Multiple sequence alignment - TraesCS5B01G133800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G133800 chr5B 100.000 3763 0 0 1 3763 250564474 250568236 0.000000e+00 6950.0
1 TraesCS5B01G133800 chr5B 97.183 142 2 2 1 141 227195210 227195070 4.860000e-59 239.0
2 TraesCS5B01G133800 chr5B 87.647 170 15 2 507 673 595288569 595288735 3.840000e-45 193.0
3 TraesCS5B01G133800 chr5B 86.207 174 22 2 615 788 638651895 638651724 1.780000e-43 187.0
4 TraesCS5B01G133800 chr5B 84.810 79 11 1 146 224 399584328 399584251 1.120000e-10 78.7
5 TraesCS5B01G133800 chr5A 97.104 2106 45 5 781 2874 304925508 304927609 0.000000e+00 3537.0
6 TraesCS5B01G133800 chr5A 90.705 667 55 2 3097 3763 304930946 304931605 0.000000e+00 881.0
7 TraesCS5B01G133800 chr5A 92.657 286 17 3 223 505 304925223 304925507 3.500000e-110 409.0
8 TraesCS5B01G133800 chr5A 92.357 157 6 2 2853 3003 304930371 304930527 6.330000e-53 219.0
9 TraesCS5B01G133800 chr5A 76.033 363 72 12 3267 3622 130083200 130082846 1.390000e-39 174.0
10 TraesCS5B01G133800 chr5A 80.952 105 18 1 3126 3228 573618374 573618478 8.660000e-12 82.4
11 TraesCS5B01G133800 chr5D 96.690 2115 46 4 783 2874 222436455 222434342 0.000000e+00 3496.0
12 TraesCS5B01G133800 chr5D 90.327 734 59 7 3033 3763 222433642 222432918 0.000000e+00 952.0
13 TraesCS5B01G133800 chr5D 93.814 291 13 3 220 505 222436745 222436455 2.080000e-117 433.0
14 TraesCS5B01G133800 chr5D 95.918 147 5 1 2853 2998 222434321 222434175 1.750000e-58 237.0
15 TraesCS5B01G133800 chr6B 84.155 284 41 2 504 787 149418757 149418478 4.790000e-69 272.0
16 TraesCS5B01G133800 chr6B 79.861 288 44 11 504 786 418070443 418070165 8.240000e-47 198.0
17 TraesCS5B01G133800 chr6B 86.792 159 17 3 519 673 228695144 228695302 1.390000e-39 174.0
18 TraesCS5B01G133800 chr1B 97.810 137 1 2 1 136 266207887 266207752 6.280000e-58 235.0
19 TraesCS5B01G133800 chr1B 94.631 149 7 1 1 148 40333794 40333942 2.920000e-56 230.0
20 TraesCS5B01G133800 chr1B 97.761 134 2 1 1 133 57208879 57208746 2.920000e-56 230.0
21 TraesCS5B01G133800 chr1B 97.761 134 1 2 1 133 193705756 193705888 2.920000e-56 230.0
22 TraesCS5B01G133800 chr1B 96.429 140 4 1 1 139 287742509 287742370 2.920000e-56 230.0
23 TraesCS5B01G133800 chr1B 86.628 172 19 3 503 673 450026995 450026827 1.780000e-43 187.0
24 TraesCS5B01G133800 chr1B 77.389 314 51 11 500 800 62546281 62546587 6.460000e-38 169.0
25 TraesCS5B01G133800 chr1B 100.000 30 0 0 307 336 593564146 593564117 5.250000e-04 56.5
26 TraesCS5B01G133800 chr3B 97.794 136 2 1 1 135 243255047 243254912 2.260000e-57 233.0
27 TraesCS5B01G133800 chr3B 95.775 142 5 1 1 141 335253102 335253243 1.050000e-55 228.0
28 TraesCS5B01G133800 chr3B 95.139 144 5 2 1 143 346450671 346450813 3.780000e-55 226.0
29 TraesCS5B01G133800 chr3D 81.081 296 43 10 504 795 607093874 607093588 1.360000e-54 224.0
30 TraesCS5B01G133800 chr3D 91.429 140 11 1 504 642 341502385 341502524 1.380000e-44 191.0
31 TraesCS5B01G133800 chr3D 88.667 150 12 4 504 649 125495250 125495102 1.070000e-40 178.0
32 TraesCS5B01G133800 chr3D 88.372 86 8 2 196 280 317796127 317796211 6.650000e-18 102.0
33 TraesCS5B01G133800 chr7A 81.961 255 35 9 511 763 162101206 162101451 4.930000e-49 206.0
34 TraesCS5B01G133800 chr7A 86.047 172 23 1 621 792 158664922 158665092 2.310000e-42 183.0
35 TraesCS5B01G133800 chr1D 85.128 195 28 1 592 786 461147134 461146941 8.240000e-47 198.0
36 TraesCS5B01G133800 chr1D 100.000 35 0 0 2999 3033 365898595 365898629 8.720000e-07 65.8
37 TraesCS5B01G133800 chr7D 88.889 153 16 1 637 789 89521138 89521289 1.780000e-43 187.0
38 TraesCS5B01G133800 chr7D 85.906 149 19 2 141 288 427146564 427146417 1.400000e-34 158.0
39 TraesCS5B01G133800 chr7D 80.537 149 17 6 141 288 334204594 334204457 1.850000e-18 104.0
40 TraesCS5B01G133800 chr2A 90.647 139 9 4 506 641 502330343 502330480 8.300000e-42 182.0
41 TraesCS5B01G133800 chr1A 74.603 378 86 8 3393 3763 27313726 27314100 1.400000e-34 158.0
42 TraesCS5B01G133800 chr7B 85.714 147 20 1 141 286 113572376 113572230 1.810000e-33 154.0
43 TraesCS5B01G133800 chr7B 89.286 56 5 1 146 200 332543271 332543326 6.740000e-08 69.4
44 TraesCS5B01G133800 chr4B 73.300 397 78 24 3376 3760 296292803 296293183 1.840000e-23 121.0
45 TraesCS5B01G133800 chr6D 82.051 117 17 3 3510 3624 400784055 400784169 3.090000e-16 97.1
46 TraesCS5B01G133800 chr2D 92.000 50 4 0 3709 3758 18753950 18753999 1.880000e-08 71.3
47 TraesCS5B01G133800 chr3A 100.000 29 0 0 496 524 661480661 661480633 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G133800 chr5B 250564474 250568236 3762 False 6950.0 6950 100.00000 1 3763 1 chr5B.!!$F1 3762
1 TraesCS5B01G133800 chr5A 304925223 304931605 6382 False 1261.5 3537 93.20575 223 3763 4 chr5A.!!$F2 3540
2 TraesCS5B01G133800 chr5D 222432918 222436745 3827 True 1279.5 3496 94.18725 220 3763 4 chr5D.!!$R1 3543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 550 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
545 551 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 F
547 553 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1667 1695 1.516603 GGTCAGGTACGCGAGCTTC 60.517 63.158 15.93 7.07 31.94 3.86 R
1820 1848 2.247437 GGCGGTGATGCGGAGATTC 61.247 63.158 0.00 0.00 35.06 2.52 R
2937 5753 1.800681 CGAATCGGAGGCCCAAAAC 59.199 57.895 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.823610 AGACGTAGGGCTGTTACTTCC 59.176 52.381 0.00 0.00 0.00 3.46
21 22 1.823610 GACGTAGGGCTGTTACTTCCT 59.176 52.381 0.00 0.00 0.00 3.36
22 23 1.823610 ACGTAGGGCTGTTACTTCCTC 59.176 52.381 0.00 0.00 0.00 3.71
23 24 1.136500 CGTAGGGCTGTTACTTCCTCC 59.864 57.143 0.00 0.00 0.00 4.30
24 25 1.136500 GTAGGGCTGTTACTTCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
25 26 0.252103 AGGGCTGTTACTTCCTCCGA 60.252 55.000 0.00 0.00 0.00 4.55
26 27 0.175989 GGGCTGTTACTTCCTCCGAG 59.824 60.000 0.00 0.00 0.00 4.63
27 28 1.183549 GGCTGTTACTTCCTCCGAGA 58.816 55.000 0.00 0.00 0.00 4.04
28 29 1.549170 GGCTGTTACTTCCTCCGAGAA 59.451 52.381 0.00 0.00 0.00 2.87
30 31 2.417515 GCTGTTACTTCCTCCGAGAAGG 60.418 54.545 12.46 4.01 46.24 3.46
31 32 2.166664 CTGTTACTTCCTCCGAGAAGGG 59.833 54.545 12.46 0.00 46.24 3.95
32 33 1.134759 GTTACTTCCTCCGAGAAGGGC 60.135 57.143 12.46 0.00 46.24 5.19
33 34 0.686769 TACTTCCTCCGAGAAGGGCC 60.687 60.000 0.00 0.00 46.24 5.80
34 35 1.687493 CTTCCTCCGAGAAGGGCCT 60.687 63.158 0.00 0.00 39.71 5.19
35 36 1.965754 CTTCCTCCGAGAAGGGCCTG 61.966 65.000 6.92 0.00 39.71 4.85
36 37 2.364317 CCTCCGAGAAGGGCCTGA 60.364 66.667 6.92 0.00 41.52 3.86
37 38 1.990060 CCTCCGAGAAGGGCCTGAA 60.990 63.158 6.92 0.00 41.52 3.02
38 39 1.219393 CTCCGAGAAGGGCCTGAAC 59.781 63.158 6.92 1.62 41.52 3.18
39 40 1.229209 TCCGAGAAGGGCCTGAACT 60.229 57.895 6.92 7.41 41.52 3.01
40 41 1.219393 CCGAGAAGGGCCTGAACTC 59.781 63.158 6.92 15.44 35.97 3.01
41 42 1.153745 CGAGAAGGGCCTGAACTCG 60.154 63.158 29.13 29.13 42.77 4.18
42 43 1.878656 CGAGAAGGGCCTGAACTCGT 61.879 60.000 31.25 9.99 43.19 4.18
43 44 1.183549 GAGAAGGGCCTGAACTCGTA 58.816 55.000 6.92 0.00 0.00 3.43
44 45 1.549170 GAGAAGGGCCTGAACTCGTAA 59.451 52.381 6.92 0.00 0.00 3.18
45 46 1.975680 AGAAGGGCCTGAACTCGTAAA 59.024 47.619 6.92 0.00 0.00 2.01
46 47 2.074576 GAAGGGCCTGAACTCGTAAAC 58.925 52.381 6.92 0.00 0.00 2.01
47 48 1.053424 AGGGCCTGAACTCGTAAACA 58.947 50.000 4.50 0.00 0.00 2.83
48 49 1.628846 AGGGCCTGAACTCGTAAACAT 59.371 47.619 4.50 0.00 0.00 2.71
49 50 2.007608 GGGCCTGAACTCGTAAACATC 58.992 52.381 0.84 0.00 0.00 3.06
50 51 2.354805 GGGCCTGAACTCGTAAACATCT 60.355 50.000 0.84 0.00 0.00 2.90
51 52 3.335579 GGCCTGAACTCGTAAACATCTT 58.664 45.455 0.00 0.00 0.00 2.40
52 53 3.125316 GGCCTGAACTCGTAAACATCTTG 59.875 47.826 0.00 0.00 0.00 3.02
53 54 3.424962 GCCTGAACTCGTAAACATCTTGC 60.425 47.826 0.00 0.00 0.00 4.01
54 55 3.181530 CCTGAACTCGTAAACATCTTGCG 60.182 47.826 0.00 0.00 0.00 4.85
55 56 3.386486 TGAACTCGTAAACATCTTGCGT 58.614 40.909 0.00 0.00 0.00 5.24
56 57 3.805422 TGAACTCGTAAACATCTTGCGTT 59.195 39.130 0.00 0.00 0.00 4.84
57 58 4.983538 TGAACTCGTAAACATCTTGCGTTA 59.016 37.500 0.00 0.00 0.00 3.18
58 59 4.898328 ACTCGTAAACATCTTGCGTTAC 57.102 40.909 0.00 0.00 0.00 2.50
59 60 4.300803 ACTCGTAAACATCTTGCGTTACA 58.699 39.130 0.00 0.00 0.00 2.41
60 61 4.746115 ACTCGTAAACATCTTGCGTTACAA 59.254 37.500 0.00 0.00 36.62 2.41
61 62 5.009048 TCGTAAACATCTTGCGTTACAAC 57.991 39.130 0.00 0.00 33.68 3.32
62 63 4.746115 TCGTAAACATCTTGCGTTACAACT 59.254 37.500 0.00 0.00 33.68 3.16
63 64 5.919707 TCGTAAACATCTTGCGTTACAACTA 59.080 36.000 0.00 0.00 33.68 2.24
64 65 6.005289 CGTAAACATCTTGCGTTACAACTAC 58.995 40.000 0.00 0.00 33.68 2.73
65 66 6.129009 CGTAAACATCTTGCGTTACAACTACT 60.129 38.462 0.00 0.00 33.68 2.57
66 67 6.613755 AAACATCTTGCGTTACAACTACTT 57.386 33.333 0.00 0.00 33.68 2.24
67 68 5.840940 ACATCTTGCGTTACAACTACTTC 57.159 39.130 0.00 0.00 33.68 3.01
68 69 5.294356 ACATCTTGCGTTACAACTACTTCA 58.706 37.500 0.00 0.00 33.68 3.02
69 70 5.932303 ACATCTTGCGTTACAACTACTTCAT 59.068 36.000 0.00 0.00 33.68 2.57
70 71 7.094631 ACATCTTGCGTTACAACTACTTCATA 58.905 34.615 0.00 0.00 33.68 2.15
71 72 7.275779 ACATCTTGCGTTACAACTACTTCATAG 59.724 37.037 0.00 0.00 36.89 2.23
72 73 5.575606 TCTTGCGTTACAACTACTTCATAGC 59.424 40.000 0.00 0.00 33.73 2.97
73 74 5.068234 TGCGTTACAACTACTTCATAGCT 57.932 39.130 0.00 0.00 33.73 3.32
74 75 6.198650 TGCGTTACAACTACTTCATAGCTA 57.801 37.500 0.00 0.00 33.73 3.32
75 76 6.263344 TGCGTTACAACTACTTCATAGCTAG 58.737 40.000 0.00 0.00 33.73 3.42
76 77 5.686397 GCGTTACAACTACTTCATAGCTAGG 59.314 44.000 0.00 0.00 33.73 3.02
77 78 6.459298 GCGTTACAACTACTTCATAGCTAGGA 60.459 42.308 3.48 3.48 33.73 2.94
78 79 7.649973 CGTTACAACTACTTCATAGCTAGGAT 58.350 38.462 9.22 0.00 33.73 3.24
79 80 7.804129 CGTTACAACTACTTCATAGCTAGGATC 59.196 40.741 9.22 0.00 33.73 3.36
80 81 8.852135 GTTACAACTACTTCATAGCTAGGATCT 58.148 37.037 9.22 0.00 33.73 2.75
81 82 7.906199 ACAACTACTTCATAGCTAGGATCTT 57.094 36.000 9.22 0.00 33.73 2.40
82 83 7.721402 ACAACTACTTCATAGCTAGGATCTTG 58.279 38.462 9.22 8.66 33.73 3.02
83 84 6.339587 ACTACTTCATAGCTAGGATCTTGC 57.660 41.667 9.22 0.00 33.73 4.01
84 85 4.615588 ACTTCATAGCTAGGATCTTGCC 57.384 45.455 9.22 0.00 33.03 4.52
85 86 4.230455 ACTTCATAGCTAGGATCTTGCCT 58.770 43.478 9.22 0.00 42.15 4.75
86 87 4.283212 ACTTCATAGCTAGGATCTTGCCTC 59.717 45.833 9.22 0.00 39.50 4.70
87 88 4.125124 TCATAGCTAGGATCTTGCCTCT 57.875 45.455 3.48 0.00 39.50 3.69
88 89 4.085733 TCATAGCTAGGATCTTGCCTCTC 58.914 47.826 3.48 0.00 39.50 3.20
89 90 1.715785 AGCTAGGATCTTGCCTCTCC 58.284 55.000 0.00 0.00 39.50 3.71
90 91 1.062581 AGCTAGGATCTTGCCTCTCCA 60.063 52.381 0.00 0.00 39.50 3.86
91 92 1.977129 GCTAGGATCTTGCCTCTCCAT 59.023 52.381 0.00 0.00 39.50 3.41
92 93 2.371510 GCTAGGATCTTGCCTCTCCATT 59.628 50.000 0.00 0.00 39.50 3.16
93 94 3.556843 GCTAGGATCTTGCCTCTCCATTC 60.557 52.174 0.00 0.00 39.50 2.67
94 95 1.773653 AGGATCTTGCCTCTCCATTCC 59.226 52.381 0.00 0.00 30.76 3.01
95 96 1.773653 GGATCTTGCCTCTCCATTCCT 59.226 52.381 0.00 0.00 0.00 3.36
96 97 2.975489 GGATCTTGCCTCTCCATTCCTA 59.025 50.000 0.00 0.00 0.00 2.94
97 98 3.244387 GGATCTTGCCTCTCCATTCCTAC 60.244 52.174 0.00 0.00 0.00 3.18
98 99 2.119495 TCTTGCCTCTCCATTCCTACC 58.881 52.381 0.00 0.00 0.00 3.18
99 100 2.122768 CTTGCCTCTCCATTCCTACCT 58.877 52.381 0.00 0.00 0.00 3.08
100 101 1.794714 TGCCTCTCCATTCCTACCTC 58.205 55.000 0.00 0.00 0.00 3.85
101 102 1.052617 GCCTCTCCATTCCTACCTCC 58.947 60.000 0.00 0.00 0.00 4.30
102 103 1.723288 CCTCTCCATTCCTACCTCCC 58.277 60.000 0.00 0.00 0.00 4.30
103 104 1.221781 CCTCTCCATTCCTACCTCCCT 59.778 57.143 0.00 0.00 0.00 4.20
104 105 2.451273 CCTCTCCATTCCTACCTCCCTA 59.549 54.545 0.00 0.00 0.00 3.53
105 106 3.078305 CCTCTCCATTCCTACCTCCCTAT 59.922 52.174 0.00 0.00 0.00 2.57
106 107 4.451460 CCTCTCCATTCCTACCTCCCTATT 60.451 50.000 0.00 0.00 0.00 1.73
107 108 4.753186 TCTCCATTCCTACCTCCCTATTC 58.247 47.826 0.00 0.00 0.00 1.75
108 109 4.423960 TCTCCATTCCTACCTCCCTATTCT 59.576 45.833 0.00 0.00 0.00 2.40
109 110 5.620021 TCTCCATTCCTACCTCCCTATTCTA 59.380 44.000 0.00 0.00 0.00 2.10
110 111 5.652324 TCCATTCCTACCTCCCTATTCTAC 58.348 45.833 0.00 0.00 0.00 2.59
111 112 5.378985 TCCATTCCTACCTCCCTATTCTACT 59.621 44.000 0.00 0.00 0.00 2.57
112 113 5.482175 CCATTCCTACCTCCCTATTCTACTG 59.518 48.000 0.00 0.00 0.00 2.74
113 114 5.745988 TTCCTACCTCCCTATTCTACTGT 57.254 43.478 0.00 0.00 0.00 3.55
114 115 5.321934 TCCTACCTCCCTATTCTACTGTC 57.678 47.826 0.00 0.00 0.00 3.51
115 116 4.730392 TCCTACCTCCCTATTCTACTGTCA 59.270 45.833 0.00 0.00 0.00 3.58
116 117 5.074115 CCTACCTCCCTATTCTACTGTCAG 58.926 50.000 0.00 0.00 0.00 3.51
117 118 4.883021 ACCTCCCTATTCTACTGTCAGA 57.117 45.455 6.91 0.00 0.00 3.27
118 119 4.538738 ACCTCCCTATTCTACTGTCAGAC 58.461 47.826 6.91 0.00 0.00 3.51
119 120 4.230964 ACCTCCCTATTCTACTGTCAGACT 59.769 45.833 6.91 0.00 0.00 3.24
120 121 5.205056 CCTCCCTATTCTACTGTCAGACTT 58.795 45.833 6.91 0.00 0.00 3.01
121 122 6.068971 ACCTCCCTATTCTACTGTCAGACTTA 60.069 42.308 6.91 0.00 0.00 2.24
122 123 6.488683 CCTCCCTATTCTACTGTCAGACTTAG 59.511 46.154 6.91 3.09 0.00 2.18
123 124 7.209340 TCCCTATTCTACTGTCAGACTTAGA 57.791 40.000 6.91 5.38 0.00 2.10
124 125 7.640313 TCCCTATTCTACTGTCAGACTTAGAA 58.360 38.462 19.56 19.56 35.55 2.10
125 126 7.556996 TCCCTATTCTACTGTCAGACTTAGAAC 59.443 40.741 19.62 0.00 34.27 3.01
126 127 7.201839 CCCTATTCTACTGTCAGACTTAGAACC 60.202 44.444 19.62 0.00 34.27 3.62
127 128 7.339721 CCTATTCTACTGTCAGACTTAGAACCA 59.660 40.741 19.62 13.16 34.27 3.67
128 129 5.961396 TCTACTGTCAGACTTAGAACCAC 57.039 43.478 6.91 0.00 0.00 4.16
129 130 3.644884 ACTGTCAGACTTAGAACCACG 57.355 47.619 6.91 0.00 0.00 4.94
130 131 3.220110 ACTGTCAGACTTAGAACCACGA 58.780 45.455 6.91 0.00 0.00 4.35
131 132 3.004524 ACTGTCAGACTTAGAACCACGAC 59.995 47.826 6.91 0.00 0.00 4.34
132 133 2.953648 TGTCAGACTTAGAACCACGACA 59.046 45.455 1.31 0.00 0.00 4.35
133 134 3.243301 TGTCAGACTTAGAACCACGACAC 60.243 47.826 1.31 0.00 0.00 3.67
134 135 2.295349 TCAGACTTAGAACCACGACACC 59.705 50.000 0.00 0.00 0.00 4.16
135 136 2.296471 CAGACTTAGAACCACGACACCT 59.704 50.000 0.00 0.00 0.00 4.00
136 137 3.504906 CAGACTTAGAACCACGACACCTA 59.495 47.826 0.00 0.00 0.00 3.08
137 138 3.505293 AGACTTAGAACCACGACACCTAC 59.495 47.826 0.00 0.00 0.00 3.18
138 139 3.494332 ACTTAGAACCACGACACCTACT 58.506 45.455 0.00 0.00 0.00 2.57
139 140 4.655963 ACTTAGAACCACGACACCTACTA 58.344 43.478 0.00 0.00 0.00 1.82
140 141 4.457257 ACTTAGAACCACGACACCTACTAC 59.543 45.833 0.00 0.00 0.00 2.73
141 142 1.808945 AGAACCACGACACCTACTACG 59.191 52.381 0.00 0.00 0.00 3.51
142 143 0.242017 AACCACGACACCTACTACGC 59.758 55.000 0.00 0.00 0.00 4.42
143 144 1.138247 CCACGACACCTACTACGCC 59.862 63.158 0.00 0.00 0.00 5.68
144 145 1.138247 CACGACACCTACTACGCCC 59.862 63.158 0.00 0.00 0.00 6.13
145 146 2.048603 ACGACACCTACTACGCCCC 61.049 63.158 0.00 0.00 0.00 5.80
146 147 2.779033 CGACACCTACTACGCCCCC 61.779 68.421 0.00 0.00 0.00 5.40
147 148 1.683365 GACACCTACTACGCCCCCA 60.683 63.158 0.00 0.00 0.00 4.96
148 149 1.953231 GACACCTACTACGCCCCCAC 61.953 65.000 0.00 0.00 0.00 4.61
149 150 2.364710 ACCTACTACGCCCCCACC 60.365 66.667 0.00 0.00 0.00 4.61
150 151 3.159347 CCTACTACGCCCCCACCC 61.159 72.222 0.00 0.00 0.00 4.61
151 152 3.534056 CTACTACGCCCCCACCCG 61.534 72.222 0.00 0.00 0.00 5.28
152 153 4.380945 TACTACGCCCCCACCCGT 62.381 66.667 0.00 0.00 41.11 5.28
153 154 2.909457 CTACTACGCCCCCACCCGTA 62.909 65.000 0.00 0.00 38.75 4.02
154 155 2.506884 TACTACGCCCCCACCCGTAA 62.507 60.000 0.00 0.00 39.16 3.18
155 156 3.375472 CTACGCCCCCACCCGTAAC 62.375 68.421 0.00 0.00 39.16 2.50
159 160 2.040935 CCCCCACCCGTAACCCTA 59.959 66.667 0.00 0.00 0.00 3.53
160 161 1.616025 CCCCCACCCGTAACCCTAA 60.616 63.158 0.00 0.00 0.00 2.69
161 162 1.629181 CCCCCACCCGTAACCCTAAG 61.629 65.000 0.00 0.00 0.00 2.18
162 163 0.618393 CCCCACCCGTAACCCTAAGA 60.618 60.000 0.00 0.00 0.00 2.10
163 164 1.503800 CCCACCCGTAACCCTAAGAT 58.496 55.000 0.00 0.00 0.00 2.40
164 165 2.681422 CCCACCCGTAACCCTAAGATA 58.319 52.381 0.00 0.00 0.00 1.98
165 166 2.631545 CCCACCCGTAACCCTAAGATAG 59.368 54.545 0.00 0.00 0.00 2.08
166 167 3.569491 CCACCCGTAACCCTAAGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
167 168 4.158015 CCACCCGTAACCCTAAGATAGAT 58.842 47.826 0.00 0.00 0.00 1.98
168 169 5.327732 CCACCCGTAACCCTAAGATAGATA 58.672 45.833 0.00 0.00 0.00 1.98
169 170 5.776716 CCACCCGTAACCCTAAGATAGATAA 59.223 44.000 0.00 0.00 0.00 1.75
170 171 6.439692 CCACCCGTAACCCTAAGATAGATAAT 59.560 42.308 0.00 0.00 0.00 1.28
171 172 7.321153 CACCCGTAACCCTAAGATAGATAATG 58.679 42.308 0.00 0.00 0.00 1.90
172 173 6.439692 ACCCGTAACCCTAAGATAGATAATGG 59.560 42.308 0.00 0.00 0.00 3.16
173 174 6.127140 CCCGTAACCCTAAGATAGATAATGGG 60.127 46.154 0.00 0.00 39.06 4.00
175 176 7.616935 CCGTAACCCTAAGATAGATAATGGGTA 59.383 40.741 0.00 0.00 44.73 3.69
176 177 8.684520 CGTAACCCTAAGATAGATAATGGGTAG 58.315 40.741 0.00 0.00 44.73 3.18
177 178 7.497773 AACCCTAAGATAGATAATGGGTAGC 57.502 40.000 0.00 0.00 44.73 3.58
178 179 5.965091 ACCCTAAGATAGATAATGGGTAGCC 59.035 44.000 3.29 3.29 43.80 3.93
179 180 5.367060 CCCTAAGATAGATAATGGGTAGCCC 59.633 48.000 8.85 0.62 45.71 5.19
180 181 6.206042 CCTAAGATAGATAATGGGTAGCCCT 58.794 44.000 8.85 0.00 45.70 5.19
181 182 6.325286 CCTAAGATAGATAATGGGTAGCCCTC 59.675 46.154 8.85 0.31 45.70 4.30
182 183 4.625963 AGATAGATAATGGGTAGCCCTCC 58.374 47.826 8.85 0.00 45.70 4.30
183 184 2.815357 AGATAATGGGTAGCCCTCCA 57.185 50.000 8.85 0.00 45.70 3.86
184 185 2.625639 AGATAATGGGTAGCCCTCCAG 58.374 52.381 8.85 0.00 45.70 3.86
185 186 1.003696 GATAATGGGTAGCCCTCCAGC 59.996 57.143 8.85 0.00 45.70 4.85
186 187 1.407656 TAATGGGTAGCCCTCCAGCG 61.408 60.000 8.85 0.00 45.70 5.18
187 188 3.696518 ATGGGTAGCCCTCCAGCGA 62.697 63.158 8.85 0.00 45.70 4.93
188 189 3.541713 GGGTAGCCCTCCAGCGAG 61.542 72.222 0.00 0.00 41.34 5.03
189 190 4.228567 GGTAGCCCTCCAGCGAGC 62.229 72.222 0.00 0.00 38.01 5.03
190 191 4.228567 GTAGCCCTCCAGCGAGCC 62.229 72.222 0.00 0.00 38.01 4.70
195 196 3.721706 CCTCCAGCGAGCCCCTTT 61.722 66.667 0.00 0.00 34.49 3.11
196 197 2.124942 CTCCAGCGAGCCCCTTTC 60.125 66.667 0.00 0.00 0.00 2.62
197 198 2.607750 TCCAGCGAGCCCCTTTCT 60.608 61.111 0.00 0.00 0.00 2.52
198 199 2.190488 CTCCAGCGAGCCCCTTTCTT 62.190 60.000 0.00 0.00 0.00 2.52
199 200 1.746991 CCAGCGAGCCCCTTTCTTC 60.747 63.158 0.00 0.00 0.00 2.87
200 201 1.298014 CAGCGAGCCCCTTTCTTCT 59.702 57.895 0.00 0.00 0.00 2.85
201 202 0.322008 CAGCGAGCCCCTTTCTTCTT 60.322 55.000 0.00 0.00 0.00 2.52
202 203 0.035915 AGCGAGCCCCTTTCTTCTTC 60.036 55.000 0.00 0.00 0.00 2.87
203 204 0.035915 GCGAGCCCCTTTCTTCTTCT 60.036 55.000 0.00 0.00 0.00 2.85
204 205 1.611936 GCGAGCCCCTTTCTTCTTCTT 60.612 52.381 0.00 0.00 0.00 2.52
205 206 2.784347 CGAGCCCCTTTCTTCTTCTTT 58.216 47.619 0.00 0.00 0.00 2.52
206 207 2.485814 CGAGCCCCTTTCTTCTTCTTTG 59.514 50.000 0.00 0.00 0.00 2.77
207 208 3.491342 GAGCCCCTTTCTTCTTCTTTGT 58.509 45.455 0.00 0.00 0.00 2.83
208 209 3.891977 GAGCCCCTTTCTTCTTCTTTGTT 59.108 43.478 0.00 0.00 0.00 2.83
209 210 3.891977 AGCCCCTTTCTTCTTCTTTGTTC 59.108 43.478 0.00 0.00 0.00 3.18
210 211 3.005897 GCCCCTTTCTTCTTCTTTGTTCC 59.994 47.826 0.00 0.00 0.00 3.62
211 212 3.574396 CCCCTTTCTTCTTCTTTGTTCCC 59.426 47.826 0.00 0.00 0.00 3.97
212 213 4.474394 CCCTTTCTTCTTCTTTGTTCCCT 58.526 43.478 0.00 0.00 0.00 4.20
213 214 4.520874 CCCTTTCTTCTTCTTTGTTCCCTC 59.479 45.833 0.00 0.00 0.00 4.30
214 215 4.520874 CCTTTCTTCTTCTTTGTTCCCTCC 59.479 45.833 0.00 0.00 0.00 4.30
215 216 3.402628 TCTTCTTCTTTGTTCCCTCCG 57.597 47.619 0.00 0.00 0.00 4.63
216 217 2.038557 TCTTCTTCTTTGTTCCCTCCGG 59.961 50.000 0.00 0.00 0.00 5.14
217 218 0.036306 TCTTCTTTGTTCCCTCCGGC 59.964 55.000 0.00 0.00 0.00 6.13
218 219 1.298859 CTTCTTTGTTCCCTCCGGCG 61.299 60.000 0.00 0.00 0.00 6.46
247 248 5.852827 TCAAAAATCAACTGACCCCAATTC 58.147 37.500 0.00 0.00 0.00 2.17
248 249 5.365025 TCAAAAATCAACTGACCCCAATTCA 59.635 36.000 0.00 0.00 0.00 2.57
277 278 7.329588 TCAGTCGACTGTCATTTAGCTAATA 57.670 36.000 37.21 15.95 44.12 0.98
401 405 4.086457 CCAAAGGGTTTACACTTATGCCT 58.914 43.478 0.00 0.00 38.96 4.75
467 471 0.909623 ACACCTTTCATCTACCCCGG 59.090 55.000 0.00 0.00 0.00 5.73
512 518 9.607333 TCATCTTATTTATCATGTACTCCCTCT 57.393 33.333 0.00 0.00 0.00 3.69
513 519 9.650539 CATCTTATTTATCATGTACTCCCTCTG 57.349 37.037 0.00 0.00 0.00 3.35
514 520 8.783660 TCTTATTTATCATGTACTCCCTCTGT 57.216 34.615 0.00 0.00 0.00 3.41
515 521 9.213777 TCTTATTTATCATGTACTCCCTCTGTT 57.786 33.333 0.00 0.00 0.00 3.16
516 522 9.482627 CTTATTTATCATGTACTCCCTCTGTTC 57.517 37.037 0.00 0.00 0.00 3.18
517 523 5.871396 TTATCATGTACTCCCTCTGTTCC 57.129 43.478 0.00 0.00 0.00 3.62
518 524 3.474798 TCATGTACTCCCTCTGTTCCT 57.525 47.619 0.00 0.00 0.00 3.36
519 525 4.603094 TCATGTACTCCCTCTGTTCCTA 57.397 45.455 0.00 0.00 0.00 2.94
520 526 4.942944 TCATGTACTCCCTCTGTTCCTAA 58.057 43.478 0.00 0.00 0.00 2.69
521 527 5.338632 TCATGTACTCCCTCTGTTCCTAAA 58.661 41.667 0.00 0.00 0.00 1.85
522 528 5.964477 TCATGTACTCCCTCTGTTCCTAAAT 59.036 40.000 0.00 0.00 0.00 1.40
523 529 7.130099 TCATGTACTCCCTCTGTTCCTAAATA 58.870 38.462 0.00 0.00 0.00 1.40
524 530 7.287927 TCATGTACTCCCTCTGTTCCTAAATAG 59.712 40.741 0.00 0.00 0.00 1.73
525 531 6.500336 TGTACTCCCTCTGTTCCTAAATAGT 58.500 40.000 0.00 0.00 0.00 2.12
526 532 7.645942 TGTACTCCCTCTGTTCCTAAATAGTA 58.354 38.462 0.00 0.00 0.00 1.82
527 533 7.559170 TGTACTCCCTCTGTTCCTAAATAGTAC 59.441 40.741 0.00 0.00 37.28 2.73
528 534 6.743788 ACTCCCTCTGTTCCTAAATAGTACT 58.256 40.000 0.00 0.00 0.00 2.73
529 535 6.834969 ACTCCCTCTGTTCCTAAATAGTACTC 59.165 42.308 0.00 0.00 0.00 2.59
530 536 6.134754 TCCCTCTGTTCCTAAATAGTACTCC 58.865 44.000 0.00 0.00 0.00 3.85
531 537 5.304871 CCCTCTGTTCCTAAATAGTACTCCC 59.695 48.000 0.00 0.00 0.00 4.30
532 538 6.137559 CCTCTGTTCCTAAATAGTACTCCCT 58.862 44.000 0.00 0.00 0.00 4.20
533 539 6.265876 CCTCTGTTCCTAAATAGTACTCCCTC 59.734 46.154 0.00 0.00 0.00 4.30
534 540 6.134754 TCTGTTCCTAAATAGTACTCCCTCC 58.865 44.000 0.00 0.00 0.00 4.30
535 541 4.891756 TGTTCCTAAATAGTACTCCCTCCG 59.108 45.833 0.00 0.00 0.00 4.63
536 542 4.803329 TCCTAAATAGTACTCCCTCCGT 57.197 45.455 0.00 0.00 0.00 4.69
537 543 4.723309 TCCTAAATAGTACTCCCTCCGTC 58.277 47.826 0.00 0.00 0.00 4.79
538 544 3.825585 CCTAAATAGTACTCCCTCCGTCC 59.174 52.174 0.00 0.00 0.00 4.79
539 545 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
540 546 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
541 547 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
542 548 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
543 549 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
544 550 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
545 551 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
546 552 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
547 553 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
548 554 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
549 555 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
550 556 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
551 557 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
552 558 2.928116 CTCCGTCCGGAAATACTTGTTC 59.072 50.000 5.23 0.00 44.66 3.18
553 559 2.564062 TCCGTCCGGAAATACTTGTTCT 59.436 45.455 5.23 0.00 42.05 3.01
554 560 2.928116 CCGTCCGGAAATACTTGTTCTC 59.072 50.000 5.23 0.00 37.50 2.87
555 561 3.581755 CGTCCGGAAATACTTGTTCTCA 58.418 45.455 5.23 0.00 0.00 3.27
556 562 3.991773 CGTCCGGAAATACTTGTTCTCAA 59.008 43.478 5.23 0.00 0.00 3.02
557 563 4.449743 CGTCCGGAAATACTTGTTCTCAAA 59.550 41.667 5.23 0.00 32.87 2.69
558 564 5.049954 CGTCCGGAAATACTTGTTCTCAAAA 60.050 40.000 5.23 0.00 32.87 2.44
559 565 6.348213 CGTCCGGAAATACTTGTTCTCAAAAT 60.348 38.462 5.23 0.00 32.87 1.82
560 566 6.801862 GTCCGGAAATACTTGTTCTCAAAATG 59.198 38.462 5.23 0.00 32.87 2.32
561 567 6.072175 TCCGGAAATACTTGTTCTCAAAATGG 60.072 38.462 0.00 0.00 32.87 3.16
562 568 6.072175 CCGGAAATACTTGTTCTCAAAATGGA 60.072 38.462 0.00 0.00 32.87 3.41
563 569 7.362920 CCGGAAATACTTGTTCTCAAAATGGAT 60.363 37.037 0.00 0.00 32.87 3.41
564 570 8.673711 CGGAAATACTTGTTCTCAAAATGGATA 58.326 33.333 0.00 0.00 32.87 2.59
627 633 8.438676 AATCATTTCTAGGACAAGTATTTCCG 57.561 34.615 0.00 0.00 36.95 4.30
628 634 6.346096 TCATTTCTAGGACAAGTATTTCCGG 58.654 40.000 0.00 0.00 36.95 5.14
629 635 6.155565 TCATTTCTAGGACAAGTATTTCCGGA 59.844 38.462 0.00 0.00 36.95 5.14
630 636 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
631 637 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
632 638 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
633 639 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
634 640 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
635 641 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
636 642 1.479323 CAAGTATTTCCGGACGGAGGA 59.521 52.381 13.64 7.39 46.06 3.71
637 643 1.856629 AGTATTTCCGGACGGAGGAA 58.143 50.000 13.64 6.93 46.06 3.36
641 647 3.602104 TTCCGGACGGAGGAAGTAT 57.398 52.632 13.64 0.00 46.06 2.12
642 648 2.734755 TTCCGGACGGAGGAAGTATA 57.265 50.000 13.64 0.00 46.06 1.47
643 649 2.965671 TCCGGACGGAGGAAGTATAT 57.034 50.000 9.76 0.00 39.76 0.86
644 650 2.511659 TCCGGACGGAGGAAGTATATG 58.488 52.381 9.76 0.00 39.76 1.78
645 651 2.158564 TCCGGACGGAGGAAGTATATGT 60.159 50.000 9.76 0.00 39.76 2.29
646 652 2.228343 CCGGACGGAGGAAGTATATGTC 59.772 54.545 4.40 0.00 37.50 3.06
647 653 3.147629 CGGACGGAGGAAGTATATGTCT 58.852 50.000 0.00 0.00 0.00 3.41
648 654 3.568853 CGGACGGAGGAAGTATATGTCTT 59.431 47.826 0.00 0.00 0.00 3.01
649 655 4.037684 CGGACGGAGGAAGTATATGTCTTT 59.962 45.833 0.00 0.00 0.00 2.52
650 656 5.530712 GGACGGAGGAAGTATATGTCTTTC 58.469 45.833 0.00 0.00 0.00 2.62
651 657 5.509332 GGACGGAGGAAGTATATGTCTTTCC 60.509 48.000 0.00 0.00 0.00 3.13
652 658 4.960469 ACGGAGGAAGTATATGTCTTTCCA 59.040 41.667 5.07 0.00 0.00 3.53
653 659 5.069251 ACGGAGGAAGTATATGTCTTTCCAG 59.931 44.000 5.07 0.00 0.00 3.86
654 660 5.302059 CGGAGGAAGTATATGTCTTTCCAGA 59.698 44.000 5.07 0.00 0.00 3.86
655 661 6.183360 CGGAGGAAGTATATGTCTTTCCAGAA 60.183 42.308 5.07 0.00 0.00 3.02
656 662 7.565680 GGAGGAAGTATATGTCTTTCCAGAAA 58.434 38.462 5.07 0.00 0.00 2.52
657 663 8.214364 GGAGGAAGTATATGTCTTTCCAGAAAT 58.786 37.037 5.07 0.00 31.23 2.17
658 664 9.620259 GAGGAAGTATATGTCTTTCCAGAAATT 57.380 33.333 5.07 0.00 28.89 1.82
659 665 9.981460 AGGAAGTATATGTCTTTCCAGAAATTT 57.019 29.630 5.07 0.00 28.89 1.82
666 672 9.880157 ATATGTCTTTCCAGAAATTTCAATTGG 57.120 29.630 19.99 17.51 28.89 3.16
667 673 7.358770 TGTCTTTCCAGAAATTTCAATTGGA 57.641 32.000 18.82 18.82 0.00 3.53
668 674 7.209475 TGTCTTTCCAGAAATTTCAATTGGAC 58.791 34.615 21.26 18.39 0.00 4.02
669 675 7.069826 TGTCTTTCCAGAAATTTCAATTGGACT 59.930 33.333 21.26 0.00 0.00 3.85
670 676 8.576442 GTCTTTCCAGAAATTTCAATTGGACTA 58.424 33.333 21.26 13.96 0.00 2.59
671 677 8.576442 TCTTTCCAGAAATTTCAATTGGACTAC 58.424 33.333 21.26 0.00 0.00 2.73
672 678 7.831691 TTCCAGAAATTTCAATTGGACTACA 57.168 32.000 21.26 9.10 0.00 2.74
673 679 7.831691 TCCAGAAATTTCAATTGGACTACAA 57.168 32.000 18.82 2.04 44.54 2.41
674 680 7.657336 TCCAGAAATTTCAATTGGACTACAAC 58.343 34.615 18.82 0.00 42.94 3.32
675 681 7.286546 TCCAGAAATTTCAATTGGACTACAACA 59.713 33.333 18.82 0.90 42.94 3.33
676 682 8.090214 CCAGAAATTTCAATTGGACTACAACAT 58.910 33.333 19.99 0.00 42.94 2.71
684 690 8.607441 TCAATTGGACTACAACATATAGATGC 57.393 34.615 5.42 0.00 42.94 3.91
685 691 8.210265 TCAATTGGACTACAACATATAGATGCA 58.790 33.333 5.42 0.00 42.94 3.96
686 692 9.006839 CAATTGGACTACAACATATAGATGCAT 57.993 33.333 0.00 0.00 42.94 3.96
687 693 7.967890 TTGGACTACAACATATAGATGCATG 57.032 36.000 2.46 0.00 36.43 4.06
688 694 7.066307 TGGACTACAACATATAGATGCATGT 57.934 36.000 2.46 1.37 38.92 3.21
689 695 8.189119 TGGACTACAACATATAGATGCATGTA 57.811 34.615 2.46 4.50 37.51 2.29
691 697 8.523658 GGACTACAACATATAGATGCATGTAGA 58.476 37.037 30.75 12.04 46.91 2.59
692 698 9.347934 GACTACAACATATAGATGCATGTAGAC 57.652 37.037 30.75 25.25 46.91 2.59
693 699 8.860088 ACTACAACATATAGATGCATGTAGACA 58.140 33.333 30.75 11.24 46.91 3.41
694 700 9.866798 CTACAACATATAGATGCATGTAGACAT 57.133 33.333 25.22 0.00 46.91 3.06
723 729 9.677567 TTTAAACTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 0.00 3.68
724 730 7.516198 AAACTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 0.00 3.91
725 731 7.516198 AACTGTAGATTCACTCATTTTGCTT 57.484 32.000 0.00 0.00 0.00 3.91
726 732 7.138692 ACTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 0.00 3.86
727 733 6.128445 ACTGTAGATTCACTCATTTTGCTTCG 60.128 38.462 0.00 0.00 0.00 3.79
728 734 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
729 735 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
730 736 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
731 737 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
732 738 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
733 739 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
734 740 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
735 741 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
736 742 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
737 743 6.311445 CACTCATTTTGCTTCGTATGTAGTCT 59.689 38.462 0.00 0.00 0.00 3.24
738 744 6.531948 ACTCATTTTGCTTCGTATGTAGTCTC 59.468 38.462 0.00 0.00 0.00 3.36
739 745 6.631016 TCATTTTGCTTCGTATGTAGTCTCT 58.369 36.000 0.00 0.00 0.00 3.10
740 746 7.097192 TCATTTTGCTTCGTATGTAGTCTCTT 58.903 34.615 0.00 0.00 0.00 2.85
741 747 6.706055 TTTTGCTTCGTATGTAGTCTCTTG 57.294 37.500 0.00 0.00 0.00 3.02
742 748 5.386958 TTGCTTCGTATGTAGTCTCTTGT 57.613 39.130 0.00 0.00 0.00 3.16
743 749 5.386958 TGCTTCGTATGTAGTCTCTTGTT 57.613 39.130 0.00 0.00 0.00 2.83
744 750 5.161358 TGCTTCGTATGTAGTCTCTTGTTG 58.839 41.667 0.00 0.00 0.00 3.33
745 751 5.048294 TGCTTCGTATGTAGTCTCTTGTTGA 60.048 40.000 0.00 0.00 0.00 3.18
746 752 5.862323 GCTTCGTATGTAGTCTCTTGTTGAA 59.138 40.000 0.00 0.00 0.00 2.69
747 753 6.365247 GCTTCGTATGTAGTCTCTTGTTGAAA 59.635 38.462 0.00 0.00 0.00 2.69
748 754 7.063544 GCTTCGTATGTAGTCTCTTGTTGAAAT 59.936 37.037 0.00 0.00 0.00 2.17
749 755 8.827177 TTCGTATGTAGTCTCTTGTTGAAATT 57.173 30.769 0.00 0.00 0.00 1.82
750 756 8.827177 TCGTATGTAGTCTCTTGTTGAAATTT 57.173 30.769 0.00 0.00 0.00 1.82
751 757 9.268268 TCGTATGTAGTCTCTTGTTGAAATTTT 57.732 29.630 0.00 0.00 0.00 1.82
752 758 9.878599 CGTATGTAGTCTCTTGTTGAAATTTTT 57.121 29.630 0.00 0.00 0.00 1.94
782 788 8.857694 AAAACTTATATTTGAGAACGAAGGGA 57.142 30.769 0.00 0.00 0.00 4.20
783 789 8.494016 AAACTTATATTTGAGAACGAAGGGAG 57.506 34.615 0.00 0.00 0.00 4.30
784 790 7.184067 ACTTATATTTGAGAACGAAGGGAGT 57.816 36.000 0.00 0.00 0.00 3.85
785 791 8.302515 ACTTATATTTGAGAACGAAGGGAGTA 57.697 34.615 0.00 0.00 0.00 2.59
786 792 8.925338 ACTTATATTTGAGAACGAAGGGAGTAT 58.075 33.333 0.00 0.00 0.00 2.12
822 828 7.981225 AGCGGCAGATTTATGACAAAATTTTAT 59.019 29.630 2.44 0.00 0.00 1.40
1068 1074 0.251832 AGAGACCCGAGGTGACACAT 60.252 55.000 8.08 0.00 35.25 3.21
1132 1138 2.393764 CCATTGTTGTTGCTTCGAACC 58.606 47.619 0.00 0.00 0.00 3.62
1171 1178 1.001641 GCCCATGGCTTGACTCACT 60.002 57.895 6.09 0.00 46.69 3.41
1559 1587 3.749064 CTGGCCTGCAAGCTGCTG 61.749 66.667 7.34 8.35 45.31 4.41
1667 1695 1.811266 CGACATGCTCCCGTTCCTG 60.811 63.158 0.00 0.00 0.00 3.86
1701 1729 2.282110 CCACCAACCACGCCATCA 60.282 61.111 0.00 0.00 0.00 3.07
1931 1959 1.568025 GTTCCAGTTCAACGCCGTC 59.432 57.895 0.00 0.00 0.00 4.79
1958 1986 0.460987 GGCTCGAGGACATGGACTTG 60.461 60.000 15.58 0.00 0.00 3.16
2094 2122 3.144120 CTCACCCCGCTCCAGATCG 62.144 68.421 0.00 0.00 0.00 3.69
2372 2400 1.334243 GACGAGGCGCTCAACTACTAT 59.666 52.381 7.64 0.00 0.00 2.12
2714 2742 4.415332 CTGTACGCCGTCACCGCT 62.415 66.667 0.00 0.00 0.00 5.52
2937 5753 7.967890 AAAAGCTTTAAAATCCAGGTGAATG 57.032 32.000 13.10 0.00 0.00 2.67
2979 5795 5.163733 GGTTCGACAACTTTGGTGTTTCTTA 60.164 40.000 0.00 0.00 32.50 2.10
3003 5819 3.132289 TCCCATCAACGGTCAACTAGATC 59.868 47.826 0.00 0.00 0.00 2.75
3004 5820 3.458189 CCATCAACGGTCAACTAGATCC 58.542 50.000 0.00 0.00 0.00 3.36
3008 5824 2.649331 ACGGTCAACTAGATCCAACG 57.351 50.000 0.00 0.00 0.00 4.10
3009 5825 1.203994 ACGGTCAACTAGATCCAACGG 59.796 52.381 0.00 0.00 0.00 4.44
3010 5826 1.653151 GGTCAACTAGATCCAACGGC 58.347 55.000 0.00 0.00 0.00 5.68
3013 5829 3.118884 GGTCAACTAGATCCAACGGCTTA 60.119 47.826 0.00 0.00 0.00 3.09
3014 5830 4.113354 GTCAACTAGATCCAACGGCTTAG 58.887 47.826 0.00 0.00 0.00 2.18
3017 5833 3.362706 ACTAGATCCAACGGCTTAGACA 58.637 45.455 0.00 0.00 0.00 3.41
3018 5834 2.674796 AGATCCAACGGCTTAGACAC 57.325 50.000 0.00 0.00 0.00 3.67
3020 5836 1.207329 GATCCAACGGCTTAGACACCT 59.793 52.381 0.00 0.00 0.00 4.00
3021 5837 1.053424 TCCAACGGCTTAGACACCTT 58.947 50.000 0.00 0.00 0.00 3.50
3022 5838 1.001633 TCCAACGGCTTAGACACCTTC 59.998 52.381 0.00 0.00 0.00 3.46
3023 5839 1.002087 CCAACGGCTTAGACACCTTCT 59.998 52.381 0.00 0.00 38.51 2.85
3024 5840 2.550208 CCAACGGCTTAGACACCTTCTT 60.550 50.000 0.00 0.00 35.55 2.52
3026 5842 2.249139 ACGGCTTAGACACCTTCTTCT 58.751 47.619 0.00 0.00 35.55 2.85
3027 5843 3.428532 ACGGCTTAGACACCTTCTTCTA 58.571 45.455 0.00 0.00 35.55 2.10
3028 5844 3.193056 ACGGCTTAGACACCTTCTTCTAC 59.807 47.826 0.00 0.00 35.55 2.59
3029 5845 3.429135 CGGCTTAGACACCTTCTTCTACC 60.429 52.174 0.00 0.00 35.55 3.18
3031 5847 4.223255 GGCTTAGACACCTTCTTCTACCTT 59.777 45.833 0.00 0.00 35.55 3.50
3056 6385 4.466370 CCACGCCCCTAAGATAGATAATGA 59.534 45.833 0.00 0.00 0.00 2.57
3058 6387 6.464222 CACGCCCCTAAGATAGATAATGAAA 58.536 40.000 0.00 0.00 0.00 2.69
3061 6390 8.822805 ACGCCCCTAAGATAGATAATGAAATAA 58.177 33.333 0.00 0.00 0.00 1.40
3062 6391 9.667107 CGCCCCTAAGATAGATAATGAAATAAA 57.333 33.333 0.00 0.00 0.00 1.40
3103 6711 3.326578 TCACCATCCCCACACCCG 61.327 66.667 0.00 0.00 0.00 5.28
3107 6715 1.078001 CCATCCCCACACCCGTAAC 60.078 63.158 0.00 0.00 0.00 2.50
3120 6728 4.903049 ACACCCGTAACATAGATAATGGGA 59.097 41.667 5.48 0.00 40.16 4.37
3187 6795 3.649073 TCACGTGAAAATCGACTGATGT 58.351 40.909 17.62 0.00 34.24 3.06
3189 6797 5.224135 TCACGTGAAAATCGACTGATGTAA 58.776 37.500 17.62 0.00 34.24 2.41
3193 6801 7.533900 CACGTGAAAATCGACTGATGTAAATTT 59.466 33.333 10.90 0.00 34.24 1.82
3303 6911 6.537355 CATAGATAGGATGGACACAACCAAT 58.463 40.000 0.00 0.00 41.68 3.16
3378 6986 6.648879 AGTTGTATAAAACCAGCATTGTGT 57.351 33.333 1.94 0.00 0.00 3.72
3383 6991 9.674068 TTGTATAAAACCAGCATTGTGTCTATA 57.326 29.630 0.00 0.00 0.00 1.31
3386 6994 8.978874 ATAAAACCAGCATTGTGTCTATATCA 57.021 30.769 0.00 0.00 0.00 2.15
3403 7011 0.699577 TCAAAGGAAGGGGTGGACCA 60.700 55.000 0.00 0.00 42.91 4.02
3421 7029 1.202533 CCAATCCGGAGATTACGCTGT 60.203 52.381 11.34 0.00 40.89 4.40
3476 7084 2.698803 ACTTCAAGCGCATACACATCA 58.301 42.857 11.47 0.00 0.00 3.07
3630 7240 2.226437 GCGACCATAATAAGGGTGCATG 59.774 50.000 0.00 0.00 40.69 4.06
3633 7243 4.460263 GACCATAATAAGGGTGCATGTCA 58.540 43.478 0.00 0.00 40.69 3.58
3655 7265 6.258068 GTCAGGTATTAGCATGTTGAACCTAC 59.742 42.308 10.52 7.35 34.18 3.18
3674 7284 3.594603 ACCTGGTATTCTGTCAAGTCG 57.405 47.619 0.00 0.00 0.00 4.18
3676 7286 2.496070 CCTGGTATTCTGTCAAGTCGGA 59.504 50.000 0.00 0.00 0.00 4.55
3749 7359 3.056749 GGATGACTGACCAAGTAGAACGT 60.057 47.826 0.00 0.00 40.07 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.823610 GGAAGTAACAGCCCTACGTCT 59.176 52.381 0.00 0.00 31.08 4.18
1 2 1.823610 AGGAAGTAACAGCCCTACGTC 59.176 52.381 0.00 0.00 0.00 4.34
2 3 1.823610 GAGGAAGTAACAGCCCTACGT 59.176 52.381 0.00 0.00 0.00 3.57
3 4 1.136500 GGAGGAAGTAACAGCCCTACG 59.864 57.143 0.00 0.00 0.00 3.51
4 5 1.136500 CGGAGGAAGTAACAGCCCTAC 59.864 57.143 0.00 0.00 0.00 3.18
5 6 1.006281 TCGGAGGAAGTAACAGCCCTA 59.994 52.381 0.00 0.00 0.00 3.53
6 7 0.252103 TCGGAGGAAGTAACAGCCCT 60.252 55.000 0.00 0.00 0.00 5.19
7 8 0.175989 CTCGGAGGAAGTAACAGCCC 59.824 60.000 0.00 0.00 0.00 5.19
8 9 1.183549 TCTCGGAGGAAGTAACAGCC 58.816 55.000 4.96 0.00 0.00 4.85
9 10 2.417515 CCTTCTCGGAGGAAGTAACAGC 60.418 54.545 4.96 0.00 40.56 4.40
11 12 2.176889 CCCTTCTCGGAGGAAGTAACA 58.823 52.381 4.96 0.00 40.56 2.41
12 13 1.134759 GCCCTTCTCGGAGGAAGTAAC 60.135 57.143 4.96 0.00 40.56 2.50
13 14 1.192428 GCCCTTCTCGGAGGAAGTAA 58.808 55.000 4.96 0.00 40.56 2.24
15 16 1.990614 GGCCCTTCTCGGAGGAAGT 60.991 63.158 4.96 0.00 40.56 3.01
16 17 1.687493 AGGCCCTTCTCGGAGGAAG 60.687 63.158 0.00 7.54 39.25 3.46
17 18 1.990060 CAGGCCCTTCTCGGAGGAA 60.990 63.158 0.00 0.00 39.25 3.36
18 19 2.364317 CAGGCCCTTCTCGGAGGA 60.364 66.667 0.00 0.00 39.25 3.71
19 20 1.990060 TTCAGGCCCTTCTCGGAGG 60.990 63.158 0.00 0.00 36.52 4.30
20 21 1.219393 GTTCAGGCCCTTCTCGGAG 59.781 63.158 0.00 0.00 33.16 4.63
21 22 1.229209 AGTTCAGGCCCTTCTCGGA 60.229 57.895 0.00 0.00 33.16 4.55
22 23 1.219393 GAGTTCAGGCCCTTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
23 24 1.153745 CGAGTTCAGGCCCTTCTCG 60.154 63.158 17.87 17.87 41.02 4.04
24 25 1.183549 TACGAGTTCAGGCCCTTCTC 58.816 55.000 0.00 1.73 0.00 2.87
25 26 1.640917 TTACGAGTTCAGGCCCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
26 27 2.074576 GTTTACGAGTTCAGGCCCTTC 58.925 52.381 0.00 0.00 0.00 3.46
27 28 1.418637 TGTTTACGAGTTCAGGCCCTT 59.581 47.619 0.00 0.00 0.00 3.95
28 29 1.053424 TGTTTACGAGTTCAGGCCCT 58.947 50.000 0.00 0.00 0.00 5.19
29 30 2.007608 GATGTTTACGAGTTCAGGCCC 58.992 52.381 0.00 0.00 0.00 5.80
30 31 2.973945 AGATGTTTACGAGTTCAGGCC 58.026 47.619 0.00 0.00 0.00 5.19
31 32 3.424962 GCAAGATGTTTACGAGTTCAGGC 60.425 47.826 0.00 0.00 0.00 4.85
32 33 3.181530 CGCAAGATGTTTACGAGTTCAGG 60.182 47.826 0.00 0.00 43.02 3.86
33 34 3.428870 ACGCAAGATGTTTACGAGTTCAG 59.571 43.478 2.23 0.00 43.62 3.02
34 35 3.386486 ACGCAAGATGTTTACGAGTTCA 58.614 40.909 2.23 0.00 43.62 3.18
35 36 4.385244 AACGCAAGATGTTTACGAGTTC 57.615 40.909 2.23 0.00 43.62 3.01
36 37 4.746115 TGTAACGCAAGATGTTTACGAGTT 59.254 37.500 2.23 0.00 43.62 3.01
37 38 4.300803 TGTAACGCAAGATGTTTACGAGT 58.699 39.130 2.23 0.00 43.62 4.18
38 39 4.896562 TGTAACGCAAGATGTTTACGAG 57.103 40.909 2.23 0.00 43.62 4.18
39 40 4.746115 AGTTGTAACGCAAGATGTTTACGA 59.254 37.500 2.23 0.00 37.83 3.43
40 41 5.013861 AGTTGTAACGCAAGATGTTTACG 57.986 39.130 0.00 0.00 37.83 3.18
41 42 7.113704 AGTAGTTGTAACGCAAGATGTTTAC 57.886 36.000 0.00 0.00 37.83 2.01
42 43 7.438757 TGAAGTAGTTGTAACGCAAGATGTTTA 59.561 33.333 0.00 0.00 37.83 2.01
43 44 6.259167 TGAAGTAGTTGTAACGCAAGATGTTT 59.741 34.615 0.00 0.00 37.83 2.83
44 45 5.756347 TGAAGTAGTTGTAACGCAAGATGTT 59.244 36.000 0.00 0.00 37.83 2.71
45 46 5.294356 TGAAGTAGTTGTAACGCAAGATGT 58.706 37.500 0.00 0.00 37.83 3.06
46 47 5.839262 TGAAGTAGTTGTAACGCAAGATG 57.161 39.130 0.00 0.00 37.83 2.90
47 48 6.255887 GCTATGAAGTAGTTGTAACGCAAGAT 59.744 38.462 0.00 0.00 37.83 2.40
48 49 5.575606 GCTATGAAGTAGTTGTAACGCAAGA 59.424 40.000 0.00 0.00 37.83 3.02
49 50 5.577164 AGCTATGAAGTAGTTGTAACGCAAG 59.423 40.000 0.00 0.00 37.83 4.01
50 51 5.475719 AGCTATGAAGTAGTTGTAACGCAA 58.524 37.500 0.00 0.00 32.72 4.85
51 52 5.068234 AGCTATGAAGTAGTTGTAACGCA 57.932 39.130 0.00 0.00 32.72 5.24
52 53 5.686397 CCTAGCTATGAAGTAGTTGTAACGC 59.314 44.000 0.00 0.00 32.72 4.84
53 54 7.024340 TCCTAGCTATGAAGTAGTTGTAACG 57.976 40.000 0.00 0.00 32.72 3.18
54 55 8.852135 AGATCCTAGCTATGAAGTAGTTGTAAC 58.148 37.037 2.65 0.00 32.72 2.50
55 56 8.998277 AGATCCTAGCTATGAAGTAGTTGTAA 57.002 34.615 2.65 0.00 32.72 2.41
56 57 8.851145 CAAGATCCTAGCTATGAAGTAGTTGTA 58.149 37.037 2.65 0.00 32.72 2.41
57 58 7.685641 GCAAGATCCTAGCTATGAAGTAGTTGT 60.686 40.741 2.65 0.00 32.72 3.32
58 59 6.644592 GCAAGATCCTAGCTATGAAGTAGTTG 59.355 42.308 2.65 4.50 32.72 3.16
59 60 6.239458 GGCAAGATCCTAGCTATGAAGTAGTT 60.239 42.308 2.65 0.00 32.72 2.24
60 61 5.245075 GGCAAGATCCTAGCTATGAAGTAGT 59.755 44.000 2.65 0.00 32.72 2.73
61 62 5.480073 AGGCAAGATCCTAGCTATGAAGTAG 59.520 44.000 2.65 0.00 33.95 2.57
62 63 5.398236 AGGCAAGATCCTAGCTATGAAGTA 58.602 41.667 2.65 0.00 33.95 2.24
63 64 4.230455 AGGCAAGATCCTAGCTATGAAGT 58.770 43.478 2.65 0.00 33.95 3.01
64 65 4.527816 AGAGGCAAGATCCTAGCTATGAAG 59.472 45.833 2.65 0.00 36.38 3.02
65 66 4.487804 AGAGGCAAGATCCTAGCTATGAA 58.512 43.478 2.65 0.00 36.38 2.57
66 67 4.085733 GAGAGGCAAGATCCTAGCTATGA 58.914 47.826 0.89 0.89 36.38 2.15
67 68 3.195396 GGAGAGGCAAGATCCTAGCTATG 59.805 52.174 0.00 0.00 36.38 2.23
68 69 3.181413 TGGAGAGGCAAGATCCTAGCTAT 60.181 47.826 0.00 0.00 36.38 2.97
69 70 2.177888 TGGAGAGGCAAGATCCTAGCTA 59.822 50.000 0.00 0.00 36.38 3.32
70 71 1.062581 TGGAGAGGCAAGATCCTAGCT 60.063 52.381 0.00 0.00 36.38 3.32
71 72 1.418334 TGGAGAGGCAAGATCCTAGC 58.582 55.000 0.00 0.00 36.38 3.42
72 73 3.007831 GGAATGGAGAGGCAAGATCCTAG 59.992 52.174 0.00 0.00 36.38 3.02
73 74 2.975489 GGAATGGAGAGGCAAGATCCTA 59.025 50.000 0.00 0.00 36.38 2.94
74 75 1.773653 GGAATGGAGAGGCAAGATCCT 59.226 52.381 0.00 0.00 39.67 3.24
75 76 1.773653 AGGAATGGAGAGGCAAGATCC 59.226 52.381 0.00 0.00 0.00 3.36
76 77 3.244387 GGTAGGAATGGAGAGGCAAGATC 60.244 52.174 0.00 0.00 0.00 2.75
77 78 2.708325 GGTAGGAATGGAGAGGCAAGAT 59.292 50.000 0.00 0.00 0.00 2.40
78 79 2.119495 GGTAGGAATGGAGAGGCAAGA 58.881 52.381 0.00 0.00 0.00 3.02
79 80 2.103941 GAGGTAGGAATGGAGAGGCAAG 59.896 54.545 0.00 0.00 0.00 4.01
80 81 2.119495 GAGGTAGGAATGGAGAGGCAA 58.881 52.381 0.00 0.00 0.00 4.52
81 82 1.692762 GGAGGTAGGAATGGAGAGGCA 60.693 57.143 0.00 0.00 0.00 4.75
82 83 1.052617 GGAGGTAGGAATGGAGAGGC 58.947 60.000 0.00 0.00 0.00 4.70
83 84 1.221781 AGGGAGGTAGGAATGGAGAGG 59.778 57.143 0.00 0.00 0.00 3.69
84 85 2.785357 AGGGAGGTAGGAATGGAGAG 57.215 55.000 0.00 0.00 0.00 3.20
85 86 4.423960 AGAATAGGGAGGTAGGAATGGAGA 59.576 45.833 0.00 0.00 0.00 3.71
86 87 4.757692 AGAATAGGGAGGTAGGAATGGAG 58.242 47.826 0.00 0.00 0.00 3.86
87 88 4.852991 AGAATAGGGAGGTAGGAATGGA 57.147 45.455 0.00 0.00 0.00 3.41
88 89 5.482175 CAGTAGAATAGGGAGGTAGGAATGG 59.518 48.000 0.00 0.00 0.00 3.16
89 90 6.078664 ACAGTAGAATAGGGAGGTAGGAATG 58.921 44.000 0.00 0.00 0.00 2.67
90 91 6.125860 TGACAGTAGAATAGGGAGGTAGGAAT 60.126 42.308 0.00 0.00 0.00 3.01
91 92 5.195146 TGACAGTAGAATAGGGAGGTAGGAA 59.805 44.000 0.00 0.00 0.00 3.36
92 93 4.730392 TGACAGTAGAATAGGGAGGTAGGA 59.270 45.833 0.00 0.00 0.00 2.94
93 94 5.063017 TGACAGTAGAATAGGGAGGTAGG 57.937 47.826 0.00 0.00 0.00 3.18
94 95 5.766174 GTCTGACAGTAGAATAGGGAGGTAG 59.234 48.000 2.24 0.00 0.00 3.18
95 96 5.432390 AGTCTGACAGTAGAATAGGGAGGTA 59.568 44.000 10.88 0.00 0.00 3.08
96 97 4.230964 AGTCTGACAGTAGAATAGGGAGGT 59.769 45.833 10.88 0.00 0.00 3.85
97 98 4.798882 AGTCTGACAGTAGAATAGGGAGG 58.201 47.826 10.88 0.00 0.00 4.30
98 99 7.284074 TCTAAGTCTGACAGTAGAATAGGGAG 58.716 42.308 10.88 0.00 0.00 4.30
99 100 7.209340 TCTAAGTCTGACAGTAGAATAGGGA 57.791 40.000 10.88 0.00 0.00 4.20
100 101 7.201839 GGTTCTAAGTCTGACAGTAGAATAGGG 60.202 44.444 24.52 3.03 35.60 3.53
101 102 7.339721 TGGTTCTAAGTCTGACAGTAGAATAGG 59.660 40.741 24.52 3.54 35.60 2.57
102 103 8.185505 GTGGTTCTAAGTCTGACAGTAGAATAG 58.814 40.741 24.52 11.16 35.60 1.73
103 104 7.148289 CGTGGTTCTAAGTCTGACAGTAGAATA 60.148 40.741 24.52 18.00 35.60 1.75
104 105 6.349445 CGTGGTTCTAAGTCTGACAGTAGAAT 60.349 42.308 24.52 0.00 35.60 2.40
105 106 5.048921 CGTGGTTCTAAGTCTGACAGTAGAA 60.049 44.000 20.87 20.87 31.72 2.10
106 107 4.454847 CGTGGTTCTAAGTCTGACAGTAGA 59.545 45.833 10.88 12.74 0.00 2.59
107 108 4.454847 TCGTGGTTCTAAGTCTGACAGTAG 59.545 45.833 10.88 10.72 0.00 2.57
108 109 4.214971 GTCGTGGTTCTAAGTCTGACAGTA 59.785 45.833 10.88 1.08 0.00 2.74
109 110 3.004524 GTCGTGGTTCTAAGTCTGACAGT 59.995 47.826 10.88 0.00 0.00 3.55
110 111 3.004419 TGTCGTGGTTCTAAGTCTGACAG 59.996 47.826 10.88 0.00 31.99 3.51
111 112 2.953648 TGTCGTGGTTCTAAGTCTGACA 59.046 45.455 10.88 0.00 33.14 3.58
112 113 3.306818 GTGTCGTGGTTCTAAGTCTGAC 58.693 50.000 0.00 0.00 0.00 3.51
113 114 2.295349 GGTGTCGTGGTTCTAAGTCTGA 59.705 50.000 0.00 0.00 0.00 3.27
114 115 2.296471 AGGTGTCGTGGTTCTAAGTCTG 59.704 50.000 0.00 0.00 0.00 3.51
115 116 2.595238 AGGTGTCGTGGTTCTAAGTCT 58.405 47.619 0.00 0.00 0.00 3.24
116 117 3.505293 AGTAGGTGTCGTGGTTCTAAGTC 59.495 47.826 0.00 0.00 0.00 3.01
117 118 3.494332 AGTAGGTGTCGTGGTTCTAAGT 58.506 45.455 0.00 0.00 0.00 2.24
118 119 4.436584 CGTAGTAGGTGTCGTGGTTCTAAG 60.437 50.000 0.00 0.00 0.00 2.18
119 120 3.436704 CGTAGTAGGTGTCGTGGTTCTAA 59.563 47.826 0.00 0.00 0.00 2.10
120 121 3.002791 CGTAGTAGGTGTCGTGGTTCTA 58.997 50.000 0.00 0.00 0.00 2.10
121 122 1.808945 CGTAGTAGGTGTCGTGGTTCT 59.191 52.381 0.00 0.00 0.00 3.01
122 123 1.730446 GCGTAGTAGGTGTCGTGGTTC 60.730 57.143 0.00 0.00 0.00 3.62
123 124 0.242017 GCGTAGTAGGTGTCGTGGTT 59.758 55.000 0.00 0.00 0.00 3.67
124 125 1.589716 GGCGTAGTAGGTGTCGTGGT 61.590 60.000 0.00 0.00 0.00 4.16
125 126 1.138247 GGCGTAGTAGGTGTCGTGG 59.862 63.158 0.00 0.00 0.00 4.94
126 127 1.138247 GGGCGTAGTAGGTGTCGTG 59.862 63.158 0.00 0.00 0.00 4.35
127 128 2.048603 GGGGCGTAGTAGGTGTCGT 61.049 63.158 0.00 0.00 0.00 4.34
128 129 2.779033 GGGGGCGTAGTAGGTGTCG 61.779 68.421 0.00 0.00 0.00 4.35
129 130 1.683365 TGGGGGCGTAGTAGGTGTC 60.683 63.158 0.00 0.00 0.00 3.67
130 131 1.986210 GTGGGGGCGTAGTAGGTGT 60.986 63.158 0.00 0.00 0.00 4.16
131 132 2.728435 GGTGGGGGCGTAGTAGGTG 61.728 68.421 0.00 0.00 0.00 4.00
132 133 2.364710 GGTGGGGGCGTAGTAGGT 60.365 66.667 0.00 0.00 0.00 3.08
133 134 3.159347 GGGTGGGGGCGTAGTAGG 61.159 72.222 0.00 0.00 0.00 3.18
134 135 2.909457 TACGGGTGGGGGCGTAGTAG 62.909 65.000 0.00 0.00 0.00 2.57
135 136 2.506884 TTACGGGTGGGGGCGTAGTA 62.507 60.000 0.00 0.00 0.00 1.82
136 137 3.903281 TTACGGGTGGGGGCGTAGT 62.903 63.158 0.00 0.00 0.00 2.73
137 138 3.076278 TTACGGGTGGGGGCGTAG 61.076 66.667 0.00 0.00 0.00 3.51
138 139 3.389662 GTTACGGGTGGGGGCGTA 61.390 66.667 0.00 0.00 0.00 4.42
142 143 1.616025 TTAGGGTTACGGGTGGGGG 60.616 63.158 0.00 0.00 0.00 5.40
143 144 0.618393 TCTTAGGGTTACGGGTGGGG 60.618 60.000 0.00 0.00 0.00 4.96
144 145 1.503800 ATCTTAGGGTTACGGGTGGG 58.496 55.000 0.00 0.00 0.00 4.61
145 146 3.569491 TCTATCTTAGGGTTACGGGTGG 58.431 50.000 0.00 0.00 0.00 4.61
146 147 6.906157 TTATCTATCTTAGGGTTACGGGTG 57.094 41.667 0.00 0.00 0.00 4.61
147 148 6.439692 CCATTATCTATCTTAGGGTTACGGGT 59.560 42.308 0.00 0.00 0.00 5.28
148 149 6.127140 CCCATTATCTATCTTAGGGTTACGGG 60.127 46.154 0.00 0.00 0.00 5.28
149 150 6.439692 ACCCATTATCTATCTTAGGGTTACGG 59.560 42.308 0.00 0.00 45.35 4.02
150 151 7.477945 ACCCATTATCTATCTTAGGGTTACG 57.522 40.000 0.00 0.00 45.35 3.18
151 152 8.476447 GCTACCCATTATCTATCTTAGGGTTAC 58.524 40.741 5.47 0.00 45.35 2.50
152 153 7.622479 GGCTACCCATTATCTATCTTAGGGTTA 59.378 40.741 5.47 0.00 45.35 2.85
153 154 6.444171 GGCTACCCATTATCTATCTTAGGGTT 59.556 42.308 5.47 0.00 45.35 4.11
155 156 5.367060 GGGCTACCCATTATCTATCTTAGGG 59.633 48.000 0.00 0.00 44.65 3.53
156 157 6.487299 GGGCTACCCATTATCTATCTTAGG 57.513 45.833 0.00 0.00 44.65 2.69
171 172 3.541713 CTCGCTGGAGGGCTACCC 61.542 72.222 0.00 0.00 45.90 3.69
172 173 4.228567 GCTCGCTGGAGGGCTACC 62.229 72.222 0.00 0.00 40.80 3.18
173 174 4.228567 GGCTCGCTGGAGGGCTAC 62.229 72.222 0.00 0.00 40.80 3.58
178 179 3.689002 GAAAGGGGCTCGCTGGAGG 62.689 68.421 0.00 0.00 40.80 4.30
179 180 2.124942 GAAAGGGGCTCGCTGGAG 60.125 66.667 0.00 0.00 43.46 3.86
180 181 2.185310 GAAGAAAGGGGCTCGCTGGA 62.185 60.000 0.00 0.00 0.00 3.86
181 182 1.746991 GAAGAAAGGGGCTCGCTGG 60.747 63.158 0.00 0.00 0.00 4.85
182 183 0.322008 AAGAAGAAAGGGGCTCGCTG 60.322 55.000 0.00 0.00 0.00 5.18
183 184 0.035915 GAAGAAGAAAGGGGCTCGCT 60.036 55.000 0.00 0.00 0.00 4.93
184 185 0.035915 AGAAGAAGAAAGGGGCTCGC 60.036 55.000 0.00 0.00 0.00 5.03
185 186 2.481289 AAGAAGAAGAAAGGGGCTCG 57.519 50.000 0.00 0.00 0.00 5.03
186 187 3.491342 ACAAAGAAGAAGAAAGGGGCTC 58.509 45.455 0.00 0.00 0.00 4.70
187 188 3.602205 ACAAAGAAGAAGAAAGGGGCT 57.398 42.857 0.00 0.00 0.00 5.19
188 189 3.005897 GGAACAAAGAAGAAGAAAGGGGC 59.994 47.826 0.00 0.00 0.00 5.80
189 190 3.574396 GGGAACAAAGAAGAAGAAAGGGG 59.426 47.826 0.00 0.00 0.00 4.79
190 191 4.474394 AGGGAACAAAGAAGAAGAAAGGG 58.526 43.478 0.00 0.00 0.00 3.95
191 192 4.520874 GGAGGGAACAAAGAAGAAGAAAGG 59.479 45.833 0.00 0.00 0.00 3.11
192 193 4.214332 CGGAGGGAACAAAGAAGAAGAAAG 59.786 45.833 0.00 0.00 0.00 2.62
193 194 4.134563 CGGAGGGAACAAAGAAGAAGAAA 58.865 43.478 0.00 0.00 0.00 2.52
194 195 3.740115 CGGAGGGAACAAAGAAGAAGAA 58.260 45.455 0.00 0.00 0.00 2.52
195 196 3.402628 CGGAGGGAACAAAGAAGAAGA 57.597 47.619 0.00 0.00 0.00 2.87
211 212 1.508632 TTTTTGAGAGTTCGCCGGAG 58.491 50.000 5.05 0.00 0.00 4.63
212 213 2.073816 GATTTTTGAGAGTTCGCCGGA 58.926 47.619 5.05 0.00 0.00 5.14
213 214 1.804151 TGATTTTTGAGAGTTCGCCGG 59.196 47.619 0.00 0.00 0.00 6.13
214 215 3.058914 AGTTGATTTTTGAGAGTTCGCCG 60.059 43.478 0.00 0.00 0.00 6.46
215 216 4.024048 TCAGTTGATTTTTGAGAGTTCGCC 60.024 41.667 0.00 0.00 0.00 5.54
216 217 4.906437 GTCAGTTGATTTTTGAGAGTTCGC 59.094 41.667 0.00 0.00 0.00 4.70
217 218 5.444122 GGTCAGTTGATTTTTGAGAGTTCG 58.556 41.667 0.00 0.00 0.00 3.95
218 219 5.278512 GGGGTCAGTTGATTTTTGAGAGTTC 60.279 44.000 0.00 0.00 0.00 3.01
247 248 6.521133 GCTAAATGACAGTCGACTGAATTTTG 59.479 38.462 38.01 36.00 46.59 2.44
248 249 6.428159 AGCTAAATGACAGTCGACTGAATTTT 59.572 34.615 38.01 33.48 46.59 1.82
277 278 7.642082 ACACGAGGTTAGTCTATTTAGTCAT 57.358 36.000 0.00 0.00 0.00 3.06
401 405 7.920682 GGTCTTTTCTTCTCAGCAACAAAATTA 59.079 33.333 0.00 0.00 0.00 1.40
505 511 6.265876 GGAGTACTATTTAGGAACAGAGGGAG 59.734 46.154 0.00 0.00 0.00 4.30
506 512 6.134754 GGAGTACTATTTAGGAACAGAGGGA 58.865 44.000 0.00 0.00 0.00 4.20
507 513 5.304871 GGGAGTACTATTTAGGAACAGAGGG 59.695 48.000 0.00 0.00 0.00 4.30
508 514 6.137559 AGGGAGTACTATTTAGGAACAGAGG 58.862 44.000 0.00 0.00 0.00 3.69
509 515 6.265876 GGAGGGAGTACTATTTAGGAACAGAG 59.734 46.154 0.00 0.00 0.00 3.35
510 516 6.134754 GGAGGGAGTACTATTTAGGAACAGA 58.865 44.000 0.00 0.00 0.00 3.41
511 517 5.009811 CGGAGGGAGTACTATTTAGGAACAG 59.990 48.000 0.00 0.00 0.00 3.16
512 518 4.891756 CGGAGGGAGTACTATTTAGGAACA 59.108 45.833 0.00 0.00 0.00 3.18
513 519 4.892345 ACGGAGGGAGTACTATTTAGGAAC 59.108 45.833 0.00 0.00 0.00 3.62
514 520 5.134725 ACGGAGGGAGTACTATTTAGGAA 57.865 43.478 0.00 0.00 0.00 3.36
515 521 4.446889 GGACGGAGGGAGTACTATTTAGGA 60.447 50.000 0.00 0.00 0.00 2.94
516 522 3.825585 GGACGGAGGGAGTACTATTTAGG 59.174 52.174 0.00 0.00 0.00 2.69
517 523 3.501445 CGGACGGAGGGAGTACTATTTAG 59.499 52.174 0.00 0.00 0.00 1.85
518 524 3.480470 CGGACGGAGGGAGTACTATTTA 58.520 50.000 0.00 0.00 0.00 1.40
519 525 2.305009 CGGACGGAGGGAGTACTATTT 58.695 52.381 0.00 0.00 0.00 1.40
520 526 1.478288 CCGGACGGAGGGAGTACTATT 60.478 57.143 4.40 0.00 37.50 1.73
521 527 0.110104 CCGGACGGAGGGAGTACTAT 59.890 60.000 4.40 0.00 37.50 2.12
522 528 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
523 529 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
524 530 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
525 531 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
526 532 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
527 533 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
528 534 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
529 535 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
530 536 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
531 537 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
532 538 2.564062 AGAACAAGTATTTCCGGACGGA 59.436 45.455 1.83 9.76 43.52 4.69
533 539 2.928116 GAGAACAAGTATTTCCGGACGG 59.072 50.000 1.83 3.96 0.00 4.79
534 540 3.581755 TGAGAACAAGTATTTCCGGACG 58.418 45.455 1.83 0.00 0.00 4.79
535 541 5.934935 TTTGAGAACAAGTATTTCCGGAC 57.065 39.130 1.83 0.00 37.32 4.79
536 542 6.072175 CCATTTTGAGAACAAGTATTTCCGGA 60.072 38.462 0.00 0.00 37.32 5.14
537 543 6.072175 TCCATTTTGAGAACAAGTATTTCCGG 60.072 38.462 0.00 0.00 37.32 5.14
538 544 6.908825 TCCATTTTGAGAACAAGTATTTCCG 58.091 36.000 0.00 0.00 37.32 4.30
601 607 9.542462 CGGAAATACTTGTCCTAGAAATGATTA 57.458 33.333 0.00 0.00 0.00 1.75
602 608 7.499232 CCGGAAATACTTGTCCTAGAAATGATT 59.501 37.037 0.00 0.00 0.00 2.57
603 609 6.992715 CCGGAAATACTTGTCCTAGAAATGAT 59.007 38.462 0.00 0.00 0.00 2.45
604 610 6.155565 TCCGGAAATACTTGTCCTAGAAATGA 59.844 38.462 0.00 0.00 0.00 2.57
605 611 6.258068 GTCCGGAAATACTTGTCCTAGAAATG 59.742 42.308 5.23 0.00 0.00 2.32
606 612 6.346896 GTCCGGAAATACTTGTCCTAGAAAT 58.653 40.000 5.23 0.00 0.00 2.17
607 613 5.622914 CGTCCGGAAATACTTGTCCTAGAAA 60.623 44.000 5.23 0.00 0.00 2.52
608 614 4.142315 CGTCCGGAAATACTTGTCCTAGAA 60.142 45.833 5.23 0.00 0.00 2.10
609 615 3.379372 CGTCCGGAAATACTTGTCCTAGA 59.621 47.826 5.23 0.00 0.00 2.43
610 616 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
611 617 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
612 618 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
613 619 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
614 620 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
615 621 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
616 622 1.479323 TCCTCCGTCCGGAAATACTTG 59.521 52.381 5.23 0.00 44.66 3.16
617 623 1.856629 TCCTCCGTCCGGAAATACTT 58.143 50.000 5.23 0.00 44.66 2.24
618 624 1.755380 CTTCCTCCGTCCGGAAATACT 59.245 52.381 5.23 0.00 44.66 2.12
619 625 1.479730 ACTTCCTCCGTCCGGAAATAC 59.520 52.381 5.23 0.00 44.66 1.89
620 626 1.856629 ACTTCCTCCGTCCGGAAATA 58.143 50.000 5.23 0.00 44.66 1.40
621 627 1.856629 TACTTCCTCCGTCCGGAAAT 58.143 50.000 5.23 0.00 44.66 2.17
622 628 1.856629 ATACTTCCTCCGTCCGGAAA 58.143 50.000 5.23 1.47 44.66 3.13
623 629 2.734755 TATACTTCCTCCGTCCGGAA 57.265 50.000 5.23 0.00 44.66 4.30
624 630 2.158564 ACATATACTTCCTCCGTCCGGA 60.159 50.000 0.00 0.00 42.90 5.14
625 631 2.228343 GACATATACTTCCTCCGTCCGG 59.772 54.545 0.00 0.00 0.00 5.14
626 632 3.147629 AGACATATACTTCCTCCGTCCG 58.852 50.000 0.00 0.00 0.00 4.79
627 633 5.509332 GGAAAGACATATACTTCCTCCGTCC 60.509 48.000 0.00 0.00 0.00 4.79
628 634 5.068723 TGGAAAGACATATACTTCCTCCGTC 59.931 44.000 0.00 0.00 30.99 4.79
629 635 4.960469 TGGAAAGACATATACTTCCTCCGT 59.040 41.667 0.00 0.00 30.99 4.69
630 636 5.302059 TCTGGAAAGACATATACTTCCTCCG 59.698 44.000 0.00 0.00 30.99 4.63
631 637 6.732896 TCTGGAAAGACATATACTTCCTCC 57.267 41.667 0.00 0.00 0.00 4.30
632 638 9.620259 AATTTCTGGAAAGACATATACTTCCTC 57.380 33.333 2.29 0.00 33.32 3.71
633 639 9.981460 AAATTTCTGGAAAGACATATACTTCCT 57.019 29.630 2.29 0.00 33.32 3.36
640 646 9.880157 CCAATTGAAATTTCTGGAAAGACATAT 57.120 29.630 18.64 0.00 33.32 1.78
641 647 9.087871 TCCAATTGAAATTTCTGGAAAGACATA 57.912 29.630 19.91 1.53 33.32 2.29
642 648 7.874528 GTCCAATTGAAATTTCTGGAAAGACAT 59.125 33.333 22.48 1.00 33.32 3.06
643 649 7.069826 AGTCCAATTGAAATTTCTGGAAAGACA 59.930 33.333 22.48 4.23 33.32 3.41
644 650 7.436933 AGTCCAATTGAAATTTCTGGAAAGAC 58.563 34.615 22.48 18.16 33.32 3.01
645 651 7.601705 AGTCCAATTGAAATTTCTGGAAAGA 57.398 32.000 22.48 9.99 33.32 2.52
646 652 8.359642 TGTAGTCCAATTGAAATTTCTGGAAAG 58.640 33.333 22.48 8.22 33.32 2.62
647 653 8.243961 TGTAGTCCAATTGAAATTTCTGGAAA 57.756 30.769 22.48 14.32 34.46 3.13
648 654 7.831691 TGTAGTCCAATTGAAATTTCTGGAA 57.168 32.000 22.48 10.65 0.00 3.53
649 655 7.286546 TGTTGTAGTCCAATTGAAATTTCTGGA 59.713 33.333 18.82 18.82 35.02 3.86
650 656 7.432869 TGTTGTAGTCCAATTGAAATTTCTGG 58.567 34.615 18.64 16.93 35.02 3.86
658 664 9.056005 GCATCTATATGTTGTAGTCCAATTGAA 57.944 33.333 7.12 0.00 35.02 2.69
659 665 8.210265 TGCATCTATATGTTGTAGTCCAATTGA 58.790 33.333 7.12 0.00 35.02 2.57
660 666 8.382030 TGCATCTATATGTTGTAGTCCAATTG 57.618 34.615 0.00 0.00 35.02 2.32
661 667 9.006839 CATGCATCTATATGTTGTAGTCCAATT 57.993 33.333 0.00 0.00 35.02 2.32
662 668 8.159447 ACATGCATCTATATGTTGTAGTCCAAT 58.841 33.333 0.00 0.00 34.00 3.16
663 669 7.508687 ACATGCATCTATATGTTGTAGTCCAA 58.491 34.615 0.00 0.00 34.00 3.53
664 670 7.066307 ACATGCATCTATATGTTGTAGTCCA 57.934 36.000 0.00 0.00 34.00 4.02
665 671 8.523658 TCTACATGCATCTATATGTTGTAGTCC 58.476 37.037 20.21 0.00 43.47 3.85
666 672 9.347934 GTCTACATGCATCTATATGTTGTAGTC 57.652 37.037 20.21 15.64 43.47 2.59
667 673 8.860088 TGTCTACATGCATCTATATGTTGTAGT 58.140 33.333 20.21 1.66 43.47 2.73
668 674 9.866798 ATGTCTACATGCATCTATATGTTGTAG 57.133 33.333 17.65 17.65 43.84 2.74
697 703 9.677567 GCAAAATGAGTGAATCTACAGTTTAAA 57.322 29.630 0.00 0.00 31.30 1.52
698 704 9.066892 AGCAAAATGAGTGAATCTACAGTTTAA 57.933 29.630 0.00 0.00 31.30 1.52
699 705 8.621532 AGCAAAATGAGTGAATCTACAGTTTA 57.378 30.769 0.00 0.00 31.30 2.01
700 706 7.516198 AGCAAAATGAGTGAATCTACAGTTT 57.484 32.000 0.00 0.00 32.32 2.66
701 707 7.516198 AAGCAAAATGAGTGAATCTACAGTT 57.484 32.000 0.00 0.00 0.00 3.16
702 708 6.128445 CGAAGCAAAATGAGTGAATCTACAGT 60.128 38.462 0.00 0.00 0.00 3.55
703 709 6.128445 ACGAAGCAAAATGAGTGAATCTACAG 60.128 38.462 0.00 0.00 0.00 2.74
704 710 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
705 711 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
706 712 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
707 713 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
708 714 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
709 715 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
710 716 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
711 717 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
712 718 6.311445 AGACTACATACGAAGCAAAATGAGTG 59.689 38.462 0.00 0.00 0.00 3.51
713 719 6.398918 AGACTACATACGAAGCAAAATGAGT 58.601 36.000 0.00 0.00 0.00 3.41
714 720 6.754209 AGAGACTACATACGAAGCAAAATGAG 59.246 38.462 0.00 0.00 0.00 2.90
715 721 6.631016 AGAGACTACATACGAAGCAAAATGA 58.369 36.000 0.00 0.00 0.00 2.57
716 722 6.893958 AGAGACTACATACGAAGCAAAATG 57.106 37.500 0.00 0.00 0.00 2.32
717 723 6.874134 ACAAGAGACTACATACGAAGCAAAAT 59.126 34.615 0.00 0.00 0.00 1.82
718 724 6.220930 ACAAGAGACTACATACGAAGCAAAA 58.779 36.000 0.00 0.00 0.00 2.44
719 725 5.779922 ACAAGAGACTACATACGAAGCAAA 58.220 37.500 0.00 0.00 0.00 3.68
720 726 5.386958 ACAAGAGACTACATACGAAGCAA 57.613 39.130 0.00 0.00 0.00 3.91
721 727 5.048294 TCAACAAGAGACTACATACGAAGCA 60.048 40.000 0.00 0.00 0.00 3.91
722 728 5.399858 TCAACAAGAGACTACATACGAAGC 58.600 41.667 0.00 0.00 0.00 3.86
723 729 7.869016 TTTCAACAAGAGACTACATACGAAG 57.131 36.000 0.00 0.00 0.00 3.79
724 730 8.827177 AATTTCAACAAGAGACTACATACGAA 57.173 30.769 0.00 0.00 0.00 3.85
725 731 8.827177 AAATTTCAACAAGAGACTACATACGA 57.173 30.769 0.00 0.00 0.00 3.43
726 732 9.878599 AAAAATTTCAACAAGAGACTACATACG 57.121 29.630 0.00 0.00 0.00 3.06
756 762 9.292195 TCCCTTCGTTCTCAAATATAAGTTTTT 57.708 29.630 0.00 0.00 0.00 1.94
757 763 8.857694 TCCCTTCGTTCTCAAATATAAGTTTT 57.142 30.769 0.00 0.00 0.00 2.43
758 764 8.101419 ACTCCCTTCGTTCTCAAATATAAGTTT 58.899 33.333 0.00 0.00 0.00 2.66
759 765 7.621796 ACTCCCTTCGTTCTCAAATATAAGTT 58.378 34.615 0.00 0.00 0.00 2.66
760 766 7.184067 ACTCCCTTCGTTCTCAAATATAAGT 57.816 36.000 0.00 0.00 0.00 2.24
765 771 9.947433 TTTTTATACTCCCTTCGTTCTCAAATA 57.053 29.630 0.00 0.00 0.00 1.40
766 772 8.857694 TTTTTATACTCCCTTCGTTCTCAAAT 57.142 30.769 0.00 0.00 0.00 2.32
793 799 1.486310 TGTCATAAATCTGCCGCTCCT 59.514 47.619 0.00 0.00 0.00 3.69
822 828 0.245266 TTCGATAGCGTCTGTTGGCA 59.755 50.000 0.00 0.00 38.98 4.92
1117 1123 0.041576 GTCCGGTTCGAAGCAACAAC 60.042 55.000 25.46 13.66 0.00 3.32
1132 1138 2.735857 GTTCGACCCCGTTGTCCG 60.736 66.667 0.00 0.00 37.05 4.79
1171 1178 7.342769 TGCAGAGAGTAATTAAGGTTATCGA 57.657 36.000 0.00 0.00 0.00 3.59
1316 1344 1.136984 CGTGGGAGAGTACAGCGTC 59.863 63.158 0.00 0.00 0.00 5.19
1472 1500 1.658409 CGACGCGAGCTGCATGATA 60.658 57.895 15.93 0.00 46.97 2.15
1667 1695 1.516603 GGTCAGGTACGCGAGCTTC 60.517 63.158 15.93 7.07 31.94 3.86
1701 1729 3.564218 GCCCTCCATGGCCTCGAT 61.564 66.667 6.96 0.00 46.11 3.59
1820 1848 2.247437 GGCGGTGATGCGGAGATTC 61.247 63.158 0.00 0.00 35.06 2.52
2937 5753 1.800681 CGAATCGGAGGCCCAAAAC 59.199 57.895 0.00 0.00 0.00 2.43
2979 5795 2.879103 AGTTGACCGTTGATGGGAAT 57.121 45.000 0.00 0.00 0.00 3.01
3003 5819 1.002087 AGAAGGTGTCTAAGCCGTTGG 59.998 52.381 0.00 0.00 33.56 3.77
3004 5820 2.457366 AGAAGGTGTCTAAGCCGTTG 57.543 50.000 0.00 0.00 33.56 4.10
3008 5824 3.770388 AGGTAGAAGAAGGTGTCTAAGCC 59.230 47.826 0.00 0.00 34.56 4.35
3009 5825 5.408880 AAGGTAGAAGAAGGTGTCTAAGC 57.591 43.478 0.00 0.00 34.56 3.09
3010 5826 5.105269 GGGAAGGTAGAAGAAGGTGTCTAAG 60.105 48.000 0.00 0.00 34.56 2.18
3013 5829 3.174779 GGGAAGGTAGAAGAAGGTGTCT 58.825 50.000 0.00 0.00 38.69 3.41
3014 5830 2.904434 TGGGAAGGTAGAAGAAGGTGTC 59.096 50.000 0.00 0.00 0.00 3.67
3017 5833 1.900486 CGTGGGAAGGTAGAAGAAGGT 59.100 52.381 0.00 0.00 0.00 3.50
3018 5834 1.405661 GCGTGGGAAGGTAGAAGAAGG 60.406 57.143 0.00 0.00 0.00 3.46
3020 5836 0.611714 GGCGTGGGAAGGTAGAAGAA 59.388 55.000 0.00 0.00 0.00 2.52
3021 5837 1.262640 GGGCGTGGGAAGGTAGAAGA 61.263 60.000 0.00 0.00 0.00 2.87
3022 5838 1.221021 GGGCGTGGGAAGGTAGAAG 59.779 63.158 0.00 0.00 0.00 2.85
3023 5839 2.295602 GGGGCGTGGGAAGGTAGAA 61.296 63.158 0.00 0.00 0.00 2.10
3024 5840 1.877672 TAGGGGCGTGGGAAGGTAGA 61.878 60.000 0.00 0.00 0.00 2.59
3026 5842 0.979187 CTTAGGGGCGTGGGAAGGTA 60.979 60.000 0.00 0.00 0.00 3.08
3027 5843 2.204029 TTAGGGGCGTGGGAAGGT 60.204 61.111 0.00 0.00 0.00 3.50
3028 5844 1.345715 ATCTTAGGGGCGTGGGAAGG 61.346 60.000 0.00 0.00 0.00 3.46
3029 5845 1.344763 CTATCTTAGGGGCGTGGGAAG 59.655 57.143 0.00 0.00 0.00 3.46
3031 5847 0.559205 TCTATCTTAGGGGCGTGGGA 59.441 55.000 0.00 0.00 0.00 4.37
3056 6385 7.634817 CGCGAGAGAAACATCGTTTATTTATTT 59.365 33.333 0.00 0.00 40.97 1.40
3058 6387 6.474427 TCGCGAGAGAAACATCGTTTATTTAT 59.526 34.615 3.71 0.00 40.97 1.40
3061 6390 4.171005 TCGCGAGAGAAACATCGTTTATT 58.829 39.130 3.71 0.00 40.97 1.40
3062 6391 3.766151 TCGCGAGAGAAACATCGTTTAT 58.234 40.909 3.71 0.00 40.97 1.40
3063 6392 3.206034 TCGCGAGAGAAACATCGTTTA 57.794 42.857 3.71 0.00 40.97 2.01
3064 6393 2.060326 TCGCGAGAGAAACATCGTTT 57.940 45.000 3.71 0.00 40.97 3.60
3065 6394 3.786809 TCGCGAGAGAAACATCGTT 57.213 47.368 3.71 0.00 40.97 3.85
3078 6407 3.838271 GGGATGGTGAGCTCGCGA 61.838 66.667 20.49 17.65 0.00 5.87
3079 6408 4.899239 GGGGATGGTGAGCTCGCG 62.899 72.222 20.49 0.00 0.00 5.87
3107 6715 7.268586 CGGAGAAGGTTATCCCATTATCTATG 58.731 42.308 0.00 0.00 35.14 2.23
3120 6728 1.043673 AGCTCGCCGGAGAAGGTTAT 61.044 55.000 9.83 0.00 43.27 1.89
3187 6795 9.906660 ATGTAAGTCGCTTGAATTTGAAATTTA 57.093 25.926 4.46 0.00 31.44 1.40
3193 6801 7.985184 AGGTATATGTAAGTCGCTTGAATTTGA 59.015 33.333 2.86 0.00 31.44 2.69
3250 6858 4.262463 GCCGGTGTGATTCATATCCTCTAA 60.262 45.833 1.90 0.00 0.00 2.10
3251 6859 3.258372 GCCGGTGTGATTCATATCCTCTA 59.742 47.826 1.90 0.00 0.00 2.43
3260 6868 1.026182 GCAGATGCCGGTGTGATTCA 61.026 55.000 1.90 0.00 34.31 2.57
3303 6911 4.464597 ACCTTTTTGTTGGACTGCTTGTTA 59.535 37.500 0.00 0.00 0.00 2.41
3358 6966 9.845740 ATATAGACACAATGCTGGTTTTATACA 57.154 29.630 0.00 0.00 0.00 2.29
3370 6978 6.016777 CCCTTCCTTTGATATAGACACAATGC 60.017 42.308 0.00 0.00 0.00 3.56
3374 6982 5.036916 ACCCCTTCCTTTGATATAGACACA 58.963 41.667 0.00 0.00 0.00 3.72
3378 6986 4.658901 GTCCACCCCTTCCTTTGATATAGA 59.341 45.833 0.00 0.00 0.00 1.98
3383 6991 0.704664 GGTCCACCCCTTCCTTTGAT 59.295 55.000 0.00 0.00 0.00 2.57
3386 6994 1.077169 GATTGGTCCACCCCTTCCTTT 59.923 52.381 0.00 0.00 34.29 3.11
3403 7011 1.754803 TGACAGCGTAATCTCCGGATT 59.245 47.619 3.57 0.00 43.67 3.01
3408 7016 0.535335 TGGGTGACAGCGTAATCTCC 59.465 55.000 0.00 0.00 0.00 3.71
3451 7059 4.811908 TGTGTATGCGCTTGAAGTAAGTA 58.188 39.130 9.73 0.00 38.70 2.24
3455 7063 3.616821 GTGATGTGTATGCGCTTGAAGTA 59.383 43.478 9.73 0.00 0.00 2.24
3456 7064 2.416547 GTGATGTGTATGCGCTTGAAGT 59.583 45.455 9.73 0.00 0.00 3.01
3476 7084 2.370849 AGTATCAACCGGTGTTCAAGGT 59.629 45.455 8.52 0.00 40.50 3.50
3630 7240 5.186198 AGGTTCAACATGCTAATACCTGAC 58.814 41.667 6.39 0.00 33.50 3.51
3633 7243 5.428783 AGGTAGGTTCAACATGCTAATACCT 59.571 40.000 10.68 10.68 36.52 3.08
3655 7265 2.496070 TCCGACTTGACAGAATACCAGG 59.504 50.000 0.00 0.00 0.00 4.45
3665 7275 4.819105 ATTTATGGTCTCCGACTTGACA 57.181 40.909 0.00 0.00 35.11 3.58
3692 7302 7.036220 CCAATTTGTAACAACCACAAGTGTAA 58.964 34.615 0.00 0.00 37.22 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.