Multiple sequence alignment - TraesCS5B01G134500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G134500 chr5B 100.000 6043 0 0 1 6043 251579923 251573881 0.000000e+00 11160
1 TraesCS5B01G134500 chr5B 94.444 144 7 1 2602 2744 251577182 251577039 2.840000e-53 220
2 TraesCS5B01G134500 chr5B 94.444 144 7 1 2742 2885 251577322 251577180 2.840000e-53 220
3 TraesCS5B01G134500 chr5B 91.667 96 8 0 2371 2466 411034776 411034871 3.800000e-27 134
4 TraesCS5B01G134500 chr5D 92.703 3234 160 31 4 3185 228072981 228069772 0.000000e+00 4595
5 TraesCS5B01G134500 chr5D 94.972 1233 44 4 3689 4918 228069140 228067923 0.000000e+00 1917
6 TraesCS5B01G134500 chr5D 92.955 511 10 2 3182 3690 228069692 228069206 0.000000e+00 721
7 TraesCS5B01G134500 chr5D 95.732 164 6 1 4902 5065 228067909 228067747 4.640000e-66 263
8 TraesCS5B01G134500 chr5D 95.833 144 5 1 2742 2885 228070356 228070214 1.310000e-56 231
9 TraesCS5B01G134500 chr5D 94.483 145 6 2 2602 2744 228070216 228070072 7.880000e-54 222
10 TraesCS5B01G134500 chr5A 96.104 1386 48 3 3689 5073 306500698 306499318 0.000000e+00 2255
11 TraesCS5B01G134500 chr5A 89.723 973 83 11 4 975 306507623 306506667 0.000000e+00 1227
12 TraesCS5B01G134500 chr5A 89.711 933 44 19 1067 1965 306504085 306503171 0.000000e+00 1144
13 TraesCS5B01G134500 chr5A 91.397 802 58 11 2602 3398 306501890 306501095 0.000000e+00 1088
14 TraesCS5B01G134500 chr5A 95.205 438 19 2 2449 2885 306502184 306501748 0.000000e+00 691
15 TraesCS5B01G134500 chr5A 95.548 292 13 0 3396 3687 306501058 306500767 9.170000e-128 468
16 TraesCS5B01G134500 chr5A 89.735 302 27 2 2077 2375 306502489 306502189 3.420000e-102 383
17 TraesCS5B01G134500 chr5A 94.444 144 8 0 2742 2885 306502031 306501888 7.880000e-54 222
18 TraesCS5B01G134500 chr5A 91.667 144 11 1 2602 2744 306501750 306501607 1.330000e-46 198
19 TraesCS5B01G134500 chr5A 95.122 82 2 1 982 1063 306504217 306504138 1.770000e-25 128
20 TraesCS5B01G134500 chr4B 92.034 590 46 1 5454 6043 624152309 624151721 0.000000e+00 828
21 TraesCS5B01G134500 chr1D 91.681 589 48 1 5455 6043 465549176 465549763 0.000000e+00 815
22 TraesCS5B01G134500 chr2B 91.356 590 50 1 5454 6043 584727207 584726619 0.000000e+00 806
23 TraesCS5B01G134500 chr2A 90.832 589 53 1 5455 6043 468332038 468331451 0.000000e+00 787
24 TraesCS5B01G134500 chr2A 90.956 586 51 2 5459 6043 691372750 691373334 0.000000e+00 787
25 TraesCS5B01G134500 chr7D 90.372 592 54 2 5455 6043 509578716 509578125 0.000000e+00 774
26 TraesCS5B01G134500 chr7D 95.652 92 3 1 2367 2457 6744972 6744881 4.880000e-31 147
27 TraesCS5B01G134500 chr4D 90.582 584 53 2 5460 6043 459552333 459552914 0.000000e+00 773
28 TraesCS5B01G134500 chr4D 97.619 84 2 0 2374 2457 7830242 7830325 1.760000e-30 145
29 TraesCS5B01G134500 chr4D 96.512 86 3 0 2372 2457 483109665 483109750 6.310000e-30 143
30 TraesCS5B01G134500 chr4D 94.505 91 5 0 2367 2457 19394958 19395048 2.270000e-29 141
31 TraesCS5B01G134500 chr7A 90.219 593 54 2 5454 6043 563353959 563354550 0.000000e+00 771
32 TraesCS5B01G134500 chr7A 90.323 589 55 2 5454 6042 733209133 733208547 0.000000e+00 771
33 TraesCS5B01G134500 chr2D 85.302 381 47 7 5074 5449 15365951 15366327 9.500000e-103 385
34 TraesCS5B01G134500 chr1B 95.506 89 2 2 2373 2461 662552779 662552693 2.270000e-29 141
35 TraesCS5B01G134500 chr6B 90.909 99 9 0 2366 2464 359864726 359864628 3.800000e-27 134
36 TraesCS5B01G134500 chr3B 94.318 88 4 1 2372 2459 256200742 256200656 3.800000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G134500 chr5B 251573881 251579923 6042 True 3866.666667 11160 96.296000 1 6043 3 chr5B.!!$R1 6042
1 TraesCS5B01G134500 chr5D 228067747 228072981 5234 True 1324.833333 4595 94.446333 4 5065 6 chr5D.!!$R1 5061
2 TraesCS5B01G134500 chr5A 306499318 306507623 8305 True 780.400000 2255 92.865600 4 5073 10 chr5A.!!$R1 5069
3 TraesCS5B01G134500 chr4B 624151721 624152309 588 True 828.000000 828 92.034000 5454 6043 1 chr4B.!!$R1 589
4 TraesCS5B01G134500 chr1D 465549176 465549763 587 False 815.000000 815 91.681000 5455 6043 1 chr1D.!!$F1 588
5 TraesCS5B01G134500 chr2B 584726619 584727207 588 True 806.000000 806 91.356000 5454 6043 1 chr2B.!!$R1 589
6 TraesCS5B01G134500 chr2A 468331451 468332038 587 True 787.000000 787 90.832000 5455 6043 1 chr2A.!!$R1 588
7 TraesCS5B01G134500 chr2A 691372750 691373334 584 False 787.000000 787 90.956000 5459 6043 1 chr2A.!!$F1 584
8 TraesCS5B01G134500 chr7D 509578125 509578716 591 True 774.000000 774 90.372000 5455 6043 1 chr7D.!!$R2 588
9 TraesCS5B01G134500 chr4D 459552333 459552914 581 False 773.000000 773 90.582000 5460 6043 1 chr4D.!!$F3 583
10 TraesCS5B01G134500 chr7A 563353959 563354550 591 False 771.000000 771 90.219000 5454 6043 1 chr7A.!!$F1 589
11 TraesCS5B01G134500 chr7A 733208547 733209133 586 True 771.000000 771 90.323000 5454 6042 1 chr7A.!!$R1 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.103208 GAGATGACGACGCCTTCCAT 59.897 55.000 0.00 0.00 0.00 3.41 F
793 795 0.177373 GGCTAGGGTTTGGACCTACG 59.823 60.000 0.00 0.00 45.75 3.51 F
1405 3910 0.316689 CGAACGGCAACTGGTTGTTC 60.317 55.000 13.85 9.33 42.31 3.18 F
1967 5050 0.318441 TGCTGTCTTTCTGGGAGACG 59.682 55.000 0.00 0.00 45.05 4.18 F
2768 5898 0.322648 CCTGCTCAGACATGGACACA 59.677 55.000 0.00 0.00 0.00 3.72 F
4199 7688 1.148273 GTGTGCCCAGAACCAGTCA 59.852 57.895 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1409 3914 0.340208 AGAAACGGAGAGAGGGGGAT 59.660 55.0 0.00 0.00 0.00 3.85 R
2706 5836 0.037326 GACACTCCGAATGCAGGTCA 60.037 55.0 0.00 0.00 0.00 4.02 R
2872 6142 0.523966 TGCCCGAAACTATTTTGCCG 59.476 50.0 0.00 0.00 0.00 5.69 R
3385 6765 0.602905 ACCAGCGCAAACCAGTACTC 60.603 55.0 11.47 0.00 0.00 2.59 R
4748 8238 0.743688 AGCGTTGTTGCAACATCCAA 59.256 45.0 31.48 15.13 38.95 3.53 R
5557 9076 0.039437 GAAAGTGTCGCCGTCTCTGA 60.039 55.0 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.139058 GGTCCATGTAGGCGTCAATCT 59.861 52.381 0.00 0.00 37.29 2.40
39 40 4.127171 CGTCAATCTCCCATTTAACCGAT 58.873 43.478 0.00 0.00 0.00 4.18
45 46 1.748493 TCCCATTTAACCGATGCTTGC 59.252 47.619 0.00 0.00 0.00 4.01
55 56 0.723414 CGATGCTTGCACTGTTCGAT 59.277 50.000 9.79 0.00 0.00 3.59
63 64 1.889170 TGCACTGTTCGATGACTCTCT 59.111 47.619 0.00 0.00 0.00 3.10
94 95 6.202188 ACAACACACGTTCTATTCTTACCAAG 59.798 38.462 0.00 0.00 31.13 3.61
152 153 1.154016 CGTTGAGATGACGACGCCT 60.154 57.895 0.00 0.00 42.82 5.52
157 158 0.103208 GAGATGACGACGCCTTCCAT 59.897 55.000 0.00 0.00 0.00 3.41
170 171 3.484407 GCCTTCCATCACATCTATTGCT 58.516 45.455 0.00 0.00 0.00 3.91
205 206 7.383687 AGATGTAAGTTAGTGATTTTCGGTGA 58.616 34.615 0.00 0.00 0.00 4.02
229 230 5.777449 TGTGAGGATCTTCTACTATTCCCA 58.223 41.667 6.38 0.00 34.92 4.37
230 231 6.202331 TGTGAGGATCTTCTACTATTCCCAA 58.798 40.000 6.38 0.00 34.92 4.12
252 253 0.582960 AAAAACTTCACGCGGGTACG 59.417 50.000 8.89 0.00 44.63 3.67
275 276 3.372897 TCAAATAAAGCATGGGCCATCA 58.627 40.909 18.16 0.00 42.56 3.07
293 294 4.323792 CCATCATTTCTCTACCCACACACT 60.324 45.833 0.00 0.00 0.00 3.55
299 300 2.628178 TCTCTACCCACACACTTCACAG 59.372 50.000 0.00 0.00 0.00 3.66
314 315 5.471456 CACTTCACAGTAGGCAATTCTTTCT 59.529 40.000 0.00 0.00 0.00 2.52
322 323 3.956744 AGGCAATTCTTTCTAGGTGTCC 58.043 45.455 0.00 0.00 0.00 4.02
326 327 4.336713 GCAATTCTTTCTAGGTGTCCATCC 59.663 45.833 0.00 0.00 0.00 3.51
396 397 5.932619 AATTCCTAACCTTTGGCATAACC 57.067 39.130 0.00 0.00 39.84 2.85
433 434 4.440112 GCTTCTTGCAACACTTTTGTACCT 60.440 41.667 0.00 0.00 42.31 3.08
438 439 3.129638 TGCAACACTTTTGTACCTTGTCC 59.870 43.478 0.00 0.00 33.55 4.02
522 523 2.920524 TCTTACCGTGAAGTTGCCAAA 58.079 42.857 0.00 0.00 0.00 3.28
557 558 2.353307 CCGCACACAACTACCATCACTA 60.353 50.000 0.00 0.00 0.00 2.74
565 566 6.257849 ACACAACTACCATCACTATAATTGCG 59.742 38.462 0.00 0.00 0.00 4.85
567 568 6.257849 ACAACTACCATCACTATAATTGCGTG 59.742 38.462 0.00 0.00 0.00 5.34
586 587 3.859961 CGTGTAGGTATGCTGCATATAGC 59.140 47.826 23.74 14.87 43.95 2.97
592 593 4.226846 AGGTATGCTGCATATAGCTTCCAT 59.773 41.667 23.74 5.68 45.94 3.41
597 598 5.181009 TGCTGCATATAGCTTCCATATCAC 58.819 41.667 0.00 0.00 45.94 3.06
609 610 3.527533 TCCATATCACGGTTGTACTTGC 58.472 45.455 0.00 0.00 0.00 4.01
611 612 3.531538 CATATCACGGTTGTACTTGCCT 58.468 45.455 0.00 0.00 0.00 4.75
612 613 4.442332 CCATATCACGGTTGTACTTGCCTA 60.442 45.833 0.00 0.00 0.00 3.93
620 621 4.039488 CGGTTGTACTTGCCTATGGGTATA 59.961 45.833 0.00 0.00 34.45 1.47
639 640 6.055588 GGTATACTGCATACAACTTCCACAT 58.944 40.000 2.25 0.00 41.26 3.21
640 641 6.202954 GGTATACTGCATACAACTTCCACATC 59.797 42.308 2.25 0.00 41.26 3.06
641 642 4.019792 ACTGCATACAACTTCCACATCA 57.980 40.909 0.00 0.00 0.00 3.07
642 643 4.592942 ACTGCATACAACTTCCACATCAT 58.407 39.130 0.00 0.00 0.00 2.45
643 644 5.012239 ACTGCATACAACTTCCACATCATT 58.988 37.500 0.00 0.00 0.00 2.57
644 645 5.124457 ACTGCATACAACTTCCACATCATTC 59.876 40.000 0.00 0.00 0.00 2.67
645 646 4.094739 TGCATACAACTTCCACATCATTCG 59.905 41.667 0.00 0.00 0.00 3.34
646 647 4.332543 GCATACAACTTCCACATCATTCGA 59.667 41.667 0.00 0.00 0.00 3.71
647 648 5.727791 GCATACAACTTCCACATCATTCGAC 60.728 44.000 0.00 0.00 0.00 4.20
648 649 4.008074 ACAACTTCCACATCATTCGACT 57.992 40.909 0.00 0.00 0.00 4.18
649 650 3.997021 ACAACTTCCACATCATTCGACTC 59.003 43.478 0.00 0.00 0.00 3.36
650 651 2.881074 ACTTCCACATCATTCGACTCG 58.119 47.619 0.00 0.00 0.00 4.18
651 652 2.492088 ACTTCCACATCATTCGACTCGA 59.508 45.455 0.00 0.00 0.00 4.04
711 712 0.904865 TCTCCATCCCACTTGACGCT 60.905 55.000 0.00 0.00 0.00 5.07
713 714 0.824109 TCCATCCCACTTGACGCTAG 59.176 55.000 0.00 0.00 0.00 3.42
719 720 2.161486 CACTTGACGCTAGCGAGGC 61.161 63.158 41.33 27.91 42.83 4.70
721 722 4.492160 TTGACGCTAGCGAGGCCG 62.492 66.667 41.33 13.84 42.83 6.13
740 742 1.241990 GGCGGGAAAGGAGAAACCAC 61.242 60.000 0.00 0.00 42.04 4.16
754 756 5.200368 AGAAACCACAAATGATTGGTGTC 57.800 39.130 11.48 4.60 45.84 3.67
755 757 4.942852 GAAACCACAAATGATTGGTGTCA 58.057 39.130 11.48 0.00 46.03 3.58
761 763 4.984161 CACAAATGATTGGTGTCAAGAACC 59.016 41.667 4.50 0.00 41.01 3.62
791 793 0.252375 ACGGCTAGGGTTTGGACCTA 60.252 55.000 0.00 0.00 45.75 3.08
793 795 0.177373 GGCTAGGGTTTGGACCTACG 59.823 60.000 0.00 0.00 45.75 3.51
794 796 0.900421 GCTAGGGTTTGGACCTACGT 59.100 55.000 0.00 0.00 45.75 3.57
804 806 1.489649 TGGACCTACGTTTTGTTGGGA 59.510 47.619 0.00 0.00 46.38 4.37
818 820 4.574674 TGTTGGGAGTTATGATGCTCTT 57.425 40.909 0.00 0.00 32.67 2.85
855 857 7.980062 TGCTTACATACGAGAATTTTGCATTA 58.020 30.769 0.00 0.00 0.00 1.90
887 892 8.707938 AATTTATTTTGGAGAACTAGCAATGC 57.292 30.769 0.00 0.00 0.00 3.56
927 932 2.036346 GCAAGAAGGCCAGAACAAATGT 59.964 45.455 5.01 0.00 0.00 2.71
991 3445 4.120946 ACTCTGAACTCTGAAGTACCCT 57.879 45.455 0.00 0.00 33.48 4.34
1270 3775 1.377202 GGACAGCCTTGGCGAATCA 60.377 57.895 5.95 0.00 30.88 2.57
1405 3910 0.316689 CGAACGGCAACTGGTTGTTC 60.317 55.000 13.85 9.33 42.31 3.18
1409 3914 1.225376 CGGCAACTGGTTGTTCGCTA 61.225 55.000 13.85 0.00 42.31 4.26
1539 4082 6.656632 TCTACTTCTTGATTCAGACAGTGT 57.343 37.500 0.00 0.00 0.00 3.55
1546 4089 6.625362 TCTTGATTCAGACAGTGTAGTGATC 58.375 40.000 8.29 5.70 0.00 2.92
1565 4108 7.341805 AGTGATCCTTATAGTGTGCTTGAAAT 58.658 34.615 0.00 0.00 0.00 2.17
1582 4125 1.209128 AATAGATTCAGTTCGCGCCG 58.791 50.000 0.00 0.00 0.00 6.46
1601 4145 0.512952 GTCCTGCGAATGACACACAC 59.487 55.000 0.00 0.00 0.00 3.82
1625 4169 2.418976 CTCATGTGGATGCTGAAGTGTG 59.581 50.000 0.00 0.00 0.00 3.82
1630 4174 1.364626 GGATGCTGAAGTGTGCTCCG 61.365 60.000 0.00 0.00 0.00 4.63
1635 4179 4.681978 GAAGTGTGCTCCGGCCGT 62.682 66.667 26.12 0.43 37.74 5.68
1657 4201 5.281727 GTTTCAGGCTTTAAACCAGAGTTG 58.718 41.667 9.94 0.61 35.97 3.16
1739 4286 8.418662 GTTCTAGGTTTTTACCATTGGAAAAGT 58.581 33.333 10.37 0.63 0.00 2.66
1825 4381 4.078639 CCAGTCTCATTGGGAAGGTATC 57.921 50.000 0.00 0.00 31.87 2.24
1873 4429 9.607988 TGTATCTACAACAATACAATTGGGTAG 57.392 33.333 10.83 18.16 35.87 3.18
1924 4480 7.272037 TGAAAAATAGGTTTTGAGTCTCACC 57.728 36.000 0.78 0.66 39.60 4.02
1959 4515 8.025445 GTCAATATGACAAAATGCTGTCTTTCT 58.975 33.333 5.65 0.00 46.22 2.52
1967 5050 0.318441 TGCTGTCTTTCTGGGAGACG 59.682 55.000 0.00 0.00 45.05 4.18
1976 5059 3.939837 CTGGGAGACGCGTGCATGT 62.940 63.158 20.70 0.00 0.00 3.21
1986 5069 3.194861 ACGCGTGCATGTAAGTGATAAT 58.805 40.909 12.93 0.00 0.00 1.28
2008 5091 6.699575 ATTGTTATAGTTGGCATGGTCTTC 57.300 37.500 0.00 0.00 0.00 2.87
2071 5154 3.130340 CCACGGGGAGAAAATAAATGGTG 59.870 47.826 0.00 0.00 35.59 4.17
2176 5305 2.573915 GCTTGGATATAGAGGGAAGGGG 59.426 54.545 0.00 0.00 0.00 4.79
2199 5328 7.298122 GGGCAAAGATATAATGTTCATACACG 58.702 38.462 0.00 0.00 37.03 4.49
2241 5370 8.345565 CAGGTTAATTATAAGACCTCAATGTGC 58.654 37.037 12.58 0.00 40.42 4.57
2264 5393 5.238650 GCTCTAAAAAGCACTGGTCAAGTAA 59.761 40.000 0.00 0.00 42.05 2.24
2273 5402 4.389374 CACTGGTCAAGTAATTGGACAGT 58.611 43.478 20.05 20.05 36.83 3.55
2287 5416 0.600255 GACAGTGTGTTGCGCCTACT 60.600 55.000 4.18 0.00 0.00 2.57
2396 5525 9.984190 GGTACTCCCTCTGTAAAGAAATATAAG 57.016 37.037 0.00 0.00 0.00 1.73
2495 5624 3.550842 GCAGTGCGGAAAATGAAGAAGTT 60.551 43.478 0.00 0.00 0.00 2.66
2498 5627 5.625311 CAGTGCGGAAAATGAAGAAGTTAAC 59.375 40.000 0.00 0.00 0.00 2.01
2544 5673 2.297315 GCTAAAGGCAGGCTTCAACTTT 59.703 45.455 10.16 4.22 41.35 2.66
2768 5898 0.322648 CCTGCTCAGACATGGACACA 59.677 55.000 0.00 0.00 0.00 3.72
2872 6142 3.179443 TGCATTCGGAGTGTCTTATCC 57.821 47.619 2.37 0.00 0.00 2.59
2948 6218 1.550976 ACTAACTGTAGTCAGCTGGCC 59.449 52.381 16.31 5.38 44.77 5.36
2956 6226 4.819761 TCAGCTGGCCGACGATGC 62.820 66.667 15.13 0.00 0.00 3.91
3303 6683 5.895636 TTGTGTTTTGAGTGACTCATTGT 57.104 34.783 16.98 0.00 40.39 2.71
3304 6684 5.895636 TGTGTTTTGAGTGACTCATTGTT 57.104 34.783 16.98 0.00 40.39 2.83
3305 6685 6.266168 TGTGTTTTGAGTGACTCATTGTTT 57.734 33.333 16.98 0.00 40.39 2.83
3306 6686 7.384439 TGTGTTTTGAGTGACTCATTGTTTA 57.616 32.000 16.98 0.00 40.39 2.01
3307 6687 7.471721 TGTGTTTTGAGTGACTCATTGTTTAG 58.528 34.615 16.98 0.00 40.39 1.85
3308 6688 7.120579 TGTGTTTTGAGTGACTCATTGTTTAGT 59.879 33.333 16.98 0.00 40.39 2.24
3309 6689 7.968405 GTGTTTTGAGTGACTCATTGTTTAGTT 59.032 33.333 16.98 0.00 40.39 2.24
3310 6690 8.519526 TGTTTTGAGTGACTCATTGTTTAGTTT 58.480 29.630 16.98 0.00 40.39 2.66
3311 6691 8.798153 GTTTTGAGTGACTCATTGTTTAGTTTG 58.202 33.333 16.98 0.00 40.39 2.93
3312 6692 7.624360 TTGAGTGACTCATTGTTTAGTTTGT 57.376 32.000 16.98 0.00 40.39 2.83
3313 6693 7.624360 TGAGTGACTCATTGTTTAGTTTGTT 57.376 32.000 11.93 0.00 35.39 2.83
3314 6694 8.050778 TGAGTGACTCATTGTTTAGTTTGTTT 57.949 30.769 11.93 0.00 35.39 2.83
3315 6695 8.519526 TGAGTGACTCATTGTTTAGTTTGTTTT 58.480 29.630 11.93 0.00 35.39 2.43
3316 6696 8.687824 AGTGACTCATTGTTTAGTTTGTTTTG 57.312 30.769 0.00 0.00 0.00 2.44
3317 6697 8.519526 AGTGACTCATTGTTTAGTTTGTTTTGA 58.480 29.630 0.00 0.00 0.00 2.69
3318 6698 9.134734 GTGACTCATTGTTTAGTTTGTTTTGAA 57.865 29.630 0.00 0.00 0.00 2.69
3319 6699 9.868277 TGACTCATTGTTTAGTTTGTTTTGAAT 57.132 25.926 0.00 0.00 0.00 2.57
3385 6765 2.223112 CCGCCATTCTCGACAAATTCAG 60.223 50.000 0.00 0.00 0.00 3.02
3459 6878 9.130312 GGCGTAAATTAGAATGACAGACTATAG 57.870 37.037 0.00 0.00 0.00 1.31
3488 6907 5.640783 CACTTATGCTTGATCAGAGTGTTCA 59.359 40.000 0.00 0.00 33.29 3.18
3638 7059 9.959749 CTTTCATATCCTACTTGAGTCTAAGTC 57.040 37.037 10.12 0.00 41.01 3.01
3653 7074 2.283145 AAGTCAGGAATGCACTGCTT 57.717 45.000 1.98 0.00 35.94 3.91
3714 7202 4.092116 GGCTAAAGAATGCCCTCAGTAT 57.908 45.455 0.00 0.00 43.11 2.12
3815 7304 8.611757 TCACACCATGAATCTAATATCGTTTTG 58.388 33.333 0.00 0.00 33.02 2.44
4053 7542 5.166013 ACCTTCTGATATACCTTACCCCA 57.834 43.478 0.00 0.00 0.00 4.96
4199 7688 1.148273 GTGTGCCCAGAACCAGTCA 59.852 57.895 0.00 0.00 0.00 3.41
4484 7973 1.478654 GGCAGGAAAAGGAACAGTGGA 60.479 52.381 0.00 0.00 0.00 4.02
4616 8105 4.415596 TCCTGTTTGACAATAGGCCAAAT 58.584 39.130 5.01 0.00 40.39 2.32
4663 8152 4.927782 TGGTGGCGGTGAGTGTGC 62.928 66.667 0.00 0.00 0.00 4.57
4707 8197 4.578105 TGGTTGTATGATAAATGATGCGCA 59.422 37.500 14.96 14.96 0.00 6.09
4839 8329 5.817816 TGTTCTGTTTTCTCTCTTCCTGTTC 59.182 40.000 0.00 0.00 0.00 3.18
4841 8331 6.240549 TCTGTTTTCTCTCTTCCTGTTCTT 57.759 37.500 0.00 0.00 0.00 2.52
4844 8334 7.066284 TCTGTTTTCTCTCTTCCTGTTCTTTTG 59.934 37.037 0.00 0.00 0.00 2.44
4845 8335 5.757850 TTTCTCTCTTCCTGTTCTTTTGC 57.242 39.130 0.00 0.00 0.00 3.68
4846 8336 4.696479 TCTCTCTTCCTGTTCTTTTGCT 57.304 40.909 0.00 0.00 0.00 3.91
4847 8337 4.384056 TCTCTCTTCCTGTTCTTTTGCTG 58.616 43.478 0.00 0.00 0.00 4.41
4866 8356 0.242017 GGTGAGTGTTGCTGCCATTC 59.758 55.000 0.00 0.00 0.00 2.67
4869 8359 1.926511 GAGTGTTGCTGCCATTCCGG 61.927 60.000 0.00 0.00 38.11 5.14
4925 8444 2.554032 CTCCCTTTCGTGCAATGTTTCT 59.446 45.455 0.00 0.00 0.00 2.52
4942 8461 4.102649 GTTTCTGTTTTGGAAGTTCCGTG 58.897 43.478 17.13 3.81 40.17 4.94
4962 8481 4.453751 GTGGGTTGTCTAGTTTGTTGGTA 58.546 43.478 0.00 0.00 0.00 3.25
5073 8592 8.519799 TGAAACAGGTCAATTCTTCTTTAGTT 57.480 30.769 0.00 0.00 0.00 2.24
5074 8593 8.621286 TGAAACAGGTCAATTCTTCTTTAGTTC 58.379 33.333 0.00 0.00 0.00 3.01
5075 8594 6.787085 ACAGGTCAATTCTTCTTTAGTTCG 57.213 37.500 0.00 0.00 0.00 3.95
5076 8595 5.179555 ACAGGTCAATTCTTCTTTAGTTCGC 59.820 40.000 0.00 0.00 0.00 4.70
5077 8596 5.409826 CAGGTCAATTCTTCTTTAGTTCGCT 59.590 40.000 0.00 0.00 0.00 4.93
5078 8597 5.639931 AGGTCAATTCTTCTTTAGTTCGCTC 59.360 40.000 0.00 0.00 0.00 5.03
5079 8598 5.163844 GGTCAATTCTTCTTTAGTTCGCTCC 60.164 44.000 0.00 0.00 0.00 4.70
5080 8599 4.935808 TCAATTCTTCTTTAGTTCGCTCCC 59.064 41.667 0.00 0.00 0.00 4.30
5081 8600 2.649331 TCTTCTTTAGTTCGCTCCCG 57.351 50.000 0.00 0.00 0.00 5.14
5082 8601 1.000145 CTTCTTTAGTTCGCTCCCGC 59.000 55.000 0.00 0.00 0.00 6.13
5115 8634 4.845580 CAGCCTAGCCACCGCCAG 62.846 72.222 0.00 0.00 34.57 4.85
5124 8643 3.964875 CACCGCCAGTGCCACAAC 61.965 66.667 0.00 0.00 40.28 3.32
5127 8646 3.663176 CGCCAGTGCCACAACCAG 61.663 66.667 0.00 0.00 0.00 4.00
5128 8647 3.982241 GCCAGTGCCACAACCAGC 61.982 66.667 0.00 0.00 0.00 4.85
5129 8648 3.297620 CCAGTGCCACAACCAGCC 61.298 66.667 0.00 0.00 0.00 4.85
5130 8649 2.519063 CAGTGCCACAACCAGCCA 60.519 61.111 0.00 0.00 0.00 4.75
5131 8650 2.519302 AGTGCCACAACCAGCCAC 60.519 61.111 0.00 0.00 0.00 5.01
5132 8651 3.605664 GTGCCACAACCAGCCACC 61.606 66.667 0.00 0.00 0.00 4.61
5133 8652 4.912395 TGCCACAACCAGCCACCC 62.912 66.667 0.00 0.00 0.00 4.61
5135 8654 3.902112 CCACAACCAGCCACCCCT 61.902 66.667 0.00 0.00 0.00 4.79
5136 8655 2.198426 CACAACCAGCCACCCCTT 59.802 61.111 0.00 0.00 0.00 3.95
5137 8656 1.903404 CACAACCAGCCACCCCTTC 60.903 63.158 0.00 0.00 0.00 3.46
5138 8657 2.084930 ACAACCAGCCACCCCTTCT 61.085 57.895 0.00 0.00 0.00 2.85
5139 8658 1.303643 CAACCAGCCACCCCTTCTC 60.304 63.158 0.00 0.00 0.00 2.87
5140 8659 2.539081 AACCAGCCACCCCTTCTCC 61.539 63.158 0.00 0.00 0.00 3.71
5141 8660 3.732849 CCAGCCACCCCTTCTCCC 61.733 72.222 0.00 0.00 0.00 4.30
5142 8661 3.732849 CAGCCACCCCTTCTCCCC 61.733 72.222 0.00 0.00 0.00 4.81
5143 8662 3.960313 AGCCACCCCTTCTCCCCT 61.960 66.667 0.00 0.00 0.00 4.79
5144 8663 2.941583 GCCACCCCTTCTCCCCTT 60.942 66.667 0.00 0.00 0.00 3.95
5145 8664 3.090765 CCACCCCTTCTCCCCTTG 58.909 66.667 0.00 0.00 0.00 3.61
5146 8665 2.356667 CACCCCTTCTCCCCTTGC 59.643 66.667 0.00 0.00 0.00 4.01
5147 8666 2.211279 ACCCCTTCTCCCCTTGCT 59.789 61.111 0.00 0.00 0.00 3.91
5148 8667 2.234296 ACCCCTTCTCCCCTTGCTG 61.234 63.158 0.00 0.00 0.00 4.41
5149 8668 2.044551 CCCTTCTCCCCTTGCTGC 60.045 66.667 0.00 0.00 0.00 5.25
5150 8669 2.044551 CCTTCTCCCCTTGCTGCC 60.045 66.667 0.00 0.00 0.00 4.85
5151 8670 2.610519 CCTTCTCCCCTTGCTGCCT 61.611 63.158 0.00 0.00 0.00 4.75
5152 8671 1.378250 CTTCTCCCCTTGCTGCCTG 60.378 63.158 0.00 0.00 0.00 4.85
5153 8672 3.574074 TTCTCCCCTTGCTGCCTGC 62.574 63.158 0.00 0.00 43.25 4.85
5209 8728 2.123683 CAGCGAGGCCCTCTCCTA 60.124 66.667 9.52 0.00 39.30 2.94
5210 8729 2.123640 AGCGAGGCCCTCTCCTAC 60.124 66.667 9.52 0.00 39.30 3.18
5211 8730 2.123640 GCGAGGCCCTCTCCTACT 60.124 66.667 9.52 0.00 39.30 2.57
5212 8731 2.197605 GCGAGGCCCTCTCCTACTC 61.198 68.421 9.52 0.00 39.30 2.59
5213 8732 1.529713 CGAGGCCCTCTCCTACTCC 60.530 68.421 9.52 0.00 39.30 3.85
5214 8733 1.152419 GAGGCCCTCTCCTACTCCC 60.152 68.421 2.64 0.00 36.38 4.30
5215 8734 2.522193 GGCCCTCTCCTACTCCCG 60.522 72.222 0.00 0.00 0.00 5.14
5216 8735 3.228017 GCCCTCTCCTACTCCCGC 61.228 72.222 0.00 0.00 0.00 6.13
5217 8736 2.604152 CCCTCTCCTACTCCCGCT 59.396 66.667 0.00 0.00 0.00 5.52
5218 8737 1.075896 CCCTCTCCTACTCCCGCTT 60.076 63.158 0.00 0.00 0.00 4.68
5219 8738 1.395826 CCCTCTCCTACTCCCGCTTG 61.396 65.000 0.00 0.00 0.00 4.01
5220 8739 1.395826 CCTCTCCTACTCCCGCTTGG 61.396 65.000 0.00 0.00 0.00 3.61
5221 8740 0.395862 CTCTCCTACTCCCGCTTGGA 60.396 60.000 0.00 0.00 42.41 3.53
5251 8770 2.202892 GGACCGGCCGCTTAGAAG 60.203 66.667 22.85 6.71 0.00 2.85
5252 8771 2.202892 GACCGGCCGCTTAGAAGG 60.203 66.667 22.85 5.83 0.00 3.46
5253 8772 2.682494 ACCGGCCGCTTAGAAGGA 60.682 61.111 22.85 0.00 0.00 3.36
5254 8773 2.107141 CCGGCCGCTTAGAAGGAG 59.893 66.667 22.85 0.00 0.00 3.69
5255 8774 2.586357 CGGCCGCTTAGAAGGAGC 60.586 66.667 14.67 0.00 36.79 4.70
5256 8775 2.904131 GGCCGCTTAGAAGGAGCT 59.096 61.111 0.00 0.00 37.99 4.09
5257 8776 1.222113 GGCCGCTTAGAAGGAGCTT 59.778 57.895 0.00 0.00 37.99 3.74
5258 8777 0.464452 GGCCGCTTAGAAGGAGCTTA 59.536 55.000 0.00 0.00 37.99 3.09
5259 8778 1.539280 GGCCGCTTAGAAGGAGCTTAG 60.539 57.143 0.00 0.00 37.99 2.18
5260 8779 1.539280 GCCGCTTAGAAGGAGCTTAGG 60.539 57.143 0.00 0.00 37.99 2.69
5261 8780 1.539280 CCGCTTAGAAGGAGCTTAGGC 60.539 57.143 0.00 0.00 37.99 3.93
5262 8781 1.859383 GCTTAGAAGGAGCTTAGGCG 58.141 55.000 0.00 0.00 44.37 5.52
5263 8782 1.859383 CTTAGAAGGAGCTTAGGCGC 58.141 55.000 0.00 0.00 44.37 6.53
5269 8788 3.205536 GAGCTTAGGCGCCTTGGC 61.206 66.667 37.74 34.35 44.37 4.52
5300 8819 4.694233 CAGTGAGGCAGCGCAGGT 62.694 66.667 11.47 0.00 41.48 4.00
5310 8829 4.715523 GCGCAGGTGGTAGGGCAA 62.716 66.667 0.30 0.00 42.51 4.52
5311 8830 2.436646 CGCAGGTGGTAGGGCAAG 60.437 66.667 0.00 0.00 0.00 4.01
5312 8831 2.751837 GCAGGTGGTAGGGCAAGC 60.752 66.667 0.00 0.00 0.00 4.01
5313 8832 2.756400 CAGGTGGTAGGGCAAGCA 59.244 61.111 0.00 0.00 0.00 3.91
5314 8833 1.304282 CAGGTGGTAGGGCAAGCAT 59.696 57.895 0.00 0.00 0.00 3.79
5315 8834 1.033746 CAGGTGGTAGGGCAAGCATG 61.034 60.000 0.00 0.00 0.00 4.06
5316 8835 1.754234 GGTGGTAGGGCAAGCATGG 60.754 63.158 0.00 0.00 0.00 3.66
5324 8843 3.818787 GCAAGCATGGCGGGACTG 61.819 66.667 0.00 0.00 0.00 3.51
5325 8844 3.136123 CAAGCATGGCGGGACTGG 61.136 66.667 0.00 0.00 0.00 4.00
5326 8845 4.431131 AAGCATGGCGGGACTGGG 62.431 66.667 0.00 0.00 0.00 4.45
5404 8923 3.706373 GGGCAAGCTCGGACCTGA 61.706 66.667 2.97 0.00 0.00 3.86
5405 8924 2.435059 GGCAAGCTCGGACCTGAC 60.435 66.667 0.00 0.00 0.00 3.51
5406 8925 2.343758 GCAAGCTCGGACCTGACA 59.656 61.111 0.00 0.00 0.00 3.58
5407 8926 2.029844 GCAAGCTCGGACCTGACAC 61.030 63.158 0.00 0.00 0.00 3.67
5408 8927 1.734477 CAAGCTCGGACCTGACACG 60.734 63.158 0.00 0.00 0.00 4.49
5409 8928 3.575351 AAGCTCGGACCTGACACGC 62.575 63.158 0.00 0.00 0.00 5.34
5441 8960 2.434884 CGGCGTGAGGTGATGCTT 60.435 61.111 0.00 0.00 0.00 3.91
5442 8961 2.456119 CGGCGTGAGGTGATGCTTC 61.456 63.158 0.00 0.00 0.00 3.86
5443 8962 2.456119 GGCGTGAGGTGATGCTTCG 61.456 63.158 0.00 0.00 0.00 3.79
5444 8963 1.446099 GCGTGAGGTGATGCTTCGA 60.446 57.895 0.00 0.00 0.00 3.71
5445 8964 1.687494 GCGTGAGGTGATGCTTCGAC 61.687 60.000 0.00 0.00 0.00 4.20
5446 8965 0.109086 CGTGAGGTGATGCTTCGACT 60.109 55.000 0.00 0.00 0.00 4.18
5447 8966 1.634702 GTGAGGTGATGCTTCGACTC 58.365 55.000 13.23 13.23 0.00 3.36
5448 8967 0.171231 TGAGGTGATGCTTCGACTCG 59.829 55.000 14.43 0.00 32.74 4.18
5449 8968 0.526524 GAGGTGATGCTTCGACTCGG 60.527 60.000 0.00 0.00 0.00 4.63
5450 8969 1.519455 GGTGATGCTTCGACTCGGG 60.519 63.158 0.00 0.00 0.00 5.14
5451 8970 1.511305 GTGATGCTTCGACTCGGGA 59.489 57.895 0.00 0.00 0.00 5.14
5452 8971 0.103208 GTGATGCTTCGACTCGGGAT 59.897 55.000 0.00 0.00 0.00 3.85
5457 8976 2.682136 TTCGACTCGGGATGGCCA 60.682 61.111 8.56 8.56 35.15 5.36
5564 9083 1.502640 CGTGTCCGGAGTCAGAGAC 59.497 63.158 3.06 0.00 0.00 3.36
5579 9098 1.000955 AGAGACGGCGACACTTTCAAT 59.999 47.619 16.62 0.00 0.00 2.57
5581 9100 1.144969 GACGGCGACACTTTCAATCA 58.855 50.000 16.62 0.00 0.00 2.57
5603 9122 2.035832 CCGTTTCCTTCTTGTTGGCATT 59.964 45.455 0.00 0.00 0.00 3.56
5634 9153 3.244215 ACTCTCAGTTCCAATCTTCGCAA 60.244 43.478 0.00 0.00 0.00 4.85
5721 9240 2.041115 GGGCTTCGTCTTTGGAGCC 61.041 63.158 4.41 4.41 41.32 4.70
5753 9272 0.323629 GTGGGACCGATGGAAGTTGA 59.676 55.000 0.00 0.00 0.00 3.18
5794 9313 0.473755 TATGGCAACGATGATGGGCT 59.526 50.000 0.00 0.00 42.51 5.19
5806 9325 1.002257 ATGGGCTTGTGCGATGTCA 60.002 52.632 0.00 0.00 40.82 3.58
5813 9332 0.313987 TTGTGCGATGTCAGAGACGT 59.686 50.000 0.00 0.00 34.95 4.34
5894 9419 1.300697 GTTGCGGTGAAGTCGGAGT 60.301 57.895 0.00 0.00 0.00 3.85
5990 9516 3.369471 CCTTGCATAGTTCTCCTTCGGAA 60.369 47.826 0.00 0.00 0.00 4.30
6028 9554 1.064758 AGTTGTGTTGTCCTTGGAGCA 60.065 47.619 0.00 0.00 0.00 4.26
6033 9559 0.108585 GTTGTCCTTGGAGCAGGTGA 59.891 55.000 0.00 0.00 35.15 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.479323 GACGCCTACATGGACCTAACA 59.521 52.381 0.00 0.00 38.35 2.41
1 2 1.479323 TGACGCCTACATGGACCTAAC 59.521 52.381 0.00 0.00 38.35 2.34
2 3 1.855295 TGACGCCTACATGGACCTAA 58.145 50.000 0.00 0.00 38.35 2.69
25 26 1.748493 GCAAGCATCGGTTAAATGGGA 59.252 47.619 0.00 0.00 0.00 4.37
39 40 0.867746 GTCATCGAACAGTGCAAGCA 59.132 50.000 0.00 0.00 0.00 3.91
45 46 2.489722 TGGAGAGAGTCATCGAACAGTG 59.510 50.000 0.00 0.00 0.00 3.66
55 56 4.558697 CGTGTGTTGTTATGGAGAGAGTCA 60.559 45.833 0.00 0.00 0.00 3.41
63 64 6.460781 AGAATAGAACGTGTGTTGTTATGGA 58.539 36.000 0.00 0.00 38.78 3.41
94 95 2.965572 ATGTGGTATTGTTGGCATGC 57.034 45.000 9.90 9.90 0.00 4.06
152 153 5.932455 TCATGAGCAATAGATGTGATGGAA 58.068 37.500 0.00 0.00 0.00 3.53
157 158 7.277396 TCTTGATTCATGAGCAATAGATGTGA 58.723 34.615 11.88 3.93 0.00 3.58
205 206 6.385443 TGGGAATAGTAGAAGATCCTCACAT 58.615 40.000 0.00 0.00 0.00 3.21
245 246 2.004017 TGCTTTATTTGAGCGTACCCG 58.996 47.619 0.00 0.00 43.02 5.28
246 247 3.243068 CCATGCTTTATTTGAGCGTACCC 60.243 47.826 0.00 0.00 43.02 3.69
252 253 1.481772 TGGCCCATGCTTTATTTGAGC 59.518 47.619 0.00 0.00 40.53 4.26
275 276 4.102524 TGTGAAGTGTGTGGGTAGAGAAAT 59.897 41.667 0.00 0.00 0.00 2.17
293 294 6.173339 CCTAGAAAGAATTGCCTACTGTGAA 58.827 40.000 0.00 0.00 0.00 3.18
299 300 4.876679 GGACACCTAGAAAGAATTGCCTAC 59.123 45.833 0.00 0.00 0.00 3.18
314 315 1.066430 GTGCTTTCGGATGGACACCTA 60.066 52.381 0.00 0.00 0.00 3.08
322 323 2.223456 TGTTGTGTTGTGCTTTCGGATG 60.223 45.455 0.00 0.00 0.00 3.51
326 327 2.118683 CCATGTTGTGTTGTGCTTTCG 58.881 47.619 0.00 0.00 0.00 3.46
396 397 4.936396 CAAGAAGCTTTGCAAACTTACG 57.064 40.909 19.91 8.48 0.00 3.18
433 434 0.526211 CATCGTGAGGAGACGGACAA 59.474 55.000 0.00 0.00 39.88 3.18
438 439 0.526524 GCCTTCATCGTGAGGAGACG 60.527 60.000 0.00 0.00 40.83 4.18
539 540 7.409697 GCAATTATAGTGATGGTAGTTGTGTG 58.590 38.462 0.00 0.00 0.00 3.82
540 541 6.257849 CGCAATTATAGTGATGGTAGTTGTGT 59.742 38.462 0.00 0.00 0.00 3.72
557 558 3.498397 GCAGCATACCTACACGCAATTAT 59.502 43.478 0.00 0.00 0.00 1.28
565 566 5.078411 AGCTATATGCAGCATACCTACAC 57.922 43.478 17.64 4.70 44.35 2.90
567 568 5.112686 GGAAGCTATATGCAGCATACCTAC 58.887 45.833 17.64 7.70 44.35 3.18
586 587 4.034048 GCAAGTACAACCGTGATATGGAAG 59.966 45.833 0.00 0.00 0.00 3.46
592 593 4.442332 CCATAGGCAAGTACAACCGTGATA 60.442 45.833 0.00 0.00 0.00 2.15
597 598 1.065709 ACCCATAGGCAAGTACAACCG 60.066 52.381 0.00 0.00 36.11 4.44
609 610 6.360370 AGTTGTATGCAGTATACCCATAGG 57.640 41.667 11.90 0.00 40.80 2.57
611 612 6.327887 TGGAAGTTGTATGCAGTATACCCATA 59.672 38.462 6.23 4.68 40.80 2.74
612 613 5.131977 TGGAAGTTGTATGCAGTATACCCAT 59.868 40.000 6.23 10.42 40.80 4.00
620 621 4.019792 TGATGTGGAAGTTGTATGCAGT 57.980 40.909 0.00 0.00 0.00 4.40
639 640 5.624344 AGAGTAGTTTTCGAGTCGAATGA 57.376 39.130 27.26 16.61 45.28 2.57
640 641 6.250951 GGTTAGAGTAGTTTTCGAGTCGAATG 59.749 42.308 27.26 0.00 45.28 2.67
641 642 6.150809 AGGTTAGAGTAGTTTTCGAGTCGAAT 59.849 38.462 27.26 15.86 45.28 3.34
642 643 5.471456 AGGTTAGAGTAGTTTTCGAGTCGAA 59.529 40.000 23.54 23.54 44.28 3.71
643 644 4.999950 AGGTTAGAGTAGTTTTCGAGTCGA 59.000 41.667 12.09 12.09 31.64 4.20
644 645 5.294050 AGGTTAGAGTAGTTTTCGAGTCG 57.706 43.478 6.09 6.09 31.64 4.18
645 646 7.138692 TGTAGGTTAGAGTAGTTTTCGAGTC 57.861 40.000 0.00 0.00 0.00 3.36
646 647 7.516198 TTGTAGGTTAGAGTAGTTTTCGAGT 57.484 36.000 0.00 0.00 0.00 4.18
647 648 8.081025 AGTTTGTAGGTTAGAGTAGTTTTCGAG 58.919 37.037 0.00 0.00 0.00 4.04
648 649 7.945134 AGTTTGTAGGTTAGAGTAGTTTTCGA 58.055 34.615 0.00 0.00 0.00 3.71
649 650 8.081025 AGAGTTTGTAGGTTAGAGTAGTTTTCG 58.919 37.037 0.00 0.00 0.00 3.46
719 720 2.038837 GTTTCTCCTTTCCCGCCGG 61.039 63.158 0.00 0.00 0.00 6.13
721 722 1.074248 TGGTTTCTCCTTTCCCGCC 59.926 57.895 0.00 0.00 37.07 6.13
722 723 0.536460 TGTGGTTTCTCCTTTCCCGC 60.536 55.000 0.00 0.00 37.07 6.13
723 724 1.975660 TTGTGGTTTCTCCTTTCCCG 58.024 50.000 0.00 0.00 37.07 5.14
740 742 4.984161 GTGGTTCTTGACACCAATCATTTG 59.016 41.667 0.00 0.00 46.15 2.32
754 756 1.260561 CGTCGGAAGTTGTGGTTCTTG 59.739 52.381 0.00 0.00 0.00 3.02
755 757 1.578583 CGTCGGAAGTTGTGGTTCTT 58.421 50.000 0.00 0.00 0.00 2.52
761 763 0.736325 CCTAGCCGTCGGAAGTTGTG 60.736 60.000 17.49 0.00 0.00 3.33
791 793 4.320935 GCATCATAACTCCCAACAAAACGT 60.321 41.667 0.00 0.00 0.00 3.99
793 795 5.183904 AGAGCATCATAACTCCCAACAAAAC 59.816 40.000 0.00 0.00 37.82 2.43
794 796 5.324409 AGAGCATCATAACTCCCAACAAAA 58.676 37.500 0.00 0.00 37.82 2.44
828 830 6.314018 TGCAAAATTCTCGTATGTAAGCAAG 58.686 36.000 0.00 0.00 0.00 4.01
862 864 8.313292 TGCATTGCTAGTTCTCCAAAATAAATT 58.687 29.630 10.49 0.00 0.00 1.82
887 892 2.738314 TGCACGATTTGAGATCAGTGTG 59.262 45.455 0.00 0.00 32.74 3.82
927 932 4.676799 TCTTAAGAGGGAGGAAGAGTGA 57.323 45.455 0.00 0.00 0.00 3.41
991 3445 1.072266 ATGGAAATATGGGCCGGCTA 58.928 50.000 28.56 16.71 0.00 3.93
1149 3654 2.721167 CGAGCCGTCTGATTGGGGA 61.721 63.158 1.77 0.00 0.00 4.81
1252 3757 1.377202 TGATTCGCCAAGGCTGTCC 60.377 57.895 9.73 0.00 39.32 4.02
1270 3775 3.537874 GGCGCCTATCAGGACCGT 61.538 66.667 22.15 0.00 37.67 4.83
1397 3902 0.912487 AGGGGGATAGCGAACAACCA 60.912 55.000 0.00 0.00 0.00 3.67
1405 3910 1.974343 CGGAGAGAGGGGGATAGCG 60.974 68.421 0.00 0.00 0.00 4.26
1409 3914 0.340208 AGAAACGGAGAGAGGGGGAT 59.660 55.000 0.00 0.00 0.00 3.85
1539 4082 7.418337 TTCAAGCACACTATAAGGATCACTA 57.582 36.000 0.00 0.00 0.00 2.74
1546 4089 9.330063 TGAATCTATTTCAAGCACACTATAAGG 57.670 33.333 0.00 0.00 41.38 2.69
1565 4108 0.524816 GACGGCGCGAACTGAATCTA 60.525 55.000 12.10 0.00 0.00 1.98
1582 4125 0.512952 GTGTGTGTCATTCGCAGGAC 59.487 55.000 0.00 0.00 37.22 3.85
1601 4145 3.079578 ACTTCAGCATCCACATGAGTTG 58.920 45.455 0.00 0.00 30.57 3.16
1611 4155 1.364626 CGGAGCACACTTCAGCATCC 61.365 60.000 0.00 0.00 0.00 3.51
1635 4179 4.202111 GCAACTCTGGTTTAAAGCCTGAAA 60.202 41.667 14.49 0.00 34.36 2.69
1657 4201 4.338879 AGATAATGGGATAATGCACCAGC 58.661 43.478 0.00 0.00 37.75 4.85
1718 4264 7.335673 CACAAACTTTTCCAATGGTAAAAACCT 59.664 33.333 5.61 0.00 0.00 3.50
1719 4265 7.468441 CACAAACTTTTCCAATGGTAAAAACC 58.532 34.615 5.61 0.00 0.00 3.27
1723 4269 5.119694 GGCACAAACTTTTCCAATGGTAAA 58.880 37.500 4.07 4.07 0.00 2.01
1825 4381 1.442769 ATCTACACCTTGCAACTGCG 58.557 50.000 0.00 0.00 45.83 5.18
1871 4427 4.635765 CAGGCTGCAGCTAAAACATTACTA 59.364 41.667 35.82 0.00 41.70 1.82
1872 4428 3.441572 CAGGCTGCAGCTAAAACATTACT 59.558 43.478 35.82 18.49 41.70 2.24
1873 4429 3.762779 CAGGCTGCAGCTAAAACATTAC 58.237 45.455 35.82 16.51 41.70 1.89
1959 4515 2.161078 TTACATGCACGCGTCTCCCA 62.161 55.000 9.86 4.66 0.00 4.37
1967 5050 4.908736 ACAATTATCACTTACATGCACGC 58.091 39.130 0.00 0.00 0.00 5.34
1986 5069 4.947388 GGAAGACCATGCCAACTATAACAA 59.053 41.667 0.00 0.00 35.97 2.83
2008 5091 7.112984 GGCGTTTTAAATTTTCTATATCAGCGG 59.887 37.037 0.00 0.00 0.00 5.52
2045 5128 5.451798 CCATTTATTTTCTCCCCGTGGATTG 60.452 44.000 0.00 0.00 40.80 2.67
2071 5154 8.505625 TGAAAGATGGCATTTTAATTTTGCTTC 58.494 29.630 0.00 0.00 36.62 3.86
2176 5305 7.351981 TGCGTGTATGAACATTATATCTTTGC 58.648 34.615 0.00 0.00 38.08 3.68
2214 5343 9.396022 CACATTGAGGTCTTATAATTAACCTGT 57.604 33.333 10.65 2.22 42.15 4.00
2215 5344 8.345565 GCACATTGAGGTCTTATAATTAACCTG 58.654 37.037 10.65 1.70 42.15 4.00
2241 5370 6.861065 TTACTTGACCAGTGCTTTTTAGAG 57.139 37.500 0.00 0.00 35.97 2.43
2264 5393 1.654220 GCGCAACACACTGTCCAAT 59.346 52.632 0.30 0.00 0.00 3.16
2273 5402 0.963225 TAGTCAGTAGGCGCAACACA 59.037 50.000 10.83 0.00 0.00 3.72
2287 5416 3.808466 CTTGCCTAGCATGACTAGTCA 57.192 47.619 27.07 27.07 46.10 3.41
2311 5440 1.489481 CTAGACACCATCCTCCTGCA 58.511 55.000 0.00 0.00 0.00 4.41
2495 5624 5.252969 AGCGTCAATACTCAATACCGTTA 57.747 39.130 0.00 0.00 0.00 3.18
2498 5627 5.331309 CGTTTAGCGTCAATACTCAATACCG 60.331 44.000 0.00 0.00 35.54 4.02
2530 5659 1.809547 GAGGAGAAAGTTGAAGCCTGC 59.190 52.381 0.00 0.00 0.00 4.85
2706 5836 0.037326 GACACTCCGAATGCAGGTCA 60.037 55.000 0.00 0.00 0.00 4.02
2872 6142 0.523966 TGCCCGAAACTATTTTGCCG 59.476 50.000 0.00 0.00 0.00 5.69
3313 6693 9.748708 CACAGAAAAGGAACTGAATAATTCAAA 57.251 29.630 0.00 0.00 40.86 2.69
3314 6694 9.130661 TCACAGAAAAGGAACTGAATAATTCAA 57.869 29.630 0.00 0.00 40.86 2.69
3315 6695 8.690203 TCACAGAAAAGGAACTGAATAATTCA 57.310 30.769 0.00 0.00 40.86 2.57
3316 6696 9.780413 GATCACAGAAAAGGAACTGAATAATTC 57.220 33.333 0.00 0.00 40.86 2.17
3317 6697 9.525826 AGATCACAGAAAAGGAACTGAATAATT 57.474 29.630 0.00 0.00 40.86 1.40
3318 6698 9.171877 GAGATCACAGAAAAGGAACTGAATAAT 57.828 33.333 0.00 0.00 40.86 1.28
3319 6699 8.378565 AGAGATCACAGAAAAGGAACTGAATAA 58.621 33.333 0.00 0.00 40.86 1.40
3320 6700 7.821359 CAGAGATCACAGAAAAGGAACTGAATA 59.179 37.037 0.00 0.00 40.86 1.75
3321 6701 6.654161 CAGAGATCACAGAAAAGGAACTGAAT 59.346 38.462 0.00 0.00 40.86 2.57
3322 6702 5.994054 CAGAGATCACAGAAAAGGAACTGAA 59.006 40.000 0.00 0.00 40.86 3.02
3323 6703 5.305386 TCAGAGATCACAGAAAAGGAACTGA 59.695 40.000 0.00 0.00 40.86 3.41
3324 6704 5.545588 TCAGAGATCACAGAAAAGGAACTG 58.454 41.667 0.00 0.00 40.86 3.16
3326 6706 6.072783 CCTTTCAGAGATCACAGAAAAGGAAC 60.073 42.308 17.92 0.00 30.49 3.62
3385 6765 0.602905 ACCAGCGCAAACCAGTACTC 60.603 55.000 11.47 0.00 0.00 2.59
3459 6878 4.517285 TCTGATCAAGCATAAGTGGGTTC 58.483 43.478 0.00 0.00 0.00 3.62
3580 7001 6.408035 TGTTGCTTTATACGGGTGAAAGATA 58.592 36.000 10.46 0.03 32.94 1.98
3638 7059 1.738350 CTGAGAAGCAGTGCATTCCTG 59.262 52.381 19.20 11.23 39.85 3.86
3815 7304 4.142447 ACGTGACTGTATCCTGTGTGTATC 60.142 45.833 0.00 0.00 0.00 2.24
4053 7542 5.397221 CCTCATCAATGTACAGATCAGGGTT 60.397 44.000 7.03 0.00 29.78 4.11
4199 7688 3.715648 AGATAGATGTCCCAGTTCCCT 57.284 47.619 0.00 0.00 0.00 4.20
4417 7906 7.713507 GGTAGTATGTGTTATTGTTGCTGGATA 59.286 37.037 0.00 0.00 0.00 2.59
4597 8086 3.260380 CCCATTTGGCCTATTGTCAAACA 59.740 43.478 3.32 0.00 33.91 2.83
4663 8152 1.589803 AACCTTTCCACGGTTTCTCG 58.410 50.000 0.00 0.00 41.83 4.04
4707 8197 4.819630 TCCGCACAAAAGACACTAGAAAAT 59.180 37.500 0.00 0.00 0.00 1.82
4748 8238 0.743688 AGCGTTGTTGCAACATCCAA 59.256 45.000 31.48 15.13 38.95 3.53
4839 8329 1.406539 AGCAACACTCACCAGCAAAAG 59.593 47.619 0.00 0.00 0.00 2.27
4841 8331 0.740149 CAGCAACACTCACCAGCAAA 59.260 50.000 0.00 0.00 0.00 3.68
4844 8334 2.641559 GCAGCAACACTCACCAGC 59.358 61.111 0.00 0.00 0.00 4.85
4845 8335 0.892358 ATGGCAGCAACACTCACCAG 60.892 55.000 0.00 0.00 35.58 4.00
4846 8336 0.467844 AATGGCAGCAACACTCACCA 60.468 50.000 0.00 0.00 36.35 4.17
4847 8337 0.242017 GAATGGCAGCAACACTCACC 59.758 55.000 0.00 0.00 0.00 4.02
4866 8356 2.052104 GCAAACCATCTTCCCCCGG 61.052 63.158 0.00 0.00 0.00 5.73
4869 8359 4.863415 TGGCAAACCATCTTCCCC 57.137 55.556 0.00 0.00 42.67 4.81
4925 8444 1.341187 ACCCACGGAACTTCCAAAACA 60.341 47.619 8.59 0.00 35.91 2.83
4942 8461 3.817084 GGTACCAACAAACTAGACAACCC 59.183 47.826 7.15 0.00 0.00 4.11
4962 8481 6.610075 ACAATGGCAATTCTTAAGATTGGT 57.390 33.333 19.96 11.55 0.00 3.67
5088 8607 4.906792 CTAGGCTGCGCTCCTGGC 62.907 72.222 25.23 16.98 38.08 4.85
5089 8608 4.906792 GCTAGGCTGCGCTCCTGG 62.907 72.222 25.23 23.45 35.21 4.45
5090 8609 4.906792 GGCTAGGCTGCGCTCCTG 62.907 72.222 25.23 17.61 35.21 3.86
5098 8617 4.845580 CTGGCGGTGGCTAGGCTG 62.846 72.222 18.18 8.48 43.43 4.85
5110 8629 3.663176 CTGGTTGTGGCACTGGCG 61.663 66.667 19.83 0.00 42.47 5.69
5111 8630 3.982241 GCTGGTTGTGGCACTGGC 61.982 66.667 19.83 11.37 40.13 4.85
5112 8631 3.297620 GGCTGGTTGTGGCACTGG 61.298 66.667 19.83 5.48 0.00 4.00
5113 8632 2.519063 TGGCTGGTTGTGGCACTG 60.519 61.111 19.83 5.15 35.04 3.66
5116 8635 4.912395 GGGTGGCTGGTTGTGGCA 62.912 66.667 0.00 0.00 37.66 4.92
5118 8637 3.451056 AAGGGGTGGCTGGTTGTGG 62.451 63.158 0.00 0.00 0.00 4.17
5119 8638 1.903404 GAAGGGGTGGCTGGTTGTG 60.903 63.158 0.00 0.00 0.00 3.33
5120 8639 2.069165 GAGAAGGGGTGGCTGGTTGT 62.069 60.000 0.00 0.00 0.00 3.32
5121 8640 1.303643 GAGAAGGGGTGGCTGGTTG 60.304 63.158 0.00 0.00 0.00 3.77
5122 8641 2.539081 GGAGAAGGGGTGGCTGGTT 61.539 63.158 0.00 0.00 0.00 3.67
5123 8642 2.936032 GGAGAAGGGGTGGCTGGT 60.936 66.667 0.00 0.00 0.00 4.00
5124 8643 3.732849 GGGAGAAGGGGTGGCTGG 61.733 72.222 0.00 0.00 0.00 4.85
5125 8644 3.732849 GGGGAGAAGGGGTGGCTG 61.733 72.222 0.00 0.00 0.00 4.85
5126 8645 3.523681 AAGGGGAGAAGGGGTGGCT 62.524 63.158 0.00 0.00 0.00 4.75
5127 8646 2.941583 AAGGGGAGAAGGGGTGGC 60.942 66.667 0.00 0.00 0.00 5.01
5128 8647 3.090765 CAAGGGGAGAAGGGGTGG 58.909 66.667 0.00 0.00 0.00 4.61
5129 8648 2.234296 AGCAAGGGGAGAAGGGGTG 61.234 63.158 0.00 0.00 0.00 4.61
5130 8649 2.211279 AGCAAGGGGAGAAGGGGT 59.789 61.111 0.00 0.00 0.00 4.95
5131 8650 2.679716 CAGCAAGGGGAGAAGGGG 59.320 66.667 0.00 0.00 0.00 4.79
5132 8651 2.044551 GCAGCAAGGGGAGAAGGG 60.045 66.667 0.00 0.00 0.00 3.95
5133 8652 2.044551 GGCAGCAAGGGGAGAAGG 60.045 66.667 0.00 0.00 0.00 3.46
5134 8653 1.378250 CAGGCAGCAAGGGGAGAAG 60.378 63.158 0.00 0.00 0.00 2.85
5135 8654 2.759114 CAGGCAGCAAGGGGAGAA 59.241 61.111 0.00 0.00 0.00 2.87
5136 8655 4.039092 GCAGGCAGCAAGGGGAGA 62.039 66.667 0.00 0.00 44.79 3.71
5192 8711 2.123683 TAGGAGAGGGCCTCGCTG 60.124 66.667 31.90 0.00 42.89 5.18
5193 8712 2.123640 GTAGGAGAGGGCCTCGCT 60.124 66.667 31.90 21.38 42.89 4.93
5194 8713 2.123640 AGTAGGAGAGGGCCTCGC 60.124 66.667 27.02 27.02 42.89 5.03
5195 8714 1.529713 GGAGTAGGAGAGGGCCTCG 60.530 68.421 27.11 0.00 42.89 4.63
5196 8715 1.152419 GGGAGTAGGAGAGGGCCTC 60.152 68.421 26.42 26.42 39.50 4.70
5197 8716 3.029580 GGGAGTAGGAGAGGGCCT 58.970 66.667 5.25 5.25 42.15 5.19
5198 8717 2.522193 CGGGAGTAGGAGAGGGCC 60.522 72.222 0.00 0.00 0.00 5.80
5199 8718 3.228017 GCGGGAGTAGGAGAGGGC 61.228 72.222 0.00 0.00 0.00 5.19
5200 8719 1.075896 AAGCGGGAGTAGGAGAGGG 60.076 63.158 0.00 0.00 0.00 4.30
5201 8720 1.395826 CCAAGCGGGAGTAGGAGAGG 61.396 65.000 0.00 0.00 40.01 3.69
5202 8721 0.395862 TCCAAGCGGGAGTAGGAGAG 60.396 60.000 0.00 0.00 42.15 3.20
5203 8722 1.695465 TCCAAGCGGGAGTAGGAGA 59.305 57.895 0.00 0.00 42.15 3.71
5204 8723 4.356979 TCCAAGCGGGAGTAGGAG 57.643 61.111 0.00 0.00 42.15 3.69
5234 8753 2.202892 CTTCTAAGCGGCCGGTCC 60.203 66.667 32.52 12.34 0.00 4.46
5235 8754 2.202892 CCTTCTAAGCGGCCGGTC 60.203 66.667 32.52 13.22 0.00 4.79
5236 8755 2.682494 TCCTTCTAAGCGGCCGGT 60.682 61.111 26.97 26.97 0.00 5.28
5237 8756 2.107141 CTCCTTCTAAGCGGCCGG 59.893 66.667 29.38 10.44 0.00 6.13
5238 8757 2.579684 AAGCTCCTTCTAAGCGGCCG 62.580 60.000 24.05 24.05 44.59 6.13
5239 8758 0.464452 TAAGCTCCTTCTAAGCGGCC 59.536 55.000 0.00 0.00 44.59 6.13
5240 8759 1.539280 CCTAAGCTCCTTCTAAGCGGC 60.539 57.143 0.00 0.00 44.59 6.53
5241 8760 1.539280 GCCTAAGCTCCTTCTAAGCGG 60.539 57.143 0.00 0.00 44.59 5.52
5242 8761 1.859383 GCCTAAGCTCCTTCTAAGCG 58.141 55.000 0.00 0.00 44.59 4.68
5243 8762 1.859383 CGCCTAAGCTCCTTCTAAGC 58.141 55.000 0.00 0.00 40.14 3.09
5244 8763 1.539280 GGCGCCTAAGCTCCTTCTAAG 60.539 57.143 22.15 0.00 40.94 2.18
5245 8764 0.464452 GGCGCCTAAGCTCCTTCTAA 59.536 55.000 22.15 0.00 40.94 2.10
5246 8765 2.125178 GGCGCCTAAGCTCCTTCTA 58.875 57.895 22.15 0.00 40.94 2.10
5247 8766 2.904131 GGCGCCTAAGCTCCTTCT 59.096 61.111 22.15 0.00 40.94 2.85
5251 8770 2.514824 CCAAGGCGCCTAAGCTCC 60.515 66.667 33.07 0.00 44.74 4.70
5252 8771 3.205536 GCCAAGGCGCCTAAGCTC 61.206 66.667 32.62 17.57 36.60 4.09
5283 8802 4.694233 ACCTGCGCTGCCTCACTG 62.694 66.667 9.73 0.00 0.00 3.66
5284 8803 4.694233 CACCTGCGCTGCCTCACT 62.694 66.667 9.73 0.00 0.00 3.41
5287 8806 4.082523 TACCACCTGCGCTGCCTC 62.083 66.667 9.73 0.00 0.00 4.70
5288 8807 4.087892 CTACCACCTGCGCTGCCT 62.088 66.667 9.73 0.00 0.00 4.75
5293 8812 4.715523 TTGCCCTACCACCTGCGC 62.716 66.667 0.00 0.00 0.00 6.09
5294 8813 2.436646 CTTGCCCTACCACCTGCG 60.437 66.667 0.00 0.00 0.00 5.18
5295 8814 2.751837 GCTTGCCCTACCACCTGC 60.752 66.667 0.00 0.00 0.00 4.85
5296 8815 1.033746 CATGCTTGCCCTACCACCTG 61.034 60.000 0.00 0.00 0.00 4.00
5297 8816 1.304282 CATGCTTGCCCTACCACCT 59.696 57.895 0.00 0.00 0.00 4.00
5298 8817 1.754234 CCATGCTTGCCCTACCACC 60.754 63.158 0.00 0.00 0.00 4.61
5299 8818 2.418083 GCCATGCTTGCCCTACCAC 61.418 63.158 0.00 0.00 0.00 4.16
5300 8819 2.044053 GCCATGCTTGCCCTACCA 60.044 61.111 0.00 0.00 0.00 3.25
5301 8820 3.211963 CGCCATGCTTGCCCTACC 61.212 66.667 0.00 0.00 0.00 3.18
5302 8821 3.211963 CCGCCATGCTTGCCCTAC 61.212 66.667 0.00 0.00 0.00 3.18
5303 8822 4.504596 CCCGCCATGCTTGCCCTA 62.505 66.667 0.00 0.00 0.00 3.53
5307 8826 3.818787 CAGTCCCGCCATGCTTGC 61.819 66.667 0.00 0.00 0.00 4.01
5308 8827 3.136123 CCAGTCCCGCCATGCTTG 61.136 66.667 0.00 0.00 0.00 4.01
5309 8828 4.431131 CCCAGTCCCGCCATGCTT 62.431 66.667 0.00 0.00 0.00 3.91
5387 8906 3.706373 TCAGGTCCGAGCTTGCCC 61.706 66.667 0.00 0.00 0.00 5.36
5388 8907 2.435059 GTCAGGTCCGAGCTTGCC 60.435 66.667 0.00 0.00 0.00 4.52
5389 8908 2.029844 GTGTCAGGTCCGAGCTTGC 61.030 63.158 0.00 0.00 0.00 4.01
5390 8909 1.734477 CGTGTCAGGTCCGAGCTTG 60.734 63.158 0.00 0.00 0.00 4.01
5391 8910 2.651361 CGTGTCAGGTCCGAGCTT 59.349 61.111 0.00 0.00 0.00 3.74
5392 8911 4.057428 GCGTGTCAGGTCCGAGCT 62.057 66.667 0.00 0.00 0.00 4.09
5424 8943 2.434884 AAGCATCACCTCACGCCG 60.435 61.111 0.00 0.00 0.00 6.46
5425 8944 2.456119 CGAAGCATCACCTCACGCC 61.456 63.158 0.00 0.00 0.00 5.68
5426 8945 1.446099 TCGAAGCATCACCTCACGC 60.446 57.895 0.00 0.00 0.00 5.34
5427 8946 0.109086 AGTCGAAGCATCACCTCACG 60.109 55.000 0.00 0.00 0.00 4.35
5428 8947 1.634702 GAGTCGAAGCATCACCTCAC 58.365 55.000 0.00 0.00 0.00 3.51
5429 8948 0.171231 CGAGTCGAAGCATCACCTCA 59.829 55.000 6.73 0.00 0.00 3.86
5430 8949 0.526524 CCGAGTCGAAGCATCACCTC 60.527 60.000 15.64 0.00 0.00 3.85
5431 8950 1.513158 CCGAGTCGAAGCATCACCT 59.487 57.895 15.64 0.00 0.00 4.00
5432 8951 1.519455 CCCGAGTCGAAGCATCACC 60.519 63.158 15.64 0.00 0.00 4.02
5433 8952 0.103208 ATCCCGAGTCGAAGCATCAC 59.897 55.000 15.64 0.00 0.00 3.06
5434 8953 0.103026 CATCCCGAGTCGAAGCATCA 59.897 55.000 15.64 0.00 0.00 3.07
5435 8954 0.598680 CCATCCCGAGTCGAAGCATC 60.599 60.000 15.64 0.00 0.00 3.91
5436 8955 1.443407 CCATCCCGAGTCGAAGCAT 59.557 57.895 15.64 0.00 0.00 3.79
5437 8956 2.892640 CCATCCCGAGTCGAAGCA 59.107 61.111 15.64 0.00 0.00 3.91
5438 8957 2.586357 GCCATCCCGAGTCGAAGC 60.586 66.667 15.64 5.32 0.00 3.86
5439 8958 2.107141 GGCCATCCCGAGTCGAAG 59.893 66.667 15.64 5.06 0.00 3.79
5440 8959 2.682136 TGGCCATCCCGAGTCGAA 60.682 61.111 15.64 1.58 35.87 3.71
5441 8960 2.928988 ATCTGGCCATCCCGAGTCGA 62.929 60.000 15.64 0.00 35.87 4.20
5442 8961 2.032860 AATCTGGCCATCCCGAGTCG 62.033 60.000 5.51 5.29 35.87 4.18
5443 8962 0.181350 AAATCTGGCCATCCCGAGTC 59.819 55.000 5.51 0.00 35.87 3.36
5444 8963 0.107017 CAAATCTGGCCATCCCGAGT 60.107 55.000 5.51 0.00 35.87 4.18
5445 8964 0.181114 TCAAATCTGGCCATCCCGAG 59.819 55.000 5.51 0.00 35.87 4.63
5446 8965 0.107214 GTCAAATCTGGCCATCCCGA 60.107 55.000 5.51 0.00 35.87 5.14
5447 8966 2.408333 GTCAAATCTGGCCATCCCG 58.592 57.895 5.51 0.00 35.87 5.14
5457 8976 0.250513 GAGCCACCGAGGTCAAATCT 59.749 55.000 0.00 0.00 40.61 2.40
5524 9043 3.028366 GAGACAAGCTTTCGCCCGC 62.028 63.158 0.00 0.00 36.60 6.13
5557 9076 0.039437 GAAAGTGTCGCCGTCTCTGA 60.039 55.000 0.00 0.00 0.00 3.27
5559 9078 0.387929 TTGAAAGTGTCGCCGTCTCT 59.612 50.000 0.00 0.00 0.00 3.10
5564 9083 0.165944 GGTGATTGAAAGTGTCGCCG 59.834 55.000 0.00 0.00 33.38 6.46
5579 9098 2.294074 CCAACAAGAAGGAAACGGTGA 58.706 47.619 0.00 0.00 0.00 4.02
5581 9100 1.029681 GCCAACAAGAAGGAAACGGT 58.970 50.000 0.00 0.00 0.00 4.83
5603 9122 2.224695 TGGAACTGAGAGTACCTCGACA 60.225 50.000 6.81 0.00 44.92 4.35
5620 9139 1.804151 CCGAAGTTGCGAAGATTGGAA 59.196 47.619 0.00 0.00 0.00 3.53
5634 9153 2.617840 TCTAGAGTTTCCCCCGAAGT 57.382 50.000 0.00 0.00 0.00 3.01
5721 9240 1.386533 GTCCCACTTGATGATGCCTG 58.613 55.000 0.00 0.00 0.00 4.85
5753 9272 2.047274 CCTCGACGCCAACACCAT 60.047 61.111 0.00 0.00 0.00 3.55
5794 9313 0.313987 ACGTCTCTGACATCGCACAA 59.686 50.000 0.00 0.00 32.09 3.33
5806 9325 1.512926 GCAACCAATGTCACGTCTCT 58.487 50.000 0.00 0.00 0.00 3.10
5813 9332 1.803334 GACTACCGCAACCAATGTCA 58.197 50.000 0.00 0.00 0.00 3.58
5990 9516 4.767928 ACAACTCCGACTCTGAAAGATAGT 59.232 41.667 0.00 0.00 45.62 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.