317180 243316068 0.000000e+00 1554.0
3 TraesCS5B01G135300 chr5D 89.359 686 62 6 1761 2444 243316046 243315370 0.000000e+00 852.0
4 TraesCS5B01G135300 chr5D 92.982 57 4 0 2749 2805 243315038 243314982 3.200000e-12 84.2
5 TraesCS5B01G135300 chr5A 93.564 1010 52 9 3580 4580 307709805 307710810 0.000000e+00 1493.0
6 TraesCS5B01G135300 chr5A 93.079 968 57 6 642 1604 307704307 307705269 0.000000e+00 1408.0
7 TraesCS5B01G135300 chr5A 93.062 418 15 3 4575 4990 307710888 307711293 2.570000e-167 599.0
8 TraesCS5B01G135300 chr5A 86.261 575 40 18 2182 2726 307708747 307709312 5.560000e-164 588.0
9 TraesCS5B01G135300 chr5A 90.769 260 16 6 3126 3381 307709542 307709797 1.720000e-89 340.0
10 TraesCS5B01G135300 chr5A 76.818 440 79 15 4515 4947 588381040 588380617 5.030000e-55 226.0
11 TraesCS5B01G135300 chr5A 90.411 146 11 2 2897 3040 307709362 307709506 6.590000e-44 189.0
12 TraesCS5B01G135300 chr5A 94.382 89 3 1 1674 1760 307705294 307705382 8.710000e-28 135.0
13 TraesCS5B01G135300 chr5A 94.737 57 3 0 2749 2805 307709309 307709365 6.880000e-14 89.8
14 TraesCS5B01G135300 chr6D 88.653 802 79 9 89 884 431450562 431451357 0.000000e+00 966.0
15 TraesCS5B01G135300 chr6D 87.821 780 90 4 96 870 6831295 6830516 0.000000e+00 909.0
16 TraesCS5B01G135300 chr6D 86.984 799 91 8 94 884 311898549 311897756 0.000000e+00 887.0
17 TraesCS5B01G135300 chr6D 96.154 104 4 0 2802 2905 73831491 73831594 2.390000e-38 171.0
18 TraesCS5B01G135300 chr6D 83.626 171 25 3 4777 4946 297465885 297465717 1.860000e-34 158.0
19 TraesCS5B01G135300 chr6D 82.828 99 16 1 4580 4678 78348879 78348782 2.470000e-13 87.9
20 TraesCS5B01G135300 chr3D 86.198 797 101 8 94 884 400749807 400750600 0.000000e+00 854.0
21 TraesCS5B01G135300 chr3D 76.039 409 67 19 4554 4947 305319212 305319604 3.070000e-42 183.0
22 TraesCS5B01G135300 chr3D 80.603 232 37 7 4527 4756 587051368 587051593 6.640000e-39 172.0
23 TraesCS5B01G135300 chr2D 86.090 798 105 5 94 885 110022680 110021883 0.000000e+00 854.0
24 TraesCS5B01G135300 chr2D 86.052 803 101 8 94 886 577613981 577614782 0.000000e+00 852.0
25 TraesCS5B01G135300 chr2D 77.855 289 45 13 4548 4830 336734774 336734499 1.440000e-35 161.0
26 TraesCS5B01G135300 chr7D 86.160 802 96 12 94 887 135439851 135440645 0.000000e+00 852.0
27 TraesCS5B01G135300 chr3B 86.017 801 103 8 95 887 421228362 421227563 0.000000e+00 850.0
28 TraesCS5B01G135300 chr3B 91.870 123 9 1 2802 2923 738697172 738697294 2.390000e-38 171.0
29 TraesCS5B01G135300 chr3B 74.661 442 75 27 4513 4947 723669624 723670035 1.440000e-35 161.0
30 TraesCS5B01G135300 chr1B 86.164 795 100 9 98 884 685178283 685177491 0.000000e+00 850.0
31 TraesCS5B01G135300 chr7A 78.000 400 68 18 4554 4946 507170605 507170219 3.000000e-57 233.0
32 TraesCS5B01G135300 chr7A 95.327 107 5 0 2792 2898 164447451 164447345 2.390000e-38 171.0
33 TraesCS5B01G135300 chr7A 95.283 106 5 0 2797 2902 203965830 203965935 8.590000e-38 169.0
34 TraesCS5B01G135300 chr4B 76.484 455 69 26 4513 4947 172764658 172765094 3.910000e-51 213.0
35 TraesCS5B01G135300 chr1D 77.778 342 52 18 4617 4947 453267123 453267451 6.590000e-44 189.0
36 TraesCS5B01G135300 chr1D 75.066 381 68 17 4513 4887 485621932 485621573 8.650000e-33 152.0
37 TraesCS5B01G135300 chr6A 98.969 97 1 0 2802 2898 517665450 517665546 1.850000e-39 174.0
38 TraesCS5B01G135300 chr6B 96.190 105 4 0 2794 2898 219879341 219879445 6.640000e-39 172.0
39 TraesCS5B01G135300 chr2A 96.190 105 4 0 2794 2898 416627578 416627474 6.640000e-39 172.0
40 TraesCS5B01G135300 chr1A 96.154 104 4 0 2802 2905 176412955 176413058 2.390000e-38 171.0
41 TraesCS5B01G135300 chr1A 94.595 111 5 1 2799 2909 324495729 324495838 2.390000e-38 171.0
42 TraesCS5B01G135300 chr1A 81.176 85 10 5 4548 4630 23338792 23338712 4.170000e-06 63.9
43 TraesCS5B01G135300 chr7B 74.944 447 66 26 4513 4947 658897496 658897084 4.000000e-36 163.0
44 TraesCS5B01G135300 chr2B 83.704 135 18 3 4814 4947 621671392 621671261 1.890000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G135300 chr5B 254941591 254946580 4989 False 9215.000 9215 100.000000 1 4990 1 chr5B.!!$F1 4989
1 TraesCS5B01G135300 chr5D 243312920 243317180 4260 True 1308.800 2745 91.340500 681 4990 4 chr5D.!!$R1 4309
2 TraesCS5B01G135300 chr5A 307704307 307711293 6986 False 605.225 1493 92.033125 642 4990 8 chr5A.!!$F1 4348
3 TraesCS5B01G135300 chr6D 431450562 431451357 795 False 966.000 966 88.653000 89 884 1 chr6D.!!$F2 795
4 TraesCS5B01G135300 chr6D 6830516 6831295 779 True 909.000 909 87.821000 96 870 1 chr6D.!!$R1 774
5 TraesCS5B01G135300 chr6D 311897756 311898549 793 True 887.000 887 86.984000 94 884 1 chr6D.!!$R4 790
6 TraesCS5B01G135300 chr3D 400749807 400750600 793 False 854.000 854 86.198000 94 884 1 chr3D.!!$F2 790
7 TraesCS5B01G135300 chr2D 110021883 110022680 797 True 854.000 854 86.090000 94 885 1 chr2D.!!$R1 791
8 TraesCS5B01G135300 chr2D 577613981 577614782 801 False 852.000 852 86.052000 94 886 1 chr2D.!!$F1 792
9 TraesCS5B01G135300 chr7D 135439851 135440645 794 False 852.000 852 86.160000 94 887 1 chr7D.!!$F1 793
10 TraesCS5B01G135300 chr3B 421227563 421228362 799 True 850.000 850 86.017000 95 887 1 chr3B.!!$R1 792
11 TraesCS5B01G135300 chr1B 685177491 685178283 792 True 850.000 850 86.164000 98 884 1 chr1B.!!$R1 786

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.033011 ACCTGCGTATCCTCACCTCT 60.033 55.0 0.00 0.0 0.00 3.69 F
1203 1226 0.039618 GACTTCCAGCCCCAATCCAA 59.960 55.0 0.00 0.0 0.00 3.53 F
2818 5874 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.0 0.00 0.0 0.00 3.28 F
3582 6651 0.112995 ATTCTGAGGCCAGGTGCAAA 59.887 50.0 5.01 0.0 43.89 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 2375 0.392706 ATCCGCATACAATCGAGGCA 59.607 50.000 0.00 0.0 0.00 4.75 R
2889 5945 0.253044 TGCATGCCAAGTACTCCCTC 59.747 55.000 16.68 0.0 0.00 4.30 R
3887 6973 1.199327 CGAAGTGAGGTCGCTAGTTCA 59.801 52.381 0.00 0.0 35.32 3.18 R
4510 7596 2.224744 TGGGTGAAGCATGCAACTCTTA 60.225 45.455 21.98 0.0 25.79 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.160822 ATGATGCACGCATAGACTCC 57.839 50.000 4.13 0.00 36.70 3.85
21 22 0.249031 TGATGCACGCATAGACTCCG 60.249 55.000 4.13 0.00 36.70 4.63
22 23 0.249073 GATGCACGCATAGACTCCGT 60.249 55.000 4.13 0.00 36.70 4.69
23 24 0.249073 ATGCACGCATAGACTCCGTC 60.249 55.000 1.86 0.00 34.49 4.79
24 25 1.313091 TGCACGCATAGACTCCGTCT 61.313 55.000 1.82 1.82 45.54 4.18
25 26 0.867753 GCACGCATAGACTCCGTCTG 60.868 60.000 6.77 0.00 43.30 3.51
26 27 0.867753 CACGCATAGACTCCGTCTGC 60.868 60.000 6.77 3.01 43.30 4.26
27 28 1.299468 CGCATAGACTCCGTCTGCC 60.299 63.158 6.77 0.00 43.30 4.85
28 29 1.816537 GCATAGACTCCGTCTGCCA 59.183 57.895 6.77 0.00 43.30 4.92
29 30 0.175760 GCATAGACTCCGTCTGCCAA 59.824 55.000 6.77 0.00 43.30 4.52
30 31 1.804372 GCATAGACTCCGTCTGCCAAG 60.804 57.143 6.77 0.00 43.30 3.61
31 32 1.751351 CATAGACTCCGTCTGCCAAGA 59.249 52.381 6.77 0.00 43.30 3.02
32 33 1.464734 TAGACTCCGTCTGCCAAGAG 58.535 55.000 6.77 0.00 43.30 2.85
33 34 1.446966 GACTCCGTCTGCCAAGAGC 60.447 63.158 0.00 0.00 44.14 4.09
46 47 4.399004 GCCAAGAGCATTAGAGAGAAGA 57.601 45.455 0.00 0.00 42.97 2.87
47 48 4.764172 GCCAAGAGCATTAGAGAGAAGAA 58.236 43.478 0.00 0.00 42.97 2.52
48 49 4.810491 GCCAAGAGCATTAGAGAGAAGAAG 59.190 45.833 0.00 0.00 42.97 2.85
49 50 5.395103 GCCAAGAGCATTAGAGAGAAGAAGA 60.395 44.000 0.00 0.00 42.97 2.87
50 51 6.638610 CCAAGAGCATTAGAGAGAAGAAGAA 58.361 40.000 0.00 0.00 0.00 2.52
51 52 6.534793 CCAAGAGCATTAGAGAGAAGAAGAAC 59.465 42.308 0.00 0.00 0.00 3.01
52 53 5.890334 AGAGCATTAGAGAGAAGAAGAACG 58.110 41.667 0.00 0.00 0.00 3.95
53 54 5.004922 AGCATTAGAGAGAAGAAGAACGG 57.995 43.478 0.00 0.00 0.00 4.44
54 55 4.464597 AGCATTAGAGAGAAGAAGAACGGT 59.535 41.667 0.00 0.00 0.00 4.83
55 56 5.652891 AGCATTAGAGAGAAGAAGAACGGTA 59.347 40.000 0.00 0.00 0.00 4.02
56 57 6.153000 AGCATTAGAGAGAAGAAGAACGGTAA 59.847 38.462 0.00 0.00 0.00 2.85
57 58 6.474102 GCATTAGAGAGAAGAAGAACGGTAAG 59.526 42.308 0.00 0.00 0.00 2.34
58 59 7.628794 GCATTAGAGAGAAGAAGAACGGTAAGA 60.629 40.741 0.00 0.00 0.00 2.10
59 60 7.941431 TTAGAGAGAAGAAGAACGGTAAGAT 57.059 36.000 0.00 0.00 0.00 2.40
60 61 6.202516 AGAGAGAAGAAGAACGGTAAGATG 57.797 41.667 0.00 0.00 0.00 2.90
61 62 5.126384 AGAGAGAAGAAGAACGGTAAGATGG 59.874 44.000 0.00 0.00 0.00 3.51
62 63 3.863041 AGAAGAAGAACGGTAAGATGGC 58.137 45.455 0.00 0.00 0.00 4.40
63 64 3.260884 AGAAGAAGAACGGTAAGATGGCA 59.739 43.478 0.00 0.00 0.00 4.92
64 65 3.252974 AGAAGAACGGTAAGATGGCAG 57.747 47.619 0.00 0.00 0.00 4.85
65 66 2.093447 AGAAGAACGGTAAGATGGCAGG 60.093 50.000 0.00 0.00 0.00 4.85
66 67 0.541863 AGAACGGTAAGATGGCAGGG 59.458 55.000 0.00 0.00 0.00 4.45
67 68 0.539986 GAACGGTAAGATGGCAGGGA 59.460 55.000 0.00 0.00 0.00 4.20
68 69 1.141053 GAACGGTAAGATGGCAGGGAT 59.859 52.381 0.00 0.00 0.00 3.85
69 70 0.469917 ACGGTAAGATGGCAGGGATG 59.530 55.000 0.00 0.00 0.00 3.51
70 71 0.758734 CGGTAAGATGGCAGGGATGA 59.241 55.000 0.00 0.00 0.00 2.92
71 72 1.140852 CGGTAAGATGGCAGGGATGAA 59.859 52.381 0.00 0.00 0.00 2.57
72 73 2.576615 GGTAAGATGGCAGGGATGAAC 58.423 52.381 0.00 0.00 0.00 3.18
73 74 2.576615 GTAAGATGGCAGGGATGAACC 58.423 52.381 0.00 0.00 38.08 3.62
74 75 1.302907 AAGATGGCAGGGATGAACCT 58.697 50.000 0.00 0.00 43.08 3.50
82 83 0.759346 AGGGATGAACCTGCGTATCC 59.241 55.000 0.00 0.00 40.04 2.59
83 84 0.759346 GGGATGAACCTGCGTATCCT 59.241 55.000 0.00 0.00 39.21 3.24
84 85 1.270358 GGGATGAACCTGCGTATCCTC 60.270 57.143 0.00 0.00 39.21 3.71
85 86 1.412710 GGATGAACCTGCGTATCCTCA 59.587 52.381 0.00 0.00 36.88 3.86
86 87 2.474816 GATGAACCTGCGTATCCTCAC 58.525 52.381 0.00 0.00 0.00 3.51
87 88 0.535335 TGAACCTGCGTATCCTCACC 59.465 55.000 0.00 0.00 0.00 4.02
88 89 0.824759 GAACCTGCGTATCCTCACCT 59.175 55.000 0.00 0.00 0.00 4.00
89 90 0.824759 AACCTGCGTATCCTCACCTC 59.175 55.000 0.00 0.00 0.00 3.85
90 91 0.033011 ACCTGCGTATCCTCACCTCT 60.033 55.000 0.00 0.00 0.00 3.69
91 92 0.387202 CCTGCGTATCCTCACCTCTG 59.613 60.000 0.00 0.00 0.00 3.35
92 93 0.249238 CTGCGTATCCTCACCTCTGC 60.249 60.000 0.00 0.00 0.00 4.26
180 183 3.562557 ACGTGTGGATCGTTTTAGCTTTT 59.437 39.130 0.00 0.00 38.38 2.27
233 236 0.249155 TCGTTCGACGTCTTGGCTTT 60.249 50.000 14.70 0.00 43.14 3.51
236 239 0.179067 TTCGACGTCTTGGCTTTGGT 60.179 50.000 14.70 0.00 0.00 3.67
319 322 7.331791 GTCTCTATTGTTGGTAAAGGATCTGT 58.668 38.462 0.00 0.00 0.00 3.41
320 323 7.824779 GTCTCTATTGTTGGTAAAGGATCTGTT 59.175 37.037 0.00 0.00 0.00 3.16
339 342 3.128349 GTTAACCAGTCTGTTCAAGCGA 58.872 45.455 0.00 0.00 0.00 4.93
373 379 0.948623 CGACGGCATTCTTGTGGTGA 60.949 55.000 0.00 0.00 0.00 4.02
376 382 0.110238 CGGCATTCTTGTGGTGAACG 60.110 55.000 0.00 0.00 0.00 3.95
377 383 0.387239 GGCATTCTTGTGGTGAACGC 60.387 55.000 0.00 0.00 32.70 4.84
418 425 1.733041 CGACGACGTGTGCTCCAAT 60.733 57.895 4.58 0.00 34.56 3.16
422 429 1.626654 CGACGTGTGCTCCAATGTCC 61.627 60.000 0.00 0.00 30.62 4.02
424 431 1.667830 CGTGTGCTCCAATGTCCGT 60.668 57.895 0.00 0.00 0.00 4.69
447 454 2.303175 GGAGCTTCAGAGGTAGTCGAT 58.697 52.381 0.00 0.00 32.79 3.59
481 488 2.152699 GTGGTCTGCATCGACGACG 61.153 63.158 0.00 0.00 33.95 5.12
487 494 3.248171 GCATCGACGACGTCTGGC 61.248 66.667 24.36 19.69 40.69 4.85
491 498 1.583495 ATCGACGACGTCTGGCAGAA 61.583 55.000 24.36 0.51 40.69 3.02
499 506 1.446966 GTCTGGCAGAAGGAGCGTC 60.447 63.158 20.62 0.00 0.00 5.19
531 538 1.972075 TGGTTCGTGGATGACAGGTAA 59.028 47.619 0.00 0.00 36.39 2.85
542 549 2.696775 TGACAGGTAAGGTTTCCTCCA 58.303 47.619 0.00 0.00 30.89 3.86
555 562 1.022735 TCCTCCATCGACGTCTTAGC 58.977 55.000 14.70 0.00 0.00 3.09
572 581 0.327480 AGCCATGGGGGTGTCAGATA 60.327 55.000 15.13 0.00 45.05 1.98
575 584 2.057140 CCATGGGGGTGTCAGATATGA 58.943 52.381 2.85 0.00 0.00 2.15
621 631 1.406887 CCCCGGTCTGATTCGTTCAAT 60.407 52.381 0.00 0.00 32.78 2.57
636 646 4.515944 TCGTTCAATGGTAATGGTTTCGTT 59.484 37.500 0.00 0.00 0.00 3.85
666 679 2.362889 CCTTGGAGGCCCGCAAAT 60.363 61.111 0.00 0.00 34.29 2.32
667 680 2.713967 CCTTGGAGGCCCGCAAATG 61.714 63.158 0.00 0.00 34.29 2.32
689 702 1.873903 GCATATCAACGATGGAGCCGT 60.874 52.381 0.00 0.00 42.61 5.68
752 768 1.452108 GACTGCTATGGTGGTGCCC 60.452 63.158 0.00 0.00 36.04 5.36
806 823 1.333619 GACGTTCTGCTGCCTTTTCAA 59.666 47.619 0.00 0.00 0.00 2.69
967 990 4.057428 GCACCAGGCTCGAGTCGT 62.057 66.667 15.13 2.66 40.25 4.34
999 1022 3.672295 CTCTCTCAAGCCCGGTGCC 62.672 68.421 10.82 0.00 42.71 5.01
1203 1226 0.039618 GACTTCCAGCCCCAATCCAA 59.960 55.000 0.00 0.00 0.00 3.53
1230 1253 2.442087 CGCCCCCTTTCCCATTCC 60.442 66.667 0.00 0.00 0.00 3.01
1244 1267 1.764054 ATTCCCAGGAGGCTCTCGG 60.764 63.158 15.23 14.36 34.51 4.63
1573 1596 0.314935 ATGTTCCTTGCGTTGCTTGG 59.685 50.000 0.00 0.00 0.00 3.61
1577 1600 0.383949 TCCTTGCGTTGCTTGGTTTC 59.616 50.000 0.00 0.00 0.00 2.78
1591 1616 9.129209 GTTGCTTGGTTTCTAATTCTGTTAATC 57.871 33.333 0.00 0.00 0.00 1.75
1615 1640 6.705825 TCATGCTATGTATACCATGTGTCAAC 59.294 38.462 15.25 0.00 37.09 3.18
1618 1643 6.127196 TGCTATGTATACCATGTGTCAACTGA 60.127 38.462 0.00 0.00 34.86 3.41
1619 1644 6.761242 GCTATGTATACCATGTGTCAACTGAA 59.239 38.462 0.00 0.00 34.86 3.02
1620 1645 6.985188 ATGTATACCATGTGTCAACTGAAC 57.015 37.500 0.00 0.00 30.69 3.18
1621 1646 6.109156 TGTATACCATGTGTCAACTGAACT 57.891 37.500 0.00 0.00 0.00 3.01
1622 1647 6.530120 TGTATACCATGTGTCAACTGAACTT 58.470 36.000 0.00 0.00 0.00 2.66
1623 1648 6.649141 TGTATACCATGTGTCAACTGAACTTC 59.351 38.462 0.00 0.00 0.00 3.01
1624 1649 4.156455 ACCATGTGTCAACTGAACTTCT 57.844 40.909 0.00 0.00 0.00 2.85
1625 1650 3.879295 ACCATGTGTCAACTGAACTTCTG 59.121 43.478 0.00 0.00 0.00 3.02
1653 1693 4.270008 ACTGATACATTGGGGTTTACTGC 58.730 43.478 0.00 0.00 0.00 4.40
1668 1708 1.958288 ACTGCATGGAACTAGGGAGT 58.042 50.000 0.00 0.00 37.59 3.85
1684 1738 2.742589 GGGAGTTAAGAAAGCAGGAACG 59.257 50.000 0.00 0.00 0.00 3.95
1729 1785 1.441729 CGCGGCCTGAAATCCTAGA 59.558 57.895 0.00 0.00 0.00 2.43
1774 1857 6.519382 CACAAGGATGCTGATAGAGTGATAA 58.481 40.000 0.00 0.00 0.00 1.75
1782 1865 5.221722 TGCTGATAGAGTGATAATGGAACCC 60.222 44.000 0.00 0.00 0.00 4.11
1788 1871 1.134220 GTGATAATGGAACCCGGCTGA 60.134 52.381 0.00 0.00 0.00 4.26
1790 1873 2.224523 TGATAATGGAACCCGGCTGATC 60.225 50.000 0.00 0.00 0.00 2.92
1797 1880 1.274703 AACCCGGCTGATCTGGTCAT 61.275 55.000 0.00 0.00 39.73 3.06
1833 2299 8.961294 AAAACATGAATTTGACAGGAATGAAA 57.039 26.923 0.00 0.00 0.00 2.69
1870 2336 6.127281 GGACTTCTTTAACAAACCCCAAGAAA 60.127 38.462 0.00 0.00 0.00 2.52
1885 2351 7.418378 ACCCCAAGAAAGGTGAATGAATTATA 58.582 34.615 0.00 0.00 34.20 0.98
1915 2381 4.963276 TGAACATAGGAAAATTGCCTCG 57.037 40.909 0.00 0.00 36.96 4.63
1918 2384 5.652014 TGAACATAGGAAAATTGCCTCGATT 59.348 36.000 0.00 0.00 36.96 3.34
1919 2385 5.505173 ACATAGGAAAATTGCCTCGATTG 57.495 39.130 0.00 0.00 36.96 2.67
1922 2388 6.772716 ACATAGGAAAATTGCCTCGATTGTAT 59.227 34.615 0.00 0.00 36.96 2.29
1926 2392 1.229428 ATTGCCTCGATTGTATGCGG 58.771 50.000 0.00 0.00 0.00 5.69
1936 2402 4.269123 TCGATTGTATGCGGATGTGTTTAC 59.731 41.667 0.00 0.00 0.00 2.01
1940 2406 5.888691 TGTATGCGGATGTGTTTACAAAT 57.111 34.783 0.00 0.00 40.84 2.32
1942 2408 7.379098 TGTATGCGGATGTGTTTACAAATAA 57.621 32.000 0.00 0.00 40.84 1.40
1944 2410 5.303747 TGCGGATGTGTTTACAAATAAGG 57.696 39.130 0.00 0.00 40.84 2.69
1972 2439 4.485163 GTGAATTTTGAAATCCGGTGGAG 58.515 43.478 0.00 0.00 34.05 3.86
1990 2457 2.105477 GGAGCTGGAGCATAGGAAATCA 59.895 50.000 0.00 0.00 45.16 2.57
1995 2462 4.722220 CTGGAGCATAGGAAATCAATCCA 58.278 43.478 0.00 0.00 42.27 3.41
2004 2471 8.810041 GCATAGGAAATCAATCCATAGGAATTT 58.190 33.333 0.00 0.00 42.27 1.82
2020 2487 1.039856 ATTTGGCAGCACCGTTTCTT 58.960 45.000 0.00 0.00 43.94 2.52
2064 2531 7.617041 ACAGAAAATTTCCTAAGAATCGGAG 57.383 36.000 1.57 0.00 0.00 4.63
2121 2593 5.200454 CGACCGCAGAATTTCTCATAAATG 58.800 41.667 0.00 0.00 0.00 2.32
2139 2611 2.151502 TGATCTGGGGAGAGTCTGTC 57.848 55.000 0.00 0.00 0.00 3.51
2160 2632 6.522054 TGTCTCTACGTTCTTTGGAATTTCT 58.478 36.000 0.00 0.00 33.71 2.52
2161 2633 6.990349 TGTCTCTACGTTCTTTGGAATTTCTT 59.010 34.615 0.00 0.00 33.71 2.52
2230 5231 2.357009 CACCTCTGCCATTGATAACTGC 59.643 50.000 0.00 0.00 0.00 4.40
2287 5288 2.841442 AACTGCTGGTGGTCTTACTC 57.159 50.000 0.00 0.00 0.00 2.59
2296 5297 5.223449 TGGTGGTCTTACTCTTAAACCTG 57.777 43.478 0.00 0.00 0.00 4.00
2318 5319 9.259832 ACCTGAAATTATTTAAGAGGAAATGCT 57.740 29.630 13.56 0.00 31.51 3.79
2329 5330 5.091261 AGAGGAAATGCTAGTACCACTTG 57.909 43.478 0.00 0.00 0.00 3.16
2336 5337 1.201647 GCTAGTACCACTTGCAGTCGA 59.798 52.381 7.68 0.00 44.40 4.20
2348 5349 5.006165 CACTTGCAGTCGATTAGATTCCTTC 59.994 44.000 0.00 0.00 0.00 3.46
2355 5356 8.247562 GCAGTCGATTAGATTCCTTCTGTATAT 58.752 37.037 0.00 0.00 35.79 0.86
2360 5361 9.522804 CGATTAGATTCCTTCTGTATATAAGGC 57.477 37.037 0.00 0.00 41.76 4.35
2361 5362 9.522804 GATTAGATTCCTTCTGTATATAAGGCG 57.477 37.037 0.00 0.00 41.76 5.52
2362 5363 8.645814 TTAGATTCCTTCTGTATATAAGGCGA 57.354 34.615 0.00 0.00 41.76 5.54
2363 5364 6.926313 AGATTCCTTCTGTATATAAGGCGAC 58.074 40.000 0.00 0.00 41.76 5.19
2365 5366 7.233757 AGATTCCTTCTGTATATAAGGCGACTT 59.766 37.037 9.39 9.39 43.40 3.01
2396 5398 3.071312 TCGGTTGTTGCCCTAACTCTTTA 59.929 43.478 0.00 0.00 40.05 1.85
2407 5409 4.363999 CCTAACTCTTTAGATGACTGCCG 58.636 47.826 0.00 0.00 37.49 5.69
2408 5410 2.301577 ACTCTTTAGATGACTGCCGC 57.698 50.000 0.00 0.00 0.00 6.53
2416 5418 7.217200 TCTTTAGATGACTGCCGCTATTTTAT 58.783 34.615 0.00 0.00 0.00 1.40
2481 5536 8.021898 TGAAATTTTGGTGAGATCCTTCTTTT 57.978 30.769 0.00 0.00 30.30 2.27
2491 5546 8.193438 GGTGAGATCCTTCTTTTCCAATAAATG 58.807 37.037 0.00 0.00 30.30 2.32
2499 5554 5.956642 TCTTTTCCAATAAATGTTACGGCC 58.043 37.500 0.00 0.00 0.00 6.13
2512 5567 5.261209 TGTTACGGCCGTATACTTTATGT 57.739 39.130 36.67 10.38 0.00 2.29
2518 5573 4.384846 CGGCCGTATACTTTATGTGATCAC 59.615 45.833 19.50 19.27 0.00 3.06
2536 5591 1.370810 CCCCTTTGTGGCGCATTTT 59.629 52.632 10.83 0.00 0.00 1.82
2613 5669 8.134895 CAGAGTAGATCTATCTGAAAGGTGTTC 58.865 40.741 23.84 3.75 42.48 3.18
2674 5730 2.462456 TTCTCAAGATTGCTGCTCGT 57.538 45.000 0.00 0.00 0.00 4.18
2700 5756 6.665465 GGTGTAATACCGAATTAAAGCATCC 58.335 40.000 5.48 0.00 40.26 3.51
2701 5757 6.360329 GTGTAATACCGAATTAAAGCATCCG 58.640 40.000 0.00 0.00 31.82 4.18
2706 5762 3.945285 ACCGAATTAAAGCATCCGATGTT 59.055 39.130 10.10 0.77 0.00 2.71
2726 5782 9.046296 CGATGTTGCCTTTAGTTAATAGAGAAT 57.954 33.333 0.00 0.00 0.00 2.40
2729 5785 8.956426 TGTTGCCTTTAGTTAATAGAGAATTGG 58.044 33.333 0.00 0.00 0.00 3.16
2730 5786 9.174166 GTTGCCTTTAGTTAATAGAGAATTGGA 57.826 33.333 0.00 0.00 0.00 3.53
2731 5787 9.747898 TTGCCTTTAGTTAATAGAGAATTGGAA 57.252 29.630 0.00 0.00 0.00 3.53
2732 5788 9.174166 TGCCTTTAGTTAATAGAGAATTGGAAC 57.826 33.333 0.00 0.00 0.00 3.62
2733 5789 8.622157 GCCTTTAGTTAATAGAGAATTGGAACC 58.378 37.037 0.00 0.00 0.00 3.62
2734 5790 9.681062 CCTTTAGTTAATAGAGAATTGGAACCA 57.319 33.333 0.00 0.00 0.00 3.67
2737 5793 9.681062 TTAGTTAATAGAGAATTGGAACCAAGG 57.319 33.333 11.88 0.00 39.47 3.61
2738 5794 7.699878 AGTTAATAGAGAATTGGAACCAAGGT 58.300 34.615 11.88 2.79 39.47 3.50
2739 5795 8.170730 AGTTAATAGAGAATTGGAACCAAGGTT 58.829 33.333 11.88 3.73 39.47 3.50
2740 5796 8.803235 GTTAATAGAGAATTGGAACCAAGGTTT 58.197 33.333 11.88 2.01 39.47 3.27
2741 5797 7.855784 AATAGAGAATTGGAACCAAGGTTTT 57.144 32.000 11.88 1.67 39.47 2.43
2742 5798 8.950007 AATAGAGAATTGGAACCAAGGTTTTA 57.050 30.769 11.88 0.00 39.47 1.52
2743 5799 8.950007 ATAGAGAATTGGAACCAAGGTTTTAA 57.050 30.769 11.88 5.30 39.47 1.52
2744 5800 7.050970 AGAGAATTGGAACCAAGGTTTTAAC 57.949 36.000 11.88 0.00 39.47 2.01
2745 5801 6.609616 AGAGAATTGGAACCAAGGTTTTAACA 59.390 34.615 11.88 1.38 39.47 2.41
2746 5802 7.290014 AGAGAATTGGAACCAAGGTTTTAACAT 59.710 33.333 11.88 0.00 39.47 2.71
2747 5803 7.441836 AGAATTGGAACCAAGGTTTTAACATC 58.558 34.615 11.88 7.12 39.47 3.06
2748 5804 6.739331 ATTGGAACCAAGGTTTTAACATCA 57.261 33.333 11.88 0.00 39.47 3.07
2749 5805 5.782893 TGGAACCAAGGTTTTAACATCAG 57.217 39.130 5.87 0.00 38.60 2.90
2750 5806 5.450453 TGGAACCAAGGTTTTAACATCAGA 58.550 37.500 5.87 0.00 38.60 3.27
2751 5807 5.894393 TGGAACCAAGGTTTTAACATCAGAA 59.106 36.000 5.87 0.00 38.60 3.02
2752 5808 6.040391 TGGAACCAAGGTTTTAACATCAGAAG 59.960 38.462 5.87 0.00 38.60 2.85
2753 5809 6.040504 GGAACCAAGGTTTTAACATCAGAAGT 59.959 38.462 5.87 0.00 38.60 3.01
2754 5810 7.417456 GGAACCAAGGTTTTAACATCAGAAGTT 60.417 37.037 5.87 0.00 38.60 2.66
2755 5811 8.528044 AACCAAGGTTTTAACATCAGAAGTTA 57.472 30.769 0.00 0.00 34.22 2.24
2756 5812 8.528044 ACCAAGGTTTTAACATCAGAAGTTAA 57.472 30.769 6.85 6.85 39.07 2.01
2766 5822 6.228273 ACATCAGAAGTTAACGTGAATGTG 57.772 37.500 10.98 8.43 0.00 3.21
2805 5861 3.181474 GCCCCAAGTCATGTCTACTACTC 60.181 52.174 0.00 0.00 0.00 2.59
2806 5862 3.385111 CCCCAAGTCATGTCTACTACTCC 59.615 52.174 0.00 0.00 0.00 3.85
2807 5863 3.385111 CCCAAGTCATGTCTACTACTCCC 59.615 52.174 0.00 0.00 0.00 4.30
2808 5864 4.282496 CCAAGTCATGTCTACTACTCCCT 58.718 47.826 0.00 0.00 0.00 4.20
2809 5865 4.339814 CCAAGTCATGTCTACTACTCCCTC 59.660 50.000 0.00 0.00 0.00 4.30
2810 5866 4.173290 AGTCATGTCTACTACTCCCTCC 57.827 50.000 0.00 0.00 0.00 4.30
2811 5867 2.879646 GTCATGTCTACTACTCCCTCCG 59.120 54.545 0.00 0.00 0.00 4.63
2812 5868 2.508716 TCATGTCTACTACTCCCTCCGT 59.491 50.000 0.00 0.00 0.00 4.69
2813 5869 2.706339 TGTCTACTACTCCCTCCGTC 57.294 55.000 0.00 0.00 0.00 4.79
2814 5870 1.211457 TGTCTACTACTCCCTCCGTCC 59.789 57.143 0.00 0.00 0.00 4.79
2815 5871 0.842635 TCTACTACTCCCTCCGTCCC 59.157 60.000 0.00 0.00 0.00 4.46
2816 5872 0.549950 CTACTACTCCCTCCGTCCCA 59.450 60.000 0.00 0.00 0.00 4.37
2817 5873 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2818 5874 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2819 5875 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
2820 5876 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
2821 5877 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2822 5878 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2823 5879 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2824 5880 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2825 5881 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2826 5882 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2827 5883 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2828 5884 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2829 5885 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2830 5886 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2831 5887 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2832 5888 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2833 5889 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2834 5890 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2835 5891 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2836 5892 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2837 5893 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2838 5894 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2839 5895 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2840 5896 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2846 5902 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2847 5903 9.880157 AAGTGACTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
2848 5904 9.530633 AGTGACTCAACTTTGTACTAACTTTAG 57.469 33.333 0.00 0.00 36.82 1.85
2849 5905 9.310716 GTGACTCAACTTTGTACTAACTTTAGT 57.689 33.333 6.85 6.85 45.39 2.24
2873 5929 9.310716 AGTACAAAGTTAGTACAAAGTTGAGTC 57.689 33.333 6.30 0.00 43.24 3.36
2874 5930 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
2875 5931 7.971455 ACAAAGTTAGTACAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
2876 5932 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
2877 5933 8.665685 CAAAGTTAGTACAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 38.74 3.16
2878 5934 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2884 5940 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2885 5941 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2886 5942 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2887 5943 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2888 5944 5.690865 AGTTGAGTCACTTATTTTGGGACA 58.309 37.500 0.00 0.00 0.00 4.02
2889 5945 5.765182 AGTTGAGTCACTTATTTTGGGACAG 59.235 40.000 0.00 0.00 42.39 3.51
2890 5946 5.560722 TGAGTCACTTATTTTGGGACAGA 57.439 39.130 0.00 0.00 42.39 3.41
2891 5947 5.551233 TGAGTCACTTATTTTGGGACAGAG 58.449 41.667 0.00 0.00 42.39 3.35
2892 5948 4.911390 AGTCACTTATTTTGGGACAGAGG 58.089 43.478 0.00 0.00 42.39 3.69
2893 5949 4.010349 GTCACTTATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
2894 5950 3.913799 TCACTTATTTTGGGACAGAGGGA 59.086 43.478 0.00 0.00 42.39 4.20
2895 5951 4.019321 TCACTTATTTTGGGACAGAGGGAG 60.019 45.833 0.00 0.00 42.39 4.30
2896 5952 3.916989 ACTTATTTTGGGACAGAGGGAGT 59.083 43.478 0.00 0.00 42.39 3.85
2897 5953 5.045869 CACTTATTTTGGGACAGAGGGAGTA 60.046 44.000 0.00 0.00 42.39 2.59
2898 5954 5.045797 ACTTATTTTGGGACAGAGGGAGTAC 60.046 44.000 0.00 0.00 42.39 2.73
2899 5955 2.715763 TTTGGGACAGAGGGAGTACT 57.284 50.000 0.00 0.00 42.39 2.73
2908 5964 0.253044 GAGGGAGTACTTGGCATGCA 59.747 55.000 21.36 2.54 0.00 3.96
2913 5969 2.095059 GGAGTACTTGGCATGCAACTTG 60.095 50.000 21.36 6.93 0.00 3.16
2931 5987 2.584835 TGTGCTAGCAATTGGAACCT 57.415 45.000 21.29 0.00 0.00 3.50
2938 5994 3.073274 AGCAATTGGAACCTGTACCTC 57.927 47.619 7.72 0.00 0.00 3.85
2940 5996 3.074538 AGCAATTGGAACCTGTACCTCTT 59.925 43.478 7.72 0.00 0.00 2.85
2941 5997 3.826729 GCAATTGGAACCTGTACCTCTTT 59.173 43.478 7.72 0.00 0.00 2.52
2968 6024 4.508551 TGTGAAGTTGGGCATGAGATAT 57.491 40.909 0.00 0.00 0.00 1.63
2993 6049 7.681939 AGCAAGAGGTTTTGTCGATTATTAA 57.318 32.000 0.00 0.00 0.00 1.40
3025 6083 4.345547 GGGACAAAGGGTAATGGTTTTGAA 59.654 41.667 3.15 0.00 35.21 2.69
3030 6088 8.257602 ACAAAGGGTAATGGTTTTGAAAGTAT 57.742 30.769 3.15 0.00 35.21 2.12
3066 6125 1.009675 GCGTTGACTGCAAGGTGTG 60.010 57.895 0.00 0.00 40.89 3.82
3092 6151 6.582295 CAGTTAAACATCACTTTTTCGGGATG 59.418 38.462 1.76 1.76 42.12 3.51
3093 6152 6.488683 AGTTAAACATCACTTTTTCGGGATGA 59.511 34.615 9.77 0.00 39.52 2.92
3095 6154 5.782893 AACATCACTTTTTCGGGATGAAA 57.217 34.783 9.77 0.00 44.70 2.69
3108 6167 6.401047 TCGGGATGAAAATAGACGTAGAAT 57.599 37.500 0.00 0.00 0.00 2.40
3109 6168 6.812998 TCGGGATGAAAATAGACGTAGAATT 58.187 36.000 0.00 0.00 0.00 2.17
3110 6169 7.944061 TCGGGATGAAAATAGACGTAGAATTA 58.056 34.615 0.00 0.00 0.00 1.40
3111 6170 7.864379 TCGGGATGAAAATAGACGTAGAATTAC 59.136 37.037 0.00 0.00 0.00 1.89
3112 6171 7.866393 CGGGATGAAAATAGACGTAGAATTACT 59.134 37.037 0.00 0.00 0.00 2.24
3113 6172 9.194271 GGGATGAAAATAGACGTAGAATTACTC 57.806 37.037 0.00 0.00 0.00 2.59
3114 6173 8.903723 GGATGAAAATAGACGTAGAATTACTCG 58.096 37.037 0.00 0.00 0.00 4.18
3115 6174 9.661187 GATGAAAATAGACGTAGAATTACTCGA 57.339 33.333 0.00 0.00 0.00 4.04
3117 6176 9.499585 TGAAAATAGACGTAGAATTACTCGAAG 57.500 33.333 0.00 0.00 0.00 3.79
3118 6177 8.853469 AAAATAGACGTAGAATTACTCGAAGG 57.147 34.615 0.00 0.00 0.00 3.46
3119 6178 4.897025 AGACGTAGAATTACTCGAAGGG 57.103 45.455 0.00 0.00 0.00 3.95
3120 6179 4.521146 AGACGTAGAATTACTCGAAGGGA 58.479 43.478 0.00 0.00 0.00 4.20
3121 6180 5.131784 AGACGTAGAATTACTCGAAGGGAT 58.868 41.667 0.00 0.00 0.00 3.85
3122 6181 5.239087 AGACGTAGAATTACTCGAAGGGATC 59.761 44.000 0.00 0.00 0.00 3.36
3123 6182 4.277921 ACGTAGAATTACTCGAAGGGATCC 59.722 45.833 1.92 1.92 0.00 3.36
3124 6183 4.321082 CGTAGAATTACTCGAAGGGATCCC 60.321 50.000 24.59 24.59 0.00 3.85
3147 6206 2.611518 ACTCGAAATAGCTGTGCTGTC 58.388 47.619 0.00 0.00 40.10 3.51
3181 6243 9.869757 AAATGATTAGGCTAAACAAAATGGTAC 57.130 29.630 19.23 0.00 0.00 3.34
3199 6261 6.371809 TGGTACAGCAAGAGTTTGTTTTAG 57.628 37.500 0.00 0.00 36.65 1.85
3297 6359 3.879892 GTCTCAGATTGGTCATTTAGGCC 59.120 47.826 0.00 0.00 44.53 5.19
3305 6368 2.713877 GGTCATTTAGGCCAAACCGTA 58.286 47.619 5.01 0.00 46.52 4.02
3326 6389 4.706842 ATTTGACCGGATAAGGCATACT 57.293 40.909 9.46 0.00 33.69 2.12
3381 6444 4.099573 GCATGTTAAGCTGGGACTAGACTA 59.900 45.833 0.00 0.00 0.00 2.59
3401 6467 5.810095 ACTAGGCTTAAGATGGATAATGCC 58.190 41.667 6.67 0.00 39.40 4.40
3404 6470 4.352001 AGGCTTAAGATGGATAATGCCTCA 59.648 41.667 6.67 0.00 45.23 3.86
3492 6561 9.809096 CCGAATAGAGAACATACATATGCTATT 57.191 33.333 1.58 5.31 37.19 1.73
3542 6611 4.256920 CCTATGGTTTGTTCTGAGTGAGG 58.743 47.826 0.00 0.00 0.00 3.86
3570 6639 4.780815 TGGTGCCTATGGTTTATTCTGAG 58.219 43.478 0.00 0.00 0.00 3.35
3582 6651 0.112995 ATTCTGAGGCCAGGTGCAAA 59.887 50.000 5.01 0.00 43.89 3.68
3585 6654 0.971386 CTGAGGCCAGGTGCAAAAAT 59.029 50.000 5.01 0.00 43.89 1.82
3589 6672 3.389329 TGAGGCCAGGTGCAAAAATAAAA 59.611 39.130 5.01 0.00 43.89 1.52
3675 6761 9.518906 TGTTTCAATGTATAATGATCATGTTGC 57.481 29.630 9.46 4.26 0.00 4.17
3682 6768 0.335705 ATGATCATGTTGCCCCACCA 59.664 50.000 7.59 0.00 0.00 4.17
3683 6769 0.335705 TGATCATGTTGCCCCACCAT 59.664 50.000 0.00 0.00 0.00 3.55
3740 6826 2.228582 CACCAACGAGGCAATTGATTCA 59.771 45.455 10.34 0.00 43.14 2.57
3783 6869 0.326264 AGCATGTGGTGTTCCTCTCC 59.674 55.000 0.00 0.00 34.23 3.71
3803 6889 3.578282 TCCAATTGCACTGAGTGAGAGTA 59.422 43.478 18.18 0.00 35.23 2.59
3818 6904 5.187186 AGTGAGAGTATTTTTCCTTCCGCTA 59.813 40.000 0.00 0.00 0.00 4.26
3887 6973 2.669240 GCAAGAGGCGTTACCCCT 59.331 61.111 0.00 0.00 40.58 4.79
3893 6979 1.188863 GAGGCGTTACCCCTGAACTA 58.811 55.000 0.00 0.00 40.58 2.24
3934 7020 0.767375 TTGCTTCAGAAGGAGCAGGT 59.233 50.000 12.30 0.00 38.57 4.00
3965 7051 2.297033 GAGCTGGCTGAAAACATTGGAA 59.703 45.455 0.00 0.00 0.00 3.53
4003 7089 2.606108 TCATTGACCTGATCGTTGTCG 58.394 47.619 5.08 0.00 38.55 4.35
4004 7090 1.660607 CATTGACCTGATCGTTGTCGG 59.339 52.381 5.08 0.00 37.69 4.79
4018 7104 4.994852 TCGTTGTCGGAAAAGATGAAGAAT 59.005 37.500 0.00 0.00 37.69 2.40
4084 7170 2.724690 CGTCAGTTGTTAGTCTGTTCCG 59.275 50.000 0.00 0.00 33.89 4.30
4132 7218 0.657840 GCTGTGACAATGCGGGATAC 59.342 55.000 0.00 0.00 0.00 2.24
4140 7226 1.942657 CAATGCGGGATACAAGGTGAG 59.057 52.381 0.00 0.00 39.74 3.51
4293 7379 1.202746 GGACCATGAGATGAAGGCCTC 60.203 57.143 5.23 0.00 0.00 4.70
4507 7593 4.795795 GTGATATCGCGATGGAAGATACTG 59.204 45.833 31.05 0.00 30.74 2.74
4510 7596 1.754803 TCGCGATGGAAGATACTGGTT 59.245 47.619 3.71 0.00 0.00 3.67
4561 7647 6.426025 GCCTTCAATGCTTTTTCTTCATCTTT 59.574 34.615 0.00 0.00 0.00 2.52
4631 7800 7.532682 AAGTTTCGTTTGCATATTTGTGTTT 57.467 28.000 0.00 0.00 0.00 2.83
4811 7983 1.850998 GGGTTAGGGCTTAGGGTTGAT 59.149 52.381 0.00 0.00 0.00 2.57
4812 7984 3.050835 GGGTTAGGGCTTAGGGTTGATA 58.949 50.000 0.00 0.00 0.00 2.15
4942 8116 2.034685 GTGGTCTTGTTTCAAAGCCCTC 59.965 50.000 0.00 0.00 0.00 4.30
4943 8117 1.266989 GGTCTTGTTTCAAAGCCCTCG 59.733 52.381 0.00 0.00 0.00 4.63
4944 8118 1.947456 GTCTTGTTTCAAAGCCCTCGT 59.053 47.619 0.00 0.00 0.00 4.18
4945 8119 2.031944 GTCTTGTTTCAAAGCCCTCGTC 60.032 50.000 0.00 0.00 0.00 4.20
4946 8120 1.946768 CTTGTTTCAAAGCCCTCGTCA 59.053 47.619 0.00 0.00 0.00 4.35
4947 8121 2.270352 TGTTTCAAAGCCCTCGTCAT 57.730 45.000 0.00 0.00 0.00 3.06
4948 8122 3.410631 TGTTTCAAAGCCCTCGTCATA 57.589 42.857 0.00 0.00 0.00 2.15
4949 8123 3.950397 TGTTTCAAAGCCCTCGTCATAT 58.050 40.909 0.00 0.00 0.00 1.78
4950 8124 5.092554 TGTTTCAAAGCCCTCGTCATATA 57.907 39.130 0.00 0.00 0.00 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.603931 CGGAGTCTATGCGTGCATCAT 60.604 52.381 11.16 9.01 38.06 2.45
3 4 2.510948 CGGAGTCTATGCGTGCATC 58.489 57.895 11.16 0.00 38.06 3.91
4 5 4.738198 CGGAGTCTATGCGTGCAT 57.262 55.556 12.54 12.54 38.06 3.96
16 17 2.659610 GCTCTTGGCAGACGGAGT 59.340 61.111 9.37 0.00 43.00 3.85
25 26 4.399004 TCTTCTCTCTAATGCTCTTGGC 57.601 45.455 0.00 0.00 42.22 4.52
26 27 6.219417 TCTTCTTCTCTCTAATGCTCTTGG 57.781 41.667 0.00 0.00 0.00 3.61
27 28 6.253298 CGTTCTTCTTCTCTCTAATGCTCTTG 59.747 42.308 0.00 0.00 0.00 3.02
28 29 6.329496 CGTTCTTCTTCTCTCTAATGCTCTT 58.671 40.000 0.00 0.00 0.00 2.85
29 30 5.163561 CCGTTCTTCTTCTCTCTAATGCTCT 60.164 44.000 0.00 0.00 0.00 4.09
30 31 5.040635 CCGTTCTTCTTCTCTCTAATGCTC 58.959 45.833 0.00 0.00 0.00 4.26
31 32 4.464597 ACCGTTCTTCTTCTCTCTAATGCT 59.535 41.667 0.00 0.00 0.00 3.79
32 33 4.749976 ACCGTTCTTCTTCTCTCTAATGC 58.250 43.478 0.00 0.00 0.00 3.56
33 34 7.763356 TCTTACCGTTCTTCTTCTCTCTAATG 58.237 38.462 0.00 0.00 0.00 1.90
34 35 7.941431 TCTTACCGTTCTTCTTCTCTCTAAT 57.059 36.000 0.00 0.00 0.00 1.73
35 36 7.148052 CCATCTTACCGTTCTTCTTCTCTCTAA 60.148 40.741 0.00 0.00 0.00 2.10
36 37 6.319152 CCATCTTACCGTTCTTCTTCTCTCTA 59.681 42.308 0.00 0.00 0.00 2.43
37 38 5.126384 CCATCTTACCGTTCTTCTTCTCTCT 59.874 44.000 0.00 0.00 0.00 3.10
38 39 5.344884 CCATCTTACCGTTCTTCTTCTCTC 58.655 45.833 0.00 0.00 0.00 3.20
39 40 4.382147 GCCATCTTACCGTTCTTCTTCTCT 60.382 45.833 0.00 0.00 0.00 3.10
40 41 3.866327 GCCATCTTACCGTTCTTCTTCTC 59.134 47.826 0.00 0.00 0.00 2.87
41 42 3.260884 TGCCATCTTACCGTTCTTCTTCT 59.739 43.478 0.00 0.00 0.00 2.85
42 43 3.596214 TGCCATCTTACCGTTCTTCTTC 58.404 45.455 0.00 0.00 0.00 2.87
43 44 3.600388 CTGCCATCTTACCGTTCTTCTT 58.400 45.455 0.00 0.00 0.00 2.52
44 45 2.093447 CCTGCCATCTTACCGTTCTTCT 60.093 50.000 0.00 0.00 0.00 2.85
45 46 2.280628 CCTGCCATCTTACCGTTCTTC 58.719 52.381 0.00 0.00 0.00 2.87
46 47 1.065418 CCCTGCCATCTTACCGTTCTT 60.065 52.381 0.00 0.00 0.00 2.52
47 48 0.541863 CCCTGCCATCTTACCGTTCT 59.458 55.000 0.00 0.00 0.00 3.01
48 49 0.539986 TCCCTGCCATCTTACCGTTC 59.460 55.000 0.00 0.00 0.00 3.95
49 50 1.134098 CATCCCTGCCATCTTACCGTT 60.134 52.381 0.00 0.00 0.00 4.44
50 51 0.469917 CATCCCTGCCATCTTACCGT 59.530 55.000 0.00 0.00 0.00 4.83
51 52 0.758734 TCATCCCTGCCATCTTACCG 59.241 55.000 0.00 0.00 0.00 4.02
52 53 2.576615 GTTCATCCCTGCCATCTTACC 58.423 52.381 0.00 0.00 0.00 2.85
53 54 2.173569 AGGTTCATCCCTGCCATCTTAC 59.826 50.000 0.00 0.00 36.75 2.34
54 55 2.173356 CAGGTTCATCCCTGCCATCTTA 59.827 50.000 0.00 0.00 45.19 2.10
55 56 1.064166 CAGGTTCATCCCTGCCATCTT 60.064 52.381 0.00 0.00 45.19 2.40
56 57 0.549950 CAGGTTCATCCCTGCCATCT 59.450 55.000 0.00 0.00 45.19 2.90
57 58 3.106738 CAGGTTCATCCCTGCCATC 57.893 57.895 0.00 0.00 45.19 3.51
63 64 0.759346 GGATACGCAGGTTCATCCCT 59.241 55.000 0.00 0.00 36.75 4.20
64 65 0.759346 AGGATACGCAGGTTCATCCC 59.241 55.000 0.00 0.00 46.39 3.85
65 66 1.412710 TGAGGATACGCAGGTTCATCC 59.587 52.381 0.00 0.00 43.45 3.51
66 67 2.890808 TGAGGATACGCAGGTTCATC 57.109 50.000 0.00 0.00 43.45 2.92
75 76 1.068250 GGCAGAGGTGAGGATACGC 59.932 63.158 0.00 0.00 46.39 4.42
76 77 1.742768 GGGCAGAGGTGAGGATACG 59.257 63.158 0.00 0.00 46.39 3.06
77 78 1.742768 CGGGCAGAGGTGAGGATAC 59.257 63.158 0.00 0.00 0.00 2.24
78 79 1.457643 CCGGGCAGAGGTGAGGATA 60.458 63.158 0.00 0.00 0.00 2.59
79 80 2.765807 CCGGGCAGAGGTGAGGAT 60.766 66.667 0.00 0.00 0.00 3.24
115 116 0.816421 CCACCGACGACCAAAAGGTT 60.816 55.000 0.00 0.00 32.04 3.50
180 183 2.445525 AGCTTCTTGGACCCTAAAACCA 59.554 45.455 0.00 0.00 0.00 3.67
319 322 3.390135 CTCGCTTGAACAGACTGGTTAA 58.610 45.455 7.51 2.11 0.00 2.01
320 323 2.288825 CCTCGCTTGAACAGACTGGTTA 60.289 50.000 7.51 0.00 0.00 2.85
352 358 1.227999 ACCACAAGAATGCCGTCGTG 61.228 55.000 0.00 0.00 33.75 4.35
356 362 0.951558 GTTCACCACAAGAATGCCGT 59.048 50.000 0.00 0.00 0.00 5.68
376 382 4.803426 CAGAGCCCGAGGACACGC 62.803 72.222 0.00 0.00 0.00 5.34
377 383 4.803426 GCAGAGCCCGAGGACACG 62.803 72.222 0.00 0.00 0.00 4.49
418 425 3.573772 CTGAAGCTCCGCACGGACA 62.574 63.158 7.89 3.83 39.76 4.02
422 429 1.934220 TACCTCTGAAGCTCCGCACG 61.934 60.000 0.00 0.00 0.00 5.34
424 431 0.612174 ACTACCTCTGAAGCTCCGCA 60.612 55.000 0.00 0.00 0.00 5.69
435 442 0.180642 TCCGCTCATCGACTACCTCT 59.819 55.000 0.00 0.00 41.67 3.69
447 454 0.745486 CCACAATCTGCATCCGCTCA 60.745 55.000 0.00 0.00 39.64 4.26
481 488 1.446966 GACGCTCCTTCTGCCAGAC 60.447 63.158 0.00 0.00 0.00 3.51
499 506 2.743928 GAACCACGAGCCCAGCAG 60.744 66.667 0.00 0.00 0.00 4.24
531 538 0.531200 GACGTCGATGGAGGAAACCT 59.469 55.000 9.90 0.00 36.03 3.50
542 549 0.389391 CCCATGGCTAAGACGTCGAT 59.611 55.000 10.46 6.01 0.00 3.59
555 562 2.057140 TCATATCTGACACCCCCATGG 58.943 52.381 4.14 4.14 41.37 3.66
572 581 1.812571 GGACACGCCATCAAACTTCAT 59.187 47.619 0.00 0.00 36.34 2.57
575 584 1.234615 CCGGACACGCCATCAAACTT 61.235 55.000 0.00 0.00 39.22 2.66
621 631 3.718815 GCCAAAAACGAAACCATTACCA 58.281 40.909 0.00 0.00 0.00 3.25
666 679 2.212652 GCTCCATCGTTGATATGCACA 58.787 47.619 0.00 0.00 0.00 4.57
667 680 1.532868 GGCTCCATCGTTGATATGCAC 59.467 52.381 0.00 0.00 0.00 4.57
677 690 1.079819 CTTGACACGGCTCCATCGT 60.080 57.895 0.00 0.00 41.93 3.73
689 702 1.270826 CCTTCTCACTCGAGCTTGACA 59.729 52.381 13.61 0.00 39.30 3.58
798 815 9.492973 AAGACCAACATGATAAAATTGAAAAGG 57.507 29.630 0.00 0.00 0.00 3.11
849 868 8.645487 CATGAATATGTGTCTCATTCGTATCAG 58.355 37.037 0.00 0.00 37.91 2.90
967 990 0.466372 AGAGAGATGCGGATCGGTCA 60.466 55.000 18.85 1.52 33.34 4.02
1138 1161 2.649742 ACCTGAGAATGGAGGGAAGA 57.350 50.000 0.00 0.00 33.16 2.87
1230 1253 2.664081 AAAGCCGAGAGCCTCCTGG 61.664 63.158 0.00 0.00 45.47 4.45
1244 1267 4.025401 CCGACACGGTGGCAAAGC 62.025 66.667 15.40 0.00 42.73 3.51
1615 1640 6.450545 TGTATCAGTTCAGTCAGAAGTTCAG 58.549 40.000 5.50 0.00 37.81 3.02
1618 1643 6.652481 CCAATGTATCAGTTCAGTCAGAAGTT 59.348 38.462 0.00 0.00 37.81 2.66
1619 1644 6.169094 CCAATGTATCAGTTCAGTCAGAAGT 58.831 40.000 0.00 0.00 40.54 3.01
1620 1645 5.583854 CCCAATGTATCAGTTCAGTCAGAAG 59.416 44.000 0.00 0.00 36.78 2.85
1621 1646 5.491070 CCCAATGTATCAGTTCAGTCAGAA 58.509 41.667 0.00 0.00 0.00 3.02
1622 1647 4.080919 CCCCAATGTATCAGTTCAGTCAGA 60.081 45.833 0.00 0.00 0.00 3.27
1623 1648 4.194640 CCCCAATGTATCAGTTCAGTCAG 58.805 47.826 0.00 0.00 0.00 3.51
1624 1649 3.587061 ACCCCAATGTATCAGTTCAGTCA 59.413 43.478 0.00 0.00 0.00 3.41
1625 1650 4.222124 ACCCCAATGTATCAGTTCAGTC 57.778 45.455 0.00 0.00 0.00 3.51
1653 1693 5.586643 GCTTTCTTAACTCCCTAGTTCCATG 59.413 44.000 0.00 0.00 42.42 3.66
1668 1708 5.124138 TGTTTTCACGTTCCTGCTTTCTTAA 59.876 36.000 0.00 0.00 0.00 1.85
1684 1738 6.605963 ATGCTAGCCATAGTGGTGTTTTCAC 61.606 44.000 13.29 0.00 40.46 3.18
1714 1770 5.816955 AGACTAATCTAGGATTTCAGGCC 57.183 43.478 0.00 0.00 31.46 5.19
1729 1785 7.801716 TGTGCAACAGAAAGTAAAGACTAAT 57.198 32.000 0.00 0.00 45.67 1.73
1774 1857 1.528824 CAGATCAGCCGGGTTCCAT 59.471 57.895 1.64 0.00 0.00 3.41
1782 1865 1.019673 CCAAATGACCAGATCAGCCG 58.980 55.000 0.00 0.00 41.91 5.52
1790 1873 9.270640 TCATGTTTTTATTTTCCAAATGACCAG 57.729 29.630 0.00 0.00 0.00 4.00
1819 2285 8.175925 TGTGATTTGTATTTCATTCCTGTCAA 57.824 30.769 0.00 0.00 0.00 3.18
1820 2286 7.094248 CCTGTGATTTGTATTTCATTCCTGTCA 60.094 37.037 0.00 0.00 0.00 3.58
1823 2289 7.121759 AGTCCTGTGATTTGTATTTCATTCCTG 59.878 37.037 0.00 0.00 0.00 3.86
1833 2299 8.918202 TGTTAAAGAAGTCCTGTGATTTGTAT 57.082 30.769 0.00 0.00 0.00 2.29
1835 2301 7.639113 TTGTTAAAGAAGTCCTGTGATTTGT 57.361 32.000 0.00 0.00 0.00 2.83
1856 2322 2.838637 TCACCTTTCTTGGGGTTTGT 57.161 45.000 0.00 0.00 32.95 2.83
1857 2323 3.640967 TCATTCACCTTTCTTGGGGTTTG 59.359 43.478 0.00 0.00 32.95 2.93
1885 2351 8.567104 GCAATTTTCCTATGTTCAAACCAAATT 58.433 29.630 0.00 0.00 0.00 1.82
1890 2356 5.793817 AGGCAATTTTCCTATGTTCAAACC 58.206 37.500 0.00 0.00 30.79 3.27
1903 2369 3.725740 CGCATACAATCGAGGCAATTTTC 59.274 43.478 0.00 0.00 0.00 2.29
1909 2375 0.392706 ATCCGCATACAATCGAGGCA 59.607 50.000 0.00 0.00 0.00 4.75
1915 2381 5.478233 TGTAAACACATCCGCATACAATC 57.522 39.130 0.00 0.00 0.00 2.67
1918 2384 5.888691 ATTTGTAAACACATCCGCATACA 57.111 34.783 0.00 0.00 0.00 2.29
1919 2385 6.910433 CCTTATTTGTAAACACATCCGCATAC 59.090 38.462 0.00 0.00 0.00 2.39
1922 2388 4.762765 ACCTTATTTGTAAACACATCCGCA 59.237 37.500 0.00 0.00 0.00 5.69
1926 2392 8.760569 CACCAAAACCTTATTTGTAAACACATC 58.239 33.333 0.00 0.00 38.37 3.06
1940 2406 7.439655 CGGATTTCAAAATTCACCAAAACCTTA 59.560 33.333 0.00 0.00 0.00 2.69
1942 2408 5.757808 CGGATTTCAAAATTCACCAAAACCT 59.242 36.000 0.00 0.00 0.00 3.50
1944 2410 5.525745 ACCGGATTTCAAAATTCACCAAAAC 59.474 36.000 9.46 0.00 0.00 2.43
1972 2439 3.505293 GGATTGATTTCCTATGCTCCAGC 59.495 47.826 0.00 0.00 35.73 4.85
1990 2457 3.385755 GTGCTGCCAAATTCCTATGGATT 59.614 43.478 0.00 0.00 39.12 3.01
1995 2462 1.340991 ACGGTGCTGCCAAATTCCTAT 60.341 47.619 0.00 0.00 36.97 2.57
2004 2471 0.749818 TCAAAGAAACGGTGCTGCCA 60.750 50.000 0.00 0.00 36.97 4.92
2020 2487 7.994425 TCTGTATAAATGCTCTTTGGTTCAA 57.006 32.000 0.00 0.00 0.00 2.69
2064 2531 8.561738 TTGTATTGTAAGATTTTCTGGAGGAC 57.438 34.615 0.00 0.00 0.00 3.85
2072 2539 8.027189 GGTCACCCTTTGTATTGTAAGATTTTC 58.973 37.037 0.00 0.00 0.00 2.29
2098 2570 4.857871 TTTATGAGAAATTCTGCGGTCG 57.142 40.909 0.00 0.00 0.00 4.79
2121 2593 2.306847 GAGACAGACTCTCCCCAGATC 58.693 57.143 0.00 0.00 39.87 2.75
2141 2613 9.704098 GCTATTAAGAAATTCCAAAGAACGTAG 57.296 33.333 0.00 0.00 33.97 3.51
2149 2621 7.123997 TGCATCCAGCTATTAAGAAATTCCAAA 59.876 33.333 0.00 0.00 45.94 3.28
2150 2622 6.606796 TGCATCCAGCTATTAAGAAATTCCAA 59.393 34.615 0.00 0.00 45.94 3.53
2160 2632 4.712051 ACATCCTGCATCCAGCTATTAA 57.288 40.909 0.00 0.00 45.94 1.40
2161 2633 5.823861 TTACATCCTGCATCCAGCTATTA 57.176 39.130 0.00 0.00 45.94 0.98
2230 5231 2.945008 TGCAACAGGAGTTTCAGACTTG 59.055 45.455 0.00 0.00 39.19 3.16
2329 5330 4.688021 ACAGAAGGAATCTAATCGACTGC 58.312 43.478 0.00 0.00 36.32 4.40
2334 5335 9.522804 GCCTTATATACAGAAGGAATCTAATCG 57.477 37.037 0.00 0.00 44.57 3.34
2336 5337 9.256228 TCGCCTTATATACAGAAGGAATCTAAT 57.744 33.333 0.00 0.00 44.57 1.73
2361 5362 3.553095 AACCGAGCCCTGGCAAGTC 62.553 63.158 11.38 0.00 44.88 3.01
2362 5363 3.570212 AACCGAGCCCTGGCAAGT 61.570 61.111 11.38 1.42 44.88 3.16
2363 5364 3.058160 CAACCGAGCCCTGGCAAG 61.058 66.667 11.38 3.47 44.88 4.01
2365 5366 3.884774 AACAACCGAGCCCTGGCA 61.885 61.111 11.38 0.00 44.88 4.92
2366 5367 3.365265 CAACAACCGAGCCCTGGC 61.365 66.667 0.00 0.00 42.33 4.85
2367 5368 3.365265 GCAACAACCGAGCCCTGG 61.365 66.667 0.00 0.00 0.00 4.45
2368 5369 3.365265 GGCAACAACCGAGCCCTG 61.365 66.667 0.00 0.00 42.58 4.45
2372 5373 0.605589 AGTTAGGGCAACAACCGAGC 60.606 55.000 0.00 0.00 39.81 5.03
2373 5374 1.002087 AGAGTTAGGGCAACAACCGAG 59.998 52.381 0.00 0.00 39.81 4.63
2396 5398 6.318648 TCAAAATAAAATAGCGGCAGTCATCT 59.681 34.615 1.45 0.00 0.00 2.90
2432 5434 9.404848 TCAACCACTATCGACTATTATATAGGG 57.595 37.037 0.00 0.00 0.00 3.53
2444 5446 5.856455 CACCAAAATTTCAACCACTATCGAC 59.144 40.000 0.00 0.00 0.00 4.20
2446 5448 6.007936 TCACCAAAATTTCAACCACTATCG 57.992 37.500 0.00 0.00 0.00 2.92
2465 5489 7.703058 TTTATTGGAAAAGAAGGATCTCACC 57.297 36.000 0.00 0.00 33.77 4.02
2481 5536 2.988570 ACGGCCGTAACATTTATTGGA 58.011 42.857 33.34 0.00 0.00 3.53
2491 5546 5.280945 TCACATAAAGTATACGGCCGTAAC 58.719 41.667 39.14 32.58 33.99 2.50
2494 5549 4.038282 TGATCACATAAAGTATACGGCCGT 59.962 41.667 36.01 36.01 0.00 5.68
2499 5554 6.097915 AGGGGTGATCACATAAAGTATACG 57.902 41.667 26.47 0.00 0.00 3.06
2512 5567 1.303236 CGCCACAAAGGGGTGATCA 60.303 57.895 0.00 0.00 44.93 2.92
2586 5642 6.549364 ACACCTTTCAGATAGATCTACTCTGG 59.451 42.308 25.62 18.37 37.57 3.86
2593 5649 7.628234 ACATTGAACACCTTTCAGATAGATCT 58.372 34.615 0.00 0.00 37.72 2.75
2674 5730 5.498393 TGCTTTAATTCGGTATTACACCCA 58.502 37.500 0.00 0.00 45.52 4.51
2700 5756 8.420374 TTCTCTATTAACTAAAGGCAACATCG 57.580 34.615 0.00 0.00 41.41 3.84
2706 5762 9.174166 GTTCCAATTCTCTATTAACTAAAGGCA 57.826 33.333 0.00 0.00 0.00 4.75
2726 5782 5.894393 TCTGATGTTAAAACCTTGGTTCCAA 59.106 36.000 5.43 4.17 0.00 3.53
2728 5784 6.040504 ACTTCTGATGTTAAAACCTTGGTTCC 59.959 38.462 5.43 0.00 0.00 3.62
2729 5785 7.039313 ACTTCTGATGTTAAAACCTTGGTTC 57.961 36.000 5.43 0.00 0.00 3.62
2730 5786 7.418337 AACTTCTGATGTTAAAACCTTGGTT 57.582 32.000 7.11 0.00 0.00 3.67
2731 5787 8.410912 GTTAACTTCTGATGTTAAAACCTTGGT 58.589 33.333 22.65 0.00 40.24 3.67
2732 5788 7.589954 CGTTAACTTCTGATGTTAAAACCTTGG 59.410 37.037 22.65 8.93 40.24 3.61
2733 5789 8.126700 ACGTTAACTTCTGATGTTAAAACCTTG 58.873 33.333 22.65 14.05 40.24 3.61
2734 5790 8.126700 CACGTTAACTTCTGATGTTAAAACCTT 58.873 33.333 22.65 8.49 40.24 3.50
2735 5791 7.496591 TCACGTTAACTTCTGATGTTAAAACCT 59.503 33.333 22.65 8.26 40.24 3.50
2736 5792 7.632721 TCACGTTAACTTCTGATGTTAAAACC 58.367 34.615 22.65 13.79 40.24 3.27
2737 5793 9.659830 ATTCACGTTAACTTCTGATGTTAAAAC 57.340 29.630 22.65 16.12 40.24 2.43
2738 5794 9.658475 CATTCACGTTAACTTCTGATGTTAAAA 57.342 29.630 22.65 16.30 40.24 1.52
2739 5795 8.832521 ACATTCACGTTAACTTCTGATGTTAAA 58.167 29.630 22.65 12.38 40.24 1.52
2740 5796 8.279800 CACATTCACGTTAACTTCTGATGTTAA 58.720 33.333 19.15 19.15 37.49 2.01
2741 5797 7.095397 CCACATTCACGTTAACTTCTGATGTTA 60.095 37.037 10.94 10.94 0.00 2.41
2742 5798 6.293407 CCACATTCACGTTAACTTCTGATGTT 60.293 38.462 12.71 12.71 0.00 2.71
2743 5799 5.179368 CCACATTCACGTTAACTTCTGATGT 59.821 40.000 3.71 5.13 0.00 3.06
2744 5800 5.179368 ACCACATTCACGTTAACTTCTGATG 59.821 40.000 3.71 4.56 0.00 3.07
2745 5801 5.179368 CACCACATTCACGTTAACTTCTGAT 59.821 40.000 3.71 0.00 0.00 2.90
2746 5802 4.509970 CACCACATTCACGTTAACTTCTGA 59.490 41.667 3.71 0.00 0.00 3.27
2747 5803 4.272504 ACACCACATTCACGTTAACTTCTG 59.727 41.667 3.71 0.00 0.00 3.02
2748 5804 4.448210 ACACCACATTCACGTTAACTTCT 58.552 39.130 3.71 0.00 0.00 2.85
2749 5805 4.806342 ACACCACATTCACGTTAACTTC 57.194 40.909 3.71 0.00 0.00 3.01
2750 5806 4.212636 GCTACACCACATTCACGTTAACTT 59.787 41.667 3.71 0.00 0.00 2.66
2751 5807 3.744426 GCTACACCACATTCACGTTAACT 59.256 43.478 3.71 0.00 0.00 2.24
2752 5808 3.495377 TGCTACACCACATTCACGTTAAC 59.505 43.478 0.00 0.00 0.00 2.01
2753 5809 3.495377 GTGCTACACCACATTCACGTTAA 59.505 43.478 0.00 0.00 35.80 2.01
2754 5810 3.061322 GTGCTACACCACATTCACGTTA 58.939 45.455 0.00 0.00 35.80 3.18
2755 5811 1.871039 GTGCTACACCACATTCACGTT 59.129 47.619 0.00 0.00 35.80 3.99
2756 5812 1.508632 GTGCTACACCACATTCACGT 58.491 50.000 0.00 0.00 35.80 4.49
2805 5861 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2806 5862 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2807 5863 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2808 5864 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2809 5865 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2810 5866 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2811 5867 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2812 5868 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2813 5869 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2814 5870 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2820 5876 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2821 5877 8.788325 AAAGTTAGTACAAAGTTGAGTCACTT 57.212 30.769 0.00 0.00 38.74 3.16
2822 5878 9.530633 CTAAAGTTAGTACAAAGTTGAGTCACT 57.469 33.333 0.00 0.00 0.00 3.41
2823 5879 9.310716 ACTAAAGTTAGTACAAAGTTGAGTCAC 57.689 33.333 1.81 0.00 41.92 3.67
2847 5903 9.310716 GACTCAACTTTGTACTAACTTTGTACT 57.689 33.333 12.73 0.00 40.44 2.73
2848 5904 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
2849 5905 9.090692 GTGACTCAACTTTGTACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
2850 5906 7.822822 AGTGACTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
2851 5907 8.197988 AGTGACTCAACTTTGTACTAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
2852 5908 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2858 5914 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2859 5915 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2860 5916 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2861 5917 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2862 5918 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2863 5919 6.605594 TGTCCCAAAATAAGTGACTCAACTTT 59.394 34.615 0.00 0.00 40.77 2.66
2864 5920 6.126409 TGTCCCAAAATAAGTGACTCAACTT 58.874 36.000 0.00 0.00 42.89 2.66
2865 5921 5.690865 TGTCCCAAAATAAGTGACTCAACT 58.309 37.500 0.00 0.00 0.00 3.16
2866 5922 5.763204 TCTGTCCCAAAATAAGTGACTCAAC 59.237 40.000 0.00 0.00 0.00 3.18
2867 5923 5.935945 TCTGTCCCAAAATAAGTGACTCAA 58.064 37.500 0.00 0.00 0.00 3.02
2868 5924 5.513094 CCTCTGTCCCAAAATAAGTGACTCA 60.513 44.000 0.00 0.00 0.00 3.41
2869 5925 4.938226 CCTCTGTCCCAAAATAAGTGACTC 59.062 45.833 0.00 0.00 0.00 3.36
2870 5926 4.263506 CCCTCTGTCCCAAAATAAGTGACT 60.264 45.833 0.00 0.00 0.00 3.41
2871 5927 4.010349 CCCTCTGTCCCAAAATAAGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
2872 5928 3.913799 TCCCTCTGTCCCAAAATAAGTGA 59.086 43.478 0.00 0.00 0.00 3.41
2873 5929 4.263506 ACTCCCTCTGTCCCAAAATAAGTG 60.264 45.833 0.00 0.00 0.00 3.16
2874 5930 3.916989 ACTCCCTCTGTCCCAAAATAAGT 59.083 43.478 0.00 0.00 0.00 2.24
2875 5931 4.576330 ACTCCCTCTGTCCCAAAATAAG 57.424 45.455 0.00 0.00 0.00 1.73
2876 5932 5.098663 AGTACTCCCTCTGTCCCAAAATAA 58.901 41.667 0.00 0.00 0.00 1.40
2877 5933 4.695606 AGTACTCCCTCTGTCCCAAAATA 58.304 43.478 0.00 0.00 0.00 1.40
2878 5934 3.532102 AGTACTCCCTCTGTCCCAAAAT 58.468 45.455 0.00 0.00 0.00 1.82
2879 5935 2.986050 AGTACTCCCTCTGTCCCAAAA 58.014 47.619 0.00 0.00 0.00 2.44
2880 5936 2.637872 CAAGTACTCCCTCTGTCCCAAA 59.362 50.000 0.00 0.00 0.00 3.28
2881 5937 2.257207 CAAGTACTCCCTCTGTCCCAA 58.743 52.381 0.00 0.00 0.00 4.12
2882 5938 1.552486 CCAAGTACTCCCTCTGTCCCA 60.552 57.143 0.00 0.00 0.00 4.37
2883 5939 1.196012 CCAAGTACTCCCTCTGTCCC 58.804 60.000 0.00 0.00 0.00 4.46
2884 5940 0.537653 GCCAAGTACTCCCTCTGTCC 59.462 60.000 0.00 0.00 0.00 4.02
2885 5941 1.267121 TGCCAAGTACTCCCTCTGTC 58.733 55.000 0.00 0.00 0.00 3.51
2886 5942 1.556911 CATGCCAAGTACTCCCTCTGT 59.443 52.381 0.00 0.00 0.00 3.41
2887 5943 1.745141 GCATGCCAAGTACTCCCTCTG 60.745 57.143 6.36 0.00 0.00 3.35
2888 5944 0.543749 GCATGCCAAGTACTCCCTCT 59.456 55.000 6.36 0.00 0.00 3.69
2889 5945 0.253044 TGCATGCCAAGTACTCCCTC 59.747 55.000 16.68 0.00 0.00 4.30
2890 5946 0.698238 TTGCATGCCAAGTACTCCCT 59.302 50.000 16.68 0.00 0.00 4.20
2891 5947 0.811281 GTTGCATGCCAAGTACTCCC 59.189 55.000 16.68 0.00 33.21 4.30
2892 5948 1.826385 AGTTGCATGCCAAGTACTCC 58.174 50.000 16.68 0.00 35.35 3.85
2893 5949 2.554032 ACAAGTTGCATGCCAAGTACTC 59.446 45.455 16.68 0.00 36.07 2.59
2894 5950 2.294233 CACAAGTTGCATGCCAAGTACT 59.706 45.455 16.68 7.86 36.07 2.73
2895 5951 2.664916 CACAAGTTGCATGCCAAGTAC 58.335 47.619 16.68 5.62 36.07 2.73
2897 5953 3.972107 CACAAGTTGCATGCCAAGT 57.028 47.368 16.68 9.60 38.74 3.16
2908 5964 3.005791 GGTTCCAATTGCTAGCACAAGTT 59.994 43.478 19.17 7.44 31.96 2.66
2913 5969 2.162681 ACAGGTTCCAATTGCTAGCAC 58.837 47.619 19.17 3.54 0.00 4.40
2931 5987 5.690865 ACTTCACAATGGAAAAGAGGTACA 58.309 37.500 0.00 0.00 0.00 2.90
2938 5994 3.181467 TGCCCAACTTCACAATGGAAAAG 60.181 43.478 0.00 0.00 36.27 2.27
2940 5996 2.392662 TGCCCAACTTCACAATGGAAA 58.607 42.857 0.00 0.00 36.27 3.13
2941 5997 2.079170 TGCCCAACTTCACAATGGAA 57.921 45.000 0.00 0.00 36.27 3.53
2968 6024 8.780846 TTAATAATCGACAAAACCTCTTGCTA 57.219 30.769 0.00 0.00 0.00 3.49
2993 6049 2.584773 ACCCTTTGTCCCTTCCCATAT 58.415 47.619 0.00 0.00 0.00 1.78
2996 6054 1.835895 TTACCCTTTGTCCCTTCCCA 58.164 50.000 0.00 0.00 0.00 4.37
3025 6083 9.609346 ACGCTTAGGTAATAATTGTTCATACTT 57.391 29.630 0.00 0.00 0.00 2.24
3030 6088 7.604927 AGTCAACGCTTAGGTAATAATTGTTCA 59.395 33.333 0.00 0.00 0.00 3.18
3048 6106 1.009675 CACACCTTGCAGTCAACGC 60.010 57.895 0.00 0.00 0.00 4.84
3066 6125 4.679654 CCCGAAAAAGTGATGTTTAACTGC 59.320 41.667 0.00 0.00 0.00 4.40
3069 6128 6.674066 TCATCCCGAAAAAGTGATGTTTAAC 58.326 36.000 0.00 0.00 36.75 2.01
3092 6151 8.956014 CCTTCGAGTAATTCTACGTCTATTTTC 58.044 37.037 0.00 0.00 32.87 2.29
3093 6152 7.919621 CCCTTCGAGTAATTCTACGTCTATTTT 59.080 37.037 0.00 0.00 32.87 1.82
3095 6154 6.769822 TCCCTTCGAGTAATTCTACGTCTATT 59.230 38.462 0.00 0.00 32.87 1.73
3101 6160 4.321082 GGGATCCCTTCGAGTAATTCTACG 60.321 50.000 24.69 0.00 32.87 3.51
3117 6176 3.579151 AGCTATTTCGAGTAAGGGATCCC 59.421 47.826 24.59 24.59 0.00 3.85
3118 6177 4.039366 ACAGCTATTTCGAGTAAGGGATCC 59.961 45.833 1.92 1.92 0.00 3.36
3119 6178 4.985409 CACAGCTATTTCGAGTAAGGGATC 59.015 45.833 0.00 0.00 0.00 3.36
3120 6179 4.740934 GCACAGCTATTTCGAGTAAGGGAT 60.741 45.833 0.00 0.00 0.00 3.85
3121 6180 3.430374 GCACAGCTATTTCGAGTAAGGGA 60.430 47.826 0.00 0.00 0.00 4.20
3122 6181 2.866762 GCACAGCTATTTCGAGTAAGGG 59.133 50.000 0.00 0.00 0.00 3.95
3123 6182 3.553511 CAGCACAGCTATTTCGAGTAAGG 59.446 47.826 0.00 0.00 36.40 2.69
3124 6183 4.177026 ACAGCACAGCTATTTCGAGTAAG 58.823 43.478 0.00 0.00 36.40 2.34
3172 6234 5.852282 ACAAACTCTTGCTGTACCATTTT 57.148 34.783 0.00 0.00 35.84 1.82
3196 6258 9.924010 GGATTAGCTCCTCCTAATCTATACTAA 57.076 37.037 16.82 0.00 46.60 2.24
3197 6259 9.070210 TGGATTAGCTCCTCCTAATCTATACTA 57.930 37.037 16.82 0.00 46.60 1.82
3198 6260 7.945278 TGGATTAGCTCCTCCTAATCTATACT 58.055 38.462 16.82 0.00 46.60 2.12
3199 6261 8.637986 CATGGATTAGCTCCTCCTAATCTATAC 58.362 40.741 15.64 5.35 45.90 1.47
3204 6266 5.247110 TGTCATGGATTAGCTCCTCCTAATC 59.753 44.000 13.92 11.55 46.65 1.75
3256 6318 3.508793 AGACAAGTCATCAAGCAAATGGG 59.491 43.478 2.72 0.00 0.00 4.00
3305 6368 4.141482 ACAGTATGCCTTATCCGGTCAAAT 60.141 41.667 0.00 0.00 42.53 2.32
3342 6405 2.233271 CATGCATCAGGTATGGGGTTC 58.767 52.381 0.00 0.00 36.12 3.62
3439 6505 4.724602 GCACTTGCACATTGTGTTTCAAAC 60.725 41.667 17.64 0.00 39.13 2.93
3441 6507 2.928757 GCACTTGCACATTGTGTTTCAA 59.071 40.909 17.64 12.07 41.59 2.69
3492 6561 8.898761 ACAATTAACAACAACAGATGTAACTGA 58.101 29.630 0.00 0.00 42.99 3.41
3493 6562 8.957028 CACAATTAACAACAACAGATGTAACTG 58.043 33.333 0.00 0.00 42.99 3.16
3494 6563 7.647715 GCACAATTAACAACAACAGATGTAACT 59.352 33.333 0.00 0.00 42.99 2.24
3516 6585 3.181445 ACTCAGAACAAACCATAGGCACA 60.181 43.478 0.00 0.00 0.00 4.57
3675 6761 4.788925 TCCTTTTGTCTATATGGTGGGG 57.211 45.455 0.00 0.00 0.00 4.96
3725 6811 7.148606 TGCTTTTTAAATGAATCAATTGCCTCG 60.149 33.333 0.00 0.00 0.00 4.63
3726 6812 8.031848 TGCTTTTTAAATGAATCAATTGCCTC 57.968 30.769 0.00 0.09 0.00 4.70
3772 6858 2.227388 CAGTGCAATTGGAGAGGAACAC 59.773 50.000 7.72 4.16 0.00 3.32
3783 6869 6.492007 AAATACTCTCACTCAGTGCAATTG 57.508 37.500 0.00 0.00 32.98 2.32
3803 6889 2.689983 CCTGCATAGCGGAAGGAAAAAT 59.310 45.455 0.00 0.00 37.02 1.82
3846 6932 5.426504 CAGGAGATATTCTTTCAGTGCAGT 58.573 41.667 0.00 0.00 0.00 4.40
3887 6973 1.199327 CGAAGTGAGGTCGCTAGTTCA 59.801 52.381 0.00 0.00 35.32 3.18
3965 7051 4.598036 ATGATCTTTGGTGAACATCCCT 57.402 40.909 0.00 0.00 0.00 4.20
4003 7089 8.669243 ACAATCGTTCTATTCTTCATCTTTTCC 58.331 33.333 0.00 0.00 0.00 3.13
4018 7104 7.341256 AGGACTAATAGGTCAACAATCGTTCTA 59.659 37.037 0.00 0.00 37.91 2.10
4084 7170 5.525378 AGAACATTAAGCATTCGACTCATCC 59.475 40.000 0.00 0.00 0.00 3.51
4132 7218 2.534298 CGAGATACAGCACTCACCTTG 58.466 52.381 0.00 0.00 33.86 3.61
4140 7226 4.689345 ACAAACTTAACCGAGATACAGCAC 59.311 41.667 0.00 0.00 0.00 4.40
4212 7298 1.808411 CCGCTGGTGATAACACTTGT 58.192 50.000 2.93 0.00 45.32 3.16
4293 7379 2.353011 GCACAAATCCACCATCACCTTG 60.353 50.000 0.00 0.00 0.00 3.61
4507 7593 3.366374 GGTGAAGCATGCAACTCTTAACC 60.366 47.826 21.98 13.53 35.00 2.85
4510 7596 2.224744 TGGGTGAAGCATGCAACTCTTA 60.225 45.455 21.98 0.00 25.79 2.10
4584 7753 9.810545 ACTTAATTTGAATTTTCGGTTCAGAAA 57.189 25.926 0.00 0.00 36.96 2.52
4758 7927 7.598869 CCTAAACCCTAAAAGCAAATGAAACTC 59.401 37.037 0.00 0.00 0.00 3.01
4948 8122 9.595357 CGCATATTCGTATTCTATATGACGTAT 57.405 33.333 0.00 0.00 35.31 3.06
4949 8123 8.819974 TCGCATATTCGTATTCTATATGACGTA 58.180 33.333 0.00 0.00 35.31 3.57
4950 8124 7.691158 TCGCATATTCGTATTCTATATGACGT 58.309 34.615 0.00 0.00 35.31 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.