Multiple sequence alignment - TraesCS5B01G132600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G132600 chr5B 100.000 7172 0 0 1 7172 247250434 247257605 0.000000e+00 13245.0
1 TraesCS5B01G132600 chr5B 100.000 230 0 0 7456 7685 247257889 247258118 7.130000e-115 425.0
2 TraesCS5B01G132600 chr5B 98.913 184 0 1 3603 3784 247253848 247254031 2.070000e-85 327.0
3 TraesCS5B01G132600 chr5B 98.913 184 0 1 3415 3598 247254036 247254217 2.070000e-85 327.0
4 TraesCS5B01G132600 chr5B 92.784 97 7 0 5691 5787 589999924 589999828 2.890000e-29 141.0
5 TraesCS5B01G132600 chr5D 96.472 3600 92 13 3601 7172 223959257 223955665 0.000000e+00 5912.0
6 TraesCS5B01G132600 chr5D 95.306 3643 114 20 1 3598 223962703 223959073 0.000000e+00 5727.0
7 TraesCS5B01G132600 chr5D 85.255 529 58 12 1 523 17781977 17781463 1.900000e-145 527.0
8 TraesCS5B01G132600 chr5D 87.826 230 16 6 7456 7685 223955550 223955333 7.650000e-65 259.0
9 TraesCS5B01G132600 chr5D 85.356 239 23 6 2123 2354 277243071 277243304 3.580000e-58 237.0
10 TraesCS5B01G132600 chr5A 96.223 3601 90 14 3601 7172 298806754 298803171 0.000000e+00 5854.0
11 TraesCS5B01G132600 chr5A 94.433 2479 95 18 885 3338 298809374 298806914 0.000000e+00 3773.0
12 TraesCS5B01G132600 chr5A 96.935 261 8 0 3338 3598 298806829 298806569 9.160000e-119 438.0
13 TraesCS5B01G132600 chr5A 92.045 88 5 1 5691 5778 338289533 338289618 1.050000e-23 122.0
14 TraesCS5B01G132600 chr3D 91.963 535 35 4 1 528 53620815 53620282 0.000000e+00 743.0
15 TraesCS5B01G132600 chr3D 89.691 97 10 0 5691 5787 609983808 609983904 2.910000e-24 124.0
16 TraesCS5B01G132600 chr3D 87.736 106 11 2 5686 5790 601221856 601221752 1.050000e-23 122.0
17 TraesCS5B01G132600 chr3D 94.000 50 3 0 7485 7534 325400907 325400858 8.270000e-10 76.8
18 TraesCS5B01G132600 chr4D 90.720 528 45 4 3 528 370067604 370068129 0.000000e+00 701.0
19 TraesCS5B01G132600 chr4D 92.330 339 24 2 526 862 434068251 434068589 1.500000e-131 481.0
20 TraesCS5B01G132600 chr4D 92.593 189 11 2 2165 2353 91054190 91054375 1.270000e-67 268.0
21 TraesCS5B01G132600 chr4D 89.048 210 16 2 2151 2354 108856779 108856571 3.560000e-63 254.0
22 TraesCS5B01G132600 chr4D 90.110 91 9 0 5691 5781 30221491 30221581 1.350000e-22 119.0
23 TraesCS5B01G132600 chr4D 97.959 49 1 0 2353 2401 208558601 208558553 1.370000e-12 86.1
24 TraesCS5B01G132600 chr2A 87.384 539 52 13 1 528 497421495 497420962 8.530000e-169 604.0
25 TraesCS5B01G132600 chr2A 92.059 340 25 2 526 863 765215892 765215553 1.940000e-130 477.0
26 TraesCS5B01G132600 chr2A 92.035 339 26 1 526 863 765244721 765244383 6.980000e-130 475.0
27 TraesCS5B01G132600 chr2A 93.367 196 6 2 2165 2354 310407134 310406940 4.540000e-72 283.0
28 TraesCS5B01G132600 chr2A 92.347 196 8 2 2165 2354 449271099 449270905 9.830000e-69 272.0
29 TraesCS5B01G132600 chr2A 98.077 52 1 0 2350 2401 28824187 28824238 2.950000e-14 91.6
30 TraesCS5B01G132600 chr2A 100.000 47 0 0 2353 2399 416922983 416922937 3.820000e-13 87.9
31 TraesCS5B01G132600 chr2A 87.879 66 5 3 2353 2417 495540741 495540678 2.970000e-09 75.0
32 TraesCS5B01G132600 chr2B 86.502 526 57 11 1 523 686839489 686838975 4.030000e-157 566.0
33 TraesCS5B01G132600 chr2B 91.813 342 26 2 526 865 475125226 475124885 6.980000e-130 475.0
34 TraesCS5B01G132600 chr2B 85.256 312 37 7 220 528 114040041 114040346 5.790000e-81 313.0
35 TraesCS5B01G132600 chr2B 90.955 199 11 2 2162 2354 601187688 601187885 2.130000e-65 261.0
36 TraesCS5B01G132600 chr6B 84.557 531 64 13 3 528 633680478 633680995 1.910000e-140 510.0
37 TraesCS5B01G132600 chr6B 81.081 185 33 2 7476 7659 4568856 4569039 6.210000e-31 147.0
38 TraesCS5B01G132600 chr1B 92.105 342 25 2 526 865 589132791 589132450 1.500000e-131 481.0
39 TraesCS5B01G132600 chr1B 93.103 87 6 0 5691 5777 193283064 193283150 2.250000e-25 128.0
40 TraesCS5B01G132600 chr1B 87.500 112 13 1 2055 2165 501941596 501941707 2.250000e-25 128.0
41 TraesCS5B01G132600 chr1B 98.000 50 1 0 2350 2399 610173797 610173846 3.820000e-13 87.9
42 TraesCS5B01G132600 chr3B 92.059 340 25 2 526 863 46617634 46617973 1.940000e-130 477.0
43 TraesCS5B01G132600 chr3B 92.059 340 25 2 526 863 824304715 824305054 1.940000e-130 477.0
44 TraesCS5B01G132600 chr3B 92.035 339 25 2 526 863 46489598 46489935 6.980000e-130 475.0
45 TraesCS5B01G132600 chr7B 82.642 530 68 15 1 525 149642942 149643452 1.520000e-121 448.0
46 TraesCS5B01G132600 chr7B 75.000 156 33 6 7478 7630 749721332 749721180 4.980000e-07 67.6
47 TraesCS5B01G132600 chr6D 82.264 530 69 17 1 524 381178030 381177520 1.180000e-117 435.0
48 TraesCS5B01G132600 chr6D 86.667 105 12 2 5684 5787 94768023 94768126 1.750000e-21 115.0
49 TraesCS5B01G132600 chr6D 86.408 103 13 1 5691 5792 128910382 128910484 2.270000e-20 111.0
50 TraesCS5B01G132600 chr6D 87.912 91 9 2 5691 5780 157930406 157930495 1.050000e-18 106.0
51 TraesCS5B01G132600 chr6D 86.813 91 12 0 5691 5781 78080173 78080263 1.360000e-17 102.0
52 TraesCS5B01G132600 chr6D 87.692 65 8 0 5706 5770 372431214 372431278 8.270000e-10 76.8
53 TraesCS5B01G132600 chr6D 97.561 41 1 0 5691 5731 338696129 338696169 3.850000e-08 71.3
54 TraesCS5B01G132600 chr6D 78.992 119 11 5 5691 5806 122992191 122992084 1.380000e-07 69.4
55 TraesCS5B01G132600 chr6D 95.238 42 2 0 5690 5731 88875914 88875955 4.980000e-07 67.6
56 TraesCS5B01G132600 chr6D 93.023 43 3 0 5691 5733 166775073 166775115 6.440000e-06 63.9
57 TraesCS5B01G132600 chr1A 80.479 543 75 19 1 526 11919365 11919893 3.360000e-103 387.0
58 TraesCS5B01G132600 chr1A 88.776 98 7 4 5691 5787 460934570 460934476 4.870000e-22 117.0
59 TraesCS5B01G132600 chr1A 98.000 50 1 0 2350 2399 542002621 542002670 3.820000e-13 87.9
60 TraesCS5B01G132600 chrUn 88.489 278 26 5 249 525 101577870 101578142 1.600000e-86 331.0
61 TraesCS5B01G132600 chrUn 89.706 204 14 2 2157 2354 119818317 119818115 3.560000e-63 254.0
62 TraesCS5B01G132600 chrUn 96.154 52 2 0 2350 2401 130475582 130475633 1.370000e-12 86.1
63 TraesCS5B01G132600 chr2D 87.857 280 26 8 248 523 68582114 68581839 9.620000e-84 322.0
64 TraesCS5B01G132600 chr2D 93.367 196 6 2 2165 2354 249891798 249891992 4.540000e-72 283.0
65 TraesCS5B01G132600 chr2D 90.526 95 9 0 2071 2165 367919886 367919980 8.100000e-25 126.0
66 TraesCS5B01G132600 chr2D 89.000 100 9 2 5689 5787 120105954 120106052 1.050000e-23 122.0
67 TraesCS5B01G132600 chr2D 88.350 103 9 3 5691 5791 290739041 290738940 3.770000e-23 121.0
68 TraesCS5B01G132600 chr4A 91.960 199 9 2 2162 2354 115567241 115567044 9.830000e-69 272.0
69 TraesCS5B01G132600 chr4A 83.505 291 36 6 2072 2354 438239355 438239641 2.130000e-65 261.0
70 TraesCS5B01G132600 chr4A 93.617 94 6 0 2072 2165 477033210 477033303 2.890000e-29 141.0
71 TraesCS5B01G132600 chr4A 96.154 52 2 0 2350 2401 276912727 276912778 1.370000e-12 86.1
72 TraesCS5B01G132600 chr4A 91.667 60 4 1 2340 2398 98602750 98602809 1.780000e-11 82.4
73 TraesCS5B01G132600 chr4B 92.632 190 10 3 2165 2354 127472868 127473053 3.530000e-68 270.0
74 TraesCS5B01G132600 chr4B 90.500 200 12 2 2161 2354 390665476 390665674 2.750000e-64 257.0
75 TraesCS5B01G132600 chr4B 86.190 210 29 0 7476 7685 13058751 13058960 2.160000e-55 228.0
76 TraesCS5B01G132600 chr3A 92.632 95 7 0 2071 2165 621323743 621323837 3.740000e-28 137.0
77 TraesCS5B01G132600 chr3A 90.099 101 10 0 2071 2171 420739493 420739393 1.740000e-26 132.0
78 TraesCS5B01G132600 chr3A 90.000 60 6 0 2353 2412 23366675 23366616 2.300000e-10 78.7
79 TraesCS5B01G132600 chr1D 93.103 87 6 0 5691 5777 143955470 143955556 2.250000e-25 128.0
80 TraesCS5B01G132600 chr1D 89.655 87 7 2 5702 5787 143955555 143955470 8.150000e-20 110.0
81 TraesCS5B01G132600 chr1D 82.407 108 19 0 5683 5790 332929621 332929728 2.280000e-15 95.3
82 TraesCS5B01G132600 chr6A 87.255 102 13 0 5686 5787 93798345 93798446 4.870000e-22 117.0
83 TraesCS5B01G132600 chr6A 87.379 103 9 2 5687 5787 93892297 93892397 1.750000e-21 115.0
84 TraesCS5B01G132600 chr6A 88.764 89 8 2 5691 5778 213872280 213872193 2.930000e-19 108.0
85 TraesCS5B01G132600 chr6A 87.097 93 11 1 5689 5781 23608944 23609035 3.790000e-18 104.0
86 TraesCS5B01G132600 chr6A 98.000 50 1 0 2350 2399 115319484 115319533 3.820000e-13 87.9
87 TraesCS5B01G132600 chr6A 96.154 52 2 0 2350 2401 25693269 25693320 1.370000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G132600 chr5B 247250434 247258118 7684 False 3581 13245 99.456500 1 7685 4 chr5B.!!$F1 7684
1 TraesCS5B01G132600 chr5D 223955333 223962703 7370 True 3966 5912 93.201333 1 7685 3 chr5D.!!$R2 7684
2 TraesCS5B01G132600 chr5D 17781463 17781977 514 True 527 527 85.255000 1 523 1 chr5D.!!$R1 522
3 TraesCS5B01G132600 chr5A 298803171 298809374 6203 True 3355 5854 95.863667 885 7172 3 chr5A.!!$R1 6287
4 TraesCS5B01G132600 chr3D 53620282 53620815 533 True 743 743 91.963000 1 528 1 chr3D.!!$R1 527
5 TraesCS5B01G132600 chr4D 370067604 370068129 525 False 701 701 90.720000 3 528 1 chr4D.!!$F3 525
6 TraesCS5B01G132600 chr2A 497420962 497421495 533 True 604 604 87.384000 1 528 1 chr2A.!!$R5 527
7 TraesCS5B01G132600 chr2B 686838975 686839489 514 True 566 566 86.502000 1 523 1 chr2B.!!$R2 522
8 TraesCS5B01G132600 chr6B 633680478 633680995 517 False 510 510 84.557000 3 528 1 chr6B.!!$F2 525
9 TraesCS5B01G132600 chr7B 149642942 149643452 510 False 448 448 82.642000 1 525 1 chr7B.!!$F1 524
10 TraesCS5B01G132600 chr6D 381177520 381178030 510 True 435 435 82.264000 1 524 1 chr6D.!!$R2 523
11 TraesCS5B01G132600 chr1A 11919365 11919893 528 False 387 387 80.479000 1 526 1 chr1A.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 738 0.252284 AGTTCGGGTGAGGAGGTGAT 60.252 55.000 0.00 0.00 0.00 3.06 F
714 765 0.951558 TTCTTTTCTTCGGTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25 F
1862 1935 1.299541 ATTGCTTTAGCCATCGACGG 58.700 50.000 0.00 0.00 41.18 4.79 F
3153 3241 2.110753 AGGGGAGATTCTCTAAGCCC 57.889 55.000 13.22 14.03 31.32 5.19 F
3606 3779 0.040157 TTCTTGATTGCTGTGCGTGC 60.040 50.000 0.00 0.00 0.00 5.34 F
3652 3825 0.251073 GCCCAACTTTACTCGCCCTA 59.749 55.000 0.00 0.00 0.00 3.53 F
3661 3834 1.103803 TACTCGCCCTACTGCTTGAG 58.896 55.000 0.00 0.00 0.00 3.02 F
3662 3835 1.142748 CTCGCCCTACTGCTTGAGG 59.857 63.158 0.00 0.00 0.00 3.86 F
4667 4842 1.612726 CCTTTCCAGCTTGAGACCCTG 60.613 57.143 0.00 0.00 0.00 4.45 F
5492 5669 2.202932 CGGATTCACAGGAGGGCG 60.203 66.667 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 2318 1.075212 TCCATGTGCCAGAACCATGAA 59.925 47.619 0.00 0.00 38.56 2.57 R
2655 2732 1.143305 GCATAGCGCATGTACAGGAG 58.857 55.000 12.53 9.58 41.79 3.69 R
3587 3760 0.040157 GCACGCACAGCAATCAAGAA 60.040 50.000 0.00 0.00 0.00 2.52 R
4667 4842 0.307760 CGAGCCACAACAAAGTGACC 59.692 55.000 0.00 0.00 42.05 4.02 R
5064 5239 0.399091 TCCAGAGGATCAAGGGCGAT 60.399 55.000 0.00 0.00 37.82 4.58 R
5354 5529 1.069204 GAGCTTGATGCCGGACTCATA 59.931 52.381 5.05 0.00 44.23 2.15 R
5616 5793 5.821204 CCGAAATCTCATTTGGGTCAATAC 58.179 41.667 2.67 0.00 41.50 1.89 R
5700 5877 5.705609 AACTGCGACACTTATTTTGGATT 57.294 34.783 0.00 0.00 0.00 3.01 R
6421 6616 1.805254 CCACTGCTATGCCTGCAAC 59.195 57.895 0.00 0.00 40.13 4.17 R
6927 7125 2.086054 ACAAGCGCTTAACCTGAGAG 57.914 50.000 24.55 9.61 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 2.138179 GTACCATAGAGGGGCGGCA 61.138 63.158 12.47 0.00 43.89 5.69
286 296 2.105128 GCTCGATCCGACCAGGTG 59.895 66.667 0.00 0.00 41.99 4.00
442 488 2.679336 ACAAAACCGTATAATGGACCGC 59.321 45.455 0.00 0.00 0.00 5.68
541 590 0.538118 TAATAGTCGTGGTGGGGTGC 59.462 55.000 0.00 0.00 0.00 5.01
543 592 3.839046 TAGTCGTGGTGGGGTGCCT 62.839 63.158 0.00 0.00 0.00 4.75
566 615 0.670546 CTGGAGTTCGATGGCGTGTT 60.671 55.000 0.00 0.00 38.98 3.32
587 636 3.066198 GGTGTTGCCCGGTCTAGT 58.934 61.111 0.00 0.00 0.00 2.57
589 638 0.672711 GGTGTTGCCCGGTCTAGTTC 60.673 60.000 0.00 0.00 0.00 3.01
610 660 1.067635 GTTCAACGGCAATGGCTTCAT 60.068 47.619 5.02 0.00 40.87 2.57
616 666 1.733360 CGGCAATGGCTTCATTTTTGG 59.267 47.619 5.02 0.00 38.92 3.28
671 721 3.760035 AATGGAGCCGCGTCGAGT 61.760 61.111 4.92 0.00 0.00 4.18
680 730 2.504244 GCGTCGAGTTCGGGTGAG 60.504 66.667 0.00 0.00 40.29 3.51
688 738 0.252284 AGTTCGGGTGAGGAGGTGAT 60.252 55.000 0.00 0.00 0.00 3.06
714 765 0.951558 TTCTTTTCTTCGGTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
728 779 4.624364 CTGCTGTGGTGGTGCCGA 62.624 66.667 0.00 0.00 41.21 5.54
744 795 3.123620 GAAGGCAGCTGACAGGCG 61.124 66.667 24.55 0.00 37.29 5.52
778 829 4.261994 GCTCAGAGATGTTCTACCATCCTC 60.262 50.000 0.00 0.00 41.79 3.71
792 843 4.330250 ACCATCCTCTCAGTTTTGTCATG 58.670 43.478 0.00 0.00 0.00 3.07
799 850 3.069586 TCTCAGTTTTGTCATGTCGGTCT 59.930 43.478 0.00 0.00 0.00 3.85
807 858 2.034939 TGTCATGTCGGTCTTTACGTGT 59.965 45.455 0.00 0.00 34.81 4.49
851 902 8.986477 TGATATGAATGAGACATGTATTACCG 57.014 34.615 0.00 0.00 0.00 4.02
902 956 1.599797 CCAGCGAAAACCCCGTTCT 60.600 57.895 0.00 0.00 0.00 3.01
1084 1153 1.628846 ACCTCCAACTTATCCGTGCTT 59.371 47.619 0.00 0.00 0.00 3.91
1667 1736 6.816377 GCGATGAGCTCTATTAGTGAATTTC 58.184 40.000 16.19 0.00 44.04 2.17
1703 1772 7.592938 TGAAAATCGTCAAAATCACTTAGCAT 58.407 30.769 0.00 0.00 0.00 3.79
1862 1935 1.299541 ATTGCTTTAGCCATCGACGG 58.700 50.000 0.00 0.00 41.18 4.79
1893 1967 6.648879 ACTTTTGCATGTATTGTACTGGTT 57.351 33.333 0.00 0.00 0.00 3.67
2090 2164 4.142160 GCAACCTCCATCCCAAATTACTTC 60.142 45.833 0.00 0.00 0.00 3.01
2232 2309 6.072199 AGAGCTGAAACCCATAAGAATCTT 57.928 37.500 0.00 0.00 0.00 2.40
2241 2318 5.025453 ACCCATAAGAATCTTGCAACCAAT 58.975 37.500 5.64 0.00 0.00 3.16
2328 2405 7.669722 GGTGATACTCCTCAGATCTCTCTTTAT 59.330 40.741 0.00 0.00 0.00 1.40
2386 2463 8.793592 ACAAATCTAAGACAAGTAATTTGGGAC 58.206 33.333 9.60 0.00 41.25 4.46
2575 2652 9.467258 TTGAAGATTGAAAACTGCTTTGATTAG 57.533 29.630 0.00 0.00 0.00 1.73
2582 2659 7.885297 TGAAAACTGCTTTGATTAGTATTGCT 58.115 30.769 0.00 0.00 0.00 3.91
2862 2946 4.229876 GCAGGAGTTCAAACATGCTTAAC 58.770 43.478 0.00 0.00 34.43 2.01
2876 2960 3.845178 TGCTTAACGTAGTGACAGATGG 58.155 45.455 0.00 0.00 45.00 3.51
2909 2994 6.321181 AGAGAGTGGCAAAACTTTCATGTTAA 59.679 34.615 0.00 0.00 34.53 2.01
3022 3110 8.672823 AAAATAGTTAACAGAAAGACCGAAGT 57.327 30.769 8.61 0.00 0.00 3.01
3024 3112 7.886405 ATAGTTAACAGAAAGACCGAAGTTC 57.114 36.000 8.61 0.00 0.00 3.01
3088 3176 3.955650 TTCTTACCCAGAAGTTCTCCG 57.044 47.619 1.26 0.00 36.51 4.63
3100 3188 4.399934 AGAAGTTCTCCGATACTTGAGGTC 59.600 45.833 0.00 0.00 34.88 3.85
3103 3191 3.367646 TCTCCGATACTTGAGGTCTGT 57.632 47.619 0.00 0.00 0.00 3.41
3139 3227 7.673926 AGACTTAATTTGCTTTTCATAAGGGGA 59.326 33.333 0.00 0.00 0.00 4.81
3153 3241 2.110753 AGGGGAGATTCTCTAAGCCC 57.889 55.000 13.22 14.03 31.32 5.19
3275 3363 6.922407 ACTGAAAAGAACCTCTTTCGTAGTAC 59.078 38.462 2.28 0.00 45.19 2.73
3335 3423 6.051717 GCTGAAAGGAGCAATGAGTAGAATA 58.948 40.000 0.00 0.00 38.95 1.75
3398 3571 2.540931 CTGCCATTTGTTTTCACTGTGC 59.459 45.455 2.12 0.00 0.00 4.57
3413 3586 7.921786 TTCACTGTGCATACTAGCTTTTATT 57.078 32.000 2.12 0.00 34.99 1.40
3514 3687 4.994852 TGGTATTGCTCTACAACTTGTGTC 59.005 41.667 4.57 0.00 42.27 3.67
3565 3738 7.019418 CAGTTTGGACATGATATGAATATGCG 58.981 38.462 0.00 0.00 0.00 4.73
3566 3739 6.712095 AGTTTGGACATGATATGAATATGCGT 59.288 34.615 0.00 0.00 0.00 5.24
3567 3740 7.877612 AGTTTGGACATGATATGAATATGCGTA 59.122 33.333 0.00 0.00 0.00 4.42
3568 3741 8.503196 GTTTGGACATGATATGAATATGCGTAA 58.497 33.333 0.00 0.00 0.00 3.18
3569 3742 7.595311 TGGACATGATATGAATATGCGTAAC 57.405 36.000 0.00 0.00 0.00 2.50
3570 3743 7.386059 TGGACATGATATGAATATGCGTAACT 58.614 34.615 0.00 0.00 0.00 2.24
3571 3744 8.527810 TGGACATGATATGAATATGCGTAACTA 58.472 33.333 0.00 0.00 0.00 2.24
3572 3745 9.366216 GGACATGATATGAATATGCGTAACTAA 57.634 33.333 0.00 0.00 0.00 2.24
3600 3773 9.545105 TTCAAATGTTAAATTCTTGATTGCTGT 57.455 25.926 0.00 0.00 0.00 4.40
3601 3774 8.980610 TCAAATGTTAAATTCTTGATTGCTGTG 58.019 29.630 0.00 0.00 0.00 3.66
3602 3775 6.956299 ATGTTAAATTCTTGATTGCTGTGC 57.044 33.333 0.00 0.00 0.00 4.57
3603 3776 4.916831 TGTTAAATTCTTGATTGCTGTGCG 59.083 37.500 0.00 0.00 0.00 5.34
3604 3777 3.648339 AAATTCTTGATTGCTGTGCGT 57.352 38.095 0.00 0.00 0.00 5.24
3605 3778 2.624316 ATTCTTGATTGCTGTGCGTG 57.376 45.000 0.00 0.00 0.00 5.34
3606 3779 0.040157 TTCTTGATTGCTGTGCGTGC 60.040 50.000 0.00 0.00 0.00 5.34
3607 3780 0.886043 TCTTGATTGCTGTGCGTGCT 60.886 50.000 0.00 0.00 0.00 4.40
3608 3781 0.798159 CTTGATTGCTGTGCGTGCTA 59.202 50.000 0.00 0.00 0.00 3.49
3609 3782 1.197492 CTTGATTGCTGTGCGTGCTAA 59.803 47.619 0.00 0.00 0.00 3.09
3610 3783 0.516877 TGATTGCTGTGCGTGCTAAC 59.483 50.000 0.00 0.00 0.00 2.34
3611 3784 0.798776 GATTGCTGTGCGTGCTAACT 59.201 50.000 0.00 0.00 0.00 2.24
3612 3785 0.518636 ATTGCTGTGCGTGCTAACTG 59.481 50.000 0.00 0.00 0.00 3.16
3613 3786 2.116736 TTGCTGTGCGTGCTAACTGC 62.117 55.000 7.08 7.08 40.48 4.40
3614 3787 2.320587 GCTGTGCGTGCTAACTGCT 61.321 57.895 6.85 0.00 43.37 4.24
3615 3788 1.845809 GCTGTGCGTGCTAACTGCTT 61.846 55.000 6.85 0.00 43.37 3.91
3616 3789 1.428448 CTGTGCGTGCTAACTGCTTA 58.572 50.000 0.00 0.00 43.37 3.09
3617 3790 2.002586 CTGTGCGTGCTAACTGCTTAT 58.997 47.619 0.00 0.00 43.37 1.73
3618 3791 1.999735 TGTGCGTGCTAACTGCTTATC 59.000 47.619 0.00 0.00 43.37 1.75
3619 3792 1.999735 GTGCGTGCTAACTGCTTATCA 59.000 47.619 0.00 0.00 43.37 2.15
3620 3793 2.609459 GTGCGTGCTAACTGCTTATCAT 59.391 45.455 0.00 0.00 43.37 2.45
3621 3794 2.866156 TGCGTGCTAACTGCTTATCATC 59.134 45.455 0.00 0.00 43.37 2.92
3622 3795 3.126831 GCGTGCTAACTGCTTATCATCT 58.873 45.455 0.00 0.00 43.37 2.90
3623 3796 3.060003 GCGTGCTAACTGCTTATCATCTG 60.060 47.826 0.00 0.00 43.37 2.90
3624 3797 4.363138 CGTGCTAACTGCTTATCATCTGA 58.637 43.478 0.00 0.00 43.37 3.27
3625 3798 4.805719 CGTGCTAACTGCTTATCATCTGAA 59.194 41.667 0.00 0.00 43.37 3.02
3626 3799 5.464722 CGTGCTAACTGCTTATCATCTGAAT 59.535 40.000 0.00 0.00 43.37 2.57
3627 3800 6.642540 CGTGCTAACTGCTTATCATCTGAATA 59.357 38.462 0.00 0.00 43.37 1.75
3628 3801 7.330454 CGTGCTAACTGCTTATCATCTGAATAT 59.670 37.037 0.00 0.00 43.37 1.28
3629 3802 8.441608 GTGCTAACTGCTTATCATCTGAATATG 58.558 37.037 0.00 0.00 43.37 1.78
3630 3803 8.152898 TGCTAACTGCTTATCATCTGAATATGT 58.847 33.333 0.00 0.00 43.37 2.29
3631 3804 9.645059 GCTAACTGCTTATCATCTGAATATGTA 57.355 33.333 0.00 0.00 38.95 2.29
3634 3807 8.489990 ACTGCTTATCATCTGAATATGTATGC 57.510 34.615 0.00 0.00 0.00 3.14
3635 3808 7.551974 ACTGCTTATCATCTGAATATGTATGCC 59.448 37.037 0.00 0.00 0.00 4.40
3636 3809 6.825213 TGCTTATCATCTGAATATGTATGCCC 59.175 38.462 0.00 0.00 0.00 5.36
3637 3810 6.825213 GCTTATCATCTGAATATGTATGCCCA 59.175 38.462 0.00 0.00 0.00 5.36
3638 3811 7.337689 GCTTATCATCTGAATATGTATGCCCAA 59.662 37.037 0.00 0.00 0.00 4.12
3639 3812 8.565896 TTATCATCTGAATATGTATGCCCAAC 57.434 34.615 0.00 0.00 0.00 3.77
3640 3813 6.191657 TCATCTGAATATGTATGCCCAACT 57.808 37.500 0.00 0.00 0.00 3.16
3641 3814 6.604171 TCATCTGAATATGTATGCCCAACTT 58.396 36.000 0.00 0.00 0.00 2.66
3642 3815 7.062322 TCATCTGAATATGTATGCCCAACTTT 58.938 34.615 0.00 0.00 0.00 2.66
3643 3816 8.217111 TCATCTGAATATGTATGCCCAACTTTA 58.783 33.333 0.00 0.00 0.00 1.85
3644 3817 7.801716 TCTGAATATGTATGCCCAACTTTAC 57.198 36.000 0.00 0.00 0.00 2.01
3645 3818 7.573710 TCTGAATATGTATGCCCAACTTTACT 58.426 34.615 0.00 0.00 0.00 2.24
3646 3819 7.715249 TCTGAATATGTATGCCCAACTTTACTC 59.285 37.037 0.00 0.00 0.00 2.59
3647 3820 6.481976 TGAATATGTATGCCCAACTTTACTCG 59.518 38.462 0.00 0.00 0.00 4.18
3648 3821 2.352388 TGTATGCCCAACTTTACTCGC 58.648 47.619 0.00 0.00 0.00 5.03
3649 3822 1.669265 GTATGCCCAACTTTACTCGCC 59.331 52.381 0.00 0.00 0.00 5.54
3650 3823 0.679960 ATGCCCAACTTTACTCGCCC 60.680 55.000 0.00 0.00 0.00 6.13
3651 3824 1.002502 GCCCAACTTTACTCGCCCT 60.003 57.895 0.00 0.00 0.00 5.19
3652 3825 0.251073 GCCCAACTTTACTCGCCCTA 59.749 55.000 0.00 0.00 0.00 3.53
3653 3826 2.010544 GCCCAACTTTACTCGCCCTAC 61.011 57.143 0.00 0.00 0.00 3.18
3654 3827 1.553704 CCCAACTTTACTCGCCCTACT 59.446 52.381 0.00 0.00 0.00 2.57
3655 3828 2.618053 CCAACTTTACTCGCCCTACTG 58.382 52.381 0.00 0.00 0.00 2.74
3656 3829 2.000447 CAACTTTACTCGCCCTACTGC 59.000 52.381 0.00 0.00 0.00 4.40
3657 3830 1.558233 ACTTTACTCGCCCTACTGCT 58.442 50.000 0.00 0.00 0.00 4.24
3658 3831 1.900486 ACTTTACTCGCCCTACTGCTT 59.100 47.619 0.00 0.00 0.00 3.91
3659 3832 2.271800 CTTTACTCGCCCTACTGCTTG 58.728 52.381 0.00 0.00 0.00 4.01
3660 3833 1.552578 TTACTCGCCCTACTGCTTGA 58.447 50.000 0.00 0.00 0.00 3.02
3661 3834 1.103803 TACTCGCCCTACTGCTTGAG 58.896 55.000 0.00 0.00 0.00 3.02
3662 3835 1.142748 CTCGCCCTACTGCTTGAGG 59.857 63.158 0.00 0.00 0.00 3.86
3671 3844 5.559148 CCTACTGCTTGAGGGATCTAATT 57.441 43.478 0.00 0.00 0.00 1.40
3672 3845 5.303971 CCTACTGCTTGAGGGATCTAATTG 58.696 45.833 0.00 0.00 0.00 2.32
3673 3846 3.549794 ACTGCTTGAGGGATCTAATTGC 58.450 45.455 0.00 0.00 0.00 3.56
3674 3847 3.201708 ACTGCTTGAGGGATCTAATTGCT 59.798 43.478 0.00 0.00 0.00 3.91
3675 3848 4.205587 CTGCTTGAGGGATCTAATTGCTT 58.794 43.478 0.00 0.00 0.00 3.91
3676 3849 4.603131 TGCTTGAGGGATCTAATTGCTTT 58.397 39.130 0.00 0.00 0.00 3.51
3677 3850 5.754782 TGCTTGAGGGATCTAATTGCTTTA 58.245 37.500 0.00 0.00 0.00 1.85
3678 3851 6.367983 TGCTTGAGGGATCTAATTGCTTTAT 58.632 36.000 0.00 0.00 0.00 1.40
3679 3852 6.835488 TGCTTGAGGGATCTAATTGCTTTATT 59.165 34.615 0.00 0.00 0.00 1.40
3680 3853 7.144000 GCTTGAGGGATCTAATTGCTTTATTG 58.856 38.462 0.00 0.00 0.00 1.90
3681 3854 7.587037 TTGAGGGATCTAATTGCTTTATTGG 57.413 36.000 0.00 0.00 0.00 3.16
3682 3855 6.672593 TGAGGGATCTAATTGCTTTATTGGT 58.327 36.000 0.00 0.00 0.00 3.67
3683 3856 7.811282 TGAGGGATCTAATTGCTTTATTGGTA 58.189 34.615 0.00 0.00 0.00 3.25
3684 3857 8.448008 TGAGGGATCTAATTGCTTTATTGGTAT 58.552 33.333 0.00 0.00 0.00 2.73
3685 3858 9.301897 GAGGGATCTAATTGCTTTATTGGTATT 57.698 33.333 0.00 0.00 0.00 1.89
3686 3859 9.082313 AGGGATCTAATTGCTTTATTGGTATTG 57.918 33.333 0.00 0.00 0.00 1.90
3687 3860 7.814587 GGGATCTAATTGCTTTATTGGTATTGC 59.185 37.037 0.00 0.00 0.00 3.56
3688 3861 8.579863 GGATCTAATTGCTTTATTGGTATTGCT 58.420 33.333 0.00 0.00 0.00 3.91
3689 3862 9.617975 GATCTAATTGCTTTATTGGTATTGCTC 57.382 33.333 0.00 0.00 0.00 4.26
3690 3863 8.752005 TCTAATTGCTTTATTGGTATTGCTCT 57.248 30.769 0.00 0.00 0.00 4.09
3691 3864 9.845740 TCTAATTGCTTTATTGGTATTGCTCTA 57.154 29.630 0.00 0.00 0.00 2.43
3692 3865 9.884465 CTAATTGCTTTATTGGTATTGCTCTAC 57.116 33.333 0.00 0.00 0.00 2.59
3693 3866 7.880160 ATTGCTTTATTGGTATTGCTCTACA 57.120 32.000 0.00 0.00 0.00 2.74
3694 3867 7.695480 TTGCTTTATTGGTATTGCTCTACAA 57.305 32.000 0.00 0.00 44.01 2.41
3695 3868 7.083875 TGCTTTATTGGTATTGCTCTACAAC 57.916 36.000 0.00 0.00 42.27 3.32
3696 3869 6.884295 TGCTTTATTGGTATTGCTCTACAACT 59.116 34.615 0.00 0.00 42.27 3.16
3697 3870 7.393234 TGCTTTATTGGTATTGCTCTACAACTT 59.607 33.333 0.00 0.00 42.27 2.66
3698 3871 7.698130 GCTTTATTGGTATTGCTCTACAACTTG 59.302 37.037 0.00 0.00 42.27 3.16
3699 3872 8.630054 TTTATTGGTATTGCTCTACAACTTGT 57.370 30.769 0.00 0.00 42.27 3.16
3700 3873 5.940192 TTGGTATTGCTCTACAACTTGTG 57.060 39.130 4.57 0.00 42.27 3.33
3701 3874 5.222079 TGGTATTGCTCTACAACTTGTGA 57.778 39.130 4.57 0.24 42.27 3.58
3702 3875 5.616270 TGGTATTGCTCTACAACTTGTGAA 58.384 37.500 4.57 0.00 42.27 3.18
3703 3876 6.237901 TGGTATTGCTCTACAACTTGTGAAT 58.762 36.000 4.57 0.00 42.27 2.57
3704 3877 6.149308 TGGTATTGCTCTACAACTTGTGAATG 59.851 38.462 4.57 0.00 42.27 2.67
3705 3878 6.371548 GGTATTGCTCTACAACTTGTGAATGA 59.628 38.462 4.57 0.00 42.27 2.57
3706 3879 6.882610 ATTGCTCTACAACTTGTGAATGAA 57.117 33.333 4.57 0.00 42.27 2.57
3707 3880 5.929697 TGCTCTACAACTTGTGAATGAAG 57.070 39.130 4.57 0.00 0.00 3.02
3708 3881 4.214119 TGCTCTACAACTTGTGAATGAAGC 59.786 41.667 4.57 5.26 0.00 3.86
3709 3882 4.453819 GCTCTACAACTTGTGAATGAAGCT 59.546 41.667 4.57 0.00 0.00 3.74
3710 3883 5.049129 GCTCTACAACTTGTGAATGAAGCTT 60.049 40.000 0.00 0.00 0.00 3.74
3711 3884 6.147821 GCTCTACAACTTGTGAATGAAGCTTA 59.852 38.462 0.00 0.00 0.00 3.09
3712 3885 7.307989 GCTCTACAACTTGTGAATGAAGCTTAA 60.308 37.037 0.00 0.00 0.00 1.85
3713 3886 7.861630 TCTACAACTTGTGAATGAAGCTTAAC 58.138 34.615 0.00 0.00 0.00 2.01
3714 3887 6.449635 ACAACTTGTGAATGAAGCTTAACA 57.550 33.333 0.00 0.00 0.00 2.41
3715 3888 7.042797 ACAACTTGTGAATGAAGCTTAACAT 57.957 32.000 0.00 0.00 0.00 2.71
3716 3889 7.141363 ACAACTTGTGAATGAAGCTTAACATC 58.859 34.615 0.00 0.00 0.00 3.06
3717 3890 6.259550 ACTTGTGAATGAAGCTTAACATCC 57.740 37.500 0.00 0.00 0.00 3.51
3718 3891 5.769662 ACTTGTGAATGAAGCTTAACATCCA 59.230 36.000 0.00 0.00 0.00 3.41
3719 3892 5.627499 TGTGAATGAAGCTTAACATCCAC 57.373 39.130 9.67 9.67 33.54 4.02
3720 3893 5.316167 TGTGAATGAAGCTTAACATCCACT 58.684 37.500 15.41 0.00 33.95 4.00
3721 3894 6.472016 TGTGAATGAAGCTTAACATCCACTA 58.528 36.000 15.41 3.57 33.95 2.74
3722 3895 6.939730 TGTGAATGAAGCTTAACATCCACTAA 59.060 34.615 15.41 0.00 33.95 2.24
3723 3896 7.611467 TGTGAATGAAGCTTAACATCCACTAAT 59.389 33.333 15.41 0.00 33.95 1.73
3724 3897 8.462016 GTGAATGAAGCTTAACATCCACTAATT 58.538 33.333 9.41 0.00 31.03 1.40
3725 3898 9.023962 TGAATGAAGCTTAACATCCACTAATTT 57.976 29.630 0.00 0.00 0.00 1.82
3726 3899 9.508567 GAATGAAGCTTAACATCCACTAATTTC 57.491 33.333 0.00 0.00 0.00 2.17
3727 3900 7.994425 TGAAGCTTAACATCCACTAATTTCA 57.006 32.000 0.00 0.00 0.00 2.69
3728 3901 8.044060 TGAAGCTTAACATCCACTAATTTCAG 57.956 34.615 0.00 0.00 0.00 3.02
3729 3902 7.665559 TGAAGCTTAACATCCACTAATTTCAGT 59.334 33.333 0.00 0.00 0.00 3.41
3730 3903 8.409358 AAGCTTAACATCCACTAATTTCAGTT 57.591 30.769 0.00 0.00 0.00 3.16
3731 3904 8.409358 AGCTTAACATCCACTAATTTCAGTTT 57.591 30.769 0.00 0.00 0.00 2.66
3732 3905 8.299570 AGCTTAACATCCACTAATTTCAGTTTG 58.700 33.333 0.00 0.00 0.00 2.93
3733 3906 7.542130 GCTTAACATCCACTAATTTCAGTTTGG 59.458 37.037 0.00 0.00 0.00 3.28
3734 3907 8.698973 TTAACATCCACTAATTTCAGTTTGGA 57.301 30.769 0.00 0.00 0.00 3.53
3735 3908 6.575162 ACATCCACTAATTTCAGTTTGGAC 57.425 37.500 0.00 0.00 0.00 4.02
3736 3909 6.068010 ACATCCACTAATTTCAGTTTGGACA 58.932 36.000 0.00 0.00 0.00 4.02
3737 3910 6.721208 ACATCCACTAATTTCAGTTTGGACAT 59.279 34.615 0.00 0.00 0.00 3.06
3738 3911 6.573664 TCCACTAATTTCAGTTTGGACATG 57.426 37.500 0.00 0.00 0.00 3.21
3739 3912 6.303054 TCCACTAATTTCAGTTTGGACATGA 58.697 36.000 0.00 0.00 0.00 3.07
3740 3913 6.947733 TCCACTAATTTCAGTTTGGACATGAT 59.052 34.615 0.00 0.00 0.00 2.45
3741 3914 8.106462 TCCACTAATTTCAGTTTGGACATGATA 58.894 33.333 0.00 0.00 0.00 2.15
3742 3915 8.906867 CCACTAATTTCAGTTTGGACATGATAT 58.093 33.333 0.00 0.00 0.00 1.63
3743 3916 9.726232 CACTAATTTCAGTTTGGACATGATATG 57.274 33.333 0.00 0.00 0.00 1.78
3744 3917 9.685276 ACTAATTTCAGTTTGGACATGATATGA 57.315 29.630 0.00 0.00 0.00 2.15
3750 3923 8.102800 TCAGTTTGGACATGATATGAATATGC 57.897 34.615 0.00 0.00 0.00 3.14
3890 4063 5.753921 CCAAAGGGACGATAGAGTTATCAAC 59.246 44.000 0.00 0.00 34.57 3.18
3924 4097 4.082245 CCTGATTTGTTTTATCTTGCCCGT 60.082 41.667 0.00 0.00 0.00 5.28
4005 4178 5.215160 CACCAACTTGTTGAGCATACTTTC 58.785 41.667 14.30 0.00 0.00 2.62
4278 4451 2.239907 GGAAAGGATGAAGCCCTACAGT 59.760 50.000 0.00 0.00 32.77 3.55
4333 4506 3.906720 ATATAGGTGCGAACACTTGGT 57.093 42.857 0.00 0.00 46.57 3.67
4359 4532 7.497579 TGTGGTTCGATATATAAATTGCACTGT 59.502 33.333 0.00 0.00 0.00 3.55
4411 4584 8.195436 TCATCATAACTCTTTCTAGGTTAACCG 58.805 37.037 18.91 6.10 42.08 4.44
4454 4627 1.741993 GCACTTTTACTGTGTGTGCG 58.258 50.000 11.25 0.00 43.19 5.34
4549 4722 7.716998 TGAGTGAATCAGCTAAATATTCCCTTC 59.283 37.037 0.00 0.00 32.77 3.46
4616 4791 2.957474 ACTGGCCATGGTGTTTTTAGT 58.043 42.857 14.67 4.91 0.00 2.24
4667 4842 1.612726 CCTTTCCAGCTTGAGACCCTG 60.613 57.143 0.00 0.00 0.00 4.45
4731 4906 3.258372 TGATGTTTGTAGGAAGAGTCGCT 59.742 43.478 0.00 0.00 0.00 4.93
4850 5025 6.129179 AGGTGTATGCAGCCAAGTAAAATAT 58.871 36.000 9.50 0.00 43.61 1.28
4942 5117 5.793030 TCTAGCTTTACTCAGGAATAGCC 57.207 43.478 0.00 0.00 0.00 3.93
5064 5239 8.689061 CATTTACTGAATTGAGGGATCAATTGA 58.311 33.333 18.18 11.26 46.56 2.57
5492 5669 2.202932 CGGATTCACAGGAGGGCG 60.203 66.667 0.00 0.00 0.00 6.13
5569 5746 4.679373 TCAAAAAGGCAAATGCTTACCA 57.321 36.364 5.25 0.00 41.70 3.25
5616 5793 6.423905 TCACAGTTCCAGAAGTATTTTTCTCG 59.576 38.462 0.00 0.00 35.28 4.04
5637 5814 6.538742 TCTCGTATTGACCCAAATGAGATTTC 59.461 38.462 0.00 0.00 30.12 2.17
5700 5877 9.496710 TTCTATTCTTATTTGGTACTCCCTACA 57.503 33.333 0.00 0.00 0.00 2.74
5745 5922 9.403583 AGTTTTGAACTAAGATTGAACTAACCA 57.596 29.630 0.00 0.00 40.69 3.67
5799 5976 7.899648 TCGGAGAGAGTAATTCTTTTAGGAT 57.100 36.000 0.00 0.00 35.87 3.24
5800 5977 8.991783 TCGGAGAGAGTAATTCTTTTAGGATA 57.008 34.615 0.00 0.00 35.87 2.59
6022 6201 6.588348 TCATGCTACTTTGTCGAATACATG 57.412 37.500 0.00 0.00 38.10 3.21
6061 6240 6.347696 TGAATCTGGCAAAACTCAATTGTTT 58.652 32.000 5.13 0.00 41.32 2.83
6069 6248 6.146021 GGCAAAACTCAATTGTTTACCATGAG 59.854 38.462 5.13 0.00 42.43 2.90
6322 6517 6.313905 ACTTTAACTATCACCTGCAAGATTCG 59.686 38.462 1.86 0.00 34.07 3.34
6336 6531 2.453521 AGATTCGTGCACCTACTACCA 58.546 47.619 12.15 0.00 0.00 3.25
6834 7031 3.957671 AAACTATCATGCTGATGTGCG 57.042 42.857 8.40 0.00 37.70 5.34
6855 7052 4.083484 GCGGGTGGTTTACATGATTATAGC 60.083 45.833 0.00 0.00 0.00 2.97
6859 7056 4.069304 TGGTTTACATGATTATAGCCGCC 58.931 43.478 0.00 0.00 0.00 6.13
6949 7147 0.591170 TCAGGTTAAGCGCTTGTTGC 59.409 50.000 32.23 17.67 38.57 4.17
7120 7322 1.121850 CATCGTGTTGTGATTGCGCG 61.122 55.000 0.00 0.00 37.46 6.86
7516 7718 2.094182 TGTTGGCGACTACTCCAGAATC 60.094 50.000 4.09 0.00 36.98 2.52
7518 7720 1.342076 TGGCGACTACTCCAGAATCCT 60.342 52.381 0.00 0.00 0.00 3.24
7526 7728 5.337788 ACTACTCCAGAATCCTGACTCTTT 58.662 41.667 0.00 0.00 43.02 2.52
7527 7729 6.494952 ACTACTCCAGAATCCTGACTCTTTA 58.505 40.000 0.00 0.00 43.02 1.85
7528 7730 7.129425 ACTACTCCAGAATCCTGACTCTTTAT 58.871 38.462 0.00 0.00 43.02 1.40
7529 7731 6.232581 ACTCCAGAATCCTGACTCTTTATG 57.767 41.667 0.00 0.00 43.02 1.90
7530 7732 5.723887 ACTCCAGAATCCTGACTCTTTATGT 59.276 40.000 0.00 0.00 43.02 2.29
7531 7733 5.982356 TCCAGAATCCTGACTCTTTATGTG 58.018 41.667 0.00 0.00 43.02 3.21
7532 7734 4.574013 CCAGAATCCTGACTCTTTATGTGC 59.426 45.833 0.00 0.00 43.02 4.57
7533 7735 5.181009 CAGAATCCTGACTCTTTATGTGCA 58.819 41.667 0.00 0.00 43.02 4.57
7534 7736 5.645067 CAGAATCCTGACTCTTTATGTGCAA 59.355 40.000 0.00 0.00 43.02 4.08
7535 7737 6.149973 CAGAATCCTGACTCTTTATGTGCAAA 59.850 38.462 0.00 0.00 43.02 3.68
7536 7738 6.716628 AGAATCCTGACTCTTTATGTGCAAAA 59.283 34.615 0.00 0.00 0.00 2.44
7537 7739 6.899393 ATCCTGACTCTTTATGTGCAAAAA 57.101 33.333 0.00 0.00 0.00 1.94
7540 7742 8.402798 TCCTGACTCTTTATGTGCAAAAATTA 57.597 30.769 0.00 0.00 0.00 1.40
7601 7803 3.722908 AGGCCTTAAGAAGGGTTCTTC 57.277 47.619 0.00 0.00 46.62 2.87
7629 7831 1.303091 GGCAAAGTATTGTCGCGGGT 61.303 55.000 6.13 0.00 38.85 5.28
7644 7846 4.001652 TCGCGGGTATACAAATGTTCAAA 58.998 39.130 6.13 0.00 0.00 2.69
7659 7861 5.287674 TGTTCAAAAAGGGATGCATTTGA 57.712 34.783 0.00 3.53 39.33 2.69
7667 7869 2.245546 AGGGATGCATTTGAAGGATGGA 59.754 45.455 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 42 3.056458 TCGTGACGACCATGCCTT 58.944 55.556 2.39 0.00 0.00 4.35
442 488 1.171308 CTTGCACTTGGGGTCATCTG 58.829 55.000 0.00 0.00 0.00 2.90
541 590 1.539929 GCCATCGAACTCCAGATCAGG 60.540 57.143 0.00 0.00 0.00 3.86
543 592 0.103026 CGCCATCGAACTCCAGATCA 59.897 55.000 0.00 0.00 38.10 2.92
580 629 1.066136 GCCGTTGAACGAACTAGACC 58.934 55.000 20.47 0.00 46.05 3.85
581 630 1.774639 TGCCGTTGAACGAACTAGAC 58.225 50.000 20.47 0.22 46.05 2.59
582 631 2.512485 TTGCCGTTGAACGAACTAGA 57.488 45.000 20.47 0.00 46.05 2.43
583 632 2.159707 CCATTGCCGTTGAACGAACTAG 60.160 50.000 20.47 2.74 46.05 2.57
585 634 0.591170 CCATTGCCGTTGAACGAACT 59.409 50.000 20.47 0.00 46.05 3.01
587 636 1.169661 AGCCATTGCCGTTGAACGAA 61.170 50.000 20.47 6.81 42.28 3.85
589 638 0.729140 GAAGCCATTGCCGTTGAACG 60.729 55.000 11.30 11.30 42.11 3.95
654 704 3.296709 AACTCGACGCGGCTCCATT 62.297 57.895 11.76 0.00 0.00 3.16
671 721 0.976073 GGATCACCTCCTCACCCGAA 60.976 60.000 0.00 0.00 41.29 4.30
680 730 2.990066 AAGAATGACGGATCACCTCC 57.010 50.000 0.00 0.00 37.79 4.30
688 738 3.064207 CACCGAAGAAAAGAATGACGGA 58.936 45.455 0.00 0.00 41.09 4.69
714 765 2.669569 CCTTCGGCACCACCACAG 60.670 66.667 0.00 0.00 39.03 3.66
728 779 3.482232 AACGCCTGTCAGCTGCCTT 62.482 57.895 9.47 0.00 0.00 4.35
735 786 0.813610 TTGACACCAACGCCTGTCAG 60.814 55.000 1.15 0.00 45.72 3.51
740 791 1.598130 GAGCTTGACACCAACGCCT 60.598 57.895 0.00 0.00 31.38 5.52
741 792 1.845809 CTGAGCTTGACACCAACGCC 61.846 60.000 0.00 0.00 31.38 5.68
744 795 2.533266 TCTCTGAGCTTGACACCAAC 57.467 50.000 0.00 0.00 0.00 3.77
778 829 3.393800 AGACCGACATGACAAAACTGAG 58.606 45.455 0.00 0.00 0.00 3.35
792 843 2.735823 ACAAGACACGTAAAGACCGAC 58.264 47.619 0.00 0.00 0.00 4.79
825 876 9.591792 CGGTAATACATGTCTCATTCATATCAT 57.408 33.333 0.00 0.00 0.00 2.45
826 877 8.585018 ACGGTAATACATGTCTCATTCATATCA 58.415 33.333 0.00 0.00 0.00 2.15
827 878 8.864024 CACGGTAATACATGTCTCATTCATATC 58.136 37.037 0.00 0.00 0.00 1.63
828 879 8.585018 TCACGGTAATACATGTCTCATTCATAT 58.415 33.333 0.00 0.00 0.00 1.78
902 956 1.793258 TTAATCGCCGGTTCGTTTGA 58.207 45.000 1.90 0.00 0.00 2.69
1084 1153 0.556380 AGAGGGGAGGAGGAGGAGAA 60.556 60.000 0.00 0.00 0.00 2.87
1555 1624 1.317613 ATGGACGCAAAGTTCTGCAA 58.682 45.000 9.61 0.00 42.77 4.08
1703 1772 6.152661 CCATAGAGCACCTTCAACCAAATTTA 59.847 38.462 0.00 0.00 0.00 1.40
1853 1926 1.508632 AGTTTGTCAACCGTCGATGG 58.491 50.000 22.38 22.38 32.70 3.51
1862 1935 7.232945 ACAATACATGCAAAAGTTTGTCAAC 57.767 32.000 5.71 0.00 40.24 3.18
1893 1967 2.083774 GCAAGGACATGAACCGAATCA 58.916 47.619 0.00 0.00 0.00 2.57
1945 2019 5.039984 CCGATTGATCTGTCTGTGAACTAG 58.960 45.833 0.00 0.00 0.00 2.57
2140 2214 9.000486 TGTAGATTTGTCTAGATACGGATGTAG 58.000 37.037 5.43 5.43 33.17 2.74
2241 2318 1.075212 TCCATGTGCCAGAACCATGAA 59.925 47.619 0.00 0.00 38.56 2.57
2328 2405 1.279496 CTTGACATGGGAGGAGTCCA 58.721 55.000 12.86 0.00 46.07 4.02
2386 2463 3.447586 TCAAATCTCAAGTACTCCCTCCG 59.552 47.826 0.00 0.00 0.00 4.63
2654 2731 1.539065 GCATAGCGCATGTACAGGAGT 60.539 52.381 12.53 1.90 41.79 3.85
2655 2732 1.143305 GCATAGCGCATGTACAGGAG 58.857 55.000 12.53 9.58 41.79 3.69
2656 2733 3.289128 GCATAGCGCATGTACAGGA 57.711 52.632 12.53 0.00 41.79 3.86
2745 2829 5.051708 TGAAGCGTTTCATCGAATATCTTCG 60.052 40.000 10.92 6.89 44.89 3.79
2763 2847 0.311790 AGTGTTGCCAATGTGAAGCG 59.688 50.000 0.00 0.00 0.00 4.68
2854 2938 4.433615 CCATCTGTCACTACGTTAAGCAT 58.566 43.478 0.00 0.00 0.00 3.79
2862 2946 0.902531 AACCCCCATCTGTCACTACG 59.097 55.000 0.00 0.00 0.00 3.51
2876 2960 1.779061 TTGCCACTCTCTGGAACCCC 61.779 60.000 0.00 0.00 43.95 4.95
2909 2994 9.606631 GACATGAACTGAATCTCCTAGTAAAAT 57.393 33.333 0.00 0.00 0.00 1.82
3022 3110 1.906990 AAGACTCGACCGAAGAGGAA 58.093 50.000 6.68 0.00 45.00 3.36
3088 3176 6.274157 TCTTCTTCACAGACCTCAAGTATC 57.726 41.667 0.00 0.00 0.00 2.24
3100 3188 9.160496 AGCAAATTAAGTCTATCTTCTTCACAG 57.840 33.333 0.00 0.00 37.56 3.66
3190 3278 9.606631 TCAAAAACATTTGTAGCTGGTAAATTT 57.393 25.926 0.00 0.00 33.82 1.82
3191 3279 9.040939 GTCAAAAACATTTGTAGCTGGTAAATT 57.959 29.630 0.00 0.00 33.82 1.82
3192 3280 8.200792 TGTCAAAAACATTTGTAGCTGGTAAAT 58.799 29.630 0.00 0.00 31.20 1.40
3335 3423 9.632638 ATGCCATAAGAACTGTTCATAACTAAT 57.367 29.630 21.50 5.98 0.00 1.73
3398 3571 8.269424 CAGTTAGCACGAATAAAAGCTAGTATG 58.731 37.037 0.00 0.00 40.30 2.39
3514 3687 9.294030 GAAATTAGTGGATGTTAAGCTTCATTG 57.706 33.333 0.00 0.00 0.00 2.82
3574 3747 9.545105 ACAGCAATCAAGAATTTAACATTTGAA 57.455 25.926 0.00 0.00 32.21 2.69
3575 3748 8.980610 CACAGCAATCAAGAATTTAACATTTGA 58.019 29.630 0.00 0.00 32.90 2.69
3576 3749 7.742963 GCACAGCAATCAAGAATTTAACATTTG 59.257 33.333 0.00 0.00 0.00 2.32
3577 3750 7.359431 CGCACAGCAATCAAGAATTTAACATTT 60.359 33.333 0.00 0.00 0.00 2.32
3578 3751 6.089820 CGCACAGCAATCAAGAATTTAACATT 59.910 34.615 0.00 0.00 0.00 2.71
3579 3752 5.574055 CGCACAGCAATCAAGAATTTAACAT 59.426 36.000 0.00 0.00 0.00 2.71
3580 3753 4.916831 CGCACAGCAATCAAGAATTTAACA 59.083 37.500 0.00 0.00 0.00 2.41
3581 3754 4.917415 ACGCACAGCAATCAAGAATTTAAC 59.083 37.500 0.00 0.00 0.00 2.01
3582 3755 4.916831 CACGCACAGCAATCAAGAATTTAA 59.083 37.500 0.00 0.00 0.00 1.52
3583 3756 4.475028 CACGCACAGCAATCAAGAATTTA 58.525 39.130 0.00 0.00 0.00 1.40
3584 3757 3.311106 CACGCACAGCAATCAAGAATTT 58.689 40.909 0.00 0.00 0.00 1.82
3585 3758 2.923605 GCACGCACAGCAATCAAGAATT 60.924 45.455 0.00 0.00 0.00 2.17
3586 3759 1.401931 GCACGCACAGCAATCAAGAAT 60.402 47.619 0.00 0.00 0.00 2.40
3587 3760 0.040157 GCACGCACAGCAATCAAGAA 60.040 50.000 0.00 0.00 0.00 2.52
3588 3761 0.886043 AGCACGCACAGCAATCAAGA 60.886 50.000 0.00 0.00 0.00 3.02
3589 3762 0.798159 TAGCACGCACAGCAATCAAG 59.202 50.000 0.00 0.00 0.00 3.02
3590 3763 1.069296 GTTAGCACGCACAGCAATCAA 60.069 47.619 0.00 0.00 0.00 2.57
3591 3764 0.516877 GTTAGCACGCACAGCAATCA 59.483 50.000 0.00 0.00 0.00 2.57
3592 3765 0.798776 AGTTAGCACGCACAGCAATC 59.201 50.000 0.00 0.00 0.00 2.67
3593 3766 0.518636 CAGTTAGCACGCACAGCAAT 59.481 50.000 0.00 0.00 0.00 3.56
3594 3767 1.941072 CAGTTAGCACGCACAGCAA 59.059 52.632 0.00 0.00 0.00 3.91
3595 3768 2.606961 GCAGTTAGCACGCACAGCA 61.607 57.895 0.00 0.00 44.79 4.41
3596 3769 2.174349 GCAGTTAGCACGCACAGC 59.826 61.111 0.00 0.00 44.79 4.40
3605 3778 8.545229 ACATATTCAGATGATAAGCAGTTAGC 57.455 34.615 0.00 0.00 46.19 3.09
3608 3781 8.944029 GCATACATATTCAGATGATAAGCAGTT 58.056 33.333 0.00 0.00 0.00 3.16
3609 3782 7.551974 GGCATACATATTCAGATGATAAGCAGT 59.448 37.037 0.00 0.00 0.00 4.40
3610 3783 7.012138 GGGCATACATATTCAGATGATAAGCAG 59.988 40.741 0.00 0.00 0.00 4.24
3611 3784 6.825213 GGGCATACATATTCAGATGATAAGCA 59.175 38.462 0.00 0.00 0.00 3.91
3612 3785 6.825213 TGGGCATACATATTCAGATGATAAGC 59.175 38.462 0.00 0.00 0.00 3.09
3613 3786 8.671921 GTTGGGCATACATATTCAGATGATAAG 58.328 37.037 0.00 0.00 0.00 1.73
3614 3787 8.385491 AGTTGGGCATACATATTCAGATGATAA 58.615 33.333 0.00 0.00 0.00 1.75
3615 3788 7.921304 AGTTGGGCATACATATTCAGATGATA 58.079 34.615 0.00 0.00 0.00 2.15
3616 3789 6.787170 AGTTGGGCATACATATTCAGATGAT 58.213 36.000 0.00 0.00 0.00 2.45
3617 3790 6.191657 AGTTGGGCATACATATTCAGATGA 57.808 37.500 0.00 0.00 0.00 2.92
3618 3791 6.889301 AAGTTGGGCATACATATTCAGATG 57.111 37.500 0.00 0.00 0.00 2.90
3619 3792 8.220559 AGTAAAGTTGGGCATACATATTCAGAT 58.779 33.333 0.00 0.00 0.00 2.90
3620 3793 7.573710 AGTAAAGTTGGGCATACATATTCAGA 58.426 34.615 0.00 0.00 0.00 3.27
3621 3794 7.307396 CGAGTAAAGTTGGGCATACATATTCAG 60.307 40.741 0.00 0.00 0.00 3.02
3622 3795 6.481976 CGAGTAAAGTTGGGCATACATATTCA 59.518 38.462 0.00 0.00 0.00 2.57
3623 3796 6.565999 GCGAGTAAAGTTGGGCATACATATTC 60.566 42.308 0.00 0.00 0.00 1.75
3624 3797 5.238650 GCGAGTAAAGTTGGGCATACATATT 59.761 40.000 0.00 0.00 0.00 1.28
3625 3798 4.755123 GCGAGTAAAGTTGGGCATACATAT 59.245 41.667 0.00 0.00 0.00 1.78
3626 3799 4.124238 GCGAGTAAAGTTGGGCATACATA 58.876 43.478 0.00 0.00 0.00 2.29
3627 3800 2.943033 GCGAGTAAAGTTGGGCATACAT 59.057 45.455 0.00 0.00 0.00 2.29
3628 3801 2.352388 GCGAGTAAAGTTGGGCATACA 58.648 47.619 0.00 0.00 0.00 2.29
3629 3802 1.669265 GGCGAGTAAAGTTGGGCATAC 59.331 52.381 0.00 0.00 0.00 2.39
3630 3803 1.407712 GGGCGAGTAAAGTTGGGCATA 60.408 52.381 0.00 0.00 0.00 3.14
3631 3804 0.679960 GGGCGAGTAAAGTTGGGCAT 60.680 55.000 0.00 0.00 0.00 4.40
3632 3805 1.302993 GGGCGAGTAAAGTTGGGCA 60.303 57.895 0.00 0.00 0.00 5.36
3633 3806 0.251073 TAGGGCGAGTAAAGTTGGGC 59.749 55.000 0.00 0.00 0.00 5.36
3634 3807 1.553704 AGTAGGGCGAGTAAAGTTGGG 59.446 52.381 0.00 0.00 0.00 4.12
3635 3808 2.618053 CAGTAGGGCGAGTAAAGTTGG 58.382 52.381 0.00 0.00 0.00 3.77
3636 3809 2.000447 GCAGTAGGGCGAGTAAAGTTG 59.000 52.381 0.00 0.00 0.00 3.16
3637 3810 1.900486 AGCAGTAGGGCGAGTAAAGTT 59.100 47.619 0.00 0.00 39.27 2.66
3638 3811 1.558233 AGCAGTAGGGCGAGTAAAGT 58.442 50.000 0.00 0.00 39.27 2.66
3639 3812 2.094182 TCAAGCAGTAGGGCGAGTAAAG 60.094 50.000 0.00 0.00 39.27 1.85
3640 3813 1.897133 TCAAGCAGTAGGGCGAGTAAA 59.103 47.619 0.00 0.00 39.27 2.01
3641 3814 1.476891 CTCAAGCAGTAGGGCGAGTAA 59.523 52.381 0.00 0.00 39.27 2.24
3642 3815 1.103803 CTCAAGCAGTAGGGCGAGTA 58.896 55.000 0.00 0.00 39.27 2.59
3643 3816 1.608717 CCTCAAGCAGTAGGGCGAGT 61.609 60.000 0.00 0.00 39.27 4.18
3644 3817 1.142748 CCTCAAGCAGTAGGGCGAG 59.857 63.158 0.00 0.00 39.27 5.03
3645 3818 2.359169 CCCTCAAGCAGTAGGGCGA 61.359 63.158 4.53 0.00 45.91 5.54
3646 3819 2.187946 CCCTCAAGCAGTAGGGCG 59.812 66.667 4.53 0.00 45.91 6.13
3649 3822 5.303971 CAATTAGATCCCTCAAGCAGTAGG 58.696 45.833 0.00 0.00 0.00 3.18
3650 3823 4.754114 GCAATTAGATCCCTCAAGCAGTAG 59.246 45.833 0.00 0.00 0.00 2.57
3651 3824 4.410228 AGCAATTAGATCCCTCAAGCAGTA 59.590 41.667 0.00 0.00 0.00 2.74
3652 3825 3.201708 AGCAATTAGATCCCTCAAGCAGT 59.798 43.478 0.00 0.00 0.00 4.40
3653 3826 3.818180 AGCAATTAGATCCCTCAAGCAG 58.182 45.455 0.00 0.00 0.00 4.24
3654 3827 3.939740 AGCAATTAGATCCCTCAAGCA 57.060 42.857 0.00 0.00 0.00 3.91
3655 3828 6.890979 ATAAAGCAATTAGATCCCTCAAGC 57.109 37.500 0.00 0.00 0.00 4.01
3656 3829 7.286316 ACCAATAAAGCAATTAGATCCCTCAAG 59.714 37.037 0.00 0.00 0.00 3.02
3657 3830 7.125391 ACCAATAAAGCAATTAGATCCCTCAA 58.875 34.615 0.00 0.00 0.00 3.02
3658 3831 6.672593 ACCAATAAAGCAATTAGATCCCTCA 58.327 36.000 0.00 0.00 0.00 3.86
3659 3832 8.870075 ATACCAATAAAGCAATTAGATCCCTC 57.130 34.615 0.00 0.00 0.00 4.30
3660 3833 9.082313 CAATACCAATAAAGCAATTAGATCCCT 57.918 33.333 0.00 0.00 0.00 4.20
3661 3834 7.814587 GCAATACCAATAAAGCAATTAGATCCC 59.185 37.037 0.00 0.00 0.00 3.85
3662 3835 8.579863 AGCAATACCAATAAAGCAATTAGATCC 58.420 33.333 0.00 0.00 0.00 3.36
3663 3836 9.617975 GAGCAATACCAATAAAGCAATTAGATC 57.382 33.333 0.00 0.00 0.00 2.75
3664 3837 9.359653 AGAGCAATACCAATAAAGCAATTAGAT 57.640 29.630 0.00 0.00 0.00 1.98
3665 3838 8.752005 AGAGCAATACCAATAAAGCAATTAGA 57.248 30.769 0.00 0.00 0.00 2.10
3666 3839 9.884465 GTAGAGCAATACCAATAAAGCAATTAG 57.116 33.333 0.00 0.00 0.00 1.73
3667 3840 9.402320 TGTAGAGCAATACCAATAAAGCAATTA 57.598 29.630 0.00 0.00 0.00 1.40
3668 3841 8.292444 TGTAGAGCAATACCAATAAAGCAATT 57.708 30.769 0.00 0.00 0.00 2.32
3669 3842 7.880160 TGTAGAGCAATACCAATAAAGCAAT 57.120 32.000 0.00 0.00 0.00 3.56
3670 3843 7.393234 AGTTGTAGAGCAATACCAATAAAGCAA 59.607 33.333 0.00 0.00 39.55 3.91
3671 3844 6.884295 AGTTGTAGAGCAATACCAATAAAGCA 59.116 34.615 0.00 0.00 39.55 3.91
3672 3845 7.321745 AGTTGTAGAGCAATACCAATAAAGC 57.678 36.000 0.00 0.00 39.55 3.51
3673 3846 8.730680 ACAAGTTGTAGAGCAATACCAATAAAG 58.269 33.333 6.75 0.00 39.55 1.85
3674 3847 8.511321 CACAAGTTGTAGAGCAATACCAATAAA 58.489 33.333 8.49 0.00 39.55 1.40
3675 3848 7.880713 TCACAAGTTGTAGAGCAATACCAATAA 59.119 33.333 8.49 0.00 39.55 1.40
3676 3849 7.390823 TCACAAGTTGTAGAGCAATACCAATA 58.609 34.615 8.49 0.00 39.55 1.90
3677 3850 6.237901 TCACAAGTTGTAGAGCAATACCAAT 58.762 36.000 8.49 0.00 39.55 3.16
3678 3851 5.616270 TCACAAGTTGTAGAGCAATACCAA 58.384 37.500 8.49 0.00 39.55 3.67
3679 3852 5.222079 TCACAAGTTGTAGAGCAATACCA 57.778 39.130 8.49 0.00 39.55 3.25
3680 3853 6.371548 TCATTCACAAGTTGTAGAGCAATACC 59.628 38.462 8.49 0.00 39.55 2.73
3681 3854 7.364522 TCATTCACAAGTTGTAGAGCAATAC 57.635 36.000 8.49 0.00 39.55 1.89
3682 3855 7.361201 GCTTCATTCACAAGTTGTAGAGCAATA 60.361 37.037 8.49 0.00 39.55 1.90
3683 3856 6.569226 GCTTCATTCACAAGTTGTAGAGCAAT 60.569 38.462 8.49 0.06 39.55 3.56
3684 3857 5.277974 GCTTCATTCACAAGTTGTAGAGCAA 60.278 40.000 8.49 0.00 34.16 3.91
3685 3858 4.214119 GCTTCATTCACAAGTTGTAGAGCA 59.786 41.667 8.49 0.00 0.00 4.26
3686 3859 4.453819 AGCTTCATTCACAAGTTGTAGAGC 59.546 41.667 8.49 11.18 0.00 4.09
3687 3860 6.551385 AAGCTTCATTCACAAGTTGTAGAG 57.449 37.500 8.49 0.00 0.00 2.43
3688 3861 7.497579 TGTTAAGCTTCATTCACAAGTTGTAGA 59.502 33.333 8.49 6.15 0.00 2.59
3689 3862 7.639039 TGTTAAGCTTCATTCACAAGTTGTAG 58.361 34.615 8.49 2.47 0.00 2.74
3690 3863 7.561021 TGTTAAGCTTCATTCACAAGTTGTA 57.439 32.000 8.49 0.00 0.00 2.41
3691 3864 6.449635 TGTTAAGCTTCATTCACAAGTTGT 57.550 33.333 0.00 1.64 0.00 3.32
3692 3865 6.583806 GGATGTTAAGCTTCATTCACAAGTTG 59.416 38.462 0.00 0.00 0.00 3.16
3693 3866 6.265196 TGGATGTTAAGCTTCATTCACAAGTT 59.735 34.615 0.00 0.00 0.00 2.66
3694 3867 5.769662 TGGATGTTAAGCTTCATTCACAAGT 59.230 36.000 0.00 0.00 0.00 3.16
3695 3868 6.072286 AGTGGATGTTAAGCTTCATTCACAAG 60.072 38.462 28.34 0.00 46.85 3.16
3696 3869 5.769662 AGTGGATGTTAAGCTTCATTCACAA 59.230 36.000 28.34 6.85 46.85 3.33
3697 3870 5.316167 AGTGGATGTTAAGCTTCATTCACA 58.684 37.500 28.34 15.81 46.85 3.58
3698 3871 5.886960 AGTGGATGTTAAGCTTCATTCAC 57.113 39.130 23.12 23.12 45.60 3.18
3699 3872 8.579850 AATTAGTGGATGTTAAGCTTCATTCA 57.420 30.769 0.00 3.32 0.00 2.57
3700 3873 9.508567 GAAATTAGTGGATGTTAAGCTTCATTC 57.491 33.333 0.00 0.18 0.00 2.67
3701 3874 9.023962 TGAAATTAGTGGATGTTAAGCTTCATT 57.976 29.630 0.00 0.00 0.00 2.57
3702 3875 8.579850 TGAAATTAGTGGATGTTAAGCTTCAT 57.420 30.769 0.00 0.22 0.00 2.57
3703 3876 7.665559 ACTGAAATTAGTGGATGTTAAGCTTCA 59.334 33.333 0.00 0.00 0.00 3.02
3704 3877 8.045176 ACTGAAATTAGTGGATGTTAAGCTTC 57.955 34.615 0.00 0.00 0.00 3.86
3705 3878 8.409358 AACTGAAATTAGTGGATGTTAAGCTT 57.591 30.769 3.48 3.48 0.00 3.74
3706 3879 8.299570 CAAACTGAAATTAGTGGATGTTAAGCT 58.700 33.333 0.00 0.00 0.00 3.74
3707 3880 7.542130 CCAAACTGAAATTAGTGGATGTTAAGC 59.458 37.037 0.00 0.00 0.00 3.09
3708 3881 8.792633 TCCAAACTGAAATTAGTGGATGTTAAG 58.207 33.333 0.00 0.00 0.00 1.85
3709 3882 8.573035 GTCCAAACTGAAATTAGTGGATGTTAA 58.427 33.333 0.00 0.00 28.98 2.01
3710 3883 7.721842 TGTCCAAACTGAAATTAGTGGATGTTA 59.278 33.333 0.00 0.00 28.98 2.41
3711 3884 6.549364 TGTCCAAACTGAAATTAGTGGATGTT 59.451 34.615 0.00 0.00 28.98 2.71
3712 3885 6.068010 TGTCCAAACTGAAATTAGTGGATGT 58.932 36.000 0.00 0.00 28.98 3.06
3713 3886 6.573664 TGTCCAAACTGAAATTAGTGGATG 57.426 37.500 0.00 0.00 28.98 3.51
3714 3887 6.947733 TCATGTCCAAACTGAAATTAGTGGAT 59.052 34.615 0.00 0.00 28.98 3.41
3715 3888 6.303054 TCATGTCCAAACTGAAATTAGTGGA 58.697 36.000 0.00 0.00 0.00 4.02
3716 3889 6.573664 TCATGTCCAAACTGAAATTAGTGG 57.426 37.500 0.00 0.00 0.00 4.00
3717 3890 9.726232 CATATCATGTCCAAACTGAAATTAGTG 57.274 33.333 0.00 0.00 0.00 2.74
3718 3891 9.685276 TCATATCATGTCCAAACTGAAATTAGT 57.315 29.630 0.00 0.00 0.00 2.24
3724 3897 8.570488 GCATATTCATATCATGTCCAAACTGAA 58.430 33.333 0.00 0.00 0.00 3.02
3725 3898 7.095102 CGCATATTCATATCATGTCCAAACTGA 60.095 37.037 0.00 0.00 0.00 3.41
3726 3899 7.019418 CGCATATTCATATCATGTCCAAACTG 58.981 38.462 0.00 0.00 0.00 3.16
3727 3900 6.712095 ACGCATATTCATATCATGTCCAAACT 59.288 34.615 0.00 0.00 0.00 2.66
3728 3901 6.902341 ACGCATATTCATATCATGTCCAAAC 58.098 36.000 0.00 0.00 0.00 2.93
3729 3902 8.503196 GTTACGCATATTCATATCATGTCCAAA 58.497 33.333 0.00 0.00 0.00 3.28
3730 3903 7.877612 AGTTACGCATATTCATATCATGTCCAA 59.122 33.333 0.00 0.00 0.00 3.53
3731 3904 7.386059 AGTTACGCATATTCATATCATGTCCA 58.614 34.615 0.00 0.00 0.00 4.02
3732 3905 7.834068 AGTTACGCATATTCATATCATGTCC 57.166 36.000 0.00 0.00 0.00 4.02
3890 4063 5.886960 AAACAAATCAGGATCTTTCTCCG 57.113 39.130 0.00 0.00 40.46 4.63
3924 4097 0.400213 CTAGGCCACCAAGTCCACAA 59.600 55.000 5.01 0.00 0.00 3.33
4005 4178 7.466805 TCTTGATTTCATCTGCATTAGAAACG 58.533 34.615 9.00 0.00 39.30 3.60
4278 4451 3.758023 TCTCGGTAAAGGTCACGAACATA 59.242 43.478 0.00 0.00 34.70 2.29
4333 4506 7.497579 ACAGTGCAATTTATATATCGAACCACA 59.502 33.333 0.00 0.00 0.00 4.17
4359 4532 8.477419 AGTTTCCATACAGAAAATCAAGGAAA 57.523 30.769 0.00 0.00 40.45 3.13
4454 4627 6.846325 AGTGAAGTTTGTTAGTACTCAAGC 57.154 37.500 0.00 0.51 0.00 4.01
4526 4699 6.483640 ACGAAGGGAATATTTAGCTGATTCAC 59.516 38.462 0.00 1.53 33.90 3.18
4549 4722 5.484715 TCCCTACCATTTCAGTTTCTAACG 58.515 41.667 0.00 0.00 36.23 3.18
4616 4791 8.445275 TTCAGACTAAAACATGTAAGAGCAAA 57.555 30.769 0.00 0.00 0.00 3.68
4667 4842 0.307760 CGAGCCACAACAAAGTGACC 59.692 55.000 0.00 0.00 42.05 4.02
4707 4882 4.556233 CGACTCTTCCTACAAACATCACA 58.444 43.478 0.00 0.00 0.00 3.58
4850 5025 8.800370 TGCAAGTGGTTCTAACATATATTCAA 57.200 30.769 0.00 0.00 0.00 2.69
4942 5117 9.471742 CTAGAAACCAAAACAAAACAAAAATCG 57.528 29.630 0.00 0.00 0.00 3.34
5064 5239 0.399091 TCCAGAGGATCAAGGGCGAT 60.399 55.000 0.00 0.00 37.82 4.58
5354 5529 1.069204 GAGCTTGATGCCGGACTCATA 59.931 52.381 5.05 0.00 44.23 2.15
5569 5746 7.551262 TGTGACAGTGTTATTGTTCAGTAACTT 59.449 33.333 15.41 5.45 36.51 2.66
5616 5793 5.821204 CCGAAATCTCATTTGGGTCAATAC 58.179 41.667 2.67 0.00 41.50 1.89
5700 5877 5.705609 AACTGCGACACTTATTTTGGATT 57.294 34.783 0.00 0.00 0.00 3.01
5759 5936 6.068670 TCTCTCCGATCCATAATAAGTGTCA 58.931 40.000 0.00 0.00 0.00 3.58
5866 6045 8.849236 AGCAAAGCTTTTCATTGGCTTGTAAAG 61.849 37.037 9.53 12.36 44.17 1.85
5877 6056 7.436118 TGTTGAGAATAGCAAAGCTTTTCATT 58.564 30.769 9.53 8.97 44.73 2.57
5885 6064 7.475015 TGACATAATGTTGAGAATAGCAAAGC 58.525 34.615 0.00 0.00 0.00 3.51
6022 6201 7.322664 TGCCAGATTCATCTACAAAATTTTCC 58.677 34.615 0.00 0.00 34.85 3.13
6061 6240 5.565509 TGCATAAAACCTTGTCTCATGGTA 58.434 37.500 7.54 0.00 40.31 3.25
6069 6248 6.981559 TGGTAAAAACTGCATAAAACCTTGTC 59.018 34.615 0.00 0.00 0.00 3.18
6132 6327 4.016444 CCAACCTGCATTACATTACCACT 58.984 43.478 0.00 0.00 0.00 4.00
6336 6531 6.423604 GCAATGCTTACTAACAAACACCAAAT 59.576 34.615 0.00 0.00 0.00 2.32
6371 6566 5.130975 ACAGGTATGATGCTAATCTTCCACA 59.869 40.000 0.00 0.00 33.61 4.17
6421 6616 1.805254 CCACTGCTATGCCTGCAAC 59.195 57.895 0.00 0.00 40.13 4.17
6834 7031 4.454504 CGGCTATAATCATGTAAACCACCC 59.545 45.833 0.00 0.00 0.00 4.61
6927 7125 2.086054 ACAAGCGCTTAACCTGAGAG 57.914 50.000 24.55 9.61 0.00 3.20
6949 7147 3.423539 TGAACCAAAGACATCCTCCTG 57.576 47.619 0.00 0.00 0.00 3.86
7463 7665 4.039603 AGGAAAGCAACTTTATGGCTCT 57.960 40.909 0.00 0.00 36.76 4.09
7516 7718 9.643693 AATAATTTTTGCACATAAAGAGTCAGG 57.356 29.630 0.00 0.00 0.00 3.86
7536 7738 9.914834 TCTGGGTAGTATTTTGCACTAATAATT 57.085 29.630 6.16 0.00 30.54 1.40
7601 7803 5.286082 GCGACAATACTTTGCCATGTAAAAG 59.714 40.000 13.18 13.18 38.95 2.27
7629 7831 7.901029 TGCATCCCTTTTTGAACATTTGTATA 58.099 30.769 0.00 0.00 0.00 1.47
7644 7846 3.453353 CCATCCTTCAAATGCATCCCTTT 59.547 43.478 0.00 0.00 0.00 3.11
7659 7861 0.326264 GTGAGCCAGTGTCCATCCTT 59.674 55.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.