Multiple sequence alignment - TraesCS5B01G134300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G134300 chr5B 100.000 4742 0 0 1 4742 251501885 251506626 0.000000e+00 8757.0
1 TraesCS5B01G134300 chr5B 82.716 81 8 3 4353 4431 313208669 313208593 3.060000e-07 67.6
2 TraesCS5B01G134300 chr5D 97.237 2425 63 2 1406 3827 228054683 228057106 0.000000e+00 4104.0
3 TraesCS5B01G134300 chr5D 97.076 855 24 1 591 1444 228053828 228054682 0.000000e+00 1439.0
4 TraesCS5B01G134300 chr5D 90.680 912 36 15 3868 4742 228057091 228057990 0.000000e+00 1168.0
5 TraesCS5B01G134300 chr5D 89.401 217 19 4 16 229 228053347 228053562 2.170000e-68 270.0
6 TraesCS5B01G134300 chr5A 96.296 2430 80 6 1406 3827 306185599 306188026 0.000000e+00 3980.0
7 TraesCS5B01G134300 chr5A 95.046 868 29 4 591 1444 306184731 306185598 0.000000e+00 1352.0
8 TraesCS5B01G134300 chr5A 91.063 414 24 7 4147 4547 306188326 306188739 8.970000e-152 547.0
9 TraesCS5B01G134300 chr5A 93.865 326 17 3 3868 4192 306188011 306188334 5.520000e-134 488.0
10 TraesCS5B01G134300 chr5A 93.367 196 13 0 4547 4742 306190155 306190350 1.670000e-74 291.0
11 TraesCS5B01G134300 chr5A 90.500 200 11 5 4544 4742 306192698 306192890 1.690000e-64 257.0
12 TraesCS5B01G134300 chr5A 91.083 157 13 1 20 176 306180281 306180436 1.340000e-50 211.0
13 TraesCS5B01G134300 chr5A 82.716 81 8 3 4353 4431 364956885 364956809 3.060000e-07 67.6
14 TraesCS5B01G134300 chr2A 96.296 54 2 0 3822 3875 268986758 268986705 6.540000e-14 89.8
15 TraesCS5B01G134300 chr2A 92.982 57 2 2 3819 3875 602451856 602451802 1.090000e-11 82.4
16 TraesCS5B01G134300 chr6A 96.154 52 2 0 3824 3875 147682076 147682127 8.460000e-13 86.1
17 TraesCS5B01G134300 chr6A 93.220 59 2 2 3817 3875 234180645 234180589 8.460000e-13 86.1
18 TraesCS5B01G134300 chr6B 94.444 54 2 1 3819 3872 59302733 59302785 1.090000e-11 82.4
19 TraesCS5B01G134300 chr3B 94.444 54 2 1 3819 3872 445960878 445960930 1.090000e-11 82.4
20 TraesCS5B01G134300 chr2B 90.476 63 4 2 3810 3872 342298121 342298181 1.090000e-11 82.4
21 TraesCS5B01G134300 chr1A 91.379 58 5 0 3815 3872 525218781 525218838 3.930000e-11 80.5
22 TraesCS5B01G134300 chr4B 90.323 62 3 3 3811 3872 345954767 345954825 1.410000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G134300 chr5B 251501885 251506626 4741 False 8757.00 8757 100.000000 1 4742 1 chr5B.!!$F1 4741
1 TraesCS5B01G134300 chr5D 228053347 228057990 4643 False 1745.25 4104 93.598500 16 4742 4 chr5D.!!$F1 4726
2 TraesCS5B01G134300 chr5A 306184731 306192890 8159 False 1152.50 3980 93.356167 591 4742 6 chr5A.!!$F2 4151

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 376 0.034337 CAGGGCATTGCACAAGCTTT 59.966 50.000 14.41 0.0 42.74 3.51 F
466 473 1.065199 TGAGGATTGCTCACCACATCC 60.065 52.381 3.46 0.0 34.26 3.51 F
649 657 1.068588 CTGAATAAGACGGGCATCGGA 59.931 52.381 3.86 0.0 44.45 4.55 F
1304 1325 1.318158 CCTGTGGATTTGGAGCAGGC 61.318 60.000 0.00 0.0 39.97 4.85 F
2546 2609 1.742761 ATCCGTGAACAAGCTGATGG 58.257 50.000 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 1325 1.153745 CTCTTCCCAGCGTTCTCCG 60.154 63.158 0.00 0.0 40.40 4.63 R
1468 1528 1.377725 CAGCGGGCTCAAGGTCAAT 60.378 57.895 0.00 0.0 0.00 2.57 R
2550 2613 0.250234 TCTCCATGGTCTTCCTTGCG 59.750 55.000 12.58 0.0 37.50 4.85 R
2636 2699 0.396811 AAGCGTGGTTGAGGCTAAGT 59.603 50.000 0.00 0.0 45.18 2.24 R
3826 3892 0.105964 TGCACCAGGTTGCCCTTTTA 60.106 50.000 10.46 0.0 42.25 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.239478 AGGTCTAATCCCTTGAGGTACAATATA 58.761 37.037 0.00 0.00 37.88 0.86
63 64 8.924511 AATCCCTTGAGGTACAATATAATGTG 57.075 34.615 3.59 0.00 37.88 3.21
64 65 7.446106 TCCCTTGAGGTACAATATAATGTGT 57.554 36.000 3.59 0.00 37.88 3.72
85 86 8.120140 TGTGTTTAACAATGGATTCATGATGA 57.880 30.769 0.00 0.00 35.24 2.92
126 127 9.502091 AGTAAGCATTAGTAAAGTTTGTCATGA 57.498 29.630 0.00 0.00 31.10 3.07
161 164 7.981225 TGATGATGTGATAAAAGAATGTCGAGA 59.019 33.333 0.00 0.00 0.00 4.04
175 178 7.925993 AGAATGTCGAGAGAGAACACTATTAG 58.074 38.462 0.00 0.00 43.49 1.73
181 184 6.095580 TCGAGAGAGAACACTATTAGCATGTT 59.904 38.462 0.00 0.64 35.54 2.71
201 204 8.050778 CATGTTTGCAACTAAGACCCTATTTA 57.949 34.615 0.00 0.00 0.00 1.40
202 205 7.443259 TGTTTGCAACTAAGACCCTATTTAC 57.557 36.000 0.00 0.00 0.00 2.01
217 220 5.012664 CCCTATTTACTTGGGGTTTTGCTTT 59.987 40.000 0.00 0.00 36.35 3.51
229 232 4.438148 GGTTTTGCTTTAGCTTTTCCACA 58.562 39.130 0.00 0.00 42.66 4.17
231 234 5.527214 GGTTTTGCTTTAGCTTTTCCACATT 59.473 36.000 0.00 0.00 42.66 2.71
232 235 6.421405 GTTTTGCTTTAGCTTTTCCACATTG 58.579 36.000 0.00 0.00 42.66 2.82
234 237 4.870363 TGCTTTAGCTTTTCCACATTGAC 58.130 39.130 0.00 0.00 42.66 3.18
236 239 5.163468 TGCTTTAGCTTTTCCACATTGACAA 60.163 36.000 0.00 0.00 42.66 3.18
237 240 5.752955 GCTTTAGCTTTTCCACATTGACAAA 59.247 36.000 0.00 0.00 38.21 2.83
238 241 6.257630 GCTTTAGCTTTTCCACATTGACAAAA 59.742 34.615 0.00 0.00 38.21 2.44
239 242 7.201600 GCTTTAGCTTTTCCACATTGACAAAAA 60.202 33.333 0.00 0.00 38.21 1.94
264 267 7.150783 AGCAACAAAAGCTTCTAAATAGAGG 57.849 36.000 0.00 0.00 39.87 3.69
297 300 1.498043 CGGCTTTTGGCTTTTGTGGC 61.498 55.000 0.00 0.00 43.55 5.01
322 329 5.398603 TTTTGTCAAAGTGGAAAAGCTGA 57.601 34.783 0.00 0.00 0.00 4.26
326 333 5.788450 TGTCAAAGTGGAAAAGCTGAAAAA 58.212 33.333 0.00 0.00 0.00 1.94
344 351 0.677842 AAGCTGAAGCAAAAGCCCAG 59.322 50.000 4.90 0.00 45.16 4.45
351 358 1.484038 AGCAAAAGCCCAGACAAACA 58.516 45.000 0.00 0.00 0.00 2.83
352 359 1.410153 AGCAAAAGCCCAGACAAACAG 59.590 47.619 0.00 0.00 0.00 3.16
366 373 0.249996 AAACAGGGCATTGCACAAGC 60.250 50.000 14.41 0.00 42.57 4.01
367 374 1.117142 AACAGGGCATTGCACAAGCT 61.117 50.000 14.41 0.00 42.74 3.74
368 375 1.117142 ACAGGGCATTGCACAAGCTT 61.117 50.000 14.41 0.00 42.74 3.74
369 376 0.034337 CAGGGCATTGCACAAGCTTT 59.966 50.000 14.41 0.00 42.74 3.51
370 377 1.273048 CAGGGCATTGCACAAGCTTTA 59.727 47.619 14.41 0.00 42.74 1.85
380 387 7.507304 CATTGCACAAGCTTTATCTTTCAAAG 58.493 34.615 0.00 0.00 42.74 2.77
384 391 8.023128 TGCACAAGCTTTATCTTTCAAAGATAC 58.977 33.333 17.92 8.38 44.18 2.24
405 412 1.379527 TTGAGAGCTAGACGCATCGA 58.620 50.000 0.00 0.00 42.61 3.59
410 417 2.226912 AGAGCTAGACGCATCGATAACC 59.773 50.000 0.00 0.00 42.61 2.85
412 419 2.558795 AGCTAGACGCATCGATAACCAT 59.441 45.455 0.00 0.00 42.61 3.55
423 430 6.145534 CGCATCGATAACCATAAGCTTTAAGA 59.854 38.462 3.20 0.00 0.00 2.10
466 473 1.065199 TGAGGATTGCTCACCACATCC 60.065 52.381 3.46 0.00 34.26 3.51
472 479 2.347114 CTCACCACATCCGCCACA 59.653 61.111 0.00 0.00 0.00 4.17
474 481 2.281414 CACCACATCCGCCACACA 60.281 61.111 0.00 0.00 0.00 3.72
491 498 3.745975 CACACAGTTTTCTATTCTCGCCA 59.254 43.478 0.00 0.00 0.00 5.69
525 532 4.442401 TGATTGCTGGGTGATGATATGT 57.558 40.909 0.00 0.00 0.00 2.29
526 533 4.795469 TGATTGCTGGGTGATGATATGTT 58.205 39.130 0.00 0.00 0.00 2.71
527 534 5.202765 TGATTGCTGGGTGATGATATGTTT 58.797 37.500 0.00 0.00 0.00 2.83
528 535 5.657745 TGATTGCTGGGTGATGATATGTTTT 59.342 36.000 0.00 0.00 0.00 2.43
529 536 5.999205 TTGCTGGGTGATGATATGTTTTT 57.001 34.783 0.00 0.00 0.00 1.94
530 537 5.581126 TGCTGGGTGATGATATGTTTTTC 57.419 39.130 0.00 0.00 0.00 2.29
531 538 5.263599 TGCTGGGTGATGATATGTTTTTCT 58.736 37.500 0.00 0.00 0.00 2.52
532 539 5.716228 TGCTGGGTGATGATATGTTTTTCTT 59.284 36.000 0.00 0.00 0.00 2.52
533 540 6.211184 TGCTGGGTGATGATATGTTTTTCTTT 59.789 34.615 0.00 0.00 0.00 2.52
534 541 7.099120 GCTGGGTGATGATATGTTTTTCTTTT 58.901 34.615 0.00 0.00 0.00 2.27
535 542 7.603784 GCTGGGTGATGATATGTTTTTCTTTTT 59.396 33.333 0.00 0.00 0.00 1.94
537 544 9.921637 TGGGTGATGATATGTTTTTCTTTTTAC 57.078 29.630 0.00 0.00 0.00 2.01
538 545 9.921637 GGGTGATGATATGTTTTTCTTTTTACA 57.078 29.630 0.00 0.00 0.00 2.41
548 555 7.616673 TGTTTTTCTTTTTACATCAATGTGCG 58.383 30.769 5.89 0.00 41.89 5.34
549 556 7.276658 TGTTTTTCTTTTTACATCAATGTGCGT 59.723 29.630 5.89 0.00 41.89 5.24
550 557 6.746104 TTTCTTTTTACATCAATGTGCGTG 57.254 33.333 5.89 0.00 41.89 5.34
551 558 5.681337 TCTTTTTACATCAATGTGCGTGA 57.319 34.783 5.89 0.00 41.89 4.35
552 559 5.448438 TCTTTTTACATCAATGTGCGTGAC 58.552 37.500 5.89 0.00 41.89 3.67
553 560 3.447752 TTTACATCAATGTGCGTGACG 57.552 42.857 0.00 0.00 41.89 4.35
554 561 2.355717 TACATCAATGTGCGTGACGA 57.644 45.000 10.10 0.00 41.89 4.20
555 562 1.725641 ACATCAATGTGCGTGACGAT 58.274 45.000 10.10 0.00 40.03 3.73
556 563 2.887337 ACATCAATGTGCGTGACGATA 58.113 42.857 10.10 0.00 40.03 2.92
557 564 3.457234 ACATCAATGTGCGTGACGATAT 58.543 40.909 10.10 0.00 40.03 1.63
587 594 9.705290 AATTTTGAAAACAAAGTACACAGTTCT 57.295 25.926 0.00 0.00 0.00 3.01
649 657 1.068588 CTGAATAAGACGGGCATCGGA 59.931 52.381 3.86 0.00 44.45 4.55
961 982 1.486211 CACCACTATCCCCTTCGTCT 58.514 55.000 0.00 0.00 0.00 4.18
1108 1129 2.713531 ATTTTGGCACAGGTCGGGCT 62.714 55.000 0.00 0.00 42.39 5.19
1206 1227 1.880027 GATGTGGTGAACCGAGCTTTT 59.120 47.619 0.00 0.00 39.43 2.27
1304 1325 1.318158 CCTGTGGATTTGGAGCAGGC 61.318 60.000 0.00 0.00 39.97 4.85
1511 1571 5.702670 CACATTCCATGTCCACTGGATATAC 59.297 44.000 6.98 0.00 42.70 1.47
1557 1617 3.454812 ACTAGTTGTGGAAGGTGTCTGTT 59.545 43.478 0.00 0.00 0.00 3.16
1570 1630 7.013369 GGAAGGTGTCTGTTTTCTGTATTCTTT 59.987 37.037 0.00 0.00 0.00 2.52
1571 1631 7.881775 AGGTGTCTGTTTTCTGTATTCTTTT 57.118 32.000 0.00 0.00 0.00 2.27
1572 1632 8.974060 AGGTGTCTGTTTTCTGTATTCTTTTA 57.026 30.769 0.00 0.00 0.00 1.52
1646 1706 5.777850 TGATGCATATGAAACCAGGAATG 57.222 39.130 6.97 0.00 0.00 2.67
1680 1740 8.651589 TCCTATTTGTTCCGTATCTATCTGAT 57.348 34.615 0.00 0.00 39.11 2.90
1709 1769 4.082571 GCTGCTCAACAAATATCAACAGGT 60.083 41.667 0.00 0.00 0.00 4.00
1714 1774 4.764823 TCAACAAATATCAACAGGTCCACC 59.235 41.667 0.00 0.00 0.00 4.61
1729 1789 2.535317 ACCTGGTTGCCCCCATCT 60.535 61.111 0.00 0.00 33.00 2.90
1815 1875 4.170292 GCAATGAGAAAGTGCTTGATGT 57.830 40.909 0.00 0.00 46.34 3.06
1816 1876 4.164294 GCAATGAGAAAGTGCTTGATGTC 58.836 43.478 0.00 0.00 46.34 3.06
2085 2145 2.768492 GGCAAGAGCAGGCGGAATG 61.768 63.158 0.00 0.00 44.61 2.67
2120 2180 5.410355 AATGCATGCAGGAAATTACTTGT 57.590 34.783 26.69 0.61 0.00 3.16
2127 2187 7.331687 GCATGCAGGAAATTACTTGTGTTAATT 59.668 33.333 14.21 0.00 0.00 1.40
2208 2271 6.976349 ACATTATGCAGTGATTATGTTGCTTG 59.024 34.615 0.00 0.00 37.45 4.01
2492 2555 3.624861 CGAATGGAGAATGTCCCTTTCAG 59.375 47.826 8.98 1.08 46.31 3.02
2546 2609 1.742761 ATCCGTGAACAAGCTGATGG 58.257 50.000 0.00 0.00 0.00 3.51
2632 2695 3.555168 GGAGGAGACGACATTCAACTGTT 60.555 47.826 0.00 0.00 0.00 3.16
2636 2699 3.804036 AGACGACATTCAACTGTTTGGA 58.196 40.909 0.00 0.00 33.06 3.53
2653 2716 1.019805 GGACTTAGCCTCAACCACGC 61.020 60.000 0.00 0.00 0.00 5.34
2669 2732 0.392060 ACGCTTGGTTCCCCGAATAC 60.392 55.000 0.00 0.00 0.00 1.89
2877 2940 0.822532 CCCATCTTCAGCAGGGCATC 60.823 60.000 0.00 0.00 33.91 3.91
2916 2979 1.691219 GGCCCACAATTCTGGAGGA 59.309 57.895 0.57 0.00 32.30 3.71
2958 3021 1.352352 ACCATCAAGGACCTGTTCAGG 59.648 52.381 16.25 16.25 41.22 3.86
3036 3099 1.872952 CGTGTCAAGCTGGTCAATTCA 59.127 47.619 0.00 0.00 0.00 2.57
3144 3207 0.549902 TCCAGGGAGAAAGGGATGCA 60.550 55.000 0.00 0.00 0.00 3.96
3295 3358 2.169144 CAGTGCTGGACCATGTATCTCA 59.831 50.000 0.00 0.00 0.00 3.27
3470 3533 2.575805 AAACTGAAAGAGGCAGGAGG 57.424 50.000 0.00 0.00 37.69 4.30
3513 3579 2.164422 TGACTACATGACGCTCCTTGAG 59.836 50.000 0.00 0.00 0.00 3.02
3811 3877 6.872628 TGATATGCTTCCTTATCTTGCAAG 57.127 37.500 20.81 20.81 37.20 4.01
3812 3878 6.359804 TGATATGCTTCCTTATCTTGCAAGT 58.640 36.000 25.19 15.13 37.20 3.16
3813 3879 6.484643 TGATATGCTTCCTTATCTTGCAAGTC 59.515 38.462 25.19 11.00 37.20 3.01
3814 3880 3.347216 TGCTTCCTTATCTTGCAAGTCC 58.653 45.455 25.19 5.89 0.00 3.85
3815 3881 3.244875 TGCTTCCTTATCTTGCAAGTCCA 60.245 43.478 25.19 7.59 0.00 4.02
3816 3882 3.758554 GCTTCCTTATCTTGCAAGTCCAA 59.241 43.478 25.19 15.77 0.00 3.53
3817 3883 4.142513 GCTTCCTTATCTTGCAAGTCCAAG 60.143 45.833 25.19 22.42 42.73 3.61
3818 3884 3.955471 TCCTTATCTTGCAAGTCCAAGG 58.045 45.455 30.07 30.07 41.89 3.61
3819 3885 3.330701 TCCTTATCTTGCAAGTCCAAGGT 59.669 43.478 31.92 12.13 41.89 3.50
3820 3886 3.441572 CCTTATCTTGCAAGTCCAAGGTG 59.558 47.826 28.87 16.31 41.89 4.00
3821 3887 2.957402 ATCTTGCAAGTCCAAGGTGA 57.043 45.000 25.19 4.02 41.89 4.02
3822 3888 2.260844 TCTTGCAAGTCCAAGGTGAG 57.739 50.000 25.19 0.00 41.89 3.51
3823 3889 1.768275 TCTTGCAAGTCCAAGGTGAGA 59.232 47.619 25.19 0.00 41.89 3.27
3824 3890 2.373169 TCTTGCAAGTCCAAGGTGAGAT 59.627 45.455 25.19 0.00 41.89 2.75
3825 3891 3.582647 TCTTGCAAGTCCAAGGTGAGATA 59.417 43.478 25.19 0.00 41.89 1.98
3826 3892 4.225942 TCTTGCAAGTCCAAGGTGAGATAT 59.774 41.667 25.19 0.00 41.89 1.63
3827 3893 5.425217 TCTTGCAAGTCCAAGGTGAGATATA 59.575 40.000 25.19 0.00 41.89 0.86
3828 3894 5.692115 TGCAAGTCCAAGGTGAGATATAA 57.308 39.130 0.00 0.00 0.00 0.98
3829 3895 6.061022 TGCAAGTCCAAGGTGAGATATAAA 57.939 37.500 0.00 0.00 0.00 1.40
3830 3896 6.480763 TGCAAGTCCAAGGTGAGATATAAAA 58.519 36.000 0.00 0.00 0.00 1.52
3831 3897 6.599244 TGCAAGTCCAAGGTGAGATATAAAAG 59.401 38.462 0.00 0.00 0.00 2.27
3832 3898 6.038714 GCAAGTCCAAGGTGAGATATAAAAGG 59.961 42.308 0.00 0.00 0.00 3.11
3833 3899 6.253946 AGTCCAAGGTGAGATATAAAAGGG 57.746 41.667 0.00 0.00 0.00 3.95
3834 3900 4.822350 GTCCAAGGTGAGATATAAAAGGGC 59.178 45.833 0.00 0.00 0.00 5.19
3835 3901 4.476846 TCCAAGGTGAGATATAAAAGGGCA 59.523 41.667 0.00 0.00 0.00 5.36
3836 3902 5.044476 TCCAAGGTGAGATATAAAAGGGCAA 60.044 40.000 0.00 0.00 0.00 4.52
3837 3903 5.067805 CCAAGGTGAGATATAAAAGGGCAAC 59.932 44.000 0.00 0.00 0.00 4.17
3849 3915 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3850 3916 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3851 3917 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3852 3918 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3853 3919 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3859 3925 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3860 3926 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3861 3927 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3862 3928 1.153289 CATGTAGCTCCCGCTTGCT 60.153 57.895 0.00 0.00 46.47 3.91
3863 3929 1.144936 ATGTAGCTCCCGCTTGCTC 59.855 57.895 0.00 0.00 46.47 4.26
3864 3930 1.617018 ATGTAGCTCCCGCTTGCTCA 61.617 55.000 0.00 0.00 46.47 4.26
3865 3931 1.520342 GTAGCTCCCGCTTGCTCAG 60.520 63.158 0.00 0.00 46.47 3.35
3866 3932 2.725312 TAGCTCCCGCTTGCTCAGG 61.725 63.158 0.00 0.00 46.47 3.86
3896 3962 6.365520 AGGTGGGATATGAGGTTCAAATTAC 58.634 40.000 0.00 0.00 0.00 1.89
3900 3966 7.496591 GTGGGATATGAGGTTCAAATTACGTTA 59.503 37.037 0.00 0.00 0.00 3.18
4068 4135 6.092259 CAGGTTTCCCTTTTCTAATACTGACG 59.908 42.308 0.00 0.00 39.89 4.35
4178 4290 8.150945 TCTGTAGAGAGTTAAAAGTTTCTGCAT 58.849 33.333 8.58 0.00 35.66 3.96
4231 4343 6.885526 CGATTTGCATTTCATCGTTATCTC 57.114 37.500 8.97 0.00 36.00 2.75
4233 4345 6.789403 CGATTTGCATTTCATCGTTATCTCTC 59.211 38.462 8.97 0.00 36.00 3.20
4312 4450 1.964223 GGAGATCCGTGGAGAATGCTA 59.036 52.381 0.00 0.00 0.00 3.49
4328 4466 7.542130 GGAGAATGCTAACAAAATGTACCAAAG 59.458 37.037 0.00 0.00 0.00 2.77
4380 4518 8.250332 CCACAATGTAGTGCATATTAGGTTTTT 58.750 33.333 0.00 0.00 36.67 1.94
4523 4674 5.544176 TCCCGCAAGATTAAGAGAATCCTAT 59.456 40.000 0.00 0.00 43.02 2.57
4561 6128 5.119898 CAGAGCCTATAAGCGTCAAATGATC 59.880 44.000 0.00 0.00 38.01 2.92
4638 6205 6.699575 ATTGTGCATCCTCTTAATGGTTAC 57.300 37.500 0.00 0.00 0.00 2.50
4738 6305 6.166279 TCTAATGAGTGATTGAGCGAGTTTT 58.834 36.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 6.507023 AGACCTTTTCACTTTAGCACAATTG 58.493 36.000 3.24 3.24 0.00 2.32
14 15 6.715347 AGACCTTTTCACTTTAGCACAATT 57.285 33.333 0.00 0.00 0.00 2.32
15 16 7.817418 TTAGACCTTTTCACTTTAGCACAAT 57.183 32.000 0.00 0.00 0.00 2.71
16 17 7.040686 GGATTAGACCTTTTCACTTTAGCACAA 60.041 37.037 0.00 0.00 0.00 3.33
17 18 6.430000 GGATTAGACCTTTTCACTTTAGCACA 59.570 38.462 0.00 0.00 0.00 4.57
18 19 6.127980 GGGATTAGACCTTTTCACTTTAGCAC 60.128 42.308 0.00 0.00 0.00 4.40
19 20 5.944007 GGGATTAGACCTTTTCACTTTAGCA 59.056 40.000 0.00 0.00 0.00 3.49
20 21 6.181190 AGGGATTAGACCTTTTCACTTTAGC 58.819 40.000 0.00 0.00 33.64 3.09
21 22 7.883311 TCAAGGGATTAGACCTTTTCACTTTAG 59.117 37.037 0.00 0.00 45.81 1.85
22 23 7.751646 TCAAGGGATTAGACCTTTTCACTTTA 58.248 34.615 0.00 0.00 45.81 1.85
23 24 6.610830 TCAAGGGATTAGACCTTTTCACTTT 58.389 36.000 0.00 0.00 45.81 2.66
58 59 9.373603 CATCATGAATCCATTGTTAAACACATT 57.626 29.630 0.00 0.00 34.43 2.71
63 64 7.646922 GCTCTCATCATGAATCCATTGTTAAAC 59.353 37.037 0.00 0.00 0.00 2.01
64 65 7.339976 TGCTCTCATCATGAATCCATTGTTAAA 59.660 33.333 0.00 0.00 0.00 1.52
100 101 9.502091 TCATGACAAACTTTACTAATGCTTACT 57.498 29.630 0.00 0.00 0.00 2.24
151 154 6.635239 GCTAATAGTGTTCTCTCTCGACATTC 59.365 42.308 0.00 0.00 0.00 2.67
161 164 5.939883 TGCAAACATGCTAATAGTGTTCTCT 59.060 36.000 2.22 0.00 35.19 3.10
181 184 6.657541 CCAAGTAAATAGGGTCTTAGTTGCAA 59.342 38.462 0.00 0.00 37.22 4.08
197 200 5.306937 AGCTAAAGCAAAACCCCAAGTAAAT 59.693 36.000 4.54 0.00 45.16 1.40
201 204 2.677914 AGCTAAAGCAAAACCCCAAGT 58.322 42.857 4.54 0.00 45.16 3.16
202 205 3.751479 AAGCTAAAGCAAAACCCCAAG 57.249 42.857 4.54 0.00 45.16 3.61
240 243 6.349694 GCCTCTATTTAGAAGCTTTTGTTGCT 60.350 38.462 0.00 0.00 43.32 3.91
241 244 5.802451 GCCTCTATTTAGAAGCTTTTGTTGC 59.198 40.000 0.00 0.00 36.94 4.17
242 245 7.150783 AGCCTCTATTTAGAAGCTTTTGTTG 57.849 36.000 0.00 0.00 45.24 3.33
270 273 3.535280 AAGCCAAAAGCCGAAGAAAAA 57.465 38.095 0.00 0.00 45.47 1.94
271 274 3.535280 AAAGCCAAAAGCCGAAGAAAA 57.465 38.095 0.00 0.00 45.47 2.29
272 275 3.194062 CAAAAGCCAAAAGCCGAAGAAA 58.806 40.909 0.00 0.00 45.47 2.52
273 276 2.167487 ACAAAAGCCAAAAGCCGAAGAA 59.833 40.909 0.00 0.00 45.47 2.52
274 277 1.754226 ACAAAAGCCAAAAGCCGAAGA 59.246 42.857 0.00 0.00 45.47 2.87
275 278 1.860326 CACAAAAGCCAAAAGCCGAAG 59.140 47.619 0.00 0.00 45.47 3.79
276 279 1.472376 CCACAAAAGCCAAAAGCCGAA 60.472 47.619 0.00 0.00 45.47 4.30
277 280 0.103937 CCACAAAAGCCAAAAGCCGA 59.896 50.000 0.00 0.00 45.47 5.54
278 281 1.498043 GCCACAAAAGCCAAAAGCCG 61.498 55.000 0.00 0.00 45.47 5.52
279 282 0.179048 AGCCACAAAAGCCAAAAGCC 60.179 50.000 0.00 0.00 45.47 4.35
280 283 1.667236 AAGCCACAAAAGCCAAAAGC 58.333 45.000 0.00 0.00 44.25 3.51
281 284 4.700268 AAAAAGCCACAAAAGCCAAAAG 57.300 36.364 0.00 0.00 0.00 2.27
306 313 5.147767 GCTTTTTCAGCTTTTCCACTTTG 57.852 39.130 0.00 0.00 46.27 2.77
319 326 3.246936 GGCTTTTGCTTCAGCTTTTTCAG 59.753 43.478 0.00 0.00 46.54 3.02
322 329 2.093021 TGGGCTTTTGCTTCAGCTTTTT 60.093 40.909 0.00 0.00 46.54 1.94
326 333 0.178981 TCTGGGCTTTTGCTTCAGCT 60.179 50.000 0.00 0.00 46.54 4.24
334 341 1.069049 CCCTGTTTGTCTGGGCTTTTG 59.931 52.381 0.00 0.00 45.83 2.44
344 351 0.388659 TGTGCAATGCCCTGTTTGTC 59.611 50.000 1.53 0.00 0.00 3.18
351 358 1.631405 TAAAGCTTGTGCAATGCCCT 58.369 45.000 0.00 0.00 42.74 5.19
352 359 2.167075 AGATAAAGCTTGTGCAATGCCC 59.833 45.455 0.00 0.00 42.74 5.36
356 363 7.436118 TCTTTGAAAGATAAAGCTTGTGCAAT 58.564 30.769 3.02 0.00 35.44 3.56
393 400 4.559251 GCTTATGGTTATCGATGCGTCTAG 59.441 45.833 8.54 0.00 0.00 2.43
395 402 3.005897 AGCTTATGGTTATCGATGCGTCT 59.994 43.478 8.54 0.00 0.00 4.18
466 473 3.181530 CGAGAATAGAAAACTGTGTGGCG 60.182 47.826 0.00 0.00 0.00 5.69
472 479 6.385649 TTTTTGGCGAGAATAGAAAACTGT 57.614 33.333 0.00 0.00 0.00 3.55
509 516 5.841957 AGAAAAACATATCATCACCCAGC 57.158 39.130 0.00 0.00 0.00 4.85
525 532 7.489435 TCACGCACATTGATGTAAAAAGAAAAA 59.511 29.630 0.00 0.00 39.39 1.94
526 533 6.975197 TCACGCACATTGATGTAAAAAGAAAA 59.025 30.769 0.00 0.00 39.39 2.29
527 534 6.416455 GTCACGCACATTGATGTAAAAAGAAA 59.584 34.615 0.00 0.00 39.39 2.52
528 535 5.912396 GTCACGCACATTGATGTAAAAAGAA 59.088 36.000 0.00 0.00 39.39 2.52
529 536 5.448438 GTCACGCACATTGATGTAAAAAGA 58.552 37.500 0.00 0.00 39.39 2.52
530 537 4.318071 CGTCACGCACATTGATGTAAAAAG 59.682 41.667 0.00 0.00 39.39 2.27
531 538 4.024809 TCGTCACGCACATTGATGTAAAAA 60.025 37.500 0.00 0.00 39.39 1.94
532 539 3.495001 TCGTCACGCACATTGATGTAAAA 59.505 39.130 0.00 0.00 39.39 1.52
533 540 3.060602 TCGTCACGCACATTGATGTAAA 58.939 40.909 0.00 0.00 39.39 2.01
534 541 2.678324 TCGTCACGCACATTGATGTAA 58.322 42.857 0.00 0.00 39.39 2.41
535 542 2.355717 TCGTCACGCACATTGATGTA 57.644 45.000 0.00 0.00 39.39 2.29
536 543 1.725641 ATCGTCACGCACATTGATGT 58.274 45.000 0.00 0.00 42.84 3.06
537 544 3.245990 ACATATCGTCACGCACATTGATG 59.754 43.478 0.00 0.00 0.00 3.07
538 545 3.457234 ACATATCGTCACGCACATTGAT 58.543 40.909 0.00 0.00 0.00 2.57
539 546 2.887337 ACATATCGTCACGCACATTGA 58.113 42.857 0.00 0.00 0.00 2.57
540 547 3.656651 AACATATCGTCACGCACATTG 57.343 42.857 0.00 0.00 0.00 2.82
541 548 5.984233 ATTAACATATCGTCACGCACATT 57.016 34.783 0.00 0.00 0.00 2.71
542 549 5.984233 AATTAACATATCGTCACGCACAT 57.016 34.783 0.00 0.00 0.00 3.21
543 550 5.788055 AAATTAACATATCGTCACGCACA 57.212 34.783 0.00 0.00 0.00 4.57
544 551 6.244999 TCAAAATTAACATATCGTCACGCAC 58.755 36.000 0.00 0.00 0.00 5.34
545 552 6.410243 TCAAAATTAACATATCGTCACGCA 57.590 33.333 0.00 0.00 0.00 5.24
546 553 7.713792 TTTCAAAATTAACATATCGTCACGC 57.286 32.000 0.00 0.00 0.00 5.34
547 554 9.108449 TGTTTTCAAAATTAACATATCGTCACG 57.892 29.630 0.00 0.00 0.00 4.35
595 602 9.528018 CCAGTATTGAAATTTGTGTGTACTTTT 57.472 29.630 0.00 0.00 0.00 2.27
601 608 7.171337 GCATTTCCAGTATTGAAATTTGTGTGT 59.829 33.333 0.00 0.00 39.71 3.72
649 657 1.411041 GGTCCGGTAGCTTAGATGGT 58.589 55.000 0.00 0.00 0.00 3.55
961 982 1.134699 GTGCAGATGGATGGAGACGAA 60.135 52.381 0.00 0.00 0.00 3.85
1045 1066 3.726557 AGGCAAAGGAATCACTCATGA 57.273 42.857 0.00 0.00 39.83 3.07
1304 1325 1.153745 CTCTTCCCAGCGTTCTCCG 60.154 63.158 0.00 0.00 40.40 4.63
1468 1528 1.377725 CAGCGGGCTCAAGGTCAAT 60.378 57.895 0.00 0.00 0.00 2.57
1511 1571 3.302221 CCACAACGAGTAACAACGAACAG 60.302 47.826 0.00 0.00 0.00 3.16
1597 1657 2.499289 TGTGGCAACCAATCAACTTTGT 59.501 40.909 0.00 0.00 34.18 2.83
1646 1706 3.248602 CGGAACAAATAGGATGCACTAGC 59.751 47.826 0.00 0.00 42.57 3.42
1680 1740 6.270156 TGATATTTGTTGAGCAGCAATTCA 57.730 33.333 0.00 3.19 39.03 2.57
1729 1789 8.918202 TTCTAAAAAGAATTCAAGCCACTAGA 57.082 30.769 8.44 2.11 0.00 2.43
1763 1823 3.118261 AGAATCCTACATCGGTGTGCATT 60.118 43.478 12.68 6.50 39.39 3.56
1811 1871 4.598406 TGTTGCATGTTGATACGACATC 57.402 40.909 0.00 0.00 35.64 3.06
1815 1875 3.365868 GGCTTTGTTGCATGTTGATACGA 60.366 43.478 0.00 0.00 34.04 3.43
1816 1876 2.916716 GGCTTTGTTGCATGTTGATACG 59.083 45.455 0.00 0.00 34.04 3.06
1907 1967 2.160205 TCTAGTGCACTTACTCGCTGT 58.840 47.619 27.06 0.00 32.19 4.40
1922 1982 2.093235 GCCAGTCAATGCCTTCTCTAGT 60.093 50.000 0.00 0.00 0.00 2.57
2085 2145 2.620242 CATGCATTTACCACCCTTTGC 58.380 47.619 0.00 0.00 0.00 3.68
2093 2153 4.822685 AATTTCCTGCATGCATTTACCA 57.177 36.364 22.97 3.83 0.00 3.25
2120 2180 9.585099 AATACACGTATTCTTACCGAATTAACA 57.415 29.630 0.00 0.00 42.26 2.41
2127 2187 9.935682 CTAGTAAAATACACGTATTCTTACCGA 57.064 33.333 18.64 12.59 34.90 4.69
2208 2271 2.102420 GCCCATATTTGGTTTACCCTGC 59.898 50.000 1.26 0.00 41.91 4.85
2492 2555 1.918609 GTGTCCTGATCGAACGCTTAC 59.081 52.381 0.00 0.00 0.00 2.34
2535 2598 3.121030 GCGTCGCCATCAGCTTGT 61.121 61.111 5.75 0.00 40.39 3.16
2546 2609 1.741770 ATGGTCTTCCTTGCGTCGC 60.742 57.895 11.10 11.10 34.23 5.19
2550 2613 0.250234 TCTCCATGGTCTTCCTTGCG 59.750 55.000 12.58 0.00 37.50 4.85
2553 2616 1.280421 GCTGTCTCCATGGTCTTCCTT 59.720 52.381 12.58 0.00 34.23 3.36
2632 2695 1.270625 CGTGGTTGAGGCTAAGTCCAA 60.271 52.381 0.00 0.00 0.00 3.53
2636 2699 0.396811 AAGCGTGGTTGAGGCTAAGT 59.603 50.000 0.00 0.00 45.18 2.24
2669 2732 3.740128 CTCAGGGGATCAACCGGCG 62.740 68.421 0.00 0.00 40.11 6.46
2916 2979 1.662608 CACCTGAGCTGACACGACT 59.337 57.895 0.00 0.00 0.00 4.18
2958 3021 2.042520 TTGTCAGCCAACGCGTGAAC 62.043 55.000 14.98 4.80 41.18 3.18
3020 3083 1.704628 TCCCTGAATTGACCAGCTTGA 59.295 47.619 0.00 0.00 0.00 3.02
3036 3099 1.199615 GCTCTAAGACAGCCTTCCCT 58.800 55.000 0.00 0.00 36.34 4.20
3171 3234 2.892425 GACTTGCGGGCCTCATCG 60.892 66.667 0.84 0.00 0.00 3.84
3295 3358 1.991230 CCTCCTTCCGACATTGGGT 59.009 57.895 0.00 0.00 0.00 4.51
3513 3579 3.427161 AGCGCATAAGCCTTTTCAATC 57.573 42.857 11.47 0.00 37.52 2.67
3663 3729 2.438434 GCACCTTCACCCCCATCG 60.438 66.667 0.00 0.00 0.00 3.84
3795 3861 4.397417 CCTTGGACTTGCAAGATAAGGAAG 59.603 45.833 32.98 23.57 39.89 3.46
3811 3877 4.822350 GCCCTTTTATATCTCACCTTGGAC 59.178 45.833 0.00 0.00 0.00 4.02
3812 3878 4.476846 TGCCCTTTTATATCTCACCTTGGA 59.523 41.667 0.00 0.00 0.00 3.53
3813 3879 4.792068 TGCCCTTTTATATCTCACCTTGG 58.208 43.478 0.00 0.00 0.00 3.61
3814 3880 5.067805 GGTTGCCCTTTTATATCTCACCTTG 59.932 44.000 0.00 0.00 0.00 3.61
3815 3881 5.044105 AGGTTGCCCTTTTATATCTCACCTT 60.044 40.000 0.00 0.00 38.13 3.50
3816 3882 4.478686 AGGTTGCCCTTTTATATCTCACCT 59.521 41.667 0.00 0.00 38.13 4.00
3817 3883 4.580580 CAGGTTGCCCTTTTATATCTCACC 59.419 45.833 0.00 0.00 39.89 4.02
3818 3884 4.580580 CCAGGTTGCCCTTTTATATCTCAC 59.419 45.833 0.00 0.00 39.89 3.51
3819 3885 4.229582 ACCAGGTTGCCCTTTTATATCTCA 59.770 41.667 0.00 0.00 39.89 3.27
3820 3886 4.580580 CACCAGGTTGCCCTTTTATATCTC 59.419 45.833 0.00 0.00 39.89 2.75
3821 3887 4.536765 CACCAGGTTGCCCTTTTATATCT 58.463 43.478 0.00 0.00 39.89 1.98
3822 3888 3.068165 GCACCAGGTTGCCCTTTTATATC 59.932 47.826 0.00 0.00 39.89 1.63
3823 3889 3.031013 GCACCAGGTTGCCCTTTTATAT 58.969 45.455 0.00 0.00 39.89 0.86
3824 3890 2.225142 TGCACCAGGTTGCCCTTTTATA 60.225 45.455 10.46 0.00 42.25 0.98
3825 3891 1.266178 GCACCAGGTTGCCCTTTTAT 58.734 50.000 0.00 0.00 39.89 1.40
3826 3892 0.105964 TGCACCAGGTTGCCCTTTTA 60.106 50.000 10.46 0.00 42.25 1.52
3827 3893 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3828 3894 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3829 3895 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3830 3896 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3831 3897 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3832 3898 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3833 3899 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3834 3900 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3835 3901 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3851 3917 3.672295 GACCCTGAGCAAGCGGGAG 62.672 68.421 10.00 0.00 40.55 4.30
3852 3918 3.706373 GACCCTGAGCAAGCGGGA 61.706 66.667 10.00 0.00 40.55 5.14
3853 3919 4.785453 GGACCCTGAGCAAGCGGG 62.785 72.222 2.44 2.44 43.79 6.13
3854 3920 3.551496 TTGGACCCTGAGCAAGCGG 62.551 63.158 0.00 0.00 0.00 5.52
3855 3921 2.032528 TTGGACCCTGAGCAAGCG 59.967 61.111 0.00 0.00 0.00 4.68
3856 3922 1.676967 CCTTGGACCCTGAGCAAGC 60.677 63.158 0.00 0.00 0.00 4.01
3857 3923 0.607489 CACCTTGGACCCTGAGCAAG 60.607 60.000 0.00 0.00 0.00 4.01
3858 3924 1.455849 CACCTTGGACCCTGAGCAA 59.544 57.895 0.00 0.00 0.00 3.91
3859 3925 2.528818 CCACCTTGGACCCTGAGCA 61.529 63.158 0.00 0.00 40.96 4.26
3860 3926 2.352805 CCACCTTGGACCCTGAGC 59.647 66.667 0.00 0.00 40.96 4.26
3861 3927 0.916358 ATCCCACCTTGGACCCTGAG 60.916 60.000 0.00 0.00 40.96 3.35
3862 3928 0.419865 TATCCCACCTTGGACCCTGA 59.580 55.000 0.00 0.00 40.96 3.86
3863 3929 1.143684 CATATCCCACCTTGGACCCTG 59.856 57.143 0.00 0.00 40.96 4.45
3864 3930 1.010793 TCATATCCCACCTTGGACCCT 59.989 52.381 0.00 0.00 40.96 4.34
3865 3931 1.421646 CTCATATCCCACCTTGGACCC 59.578 57.143 0.00 0.00 40.96 4.46
3866 3932 1.421646 CCTCATATCCCACCTTGGACC 59.578 57.143 0.00 0.00 40.96 4.46
3896 3962 2.170607 ACCCATGAATCCTCCTGTAACG 59.829 50.000 0.00 0.00 0.00 3.18
3900 3966 2.566746 AGAACCCATGAATCCTCCTGT 58.433 47.619 0.00 0.00 0.00 4.00
4068 4135 1.675641 AGCGTCCAACAGATTGCCC 60.676 57.895 0.00 0.00 34.17 5.36
4108 4175 7.872881 TCAGACAGCTATATAAAGAGGTAACG 58.127 38.462 0.00 0.00 46.39 3.18
4178 4290 6.015180 AGCATCTTGCCAAGAAATTTAACTCA 60.015 34.615 11.81 0.00 46.52 3.41
4231 4343 4.338879 ACCTCACAAATTCAATCCCAGAG 58.661 43.478 0.00 0.00 0.00 3.35
4233 4345 5.256474 ACTACCTCACAAATTCAATCCCAG 58.744 41.667 0.00 0.00 0.00 4.45
4312 4450 5.337578 ACACTGCTTTGGTACATTTTGTT 57.662 34.783 0.00 0.00 39.30 2.83
4328 4466 4.347000 TGGGGGAGTATATCTTAACACTGC 59.653 45.833 0.00 0.00 0.00 4.40
4438 4580 6.942976 ACTTGGTCGTTAATCTCTGGATTAA 58.057 36.000 6.98 6.98 46.15 1.40
4439 4581 6.540438 ACTTGGTCGTTAATCTCTGGATTA 57.460 37.500 0.00 0.00 41.75 1.75
4561 6128 5.748630 TCAATCAAATTCTCGGTGATACTCG 59.251 40.000 0.00 0.00 31.77 4.18
4628 6195 6.215121 TCTTTGAACGACTCGTAACCATTAA 58.785 36.000 4.11 0.00 39.99 1.40
4638 6205 3.575630 TGGATTCTCTTTGAACGACTCG 58.424 45.455 0.00 0.00 37.52 4.18
4671 6238 6.976088 ACCATTACAAATTTGTTCATCGACA 58.024 32.000 27.66 5.63 42.35 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.