Multiple sequence alignment - TraesCS5B01G135200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G135200 chr5B 100.000 7676 0 0 1 7676 254579940 254572265 0.000000e+00 14176.0
1 TraesCS5B01G135200 chr5A 95.641 4588 124 34 2205 6768 307354035 307349500 0.000000e+00 7295.0
2 TraesCS5B01G135200 chr5A 86.008 1215 63 41 801 1978 307355836 307354692 0.000000e+00 1203.0
3 TraesCS5B01G135200 chr5A 88.924 632 41 11 6796 7413 307349425 307348809 0.000000e+00 752.0
4 TraesCS5B01G135200 chr5A 88.060 402 44 4 2 400 307356704 307356304 2.510000e-129 473.0
5 TraesCS5B01G135200 chr5A 90.083 242 14 4 522 763 307356125 307355894 9.680000e-79 305.0
6 TraesCS5B01G135200 chr5A 92.857 84 3 2 446 529 307356227 307356147 1.350000e-22 119.0
7 TraesCS5B01G135200 chr5A 90.385 52 5 0 2003 2054 637053972 637054023 1.380000e-07 69.4
8 TraesCS5B01G135200 chr5D 96.173 4390 123 15 2384 6768 228781221 228776872 0.000000e+00 7134.0
9 TraesCS5B01G135200 chr5D 87.323 2193 135 59 1 2120 228783725 228781603 0.000000e+00 2377.0
10 TraesCS5B01G135200 chr5D 91.331 646 38 8 6768 7413 228776812 228776185 0.000000e+00 867.0
11 TraesCS5B01G135200 chr5D 90.222 225 17 3 2181 2400 228781456 228781232 9.750000e-74 289.0
12 TraesCS5B01G135200 chr5D 92.453 53 4 0 2002 2054 500648104 500648052 8.260000e-10 76.8
13 TraesCS5B01G135200 chr4D 85.019 267 30 7 7416 7673 278186213 278186478 5.910000e-66 263.0
14 TraesCS5B01G135200 chr4D 97.872 47 1 0 2009 2055 16197778 16197732 1.780000e-11 82.4
15 TraesCS5B01G135200 chr6B 82.019 317 44 10 7094 7407 44386187 44385881 2.750000e-64 257.0
16 TraesCS5B01G135200 chr6B 81.646 316 47 8 7094 7407 44800111 44800417 1.280000e-62 252.0
17 TraesCS5B01G135200 chr3B 83.026 271 34 8 7416 7676 345089696 345089428 1.290000e-57 235.0
18 TraesCS5B01G135200 chr3B 81.043 211 26 7 7094 7304 455069488 455069292 1.030000e-33 156.0
19 TraesCS5B01G135200 chr2B 80.317 315 47 8 7094 7407 195629165 195628865 2.790000e-54 224.0
20 TraesCS5B01G135200 chr3D 94.340 53 3 0 2002 2054 158075675 158075623 1.780000e-11 82.4
21 TraesCS5B01G135200 chr6A 92.308 52 4 0 2011 2062 80688148 80688097 2.970000e-09 75.0
22 TraesCS5B01G135200 chr4A 90.566 53 5 0 2002 2054 581333662 581333714 3.840000e-08 71.3
23 TraesCS5B01G135200 chr7A 86.207 58 7 1 2002 2059 367838826 367838882 2.310000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G135200 chr5B 254572265 254579940 7675 True 14176.000000 14176 100.000000 1 7676 1 chr5B.!!$R1 7675
1 TraesCS5B01G135200 chr5A 307348809 307356704 7895 True 1691.166667 7295 90.262167 2 7413 6 chr5A.!!$R1 7411
2 TraesCS5B01G135200 chr5D 228776185 228783725 7540 True 2666.750000 7134 91.262250 1 7413 4 chr5D.!!$R2 7412

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 285 0.101399 ACTATTGCGAGCGGAGACTG 59.899 55.000 0.00 0.00 0.00 3.51 F
469 525 0.108377 TCCATCACATCCGACGGTTG 60.108 55.000 20.79 20.79 0.00 3.77 F
1258 1381 0.179468 TGTTCCATAACCTAGCCGCC 59.821 55.000 0.00 0.00 34.49 6.13 F
2032 2238 0.033504 ACATCCGTTTGAGCGACAGT 59.966 50.000 0.00 0.00 0.00 3.55 F
2307 2997 0.041535 TCGTAAAGGTGGAGGGCCTA 59.958 55.000 5.73 0.00 34.81 3.93 F
2314 3004 1.144057 GTGGAGGGCCTATGTGTCG 59.856 63.158 5.73 0.00 34.31 4.35 F
4024 4743 1.400242 GCTGTTACTTTGAGCCTTGCG 60.400 52.381 0.00 0.00 0.00 4.85 F
4753 5472 1.338579 CCTGGAGTGAAGGAAGCTGTC 60.339 57.143 0.00 0.00 36.91 3.51 F
5438 6176 0.388659 TTTGATTTGCGCAGGTTGCT 59.611 45.000 11.31 0.00 42.25 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 1382 0.038166 GGTGTGGTGTGGTGGATGAT 59.962 55.000 0.0 0.0 0.00 2.45 R
1272 1395 0.038892 GCAAGCAAGTCATGGTGTGG 60.039 55.000 0.0 0.0 40.33 4.17 R
3142 3861 1.068895 ACACCACGGTCGAATGTTGTA 59.931 47.619 0.0 0.0 0.00 2.41 R
3622 4341 3.292460 AGTATACACTGGCTCACTCTCC 58.708 50.000 5.5 0.0 32.25 3.71 R
4057 4776 2.158827 TGCTGCAAGGTGTCTAACAAGA 60.159 45.455 0.0 0.0 0.00 3.02 R
4159 4878 2.365617 TGAAACCTCGGCTATCCAGATC 59.634 50.000 0.0 0.0 0.00 2.75 R
5125 5844 0.680921 TAGCAAGCCCAATGTCTGCC 60.681 55.000 0.0 0.0 0.00 4.85 R
5819 6558 0.984230 TGATGAAGCTTTCCCCTCGT 59.016 50.000 0.0 0.0 0.00 4.18 R
6946 7749 0.543277 TGCTCCCTTTCATCATCGCT 59.457 50.000 0.0 0.0 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 40 4.492732 CGTTCACAACAACACGTGTATTCA 60.493 41.667 23.69 3.35 40.60 2.57
74 76 3.980646 ACAATACGAGTTGCTGCAAAA 57.019 38.095 17.80 1.06 32.32 2.44
76 78 4.041723 ACAATACGAGTTGCTGCAAAAAC 58.958 39.130 17.80 5.69 32.32 2.43
91 95 1.111277 AAAACAGTGGGGTTGAGTGC 58.889 50.000 0.00 0.00 0.00 4.40
98 102 1.363807 GGGGTTGAGTGCTTGTTGC 59.636 57.895 0.00 0.00 43.25 4.17
121 125 3.134623 TGCAAGTATGGACTCATCGGATT 59.865 43.478 0.00 0.00 33.58 3.01
122 126 4.130118 GCAAGTATGGACTCATCGGATTT 58.870 43.478 0.00 0.00 33.58 2.17
123 127 4.576463 GCAAGTATGGACTCATCGGATTTT 59.424 41.667 0.00 0.00 33.58 1.82
124 128 5.277538 GCAAGTATGGACTCATCGGATTTTC 60.278 44.000 0.00 0.00 33.58 2.29
125 129 5.878406 AGTATGGACTCATCGGATTTTCT 57.122 39.130 0.00 0.00 34.96 2.52
149 153 0.249120 TGTGAGAGTGGGTTATGCCG 59.751 55.000 0.00 0.00 38.44 5.69
199 203 2.203084 TTGCAAGTGTCCCGCGAA 60.203 55.556 8.23 0.00 0.00 4.70
209 213 1.593209 TCCCGCGAACAGTGTTGTC 60.593 57.895 14.57 3.67 36.23 3.18
219 223 2.203153 GTGTTGTCACGGTGGCCT 60.203 61.111 10.66 0.00 34.79 5.19
230 234 1.678635 GGTGGCCTACAATGCTGCA 60.679 57.895 4.13 4.13 0.00 4.41
280 284 0.382515 GACTATTGCGAGCGGAGACT 59.617 55.000 0.00 0.00 0.00 3.24
281 285 0.101399 ACTATTGCGAGCGGAGACTG 59.899 55.000 0.00 0.00 0.00 3.51
338 342 0.110373 GGCGACGAATGTTGTGAACC 60.110 55.000 0.00 0.00 0.00 3.62
341 345 0.515564 GACGAATGTTGTGAACCGGG 59.484 55.000 6.32 0.00 0.00 5.73
371 376 2.390599 GCGAGGAATGTTGCGAGCA 61.391 57.895 0.00 0.00 0.00 4.26
414 419 0.179084 CGTTATGCGAGGGGTGATGT 60.179 55.000 0.00 0.00 44.77 3.06
415 420 1.299541 GTTATGCGAGGGGTGATGTG 58.700 55.000 0.00 0.00 0.00 3.21
416 421 1.134521 GTTATGCGAGGGGTGATGTGA 60.135 52.381 0.00 0.00 0.00 3.58
417 422 0.464036 TATGCGAGGGGTGATGTGAC 59.536 55.000 0.00 0.00 0.00 3.67
418 423 2.509336 GCGAGGGGTGATGTGACG 60.509 66.667 0.00 0.00 0.00 4.35
469 525 0.108377 TCCATCACATCCGACGGTTG 60.108 55.000 20.79 20.79 0.00 3.77
475 531 2.038329 ATCCGACGGTTGGGGAGA 59.962 61.111 14.79 0.00 32.43 3.71
529 612 6.460123 GCCACCCATATAATTTGTGAACAGAG 60.460 42.308 0.00 0.00 0.00 3.35
538 621 1.581934 TGTGAACAGAGCTTGAACCG 58.418 50.000 0.00 0.00 0.00 4.44
734 817 3.502123 TGTTCGTCCCTCCATTTTCTT 57.498 42.857 0.00 0.00 0.00 2.52
736 819 3.072476 TGTTCGTCCCTCCATTTTCTTCT 59.928 43.478 0.00 0.00 0.00 2.85
737 820 3.611766 TCGTCCCTCCATTTTCTTCTC 57.388 47.619 0.00 0.00 0.00 2.87
738 821 2.236395 TCGTCCCTCCATTTTCTTCTCC 59.764 50.000 0.00 0.00 0.00 3.71
739 822 2.633488 GTCCCTCCATTTTCTTCTCCG 58.367 52.381 0.00 0.00 0.00 4.63
740 823 2.027100 GTCCCTCCATTTTCTTCTCCGT 60.027 50.000 0.00 0.00 0.00 4.69
914 1037 8.489489 AGTATTAGTAGTAGTAGTACCTGTGCA 58.511 37.037 10.92 0.00 0.00 4.57
920 1043 3.784701 AGTAGTACCTGTGCATCGAAG 57.215 47.619 0.00 0.00 0.00 3.79
975 1098 4.715523 CGAACACCCGCCCCACAT 62.716 66.667 0.00 0.00 0.00 3.21
984 1107 4.777854 GCCCCACATCCCCCAACC 62.778 72.222 0.00 0.00 0.00 3.77
987 1110 3.272042 CCACATCCCCCAACCCCA 61.272 66.667 0.00 0.00 0.00 4.96
989 1112 1.076044 CACATCCCCCAACCCCATC 60.076 63.158 0.00 0.00 0.00 3.51
992 1115 2.078665 ATCCCCCAACCCCATCTCG 61.079 63.158 0.00 0.00 0.00 4.04
993 1116 4.506255 CCCCCAACCCCATCTCGC 62.506 72.222 0.00 0.00 0.00 5.03
994 1117 3.411517 CCCCAACCCCATCTCGCT 61.412 66.667 0.00 0.00 0.00 4.93
995 1118 2.190578 CCCAACCCCATCTCGCTC 59.809 66.667 0.00 0.00 0.00 5.03
1219 1342 3.834799 CCGCTCCGTCCAGGTACC 61.835 72.222 2.73 2.73 41.99 3.34
1233 1356 1.817447 AGGTACCACGACTACTTGCTC 59.183 52.381 15.94 0.00 0.00 4.26
1255 1378 3.694566 CCACTTTGTTCCATAACCTAGCC 59.305 47.826 0.00 0.00 34.49 3.93
1258 1381 0.179468 TGTTCCATAACCTAGCCGCC 59.821 55.000 0.00 0.00 34.49 6.13
1259 1382 0.179468 GTTCCATAACCTAGCCGCCA 59.821 55.000 0.00 0.00 0.00 5.69
1261 1384 0.685097 TCCATAACCTAGCCGCCATC 59.315 55.000 0.00 0.00 0.00 3.51
1262 1385 0.396435 CCATAACCTAGCCGCCATCA 59.604 55.000 0.00 0.00 0.00 3.07
1263 1386 1.003580 CCATAACCTAGCCGCCATCAT 59.996 52.381 0.00 0.00 0.00 2.45
1264 1387 2.350522 CATAACCTAGCCGCCATCATC 58.649 52.381 0.00 0.00 0.00 2.92
1265 1388 0.685097 TAACCTAGCCGCCATCATCC 59.315 55.000 0.00 0.00 0.00 3.51
1266 1389 1.344953 AACCTAGCCGCCATCATCCA 61.345 55.000 0.00 0.00 0.00 3.41
1267 1390 1.302033 CCTAGCCGCCATCATCCAC 60.302 63.158 0.00 0.00 0.00 4.02
1268 1391 1.302033 CTAGCCGCCATCATCCACC 60.302 63.158 0.00 0.00 0.00 4.61
1269 1392 2.043604 CTAGCCGCCATCATCCACCA 62.044 60.000 0.00 0.00 0.00 4.17
1270 1393 2.324014 TAGCCGCCATCATCCACCAC 62.324 60.000 0.00 0.00 0.00 4.16
1271 1394 2.271821 CCGCCATCATCCACCACA 59.728 61.111 0.00 0.00 0.00 4.17
1272 1395 2.114670 CCGCCATCATCCACCACAC 61.115 63.158 0.00 0.00 0.00 3.82
1273 1396 2.114670 CGCCATCATCCACCACACC 61.115 63.158 0.00 0.00 0.00 4.16
1274 1397 1.001020 GCCATCATCCACCACACCA 60.001 57.895 0.00 0.00 0.00 4.17
1275 1398 1.315257 GCCATCATCCACCACACCAC 61.315 60.000 0.00 0.00 0.00 4.16
1276 1399 0.038021 CCATCATCCACCACACCACA 59.962 55.000 0.00 0.00 0.00 4.17
1277 1400 1.167851 CATCATCCACCACACCACAC 58.832 55.000 0.00 0.00 0.00 3.82
1278 1401 0.038166 ATCATCCACCACACCACACC 59.962 55.000 0.00 0.00 0.00 4.16
1312 1435 2.176546 CGGCTTCAACCACGCATG 59.823 61.111 0.00 0.00 0.00 4.06
1332 1455 1.344114 GATCTCTCCCCTGCATCTCAC 59.656 57.143 0.00 0.00 0.00 3.51
1341 1464 2.092538 CCCTGCATCTCACCATCTCTTT 60.093 50.000 0.00 0.00 0.00 2.52
1343 1466 3.118334 CCTGCATCTCACCATCTCTTTCT 60.118 47.826 0.00 0.00 0.00 2.52
1344 1467 4.100653 CCTGCATCTCACCATCTCTTTCTA 59.899 45.833 0.00 0.00 0.00 2.10
1345 1468 5.273674 TGCATCTCACCATCTCTTTCTAG 57.726 43.478 0.00 0.00 0.00 2.43
1427 1551 9.086336 CACAACAGTTTCTTCAATGTGTTTATT 57.914 29.630 0.00 0.00 33.76 1.40
1451 1575 4.541250 TCTATGGAAATGGCCCAAGAAT 57.459 40.909 0.00 0.00 37.22 2.40
1455 1590 3.631250 TGGAAATGGCCCAAGAATACTC 58.369 45.455 0.00 0.00 0.00 2.59
1585 1728 4.508124 CGAAGACTTAGAGAGAGAGAGAGC 59.492 50.000 0.00 0.00 0.00 4.09
1586 1729 4.423625 AGACTTAGAGAGAGAGAGAGCC 57.576 50.000 0.00 0.00 0.00 4.70
1590 1733 2.717639 AGAGAGAGAGAGAGCCAGAC 57.282 55.000 0.00 0.00 0.00 3.51
1591 1734 2.200081 AGAGAGAGAGAGAGCCAGACT 58.800 52.381 0.00 0.00 0.00 3.24
1611 1763 1.102978 GTTCCTGCGGTTATGGCAAT 58.897 50.000 0.00 0.00 40.39 3.56
1619 1771 2.685897 GCGGTTATGGCAATCCTGTTTA 59.314 45.455 0.00 0.00 0.00 2.01
1670 1833 1.778334 TCATGTTGACTTGACCGTCG 58.222 50.000 0.00 0.00 36.71 5.12
1786 1965 1.856265 CGCTGGTGGAGTCCAAAAGC 61.856 60.000 26.86 26.86 39.44 3.51
1893 2072 9.107177 CACATCCTATCTTATCCAGCATTTATC 57.893 37.037 0.00 0.00 0.00 1.75
1898 2077 3.650942 TCTTATCCAGCATTTATCCCGGT 59.349 43.478 0.00 0.00 0.00 5.28
1901 2080 3.094484 TCCAGCATTTATCCCGGTTTT 57.906 42.857 0.00 0.00 0.00 2.43
1903 2082 3.023832 CCAGCATTTATCCCGGTTTTCT 58.976 45.455 0.00 0.00 0.00 2.52
1905 2084 4.440112 CCAGCATTTATCCCGGTTTTCTTC 60.440 45.833 0.00 0.00 0.00 2.87
1947 2126 4.148079 TCGGAGAATCTAGCATCATGTCT 58.852 43.478 0.00 0.00 33.73 3.41
1961 2142 5.347093 GCATCATGTCTAGTTCATACATCGG 59.653 44.000 0.00 0.00 31.60 4.18
1969 2150 7.232737 TGTCTAGTTCATACATCGGTCCATAAT 59.767 37.037 0.00 0.00 0.00 1.28
1978 2159 2.131854 TCGGTCCATAATCAACCCCAT 58.868 47.619 0.00 0.00 0.00 4.00
1979 2160 2.158682 TCGGTCCATAATCAACCCCATG 60.159 50.000 0.00 0.00 0.00 3.66
1981 2162 2.665165 GTCCATAATCAACCCCATGCA 58.335 47.619 0.00 0.00 0.00 3.96
1982 2163 2.624838 GTCCATAATCAACCCCATGCAG 59.375 50.000 0.00 0.00 0.00 4.41
2028 2234 4.142337 TGTTAGATACATCCGTTTGAGCGA 60.142 41.667 0.00 0.00 0.00 4.93
2031 2237 1.990799 TACATCCGTTTGAGCGACAG 58.009 50.000 0.00 0.00 0.00 3.51
2032 2238 0.033504 ACATCCGTTTGAGCGACAGT 59.966 50.000 0.00 0.00 0.00 3.55
2037 2243 4.177165 TCCGTTTGAGCGACAGTTAATA 57.823 40.909 0.00 0.00 0.00 0.98
2039 2245 4.565166 TCCGTTTGAGCGACAGTTAATATG 59.435 41.667 0.00 0.00 0.00 1.78
2044 2250 3.704566 TGAGCGACAGTTAATATGGGACT 59.295 43.478 0.00 0.00 0.00 3.85
2050 2256 4.631234 ACAGTTAATATGGGACTGAGGGA 58.369 43.478 16.05 0.00 42.54 4.20
2051 2257 4.656112 ACAGTTAATATGGGACTGAGGGAG 59.344 45.833 16.05 0.00 42.54 4.30
2085 2291 7.118496 TGGATGGCCAACGAATAAAAATATT 57.882 32.000 10.96 0.00 42.49 1.28
2121 2354 4.582869 TGACAAGAGAAATGACTCCATGG 58.417 43.478 4.97 4.97 37.60 3.66
2150 2774 5.626142 TGTATTAGGCCAAGACAGAACAAA 58.374 37.500 5.01 0.00 33.49 2.83
2160 2784 5.392165 CCAAGACAGAACAAAACCAACGTAA 60.392 40.000 0.00 0.00 0.00 3.18
2161 2785 5.883503 AGACAGAACAAAACCAACGTAAA 57.116 34.783 0.00 0.00 0.00 2.01
2192 2855 6.473758 AGACCCTCTAAAATGTTTAGACCAC 58.526 40.000 6.39 1.11 0.00 4.16
2254 2940 8.524870 AGTTGATTAAGACATTTGAATGCAAC 57.475 30.769 3.71 7.88 40.04 4.17
2307 2997 0.041535 TCGTAAAGGTGGAGGGCCTA 59.958 55.000 5.73 0.00 34.81 3.93
2314 3004 1.144057 GTGGAGGGCCTATGTGTCG 59.856 63.158 5.73 0.00 34.31 4.35
2456 3173 7.935755 CAGAGATGGAGAATAATTTAGGCAGAA 59.064 37.037 0.00 0.00 0.00 3.02
2549 3267 2.409948 ATCAGCCTGCCAACTACTTC 57.590 50.000 0.00 0.00 0.00 3.01
2571 3289 7.760340 ACTTCGGTTGTCTATTACTGAATTCTC 59.240 37.037 7.05 0.00 38.56 2.87
2627 3345 6.417327 CAGATGCTTCACGATTATTTGTCTC 58.583 40.000 2.07 0.00 0.00 3.36
2689 3408 6.644248 ATGTTTAACAGGTGAACTTAACCC 57.356 37.500 3.63 0.00 38.57 4.11
3265 3984 2.459060 TTGTTTGGGATGCATTGCAG 57.541 45.000 17.52 0.00 43.65 4.41
3622 4341 4.362470 TGATGAATCCAGCTTATCAGGG 57.638 45.455 0.00 0.00 0.00 4.45
4024 4743 1.400242 GCTGTTACTTTGAGCCTTGCG 60.400 52.381 0.00 0.00 0.00 4.85
4057 4776 6.432162 TGAAGAAGCTAATGAATGACAAAGCT 59.568 34.615 0.00 0.00 46.53 3.74
4117 4836 2.094675 GCTGGTACCATTTGCACAGAT 58.905 47.619 16.75 0.00 0.00 2.90
4198 4917 6.769341 AGGTTTCAAAGTCGGTTACAAGTAAT 59.231 34.615 0.00 0.00 0.00 1.89
4200 4919 8.558700 GGTTTCAAAGTCGGTTACAAGTAATAA 58.441 33.333 0.00 0.00 0.00 1.40
4294 5013 3.062763 CACTAGTGCAGAGGTTGTCAAG 58.937 50.000 10.54 0.00 0.00 3.02
4555 5274 8.719648 GTGATTGATCAAGATGGAGATGTTATC 58.280 37.037 14.54 1.97 38.75 1.75
4753 5472 1.338579 CCTGGAGTGAAGGAAGCTGTC 60.339 57.143 0.00 0.00 36.91 3.51
4949 5668 5.229921 TCAGGTTTGTTTCGTCTTTCTTG 57.770 39.130 0.00 0.00 0.00 3.02
4981 5700 9.959749 TTAAGTGCACTAAAAACCTTGAAATAG 57.040 29.630 22.01 0.00 0.00 1.73
5020 5739 2.671070 CAGGTCATGGCCCGTTCT 59.329 61.111 14.18 0.00 0.00 3.01
5125 5844 3.441244 TGCTCCTGCATTACACGAG 57.559 52.632 0.00 0.00 45.31 4.18
5131 5850 3.137484 TGCATTACACGAGGCAGAC 57.863 52.632 0.00 0.00 0.00 3.51
5190 5909 9.556030 GGTACTATTTTCTTATGCAGTTTTGAC 57.444 33.333 0.00 0.00 0.00 3.18
5196 5915 7.775053 TTTCTTATGCAGTTTTGACCCTATT 57.225 32.000 0.00 0.00 0.00 1.73
5285 6006 8.486210 TGACATAAGTAAGATAACAGAATGGCT 58.514 33.333 0.00 0.00 43.62 4.75
5313 6034 8.685838 TGGCTATGACAACCTATTTATTTACC 57.314 34.615 0.00 0.00 0.00 2.85
5351 6075 3.587797 TCGTCTGTGGTTGGAGTAATC 57.412 47.619 0.00 0.00 0.00 1.75
5359 6083 4.278170 TGTGGTTGGAGTAATCTTTTGCTG 59.722 41.667 0.00 0.00 0.00 4.41
5362 6086 4.762251 GGTTGGAGTAATCTTTTGCTGTCT 59.238 41.667 0.00 0.00 0.00 3.41
5363 6087 5.106515 GGTTGGAGTAATCTTTTGCTGTCTC 60.107 44.000 0.00 0.00 0.00 3.36
5364 6088 4.579869 TGGAGTAATCTTTTGCTGTCTCC 58.420 43.478 0.00 0.00 40.13 3.71
5428 6166 9.674824 CATTTCTCCATACTATCTTTGATTTGC 57.325 33.333 0.00 0.00 0.00 3.68
5438 6176 0.388659 TTTGATTTGCGCAGGTTGCT 59.611 45.000 11.31 0.00 42.25 3.91
5450 6188 0.615850 AGGTTGCTAAGGAGAGTGCC 59.384 55.000 0.00 0.00 0.00 5.01
5462 6200 2.544694 GGAGAGTGCCGATGTCATAGTG 60.545 54.545 0.00 0.00 0.00 2.74
5468 6206 2.158914 TGCCGATGTCATAGTGCTTGAT 60.159 45.455 7.52 0.00 0.00 2.57
5555 6293 2.309528 TCGTGCAGTTTCAGTTGACT 57.690 45.000 0.00 0.00 0.00 3.41
5610 6348 2.557805 CGTGCATCACAGGTGTGC 59.442 61.111 15.35 15.35 45.25 4.57
5646 6384 7.791029 TGATGTATTCATTTGACAGCTAGGTA 58.209 34.615 0.00 0.00 34.06 3.08
5651 6389 6.662414 TTCATTTGACAGCTAGGTATTTCG 57.338 37.500 0.00 0.00 0.00 3.46
5681 6420 4.853468 TGGCTCCTGGTATTCATGTTTA 57.147 40.909 0.00 0.00 0.00 2.01
5819 6558 2.038975 AAGAGGCCGCCTACTGGA 59.961 61.111 13.29 0.00 31.76 3.86
5954 6693 2.307098 CAAGGGTCCAGATTCCAAGACT 59.693 50.000 0.00 0.00 0.00 3.24
5972 6711 2.408050 ACTGTTCTCAACACGCTCATC 58.592 47.619 0.00 0.00 36.25 2.92
6023 6762 3.076621 TGATGCATTGTGAGACACCTTC 58.923 45.455 0.00 0.00 32.73 3.46
6025 6764 4.020307 TGATGCATTGTGAGACACCTTCTA 60.020 41.667 0.00 0.00 33.22 2.10
6033 6772 5.004448 TGTGAGACACCTTCTACTAGTCAG 58.996 45.833 0.00 0.00 33.22 3.51
6040 6779 7.121463 AGACACCTTCTACTAGTCAGTTACATG 59.879 40.741 0.00 0.00 36.14 3.21
6041 6780 6.946583 ACACCTTCTACTAGTCAGTTACATGA 59.053 38.462 0.00 0.00 36.14 3.07
6065 6805 3.071479 GTTCCAACTGGCGAACTAATGA 58.929 45.455 0.00 0.00 36.32 2.57
6083 6823 5.511088 AATGACAATGTACTTTCGACGAC 57.489 39.130 0.00 0.00 0.00 4.34
6088 6828 1.122849 TGTACTTTCGACGACGTTGC 58.877 50.000 10.52 0.00 40.69 4.17
6089 6829 1.122849 GTACTTTCGACGACGTTGCA 58.877 50.000 10.52 0.00 40.69 4.08
6091 6831 1.200839 CTTTCGACGACGTTGCACC 59.799 57.895 10.52 0.00 40.69 5.01
6282 7022 1.669440 GTTGGTGAGCGTGGGTCTA 59.331 57.895 0.00 0.00 0.00 2.59
6327 7067 4.450053 GAGCTATCTTGAAGTGCATTCCT 58.550 43.478 0.00 0.00 37.08 3.36
6333 7073 5.947228 TCTTGAAGTGCATTCCTGTTAAG 57.053 39.130 0.00 0.00 37.08 1.85
6372 7112 3.237268 AGTCCAAATGGTTACAAGCCA 57.763 42.857 0.00 0.00 40.68 4.75
6450 7190 2.568509 AGGCTGCATTTGCTATTTTGGT 59.431 40.909 0.50 0.00 42.66 3.67
6720 7460 9.255304 TGATGTAAACAAATTTTGAACTAAGCC 57.745 29.630 15.81 0.42 0.00 4.35
6721 7461 7.687005 TGTAAACAAATTTTGAACTAAGCCG 57.313 32.000 15.81 0.00 0.00 5.52
6722 7462 5.651172 AAACAAATTTTGAACTAAGCCGC 57.349 34.783 15.81 0.00 0.00 6.53
6779 7582 2.357517 CACTGACCGTCCACAGGC 60.358 66.667 0.00 0.00 38.30 4.85
6780 7583 2.524394 ACTGACCGTCCACAGGCT 60.524 61.111 0.00 0.00 38.30 4.58
6851 7654 1.267235 CGCAGCAACATCACTCGAATC 60.267 52.381 0.00 0.00 0.00 2.52
6886 7689 3.702045 ACCTCCGTTGGAAAAACATTTCA 59.298 39.130 3.97 0.00 32.77 2.69
6946 7749 2.655090 TTGAACTGTGGAGCCATCAA 57.345 45.000 0.00 0.00 0.00 2.57
7014 7817 0.606604 GTTGCAGACCCGGAGTAAGA 59.393 55.000 0.73 0.00 0.00 2.10
7015 7818 0.606604 TTGCAGACCCGGAGTAAGAC 59.393 55.000 0.73 0.00 0.00 3.01
7055 7858 3.074675 TCTCAGTCAGACCCTACAGAC 57.925 52.381 0.00 0.00 0.00 3.51
7075 7878 2.353579 ACGTATGAAACCAATTAGCGCC 59.646 45.455 2.29 0.00 0.00 6.53
7090 7893 1.941476 GCGCCGTGAACTACAGAACG 61.941 60.000 0.00 0.00 35.85 3.95
7139 7946 4.792068 TGATGATGGGAAATACCTTGACC 58.208 43.478 0.00 0.00 38.98 4.02
7172 7989 6.913170 ACACCTGCATATAGACAAAACAAAG 58.087 36.000 0.00 0.00 0.00 2.77
7178 7995 9.897744 CTGCATATAGACAAAACAAAGAAAGAA 57.102 29.630 0.00 0.00 0.00 2.52
7206 8023 8.122472 AGGAATGTTATAAACCAAACTGAAGG 57.878 34.615 0.00 0.00 0.00 3.46
7207 8024 7.947890 AGGAATGTTATAAACCAAACTGAAGGA 59.052 33.333 0.00 0.00 0.00 3.36
7208 8025 8.749354 GGAATGTTATAAACCAAACTGAAGGAT 58.251 33.333 0.00 0.00 0.00 3.24
7209 8026 9.788960 GAATGTTATAAACCAAACTGAAGGATC 57.211 33.333 0.00 0.00 0.00 3.36
7210 8027 7.696992 TGTTATAAACCAAACTGAAGGATCC 57.303 36.000 2.48 2.48 0.00 3.36
7219 8036 5.065218 CCAAACTGAAGGATCCAACTTATCG 59.935 44.000 15.82 0.00 0.00 2.92
7222 8039 5.420409 ACTGAAGGATCCAACTTATCGAAC 58.580 41.667 15.82 0.00 0.00 3.95
7251 8068 8.729805 ATTTCACAAAACCAAGCAGAAAATAA 57.270 26.923 0.00 0.00 0.00 1.40
7252 8069 7.769272 TTCACAAAACCAAGCAGAAAATAAG 57.231 32.000 0.00 0.00 0.00 1.73
7256 8073 6.098266 ACAAAACCAAGCAGAAAATAAGGAGT 59.902 34.615 0.00 0.00 0.00 3.85
7266 8083 8.277918 AGCAGAAAATAAGGAGTCCAATAGATT 58.722 33.333 12.86 0.00 0.00 2.40
7310 8127 2.435372 AACTTCAGAACAGTTGGGCA 57.565 45.000 0.00 0.00 33.04 5.36
7324 8141 5.163513 CAGTTGGGCACATCTTTAATTCAC 58.836 41.667 0.00 0.00 0.00 3.18
7337 8154 8.905702 CATCTTTAATTCACAAAACGGAAGAAG 58.094 33.333 0.00 0.00 0.00 2.85
7385 8202 7.717568 TGAGATAATAGAAGTACCAGCAAGTC 58.282 38.462 0.00 0.00 0.00 3.01
7413 8230 4.826733 ACAATTGACTAATGACTGCACCAA 59.173 37.500 13.59 0.00 0.00 3.67
7414 8231 5.048504 ACAATTGACTAATGACTGCACCAAG 60.049 40.000 13.59 0.00 0.00 3.61
7415 8232 3.769739 TGACTAATGACTGCACCAAGT 57.230 42.857 0.00 0.00 0.00 3.16
7416 8233 4.085357 TGACTAATGACTGCACCAAGTT 57.915 40.909 0.00 0.00 0.00 2.66
7417 8234 3.814842 TGACTAATGACTGCACCAAGTTG 59.185 43.478 0.00 0.00 0.00 3.16
7418 8235 4.065088 GACTAATGACTGCACCAAGTTGA 58.935 43.478 3.87 0.00 0.00 3.18
7419 8236 4.460263 ACTAATGACTGCACCAAGTTGAA 58.540 39.130 3.87 0.00 0.00 2.69
7420 8237 3.996150 AATGACTGCACCAAGTTGAAG 57.004 42.857 3.87 0.00 0.00 3.02
7421 8238 2.418368 TGACTGCACCAAGTTGAAGT 57.582 45.000 3.87 2.48 38.17 3.01
7423 8240 1.604278 GACTGCACCAAGTTGAAGTCC 59.396 52.381 3.87 0.00 43.96 3.85
7424 8241 0.954452 CTGCACCAAGTTGAAGTCCC 59.046 55.000 3.87 0.00 0.00 4.46
7425 8242 0.550914 TGCACCAAGTTGAAGTCCCT 59.449 50.000 3.87 0.00 0.00 4.20
7426 8243 1.771854 TGCACCAAGTTGAAGTCCCTA 59.228 47.619 3.87 0.00 0.00 3.53
7427 8244 2.224523 TGCACCAAGTTGAAGTCCCTAG 60.225 50.000 3.87 0.00 0.00 3.02
7428 8245 2.038557 GCACCAAGTTGAAGTCCCTAGA 59.961 50.000 3.87 0.00 0.00 2.43
7429 8246 3.665190 CACCAAGTTGAAGTCCCTAGAC 58.335 50.000 3.87 0.00 43.89 2.59
7430 8247 3.071023 CACCAAGTTGAAGTCCCTAGACA 59.929 47.826 3.87 0.00 46.15 3.41
7431 8248 3.910627 ACCAAGTTGAAGTCCCTAGACAT 59.089 43.478 3.87 0.00 46.15 3.06
7432 8249 4.351111 ACCAAGTTGAAGTCCCTAGACATT 59.649 41.667 3.87 0.00 46.15 2.71
7433 8250 5.546499 ACCAAGTTGAAGTCCCTAGACATTA 59.454 40.000 3.87 0.00 46.15 1.90
7434 8251 6.215636 ACCAAGTTGAAGTCCCTAGACATTAT 59.784 38.462 3.87 0.00 46.15 1.28
7435 8252 6.763610 CCAAGTTGAAGTCCCTAGACATTATC 59.236 42.308 3.87 0.00 46.15 1.75
7436 8253 7.331026 CAAGTTGAAGTCCCTAGACATTATCA 58.669 38.462 0.00 0.00 46.15 2.15
7437 8254 7.118496 AGTTGAAGTCCCTAGACATTATCAG 57.882 40.000 0.00 0.00 46.15 2.90
7438 8255 6.098982 AGTTGAAGTCCCTAGACATTATCAGG 59.901 42.308 0.00 0.00 46.15 3.86
7439 8256 5.529289 TGAAGTCCCTAGACATTATCAGGT 58.471 41.667 0.00 0.00 46.15 4.00
7440 8257 5.964477 TGAAGTCCCTAGACATTATCAGGTT 59.036 40.000 0.00 0.00 46.15 3.50
7441 8258 5.878406 AGTCCCTAGACATTATCAGGTTG 57.122 43.478 0.00 0.00 46.15 3.77
7442 8259 5.529289 AGTCCCTAGACATTATCAGGTTGA 58.471 41.667 0.00 0.00 46.15 3.18
7443 8260 5.600484 AGTCCCTAGACATTATCAGGTTGAG 59.400 44.000 0.00 0.00 46.15 3.02
7444 8261 4.345257 TCCCTAGACATTATCAGGTTGAGC 59.655 45.833 0.00 0.00 0.00 4.26
7445 8262 4.346418 CCCTAGACATTATCAGGTTGAGCT 59.654 45.833 0.00 0.00 0.00 4.09
7446 8263 5.540337 CCCTAGACATTATCAGGTTGAGCTA 59.460 44.000 0.00 0.00 0.00 3.32
7447 8264 6.042093 CCCTAGACATTATCAGGTTGAGCTAA 59.958 42.308 0.00 0.00 0.00 3.09
7448 8265 6.926272 CCTAGACATTATCAGGTTGAGCTAAC 59.074 42.308 0.00 0.00 38.60 2.34
7449 8266 6.299805 AGACATTATCAGGTTGAGCTAACA 57.700 37.500 0.00 0.00 41.18 2.41
7450 8267 6.344500 AGACATTATCAGGTTGAGCTAACAG 58.656 40.000 0.00 0.00 41.18 3.16
7451 8268 6.155221 AGACATTATCAGGTTGAGCTAACAGA 59.845 38.462 0.00 0.00 41.18 3.41
7452 8269 6.711277 ACATTATCAGGTTGAGCTAACAGAA 58.289 36.000 0.00 0.00 41.18 3.02
7453 8270 6.595716 ACATTATCAGGTTGAGCTAACAGAAC 59.404 38.462 0.00 0.00 41.18 3.01
7454 8271 4.623932 ATCAGGTTGAGCTAACAGAACA 57.376 40.909 0.00 0.00 41.18 3.18
7455 8272 4.623932 TCAGGTTGAGCTAACAGAACAT 57.376 40.909 0.00 0.00 41.18 2.71
7456 8273 4.318332 TCAGGTTGAGCTAACAGAACATG 58.682 43.478 0.00 0.00 41.18 3.21
7457 8274 4.040339 TCAGGTTGAGCTAACAGAACATGA 59.960 41.667 0.00 0.00 41.18 3.07
7458 8275 4.756642 CAGGTTGAGCTAACAGAACATGAA 59.243 41.667 0.00 0.00 41.18 2.57
7459 8276 4.757149 AGGTTGAGCTAACAGAACATGAAC 59.243 41.667 0.00 0.00 41.18 3.18
7460 8277 4.515191 GGTTGAGCTAACAGAACATGAACA 59.485 41.667 0.00 0.00 41.18 3.18
7461 8278 5.182001 GGTTGAGCTAACAGAACATGAACAT 59.818 40.000 0.00 0.00 41.18 2.71
7462 8279 6.310197 GTTGAGCTAACAGAACATGAACATC 58.690 40.000 0.00 0.00 39.16 3.06
7463 8280 5.550290 TGAGCTAACAGAACATGAACATCA 58.450 37.500 0.00 0.00 0.00 3.07
7464 8281 6.175471 TGAGCTAACAGAACATGAACATCAT 58.825 36.000 0.00 0.00 37.65 2.45
7465 8282 6.314648 TGAGCTAACAGAACATGAACATCATC 59.685 38.462 0.00 0.00 34.28 2.92
7466 8283 6.175471 AGCTAACAGAACATGAACATCATCA 58.825 36.000 0.00 0.00 34.28 3.07
7467 8284 6.827251 AGCTAACAGAACATGAACATCATCAT 59.173 34.615 0.00 0.00 40.64 2.45
7468 8285 7.989170 AGCTAACAGAACATGAACATCATCATA 59.011 33.333 0.00 0.00 37.96 2.15
7469 8286 8.781196 GCTAACAGAACATGAACATCATCATAT 58.219 33.333 0.00 0.00 37.96 1.78
7497 8314 8.232913 ACAAATAAAGCTAAAGTTCCTGAACA 57.767 30.769 12.21 0.00 43.47 3.18
7498 8315 8.691797 ACAAATAAAGCTAAAGTTCCTGAACAA 58.308 29.630 12.21 0.00 43.47 2.83
7499 8316 8.968242 CAAATAAAGCTAAAGTTCCTGAACAAC 58.032 33.333 12.21 0.00 43.47 3.32
7500 8317 7.817418 ATAAAGCTAAAGTTCCTGAACAACA 57.183 32.000 12.21 0.00 43.47 3.33
7501 8318 6.715347 AAAGCTAAAGTTCCTGAACAACAT 57.285 33.333 12.21 0.00 43.47 2.71
7502 8319 5.948992 AGCTAAAGTTCCTGAACAACATC 57.051 39.130 12.21 0.00 43.47 3.06
7503 8320 5.376625 AGCTAAAGTTCCTGAACAACATCA 58.623 37.500 12.21 0.00 43.47 3.07
7504 8321 5.471456 AGCTAAAGTTCCTGAACAACATCAG 59.529 40.000 12.21 0.00 45.19 2.90
7524 8341 6.590234 TCAGACTATACTGAGCTTTGAACA 57.410 37.500 0.00 0.00 41.21 3.18
7525 8342 6.625362 TCAGACTATACTGAGCTTTGAACAG 58.375 40.000 0.00 0.00 41.21 3.16
7526 8343 5.809562 CAGACTATACTGAGCTTTGAACAGG 59.190 44.000 4.57 0.00 39.94 4.00
7527 8344 5.717178 AGACTATACTGAGCTTTGAACAGGA 59.283 40.000 4.57 0.00 36.17 3.86
7528 8345 5.971763 ACTATACTGAGCTTTGAACAGGAG 58.028 41.667 4.57 1.89 36.17 3.69
7529 8346 4.899352 ATACTGAGCTTTGAACAGGAGT 57.101 40.909 4.57 0.00 36.17 3.85
7530 8347 2.843701 ACTGAGCTTTGAACAGGAGTG 58.156 47.619 4.57 0.00 36.17 3.51
7531 8348 1.534595 CTGAGCTTTGAACAGGAGTGC 59.465 52.381 0.00 0.00 0.00 4.40
7532 8349 1.141657 TGAGCTTTGAACAGGAGTGCT 59.858 47.619 0.00 0.00 0.00 4.40
7533 8350 2.225467 GAGCTTTGAACAGGAGTGCTT 58.775 47.619 0.00 0.00 0.00 3.91
7534 8351 2.225255 GAGCTTTGAACAGGAGTGCTTC 59.775 50.000 0.00 0.00 0.00 3.86
7535 8352 1.949525 GCTTTGAACAGGAGTGCTTCA 59.050 47.619 0.00 0.00 0.00 3.02
7536 8353 2.287248 GCTTTGAACAGGAGTGCTTCAC 60.287 50.000 0.00 0.00 34.10 3.18
7537 8354 1.967319 TTGAACAGGAGTGCTTCACC 58.033 50.000 0.00 0.00 34.49 4.02
7538 8355 0.836606 TGAACAGGAGTGCTTCACCA 59.163 50.000 0.00 0.00 34.49 4.17
7539 8356 1.211703 TGAACAGGAGTGCTTCACCAA 59.788 47.619 0.00 0.00 34.49 3.67
7540 8357 2.158623 TGAACAGGAGTGCTTCACCAAT 60.159 45.455 0.00 0.00 34.49 3.16
7541 8358 2.664402 ACAGGAGTGCTTCACCAATT 57.336 45.000 0.00 0.00 34.49 2.32
7542 8359 2.949447 ACAGGAGTGCTTCACCAATTT 58.051 42.857 0.00 0.00 34.49 1.82
7543 8360 2.887152 ACAGGAGTGCTTCACCAATTTC 59.113 45.455 0.00 0.00 34.49 2.17
7544 8361 2.886523 CAGGAGTGCTTCACCAATTTCA 59.113 45.455 0.00 0.00 34.49 2.69
7545 8362 3.318839 CAGGAGTGCTTCACCAATTTCAA 59.681 43.478 0.00 0.00 34.49 2.69
7546 8363 4.021719 CAGGAGTGCTTCACCAATTTCAAT 60.022 41.667 0.00 0.00 34.49 2.57
7547 8364 4.219288 AGGAGTGCTTCACCAATTTCAATC 59.781 41.667 0.00 0.00 34.49 2.67
7548 8365 4.219288 GGAGTGCTTCACCAATTTCAATCT 59.781 41.667 0.00 0.00 34.49 2.40
7549 8366 5.382618 AGTGCTTCACCAATTTCAATCTC 57.617 39.130 0.00 0.00 34.49 2.75
7550 8367 4.828939 AGTGCTTCACCAATTTCAATCTCA 59.171 37.500 0.00 0.00 34.49 3.27
7551 8368 5.302568 AGTGCTTCACCAATTTCAATCTCAA 59.697 36.000 0.00 0.00 34.49 3.02
7552 8369 5.984926 GTGCTTCACCAATTTCAATCTCAAA 59.015 36.000 0.00 0.00 0.00 2.69
7553 8370 5.984926 TGCTTCACCAATTTCAATCTCAAAC 59.015 36.000 0.00 0.00 0.00 2.93
7554 8371 5.984926 GCTTCACCAATTTCAATCTCAAACA 59.015 36.000 0.00 0.00 0.00 2.83
7555 8372 6.479660 GCTTCACCAATTTCAATCTCAAACAA 59.520 34.615 0.00 0.00 0.00 2.83
7556 8373 7.306983 GCTTCACCAATTTCAATCTCAAACAAG 60.307 37.037 0.00 0.00 0.00 3.16
7557 8374 7.345422 TCACCAATTTCAATCTCAAACAAGA 57.655 32.000 0.00 0.00 0.00 3.02
7558 8375 7.780064 TCACCAATTTCAATCTCAAACAAGAA 58.220 30.769 0.00 0.00 0.00 2.52
7559 8376 8.256605 TCACCAATTTCAATCTCAAACAAGAAA 58.743 29.630 0.00 0.00 0.00 2.52
7560 8377 8.881743 CACCAATTTCAATCTCAAACAAGAAAA 58.118 29.630 0.00 0.00 0.00 2.29
7561 8378 9.617523 ACCAATTTCAATCTCAAACAAGAAAAT 57.382 25.926 0.00 0.00 0.00 1.82
7637 8454 9.859427 TTTTAACAGATTGGATATCAAAGCTTG 57.141 29.630 7.92 6.88 39.05 4.01
7638 8455 8.806429 TTAACAGATTGGATATCAAAGCTTGA 57.194 30.769 7.92 0.00 45.01 3.02
7639 8456 7.707624 AACAGATTGGATATCAAAGCTTGAA 57.292 32.000 7.92 0.00 43.95 2.69
7640 8457 7.093322 ACAGATTGGATATCAAAGCTTGAAC 57.907 36.000 7.92 0.00 43.95 3.18
7641 8458 6.888632 ACAGATTGGATATCAAAGCTTGAACT 59.111 34.615 7.92 0.00 43.95 3.01
7642 8459 7.148120 ACAGATTGGATATCAAAGCTTGAACTG 60.148 37.037 7.92 0.15 43.95 3.16
7643 8460 6.888632 AGATTGGATATCAAAGCTTGAACTGT 59.111 34.615 4.71 0.00 43.95 3.55
7644 8461 6.899393 TTGGATATCAAAGCTTGAACTGTT 57.101 33.333 0.00 0.00 43.95 3.16
7645 8462 6.899393 TGGATATCAAAGCTTGAACTGTTT 57.101 33.333 0.00 0.00 43.95 2.83
7646 8463 7.994425 TGGATATCAAAGCTTGAACTGTTTA 57.006 32.000 0.00 0.00 43.95 2.01
7647 8464 8.044060 TGGATATCAAAGCTTGAACTGTTTAG 57.956 34.615 0.00 0.00 43.95 1.85
7648 8465 7.665559 TGGATATCAAAGCTTGAACTGTTTAGT 59.334 33.333 0.00 0.00 43.95 2.24
7650 8467 9.334693 GATATCAAAGCTTGAACTGTTTAGTTG 57.665 33.333 0.00 0.00 46.79 3.16
7651 8468 5.890334 TCAAAGCTTGAACTGTTTAGTTGG 58.110 37.500 0.00 0.00 46.79 3.77
7652 8469 5.650266 TCAAAGCTTGAACTGTTTAGTTGGA 59.350 36.000 0.00 0.00 46.79 3.53
7653 8470 6.151985 TCAAAGCTTGAACTGTTTAGTTGGAA 59.848 34.615 0.00 0.00 46.79 3.53
7654 8471 6.715347 AAGCTTGAACTGTTTAGTTGGAAT 57.285 33.333 0.00 0.00 46.79 3.01
7655 8472 7.817418 AAGCTTGAACTGTTTAGTTGGAATA 57.183 32.000 0.00 0.00 46.79 1.75
7656 8473 7.817418 AGCTTGAACTGTTTAGTTGGAATAA 57.183 32.000 0.00 0.00 46.79 1.40
7657 8474 8.409358 AGCTTGAACTGTTTAGTTGGAATAAT 57.591 30.769 0.00 0.00 46.79 1.28
7658 8475 8.860088 AGCTTGAACTGTTTAGTTGGAATAATT 58.140 29.630 0.00 0.00 46.79 1.40
7662 8479 8.736244 TGAACTGTTTAGTTGGAATAATTAGCC 58.264 33.333 0.00 0.00 46.79 3.93
7663 8480 8.644374 AACTGTTTAGTTGGAATAATTAGCCA 57.356 30.769 5.90 5.90 45.17 4.75
7664 8481 8.644374 ACTGTTTAGTTGGAATAATTAGCCAA 57.356 30.769 15.10 15.10 39.23 4.52
7665 8482 9.084533 ACTGTTTAGTTGGAATAATTAGCCAAA 57.915 29.630 18.82 7.01 42.77 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 8 3.000825 TGTTGTTGTGAACGTGAAGATCG 59.999 43.478 0.00 0.00 0.00 3.69
12 14 1.430479 ACGTGTTGTTGTGAACGTGA 58.570 45.000 0.00 0.00 46.58 4.35
74 76 0.258774 AAGCACTCAACCCCACTGTT 59.741 50.000 0.00 0.00 0.00 3.16
76 78 0.466189 ACAAGCACTCAACCCCACTG 60.466 55.000 0.00 0.00 0.00 3.66
91 95 8.533857 GATGAGTCCATACTTGCAGCAACAAG 62.534 46.154 15.01 15.01 41.87 3.16
98 102 2.101415 TCCGATGAGTCCATACTTGCAG 59.899 50.000 0.00 0.00 35.56 4.41
121 125 1.202687 CCCACTCTCACAGCACAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
122 126 0.394192 CCCACTCTCACAGCACAGAA 59.606 55.000 0.00 0.00 0.00 3.02
123 127 0.760567 ACCCACTCTCACAGCACAGA 60.761 55.000 0.00 0.00 0.00 3.41
124 128 0.107456 AACCCACTCTCACAGCACAG 59.893 55.000 0.00 0.00 0.00 3.66
125 129 1.419381 TAACCCACTCTCACAGCACA 58.581 50.000 0.00 0.00 0.00 4.57
149 153 1.909700 TCCTTGAAGCACCATTGTCC 58.090 50.000 0.00 0.00 0.00 4.02
182 186 2.203084 TTCGCGGGACACTTGCAA 60.203 55.556 6.13 0.00 0.00 4.08
199 203 1.817941 GCCACCGTGACAACACTGT 60.818 57.895 0.00 0.00 43.22 3.55
209 213 1.377202 AGCATTGTAGGCCACCGTG 60.377 57.895 5.01 4.34 0.00 4.94
219 223 2.876955 GCCGCTTGCAGCATTGTA 59.123 55.556 0.00 0.00 42.58 2.41
280 284 3.181490 GCTCTCATTGCAGCATCATTTCA 60.181 43.478 0.00 0.00 35.56 2.69
281 285 3.372954 GCTCTCATTGCAGCATCATTTC 58.627 45.455 0.00 0.00 35.56 2.17
336 340 4.082523 CATCACCTGTCGCCCGGT 62.083 66.667 0.00 0.00 0.00 5.28
341 345 2.835701 TTCCTCGCATCACCTGTCGC 62.836 60.000 0.00 0.00 0.00 5.19
371 376 0.389948 GATGTTTGTCCCGTCTCGCT 60.390 55.000 0.00 0.00 0.00 4.93
378 383 0.521291 ACGCAATGATGTTTGTCCCG 59.479 50.000 0.00 0.00 0.00 5.14
380 385 3.547468 GCATAACGCAATGATGTTTGTCC 59.453 43.478 1.96 0.00 41.79 4.02
414 419 1.150827 CATCTTGTTGCAGAGCGTCA 58.849 50.000 0.00 0.00 0.00 4.35
415 420 0.179205 GCATCTTGTTGCAGAGCGTC 60.179 55.000 0.00 0.00 42.31 5.19
416 421 1.871772 GCATCTTGTTGCAGAGCGT 59.128 52.632 0.00 0.00 42.31 5.07
417 422 1.225936 CGCATCTTGTTGCAGAGCG 60.226 57.895 0.00 0.00 42.91 5.03
418 423 1.136147 CCGCATCTTGTTGCAGAGC 59.864 57.895 4.82 0.00 42.91 4.09
469 525 2.027100 AGGAAAAATCAGTCGTCTCCCC 60.027 50.000 0.00 0.00 0.00 4.81
475 531 2.876079 GCAGGGAGGAAAAATCAGTCGT 60.876 50.000 0.00 0.00 0.00 4.34
516 572 3.003689 CGGTTCAAGCTCTGTTCACAAAT 59.996 43.478 0.00 0.00 0.00 2.32
529 612 3.365265 CCCACTGGCGGTTCAAGC 61.365 66.667 0.00 0.00 0.00 4.01
552 635 3.192922 CACGCCGAATCGAACCCC 61.193 66.667 3.36 0.00 0.00 4.95
577 660 1.298859 GCAGATGGTTCGTCCCACAC 61.299 60.000 0.00 0.00 37.31 3.82
578 661 1.003839 GCAGATGGTTCGTCCCACA 60.004 57.895 0.00 0.00 37.31 4.17
632 715 7.397761 TCTGTTACTTTCTCCCCTTTTTGAAAA 59.602 33.333 0.00 0.00 0.00 2.29
734 817 8.449397 GTCGCTATTTCTATTTCTATACGGAGA 58.551 37.037 0.00 0.00 0.00 3.71
736 819 7.362401 GGGTCGCTATTTCTATTTCTATACGGA 60.362 40.741 0.00 0.00 0.00 4.69
737 820 6.750963 GGGTCGCTATTTCTATTTCTATACGG 59.249 42.308 0.00 0.00 0.00 4.02
738 821 6.468319 CGGGTCGCTATTTCTATTTCTATACG 59.532 42.308 0.00 0.00 0.00 3.06
739 822 7.737525 CGGGTCGCTATTTCTATTTCTATAC 57.262 40.000 0.00 0.00 0.00 1.47
774 885 1.474330 GGGGTGCTATTTGGGTTGAG 58.526 55.000 0.00 0.00 0.00 3.02
785 907 0.178843 AAGGAAGGAAGGGGGTGCTA 60.179 55.000 0.00 0.00 0.00 3.49
887 1010 9.988815 GCACAGGTACTACTACTACTAATACTA 57.011 37.037 0.00 0.00 36.02 1.82
888 1011 8.489489 TGCACAGGTACTACTACTACTAATACT 58.511 37.037 0.00 0.00 36.02 2.12
889 1012 8.668510 TGCACAGGTACTACTACTACTAATAC 57.331 38.462 0.00 0.00 36.02 1.89
890 1013 9.499479 GATGCACAGGTACTACTACTACTAATA 57.501 37.037 0.00 0.00 36.02 0.98
891 1014 7.172875 CGATGCACAGGTACTACTACTACTAAT 59.827 40.741 0.00 0.00 36.02 1.73
892 1015 6.481313 CGATGCACAGGTACTACTACTACTAA 59.519 42.308 0.00 0.00 36.02 2.24
898 1021 4.599047 CTTCGATGCACAGGTACTACTAC 58.401 47.826 0.00 0.00 36.02 2.73
942 1065 0.753867 TTCGTGAGCACCACCACTTA 59.246 50.000 4.06 0.00 42.76 2.24
973 1096 1.538666 GAGATGGGGTTGGGGGATG 59.461 63.158 0.00 0.00 0.00 3.51
974 1097 2.078665 CGAGATGGGGTTGGGGGAT 61.079 63.158 0.00 0.00 0.00 3.85
975 1098 2.690881 CGAGATGGGGTTGGGGGA 60.691 66.667 0.00 0.00 0.00 4.81
979 1102 2.190578 GGAGCGAGATGGGGTTGG 59.809 66.667 0.00 0.00 0.00 3.77
1219 1342 2.440539 AAGTGGAGCAAGTAGTCGTG 57.559 50.000 0.00 0.00 0.00 4.35
1255 1378 2.114670 GGTGTGGTGGATGATGGCG 61.115 63.158 0.00 0.00 0.00 5.69
1258 1381 1.167851 GTGTGGTGTGGTGGATGATG 58.832 55.000 0.00 0.00 0.00 3.07
1259 1382 0.038166 GGTGTGGTGTGGTGGATGAT 59.962 55.000 0.00 0.00 0.00 2.45
1261 1384 0.251297 ATGGTGTGGTGTGGTGGATG 60.251 55.000 0.00 0.00 0.00 3.51
1262 1385 0.251297 CATGGTGTGGTGTGGTGGAT 60.251 55.000 0.00 0.00 0.00 3.41
1263 1386 1.150308 CATGGTGTGGTGTGGTGGA 59.850 57.895 0.00 0.00 0.00 4.02
1264 1387 1.150308 TCATGGTGTGGTGTGGTGG 59.850 57.895 0.00 0.00 0.00 4.61
1265 1388 0.179020 AGTCATGGTGTGGTGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
1266 1389 0.550914 AAGTCATGGTGTGGTGTGGT 59.449 50.000 0.00 0.00 0.00 4.16
1267 1390 0.953727 CAAGTCATGGTGTGGTGTGG 59.046 55.000 0.00 0.00 0.00 4.17
1268 1391 0.311790 GCAAGTCATGGTGTGGTGTG 59.688 55.000 0.00 0.00 0.00 3.82
1269 1392 0.183492 AGCAAGTCATGGTGTGGTGT 59.817 50.000 0.00 0.00 38.62 4.16
1270 1393 1.001048 CAAGCAAGTCATGGTGTGGTG 60.001 52.381 0.00 0.00 40.33 4.17
1271 1394 1.321474 CAAGCAAGTCATGGTGTGGT 58.679 50.000 0.00 0.00 40.33 4.16
1272 1395 0.038892 GCAAGCAAGTCATGGTGTGG 60.039 55.000 0.00 0.00 40.33 4.17
1273 1396 0.956633 AGCAAGCAAGTCATGGTGTG 59.043 50.000 0.00 0.00 40.33 3.82
1274 1397 1.338973 CAAGCAAGCAAGTCATGGTGT 59.661 47.619 0.00 0.00 40.33 4.16
1275 1398 1.933500 GCAAGCAAGCAAGTCATGGTG 60.934 52.381 0.00 0.00 40.33 4.17
1276 1399 0.316204 GCAAGCAAGCAAGTCATGGT 59.684 50.000 0.00 0.00 42.88 3.55
1277 1400 0.731514 CGCAAGCAAGCAAGTCATGG 60.732 55.000 0.00 0.00 0.00 3.66
1278 1401 0.731514 CCGCAAGCAAGCAAGTCATG 60.732 55.000 1.32 0.00 0.00 3.07
1312 1435 1.344114 GTGAGATGCAGGGGAGAGATC 59.656 57.143 0.00 0.00 0.00 2.75
1332 1455 9.362151 AGAAATAGGAGTACTAGAAAGAGATGG 57.638 37.037 0.00 0.00 34.56 3.51
1341 1464 8.270744 ACGGTAGAAAGAAATAGGAGTACTAGA 58.729 37.037 0.00 0.00 34.56 2.43
1343 1466 8.814038 AACGGTAGAAAGAAATAGGAGTACTA 57.186 34.615 0.00 0.00 35.80 1.82
1344 1467 7.715266 AACGGTAGAAAGAAATAGGAGTACT 57.285 36.000 0.00 0.00 0.00 2.73
1345 1468 8.031277 TGAAACGGTAGAAAGAAATAGGAGTAC 58.969 37.037 0.00 0.00 0.00 2.73
1427 1551 5.661503 TCTTGGGCCATTTCCATAGATAA 57.338 39.130 7.26 0.00 33.82 1.75
1451 1575 1.935873 GCAAGCAGCAATCGATGAGTA 59.064 47.619 0.00 0.00 44.79 2.59
1455 1590 0.306840 ATCGCAAGCAGCAATCGATG 59.693 50.000 12.80 0.00 46.13 3.84
1611 1763 0.400213 CAGGCCACCACTAAACAGGA 59.600 55.000 5.01 0.00 0.00 3.86
1670 1833 3.866582 CTCCGTCCTCCATGGCCC 61.867 72.222 6.96 0.00 35.26 5.80
1773 1952 0.827507 GGCTTGGCTTTTGGACTCCA 60.828 55.000 0.00 0.00 0.00 3.86
1786 1965 1.517242 GAGATGGCGATAAGGCTTGG 58.483 55.000 10.69 0.00 46.88 3.61
1893 2072 5.902681 AGAAAAGAAAAGAAGAAAACCGGG 58.097 37.500 6.32 0.00 0.00 5.73
1926 2105 4.517952 AGACATGATGCTAGATTCTCCG 57.482 45.455 0.00 0.00 0.00 4.63
1947 2126 7.533289 TGATTATGGACCGATGTATGAACTA 57.467 36.000 0.00 0.00 0.00 2.24
1961 2142 2.624838 CTGCATGGGGTTGATTATGGAC 59.375 50.000 0.00 0.00 0.00 4.02
1969 2150 2.890311 CAGTTTAACTGCATGGGGTTGA 59.110 45.455 12.37 0.00 39.62 3.18
2002 2198 5.005779 GCTCAAACGGATGTATCTAACACTG 59.994 44.000 0.00 0.00 42.09 3.66
2003 2199 5.109903 GCTCAAACGGATGTATCTAACACT 58.890 41.667 0.00 0.00 42.09 3.55
2004 2200 4.026804 CGCTCAAACGGATGTATCTAACAC 60.027 45.833 0.00 0.00 42.09 3.32
2006 2202 4.206609 GTCGCTCAAACGGATGTATCTAAC 59.793 45.833 0.00 0.00 0.00 2.34
2007 2203 4.142337 TGTCGCTCAAACGGATGTATCTAA 60.142 41.667 0.00 0.00 0.00 2.10
2017 2223 4.260212 CCATATTAACTGTCGCTCAAACGG 60.260 45.833 0.00 0.00 0.00 4.44
2019 2225 4.873827 TCCCATATTAACTGTCGCTCAAAC 59.126 41.667 0.00 0.00 0.00 2.93
2028 2234 4.631234 TCCCTCAGTCCCATATTAACTGT 58.369 43.478 8.14 0.00 40.94 3.55
2031 2237 5.279556 GCTACTCCCTCAGTCCCATATTAAC 60.280 48.000 0.00 0.00 36.43 2.01
2032 2238 4.838986 GCTACTCCCTCAGTCCCATATTAA 59.161 45.833 0.00 0.00 36.43 1.40
2037 2243 0.339859 TGCTACTCCCTCAGTCCCAT 59.660 55.000 0.00 0.00 36.43 4.00
2039 2245 1.964933 GTATGCTACTCCCTCAGTCCC 59.035 57.143 0.00 0.00 36.43 4.46
2044 2250 3.398318 TCCAAGTATGCTACTCCCTCA 57.602 47.619 0.00 0.00 38.26 3.86
2050 2256 2.126882 TGGCCATCCAAGTATGCTACT 58.873 47.619 0.00 0.00 39.99 2.57
2051 2257 2.638480 TGGCCATCCAAGTATGCTAC 57.362 50.000 0.00 0.00 39.99 3.58
2085 2291 2.639347 TCTTGTCATGCTTCCCTCTTGA 59.361 45.455 0.00 0.00 0.00 3.02
2121 2354 4.523083 TGTCTTGGCCTAATACATGGTTC 58.477 43.478 3.32 0.00 0.00 3.62
2129 2362 5.475564 GGTTTTGTTCTGTCTTGGCCTAATA 59.524 40.000 3.32 0.00 0.00 0.98
2131 2364 3.634910 GGTTTTGTTCTGTCTTGGCCTAA 59.365 43.478 3.32 0.00 0.00 2.69
2132 2365 3.219281 GGTTTTGTTCTGTCTTGGCCTA 58.781 45.455 3.32 0.00 0.00 3.93
2133 2366 2.031870 GGTTTTGTTCTGTCTTGGCCT 58.968 47.619 3.32 0.00 0.00 5.19
2136 2369 3.119637 ACGTTGGTTTTGTTCTGTCTTGG 60.120 43.478 0.00 0.00 0.00 3.61
2186 2849 7.056006 TCAAATAGTGCATGATAATGTGGTCT 58.944 34.615 0.00 0.00 0.00 3.85
2230 2916 7.325821 TCGTTGCATTCAAATGTCTTAATCAAC 59.674 33.333 4.76 7.13 38.65 3.18
2284 2974 1.379527 CCCTCCACCTTTACGATTGC 58.620 55.000 0.00 0.00 0.00 3.56
2290 2980 1.844497 ACATAGGCCCTCCACCTTTAC 59.156 52.381 0.00 0.00 38.81 2.01
2314 3004 3.006323 CCAGATCCAGTATAGGAGTGCAC 59.994 52.174 9.40 9.40 41.90 4.57
2456 3173 3.763897 AGCCGCCAAAAGATTCTGTAATT 59.236 39.130 0.00 0.00 0.00 1.40
2549 3267 6.574350 AGGAGAATTCAGTAATAGACAACCG 58.426 40.000 8.44 0.00 0.00 4.44
2571 3289 4.623814 TGCCAAGCATCTCGAAGG 57.376 55.556 0.00 0.00 31.71 3.46
2627 3345 2.972625 TCAAGACTGGAGTATTTGCCG 58.027 47.619 0.00 0.00 0.00 5.69
2822 3541 3.548214 GGAAAAGAGAACACGAACAAGGC 60.548 47.826 0.00 0.00 0.00 4.35
2927 3646 3.002862 TGCAACACAAGGAACGATAACAC 59.997 43.478 0.00 0.00 0.00 3.32
3142 3861 1.068895 ACACCACGGTCGAATGTTGTA 59.931 47.619 0.00 0.00 0.00 2.41
3265 3984 5.250235 TCAGAATGATAAGAGTCGTGTCC 57.750 43.478 0.69 0.00 42.56 4.02
3622 4341 3.292460 AGTATACACTGGCTCACTCTCC 58.708 50.000 5.50 0.00 32.25 3.71
4024 4743 7.543172 TCATTCATTAGCTTCTTCATTGCAAAC 59.457 33.333 1.71 0.00 0.00 2.93
4057 4776 2.158827 TGCTGCAAGGTGTCTAACAAGA 60.159 45.455 0.00 0.00 0.00 3.02
4117 4836 7.288389 TGGTTAGTAGTCAAAGTTCCTGTCTTA 59.712 37.037 0.00 0.00 0.00 2.10
4159 4878 2.365617 TGAAACCTCGGCTATCCAGATC 59.634 50.000 0.00 0.00 0.00 2.75
4225 4944 2.793933 CTCCATGCGCTTGAAGAAATG 58.206 47.619 23.56 8.85 0.00 2.32
4555 5274 1.542030 CTCCGATCGTCTGATAAGGGG 59.458 57.143 15.09 0.00 34.09 4.79
4949 5668 9.394477 CAAGGTTTTTAGTGCACTTAATAGAAC 57.606 33.333 27.06 20.86 0.00 3.01
4979 5698 8.410673 TGCCAAAGGTTGATAAAATGTTACTA 57.589 30.769 0.00 0.00 0.00 1.82
4981 5700 6.589907 CCTGCCAAAGGTTGATAAAATGTTAC 59.410 38.462 0.00 0.00 41.74 2.50
5020 5739 5.923204 AGCAAATGTTTGTCCAATGGTAAA 58.077 33.333 0.00 0.00 40.24 2.01
5125 5844 0.680921 TAGCAAGCCCAATGTCTGCC 60.681 55.000 0.00 0.00 0.00 4.85
5131 5850 1.744014 GCCCATAGCAAGCCCAATG 59.256 57.895 0.00 0.00 42.97 2.82
5190 5909 8.562892 CAATTTTCTACTGATGCTACAATAGGG 58.437 37.037 0.00 0.00 0.00 3.53
5196 5915 6.816134 TTGCAATTTTCTACTGATGCTACA 57.184 33.333 0.00 0.00 34.97 2.74
5285 6006 8.588290 AAATAAATAGGTTGTCATAGCCAACA 57.412 30.769 5.73 0.00 43.10 3.33
5313 6034 9.239002 CACAGACGAAAGAGAATTATAGGTTAG 57.761 37.037 0.00 0.00 0.00 2.34
5362 6086 3.947910 AGACGTTTATTTCTGTCGGGA 57.052 42.857 0.00 0.00 36.49 5.14
5363 6087 4.925054 TGTTAGACGTTTATTTCTGTCGGG 59.075 41.667 0.00 0.00 36.49 5.14
5364 6088 6.456447 TTGTTAGACGTTTATTTCTGTCGG 57.544 37.500 0.00 0.00 36.49 4.79
5407 6131 5.237127 TGCGCAAATCAAAGATAGTATGGAG 59.763 40.000 8.16 0.00 0.00 3.86
5413 6137 3.347216 ACCTGCGCAAATCAAAGATAGT 58.653 40.909 13.05 0.00 0.00 2.12
5414 6138 4.100529 CAACCTGCGCAAATCAAAGATAG 58.899 43.478 13.05 0.00 0.00 2.08
5415 6139 3.673052 GCAACCTGCGCAAATCAAAGATA 60.673 43.478 13.05 0.00 31.71 1.98
5416 6140 2.927871 GCAACCTGCGCAAATCAAAGAT 60.928 45.455 13.05 0.00 31.71 2.40
5417 6141 1.602668 GCAACCTGCGCAAATCAAAGA 60.603 47.619 13.05 0.00 31.71 2.52
5418 6142 0.785979 GCAACCTGCGCAAATCAAAG 59.214 50.000 13.05 0.00 31.71 2.77
5420 6144 4.651585 GCAACCTGCGCAAATCAA 57.348 50.000 13.05 0.00 31.71 2.57
5438 6176 1.847328 TGACATCGGCACTCTCCTTA 58.153 50.000 0.00 0.00 0.00 2.69
5462 6200 4.558538 AGTTGTGAAGTTGTCATCAAGC 57.441 40.909 0.00 0.00 38.90 4.01
5468 6206 9.263538 ACGTTTATTATAGTTGTGAAGTTGTCA 57.736 29.630 0.00 0.00 0.00 3.58
5555 6293 3.194329 TCACCAAAGCAACAATGTTCACA 59.806 39.130 0.00 0.00 0.00 3.58
5681 6420 2.501723 ACTCCCTGCGATGTAAGAATGT 59.498 45.455 0.00 0.00 0.00 2.71
5819 6558 0.984230 TGATGAAGCTTTCCCCTCGT 59.016 50.000 0.00 0.00 0.00 4.18
5954 6693 2.820059 AGATGAGCGTGTTGAGAACA 57.180 45.000 0.00 0.00 39.52 3.18
5972 6711 3.363178 GCAAAACACGAAGGAGTTGAAG 58.637 45.455 0.00 0.00 30.77 3.02
6023 6762 8.251026 TGGAACAATCATGTAACTGACTAGTAG 58.749 37.037 0.00 0.00 39.40 2.57
6025 6764 7.004555 TGGAACAATCATGTAACTGACTAGT 57.995 36.000 0.00 0.00 39.40 2.57
6065 6805 3.004024 ACGTCGTCGAAAGTACATTGT 57.996 42.857 9.47 0.00 40.62 2.71
6083 6823 2.611974 GTTGAATACCTGGTGCAACG 57.388 50.000 19.11 0.00 38.12 4.10
6088 6828 3.659786 TCACTTCGTTGAATACCTGGTG 58.340 45.455 10.23 0.00 0.00 4.17
6089 6829 4.062991 GTTCACTTCGTTGAATACCTGGT 58.937 43.478 4.05 4.05 37.80 4.00
6091 6831 4.377431 GCTGTTCACTTCGTTGAATACCTG 60.377 45.833 1.30 0.00 37.80 4.00
6282 7022 5.074102 TCCAATAATCAAGCTGATGGATCCT 59.926 40.000 14.23 0.00 37.15 3.24
6327 7067 5.306937 TCCAGAGATTTCACCTGACTTAACA 59.693 40.000 0.00 0.00 0.00 2.41
6333 7073 4.249661 GACTTCCAGAGATTTCACCTGAC 58.750 47.826 0.00 0.00 0.00 3.51
6450 7190 2.334946 GGCTGGCGATGCAACAGAA 61.335 57.895 13.17 0.00 34.21 3.02
6720 7460 4.981806 TTTATTTCCCTTTGATGAGGCG 57.018 40.909 0.00 0.00 35.37 5.52
6721 7461 8.641541 TCATATTTTATTTCCCTTTGATGAGGC 58.358 33.333 0.00 0.00 35.37 4.70
6779 7582 5.104941 TGGAAACTGGTGTATGATGGTAGAG 60.105 44.000 0.00 0.00 0.00 2.43
6780 7583 4.780554 TGGAAACTGGTGTATGATGGTAGA 59.219 41.667 0.00 0.00 0.00 2.59
6851 7654 2.567985 ACGGAGGTGTAGTTTGTTTGG 58.432 47.619 0.00 0.00 0.00 3.28
6886 7689 5.650266 TGAGTGTGTTGTTCCAACTTATGTT 59.350 36.000 8.41 0.00 36.75 2.71
6946 7749 0.543277 TGCTCCCTTTCATCATCGCT 59.457 50.000 0.00 0.00 0.00 4.93
7014 7817 2.040178 AGTTCAAGGAGAAGGACACGT 58.960 47.619 0.00 0.00 36.78 4.49
7015 7818 2.821991 AGTTCAAGGAGAAGGACACG 57.178 50.000 0.00 0.00 36.78 4.49
7055 7858 2.598907 CGGCGCTAATTGGTTTCATACG 60.599 50.000 7.64 0.00 0.00 3.06
7075 7878 5.174398 ACACATTAACGTTCTGTAGTTCACG 59.826 40.000 2.82 0.00 0.00 4.35
7185 8002 7.893302 TGGATCCTTCAGTTTGGTTTATAACAT 59.107 33.333 14.23 0.00 0.00 2.71
7203 8020 5.422214 ACAGTTCGATAAGTTGGATCCTT 57.578 39.130 14.23 1.23 0.00 3.36
7204 8021 6.732896 ATACAGTTCGATAAGTTGGATCCT 57.267 37.500 14.23 0.00 0.00 3.24
7205 8022 7.494625 TGAAATACAGTTCGATAAGTTGGATCC 59.505 37.037 4.20 4.20 0.00 3.36
7206 8023 8.328864 GTGAAATACAGTTCGATAAGTTGGATC 58.671 37.037 0.00 0.00 0.00 3.36
7207 8024 7.822334 TGTGAAATACAGTTCGATAAGTTGGAT 59.178 33.333 0.00 0.00 33.42 3.41
7208 8025 7.156000 TGTGAAATACAGTTCGATAAGTTGGA 58.844 34.615 0.00 0.00 33.42 3.53
7209 8026 7.359262 TGTGAAATACAGTTCGATAAGTTGG 57.641 36.000 0.00 0.00 33.42 3.77
7210 8027 9.658475 TTTTGTGAAATACAGTTCGATAAGTTG 57.342 29.630 0.00 0.00 41.10 3.16
7219 8036 6.039616 TGCTTGGTTTTGTGAAATACAGTTC 58.960 36.000 0.00 0.00 41.10 3.01
7222 8039 5.830912 TCTGCTTGGTTTTGTGAAATACAG 58.169 37.500 0.00 0.00 41.10 2.74
7292 8109 1.064758 TGTGCCCAACTGTTCTGAAGT 60.065 47.619 0.00 0.00 0.00 3.01
7310 8127 7.936584 TCTTCCGTTTTGTGAATTAAAGATGT 58.063 30.769 0.00 0.00 0.00 3.06
7363 8180 7.265673 TGTGACTTGCTGGTACTTCTATTATC 58.734 38.462 0.00 0.00 0.00 1.75
7385 8202 5.179929 TGCAGTCATTAGTCAATTGTCTGTG 59.820 40.000 14.43 12.51 0.00 3.66
7403 8220 1.604278 GGACTTCAACTTGGTGCAGTC 59.396 52.381 9.39 9.39 0.00 3.51
7405 8222 0.954452 GGGACTTCAACTTGGTGCAG 59.046 55.000 0.00 0.00 0.00 4.41
7413 8230 6.098982 CCTGATAATGTCTAGGGACTTCAACT 59.901 42.308 0.00 0.00 42.54 3.16
7414 8231 6.127026 ACCTGATAATGTCTAGGGACTTCAAC 60.127 42.308 0.00 0.00 42.54 3.18
7415 8232 5.964477 ACCTGATAATGTCTAGGGACTTCAA 59.036 40.000 0.00 0.00 42.54 2.69
7416 8233 5.529289 ACCTGATAATGTCTAGGGACTTCA 58.471 41.667 0.00 0.00 42.54 3.02
7417 8234 6.098409 TCAACCTGATAATGTCTAGGGACTTC 59.902 42.308 0.00 0.00 42.54 3.01
7418 8235 5.964477 TCAACCTGATAATGTCTAGGGACTT 59.036 40.000 0.00 0.00 42.54 3.01
7419 8236 5.529289 TCAACCTGATAATGTCTAGGGACT 58.471 41.667 0.00 0.00 42.54 3.85
7420 8237 5.740513 GCTCAACCTGATAATGTCTAGGGAC 60.741 48.000 0.00 0.00 42.42 4.46
7421 8238 4.345257 GCTCAACCTGATAATGTCTAGGGA 59.655 45.833 0.00 0.00 32.59 4.20
7422 8239 4.346418 AGCTCAACCTGATAATGTCTAGGG 59.654 45.833 0.00 0.00 32.59 3.53
7423 8240 5.543507 AGCTCAACCTGATAATGTCTAGG 57.456 43.478 0.00 0.00 33.76 3.02
7424 8241 7.492524 TGTTAGCTCAACCTGATAATGTCTAG 58.507 38.462 0.00 0.00 36.20 2.43
7425 8242 7.342026 TCTGTTAGCTCAACCTGATAATGTCTA 59.658 37.037 0.00 0.00 36.20 2.59
7426 8243 6.155221 TCTGTTAGCTCAACCTGATAATGTCT 59.845 38.462 0.00 0.00 36.20 3.41
7427 8244 6.341316 TCTGTTAGCTCAACCTGATAATGTC 58.659 40.000 0.00 0.00 36.20 3.06
7428 8245 6.299805 TCTGTTAGCTCAACCTGATAATGT 57.700 37.500 0.00 0.00 36.20 2.71
7429 8246 6.595326 TGTTCTGTTAGCTCAACCTGATAATG 59.405 38.462 0.00 0.00 36.20 1.90
7430 8247 6.711277 TGTTCTGTTAGCTCAACCTGATAAT 58.289 36.000 0.00 0.00 36.20 1.28
7431 8248 6.109156 TGTTCTGTTAGCTCAACCTGATAA 57.891 37.500 0.00 0.00 36.20 1.75
7432 8249 5.738619 TGTTCTGTTAGCTCAACCTGATA 57.261 39.130 0.00 0.00 36.20 2.15
7433 8250 4.623932 TGTTCTGTTAGCTCAACCTGAT 57.376 40.909 0.00 0.00 36.20 2.90
7434 8251 4.040339 TCATGTTCTGTTAGCTCAACCTGA 59.960 41.667 0.00 0.00 36.20 3.86
7435 8252 4.318332 TCATGTTCTGTTAGCTCAACCTG 58.682 43.478 0.00 0.00 36.20 4.00
7436 8253 4.623932 TCATGTTCTGTTAGCTCAACCT 57.376 40.909 0.00 0.00 36.20 3.50
7437 8254 4.515191 TGTTCATGTTCTGTTAGCTCAACC 59.485 41.667 0.00 0.00 36.20 3.77
7438 8255 5.673337 TGTTCATGTTCTGTTAGCTCAAC 57.327 39.130 0.00 0.00 37.67 3.18
7439 8256 5.997129 TGATGTTCATGTTCTGTTAGCTCAA 59.003 36.000 0.00 0.00 0.00 3.02
7440 8257 5.550290 TGATGTTCATGTTCTGTTAGCTCA 58.450 37.500 0.00 0.00 0.00 4.26
7441 8258 6.314648 TGATGATGTTCATGTTCTGTTAGCTC 59.685 38.462 0.00 0.00 37.20 4.09
7442 8259 6.175471 TGATGATGTTCATGTTCTGTTAGCT 58.825 36.000 0.00 0.00 37.20 3.32
7443 8260 6.426980 TGATGATGTTCATGTTCTGTTAGC 57.573 37.500 0.00 0.00 37.20 3.09
7471 8288 8.691797 TGTTCAGGAACTTTAGCTTTATTTGTT 58.308 29.630 12.86 0.00 41.67 2.83
7472 8289 8.232913 TGTTCAGGAACTTTAGCTTTATTTGT 57.767 30.769 12.86 0.00 41.67 2.83
7473 8290 8.968242 GTTGTTCAGGAACTTTAGCTTTATTTG 58.032 33.333 12.86 0.00 41.67 2.32
7474 8291 8.691797 TGTTGTTCAGGAACTTTAGCTTTATTT 58.308 29.630 12.86 0.00 41.67 1.40
7475 8292 8.232913 TGTTGTTCAGGAACTTTAGCTTTATT 57.767 30.769 12.86 0.00 41.67 1.40
7476 8293 7.817418 TGTTGTTCAGGAACTTTAGCTTTAT 57.183 32.000 12.86 0.00 41.67 1.40
7477 8294 7.500892 TGATGTTGTTCAGGAACTTTAGCTTTA 59.499 33.333 12.86 0.00 41.67 1.85
7478 8295 6.321181 TGATGTTGTTCAGGAACTTTAGCTTT 59.679 34.615 12.86 0.00 41.67 3.51
7479 8296 5.827797 TGATGTTGTTCAGGAACTTTAGCTT 59.172 36.000 12.86 0.00 41.67 3.74
7480 8297 5.376625 TGATGTTGTTCAGGAACTTTAGCT 58.623 37.500 12.86 0.00 41.67 3.32
7481 8298 5.470098 TCTGATGTTGTTCAGGAACTTTAGC 59.530 40.000 12.86 3.43 42.78 3.09
7482 8299 6.708054 AGTCTGATGTTGTTCAGGAACTTTAG 59.292 38.462 12.86 4.24 42.78 1.85
7483 8300 6.591935 AGTCTGATGTTGTTCAGGAACTTTA 58.408 36.000 12.86 0.67 42.78 1.85
7484 8301 5.440610 AGTCTGATGTTGTTCAGGAACTTT 58.559 37.500 12.86 0.00 42.78 2.66
7485 8302 5.041191 AGTCTGATGTTGTTCAGGAACTT 57.959 39.130 12.86 0.00 42.78 2.66
7486 8303 4.696479 AGTCTGATGTTGTTCAGGAACT 57.304 40.909 12.86 0.00 42.78 3.01
7487 8304 7.276658 CAGTATAGTCTGATGTTGTTCAGGAAC 59.723 40.741 5.23 5.23 42.78 3.62
7488 8305 7.178451 TCAGTATAGTCTGATGTTGTTCAGGAA 59.822 37.037 1.94 0.00 42.78 3.36
7489 8306 6.663523 TCAGTATAGTCTGATGTTGTTCAGGA 59.336 38.462 1.94 0.00 42.78 3.86
7490 8307 6.867550 TCAGTATAGTCTGATGTTGTTCAGG 58.132 40.000 1.94 0.00 42.78 3.86
7491 8308 6.475076 GCTCAGTATAGTCTGATGTTGTTCAG 59.525 42.308 0.00 0.00 42.47 3.02
7492 8309 6.153510 AGCTCAGTATAGTCTGATGTTGTTCA 59.846 38.462 0.00 0.00 42.47 3.18
7493 8310 6.568869 AGCTCAGTATAGTCTGATGTTGTTC 58.431 40.000 0.00 0.00 42.47 3.18
7494 8311 6.537453 AGCTCAGTATAGTCTGATGTTGTT 57.463 37.500 0.00 0.00 42.47 2.83
7495 8312 6.537453 AAGCTCAGTATAGTCTGATGTTGT 57.463 37.500 0.00 0.00 42.47 3.32
7496 8313 7.038048 TCAAAGCTCAGTATAGTCTGATGTTG 58.962 38.462 0.00 0.00 42.47 3.33
7497 8314 7.175347 TCAAAGCTCAGTATAGTCTGATGTT 57.825 36.000 0.00 0.00 42.47 2.71
7498 8315 6.782082 TCAAAGCTCAGTATAGTCTGATGT 57.218 37.500 0.00 0.00 42.47 3.06
7499 8316 7.038048 TGTTCAAAGCTCAGTATAGTCTGATG 58.962 38.462 0.00 0.00 42.47 3.07
7500 8317 7.175347 TGTTCAAAGCTCAGTATAGTCTGAT 57.825 36.000 0.00 0.00 42.47 2.90
7501 8318 6.350528 CCTGTTCAAAGCTCAGTATAGTCTGA 60.351 42.308 0.00 0.00 41.40 3.27
7502 8319 5.809562 CCTGTTCAAAGCTCAGTATAGTCTG 59.190 44.000 0.00 0.00 36.85 3.51
7503 8320 5.717178 TCCTGTTCAAAGCTCAGTATAGTCT 59.283 40.000 0.00 0.00 0.00 3.24
7504 8321 5.967088 TCCTGTTCAAAGCTCAGTATAGTC 58.033 41.667 0.00 0.00 0.00 2.59
7505 8322 5.482175 ACTCCTGTTCAAAGCTCAGTATAGT 59.518 40.000 0.00 0.00 0.00 2.12
7506 8323 5.809562 CACTCCTGTTCAAAGCTCAGTATAG 59.190 44.000 0.00 0.00 0.00 1.31
7507 8324 5.724328 CACTCCTGTTCAAAGCTCAGTATA 58.276 41.667 0.00 0.00 0.00 1.47
7508 8325 4.573900 CACTCCTGTTCAAAGCTCAGTAT 58.426 43.478 0.00 0.00 0.00 2.12
7509 8326 3.803715 GCACTCCTGTTCAAAGCTCAGTA 60.804 47.826 0.00 0.00 0.00 2.74
7510 8327 2.843701 CACTCCTGTTCAAAGCTCAGT 58.156 47.619 0.00 0.00 0.00 3.41
7511 8328 1.534595 GCACTCCTGTTCAAAGCTCAG 59.465 52.381 0.00 0.00 0.00 3.35
7512 8329 1.141657 AGCACTCCTGTTCAAAGCTCA 59.858 47.619 0.00 0.00 0.00 4.26
7513 8330 1.889545 AGCACTCCTGTTCAAAGCTC 58.110 50.000 0.00 0.00 0.00 4.09
7514 8331 2.225467 GAAGCACTCCTGTTCAAAGCT 58.775 47.619 0.00 0.00 0.00 3.74
7515 8332 1.949525 TGAAGCACTCCTGTTCAAAGC 59.050 47.619 0.00 0.00 0.00 3.51
7516 8333 2.291741 GGTGAAGCACTCCTGTTCAAAG 59.708 50.000 0.00 0.00 34.40 2.77
7517 8334 2.297701 GGTGAAGCACTCCTGTTCAAA 58.702 47.619 0.00 0.00 34.40 2.69
7518 8335 1.211703 TGGTGAAGCACTCCTGTTCAA 59.788 47.619 0.00 0.00 34.40 2.69
7519 8336 0.836606 TGGTGAAGCACTCCTGTTCA 59.163 50.000 0.00 0.00 34.40 3.18
7520 8337 1.967319 TTGGTGAAGCACTCCTGTTC 58.033 50.000 0.00 0.00 34.40 3.18
7521 8338 2.664402 ATTGGTGAAGCACTCCTGTT 57.336 45.000 0.00 0.00 34.40 3.16
7522 8339 2.664402 AATTGGTGAAGCACTCCTGT 57.336 45.000 0.00 0.00 34.40 4.00
7523 8340 2.886523 TGAAATTGGTGAAGCACTCCTG 59.113 45.455 0.00 0.00 34.40 3.86
7524 8341 3.228188 TGAAATTGGTGAAGCACTCCT 57.772 42.857 0.00 0.00 34.40 3.69
7525 8342 4.219288 AGATTGAAATTGGTGAAGCACTCC 59.781 41.667 0.00 0.00 34.40 3.85
7526 8343 5.048504 TGAGATTGAAATTGGTGAAGCACTC 60.049 40.000 0.00 0.00 34.40 3.51
7527 8344 4.828939 TGAGATTGAAATTGGTGAAGCACT 59.171 37.500 0.00 0.00 34.40 4.40
7528 8345 5.125100 TGAGATTGAAATTGGTGAAGCAC 57.875 39.130 0.00 0.00 0.00 4.40
7529 8346 5.787953 TTGAGATTGAAATTGGTGAAGCA 57.212 34.783 0.00 0.00 0.00 3.91
7530 8347 5.984926 TGTTTGAGATTGAAATTGGTGAAGC 59.015 36.000 0.00 0.00 0.00 3.86
7531 8348 7.922278 TCTTGTTTGAGATTGAAATTGGTGAAG 59.078 33.333 0.00 0.00 0.00 3.02
7532 8349 7.780064 TCTTGTTTGAGATTGAAATTGGTGAA 58.220 30.769 0.00 0.00 0.00 3.18
7533 8350 7.345422 TCTTGTTTGAGATTGAAATTGGTGA 57.655 32.000 0.00 0.00 0.00 4.02
7534 8351 8.422973 TTTCTTGTTTGAGATTGAAATTGGTG 57.577 30.769 0.00 0.00 0.00 4.17
7535 8352 9.617523 ATTTTCTTGTTTGAGATTGAAATTGGT 57.382 25.926 0.00 0.00 0.00 3.67
7611 8428 9.859427 CAAGCTTTGATATCCAATCTGTTAAAA 57.141 29.630 0.00 0.00 34.23 1.52
7612 8429 9.241919 TCAAGCTTTGATATCCAATCTGTTAAA 57.758 29.630 0.00 0.00 34.08 1.52
7613 8430 8.806429 TCAAGCTTTGATATCCAATCTGTTAA 57.194 30.769 0.00 0.00 34.08 2.01
7614 8431 8.677300 GTTCAAGCTTTGATATCCAATCTGTTA 58.323 33.333 0.00 0.00 39.84 2.41
7615 8432 7.395489 AGTTCAAGCTTTGATATCCAATCTGTT 59.605 33.333 0.00 0.00 39.84 3.16
7616 8433 6.888632 AGTTCAAGCTTTGATATCCAATCTGT 59.111 34.615 0.00 0.00 39.84 3.41
7617 8434 7.148120 ACAGTTCAAGCTTTGATATCCAATCTG 60.148 37.037 0.00 0.00 39.84 2.90
7618 8435 6.888632 ACAGTTCAAGCTTTGATATCCAATCT 59.111 34.615 0.00 0.00 39.84 2.40
7619 8436 7.093322 ACAGTTCAAGCTTTGATATCCAATC 57.907 36.000 0.00 0.00 39.84 2.67
7620 8437 7.472334 AACAGTTCAAGCTTTGATATCCAAT 57.528 32.000 0.00 0.00 39.84 3.16
7621 8438 6.899393 AACAGTTCAAGCTTTGATATCCAA 57.101 33.333 0.00 0.00 39.84 3.53
7622 8439 6.899393 AAACAGTTCAAGCTTTGATATCCA 57.101 33.333 0.00 0.00 39.84 3.41
7623 8440 8.045176 ACTAAACAGTTCAAGCTTTGATATCC 57.955 34.615 0.00 0.00 39.84 2.59
7624 8441 9.334693 CAACTAAACAGTTCAAGCTTTGATATC 57.665 33.333 0.00 0.00 39.84 1.63
7625 8442 8.299570 CCAACTAAACAGTTCAAGCTTTGATAT 58.700 33.333 0.00 0.00 39.84 1.63
7626 8443 7.500892 TCCAACTAAACAGTTCAAGCTTTGATA 59.499 33.333 0.00 0.00 39.84 2.15
7627 8444 6.321181 TCCAACTAAACAGTTCAAGCTTTGAT 59.679 34.615 0.00 0.00 39.84 2.57
7628 8445 5.650266 TCCAACTAAACAGTTCAAGCTTTGA 59.350 36.000 0.00 0.00 38.04 2.69
7629 8446 5.890334 TCCAACTAAACAGTTCAAGCTTTG 58.110 37.500 0.00 0.00 0.00 2.77
7630 8447 6.524101 TTCCAACTAAACAGTTCAAGCTTT 57.476 33.333 0.00 0.00 0.00 3.51
7631 8448 6.715347 ATTCCAACTAAACAGTTCAAGCTT 57.285 33.333 0.00 0.00 0.00 3.74
7632 8449 7.817418 TTATTCCAACTAAACAGTTCAAGCT 57.183 32.000 0.00 0.00 0.00 3.74
7636 8453 8.736244 GGCTAATTATTCCAACTAAACAGTTCA 58.264 33.333 0.00 0.00 0.00 3.18
7637 8454 8.736244 TGGCTAATTATTCCAACTAAACAGTTC 58.264 33.333 4.61 0.00 0.00 3.01
7638 8455 8.644374 TGGCTAATTATTCCAACTAAACAGTT 57.356 30.769 4.61 0.00 0.00 3.16
7639 8456 8.644374 TTGGCTAATTATTCCAACTAAACAGT 57.356 30.769 12.67 0.00 35.17 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.