Multiple sequence alignment - TraesCS5B01G132500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G132500 chr5B 100.000 4724 0 0 1 4724 247065387 247060664 0.000000e+00 8724.0
1 TraesCS5B01G132500 chr5D 97.431 3153 65 7 637 3781 224312933 224316077 0.000000e+00 5360.0
2 TraesCS5B01G132500 chr5D 95.000 340 14 2 1 337 224312289 224312628 9.000000e-147 531.0
3 TraesCS5B01G132500 chr5D 89.474 342 27 5 3789 4125 224320878 224321215 1.570000e-114 424.0
4 TraesCS5B01G132500 chr5D 93.023 258 9 3 393 641 224312630 224312887 7.470000e-98 368.0
5 TraesCS5B01G132500 chr5D 94.709 189 7 3 4376 4563 224321831 224322017 1.660000e-74 291.0
6 TraesCS5B01G132500 chr5D 98.658 149 2 0 4576 4724 224325234 224325382 1.010000e-66 265.0
7 TraesCS5B01G132500 chr5D 94.068 118 7 0 4162 4279 224321215 224321332 3.760000e-41 180.0
8 TraesCS5B01G132500 chr5D 76.172 256 55 6 1232 1484 224314563 224314815 3.840000e-26 130.0
9 TraesCS5B01G132500 chr5D 74.030 335 69 11 1116 1447 224315539 224315858 2.310000e-23 121.0
10 TraesCS5B01G132500 chr5A 96.517 3158 91 9 631 3781 299059130 299062275 0.000000e+00 5204.0
11 TraesCS5B01G132500 chr5A 94.318 352 11 6 4376 4724 299065462 299065807 9.000000e-147 531.0
12 TraesCS5B01G132500 chr5A 91.333 300 19 4 3948 4246 299065014 299065307 2.050000e-108 403.0
13 TraesCS5B01G132500 chr5A 92.029 138 4 4 4237 4369 299065348 299065483 2.240000e-43 187.0
14 TraesCS5B01G132500 chr5A 92.857 126 7 1 3793 3918 299064891 299065014 1.040000e-41 182.0
15 TraesCS5B01G132500 chr5A 80.417 240 33 11 3966 4197 689612575 689612342 2.260000e-38 171.0
16 TraesCS5B01G132500 chr5A 74.587 303 69 7 1232 1530 299060761 299061059 4.960000e-25 126.0
17 TraesCS5B01G132500 chr5A 93.243 74 3 1 562 635 299058779 299058850 1.800000e-19 108.0
18 TraesCS5B01G132500 chr5A 86.441 59 8 0 3386 3444 705146776 705146834 1.100000e-06 65.8
19 TraesCS5B01G132500 chr2D 94.078 743 34 5 2475 3214 61752082 61752817 0.000000e+00 1120.0
20 TraesCS5B01G132500 chr2D 93.436 259 14 1 1952 2210 61750965 61751220 9.590000e-102 381.0
21 TraesCS5B01G132500 chr2D 96.098 205 7 1 1620 1824 61750748 61750951 2.720000e-87 333.0
22 TraesCS5B01G132500 chr2D 92.683 41 3 0 391 431 407968011 407967971 5.110000e-05 60.2
23 TraesCS5B01G132500 chr2B 92.443 397 30 0 2257 2653 759180596 759180992 6.860000e-158 568.0
24 TraesCS5B01G132500 chr2B 93.617 376 21 2 2649 3021 759183113 759183488 4.130000e-155 558.0
25 TraesCS5B01G132500 chr2B 88.647 414 27 13 3449 3843 759189578 759189990 1.980000e-133 486.0
26 TraesCS5B01G132500 chr2B 87.893 413 17 10 3020 3409 759189182 759189584 5.570000e-124 455.0
27 TraesCS5B01G132500 chr2B 82.105 190 21 10 3967 4148 305325364 305325548 2.940000e-32 150.0
28 TraesCS5B01G132500 chr2B 87.324 71 9 0 391 461 483456661 483456591 1.090000e-11 82.4
29 TraesCS5B01G132500 chr2A 94.034 352 17 3 1317 1667 62092874 62093222 9.000000e-147 531.0
30 TraesCS5B01G132500 chr2A 84.134 479 33 20 2824 3289 62094341 62094789 1.570000e-114 424.0
31 TraesCS5B01G132500 chr2A 93.333 120 8 0 1092 1211 62094713 62094832 1.350000e-40 178.0
32 TraesCS5B01G132500 chr2A 93.750 80 4 1 1657 1735 62094194 62094273 8.300000e-23 119.0
33 TraesCS5B01G132500 chr2A 96.970 33 1 0 2764 2796 62094308 62094340 6.600000e-04 56.5
34 TraesCS5B01G132500 chr3D 82.160 213 27 7 3960 4164 81373506 81373715 6.280000e-39 172.0
35 TraesCS5B01G132500 chr3A 80.252 238 36 9 3966 4197 646844714 646844482 8.130000e-38 169.0
36 TraesCS5B01G132500 chr4B 79.668 241 35 12 3966 4197 48905130 48904895 1.360000e-35 161.0
37 TraesCS5B01G132500 chr3B 81.579 190 21 12 3999 4181 565265007 565265189 1.370000e-30 145.0
38 TraesCS5B01G132500 chr3B 82.353 68 10 2 391 457 83913358 83913292 1.840000e-04 58.4
39 TraesCS5B01G132500 chr4A 78.475 223 37 10 3966 4181 568617518 568617736 8.250000e-28 135.0
40 TraesCS5B01G132500 chr4A 89.655 58 6 0 391 448 1071654 1071711 1.820000e-09 75.0
41 TraesCS5B01G132500 chr4A 94.286 35 1 1 522 555 620490086 620490052 9.000000e-03 52.8
42 TraesCS5B01G132500 chr7B 74.006 327 59 15 2159 2478 145528315 145528008 5.000000e-20 110.0
43 TraesCS5B01G132500 chr6A 76.961 204 39 6 3386 3585 585973591 585973790 5.000000e-20 110.0
44 TraesCS5B01G132500 chr6A 82.222 90 16 0 1234 1323 592478438 592478349 1.410000e-10 78.7
45 TraesCS5B01G132500 chr6A 73.362 229 52 8 1118 1346 592495107 592494888 5.070000e-10 76.8
46 TraesCS5B01G132500 chr7D 82.000 100 15 3 3346 3444 80713523 80713426 1.090000e-11 82.4
47 TraesCS5B01G132500 chr4D 82.796 93 13 3 391 482 735871 735961 3.920000e-11 80.5
48 TraesCS5B01G132500 chr4D 80.000 95 14 4 391 482 479313212 479313304 1.100000e-06 65.8
49 TraesCS5B01G132500 chr7A 84.146 82 9 3 3380 3457 58235675 58235756 5.070000e-10 76.8
50 TraesCS5B01G132500 chr7A 72.527 273 59 12 3346 3606 83292052 83291784 1.820000e-09 75.0
51 TraesCS5B01G132500 chr6B 81.111 90 17 0 1234 1323 672507832 672507743 6.560000e-09 73.1
52 TraesCS5B01G132500 chr6D 95.455 44 2 0 1280 1323 445799865 445799822 2.360000e-08 71.3
53 TraesCS5B01G132500 chrUn 81.944 72 13 0 3386 3457 108794459 108794388 1.420000e-05 62.1
54 TraesCS5B01G132500 chr1D 89.583 48 1 4 522 566 285046753 285046799 1.840000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G132500 chr5B 247060664 247065387 4723 True 8724.000000 8724 100.000000 1 4724 1 chr5B.!!$R1 4723
1 TraesCS5B01G132500 chr5D 224312289 224316077 3788 False 1302.000000 5360 87.131200 1 3781 5 chr5D.!!$F1 3780
2 TraesCS5B01G132500 chr5D 224320878 224325382 4504 False 290.000000 424 94.227250 3789 4724 4 chr5D.!!$F2 935
3 TraesCS5B01G132500 chr5A 299058779 299065807 7028 False 963.000000 5204 90.697714 562 4724 7 chr5A.!!$F2 4162
4 TraesCS5B01G132500 chr2D 61750748 61752817 2069 False 611.333333 1120 94.537333 1620 3214 3 chr2D.!!$F1 1594
5 TraesCS5B01G132500 chr2B 759180596 759183488 2892 False 563.000000 568 93.030000 2257 3021 2 chr2B.!!$F2 764
6 TraesCS5B01G132500 chr2B 759189182 759189990 808 False 470.500000 486 88.270000 3020 3843 2 chr2B.!!$F3 823
7 TraesCS5B01G132500 chr2A 62092874 62094832 1958 False 261.700000 531 92.444200 1092 3289 5 chr2A.!!$F1 2197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 341 0.179073 CGATCACTTGGCGGAATCCT 60.179 55.0 0.0 0.0 0.0 3.24 F
468 472 0.616891 GGACCACCTCAACCCGTAAT 59.383 55.0 0.0 0.0 0.0 1.89 F
909 1257 1.243342 CCCAATTTCGCCACTGAGCA 61.243 55.0 0.0 0.0 0.0 4.26 F
2760 6998 1.608717 CGAGCCTCACCTACCAAGCT 61.609 60.0 0.0 0.0 0.0 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2520 4630 1.153881 GCCGACGTAGAGGAACACC 60.154 63.158 8.21 0.00 0.00 4.16 R
3015 7257 2.743928 GACACCTTCCGGCAGCTG 60.744 66.667 10.11 10.11 0.00 4.24 R
3654 7938 1.699656 CCATTGCGCTTCTCAGTCGG 61.700 60.000 9.73 0.00 0.00 4.79 R
3946 10942 0.179067 TTACATCGGGATCCCAACGC 60.179 55.000 30.42 3.02 35.37 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.664916 GATGTGTGGTTTGCATGTGTC 58.335 47.619 0.00 0.00 0.00 3.67
141 145 9.665719 ATGTTTAATTTTGAAGACAACCAAAGT 57.334 25.926 0.00 0.00 35.63 2.66
217 221 4.579869 AGTTCCTACATCATGTGACCAAC 58.420 43.478 0.00 0.00 0.00 3.77
221 225 3.941483 CCTACATCATGTGACCAACCTTC 59.059 47.826 0.00 0.00 0.00 3.46
231 235 0.739813 ACCAACCTTCATAGCGCGAC 60.740 55.000 12.10 0.04 0.00 5.19
239 243 2.202932 ATAGCGCGACTGCCCTTG 60.203 61.111 12.10 0.00 38.08 3.61
259 263 7.540299 CCCTTGTAGAGTTACTCTAAGAACTG 58.460 42.308 21.92 10.30 43.53 3.16
283 287 3.818773 GGCTAGCAACTTCTGTAACCAAA 59.181 43.478 18.24 0.00 0.00 3.28
290 294 5.499047 CAACTTCTGTAACCAAAGACGAAC 58.501 41.667 0.00 0.00 0.00 3.95
337 341 0.179073 CGATCACTTGGCGGAATCCT 60.179 55.000 0.00 0.00 0.00 3.24
338 342 1.068588 CGATCACTTGGCGGAATCCTA 59.931 52.381 0.00 0.00 0.00 2.94
339 343 2.289072 CGATCACTTGGCGGAATCCTAT 60.289 50.000 0.00 0.00 0.00 2.57
340 344 3.744660 GATCACTTGGCGGAATCCTATT 58.255 45.455 0.00 0.00 0.00 1.73
341 345 4.560716 CGATCACTTGGCGGAATCCTATTA 60.561 45.833 0.00 0.00 0.00 0.98
342 346 4.974645 TCACTTGGCGGAATCCTATTAT 57.025 40.909 0.00 0.00 0.00 1.28
343 347 6.620877 ATCACTTGGCGGAATCCTATTATA 57.379 37.500 0.00 0.00 0.00 0.98
344 348 6.428083 TCACTTGGCGGAATCCTATTATAA 57.572 37.500 0.00 0.00 0.00 0.98
345 349 6.228258 TCACTTGGCGGAATCCTATTATAAC 58.772 40.000 0.00 0.00 0.00 1.89
346 350 6.042781 TCACTTGGCGGAATCCTATTATAACT 59.957 38.462 0.00 0.00 0.00 2.24
347 351 7.233962 TCACTTGGCGGAATCCTATTATAACTA 59.766 37.037 0.00 0.00 0.00 2.24
348 352 7.876068 CACTTGGCGGAATCCTATTATAACTAA 59.124 37.037 0.00 0.00 0.00 2.24
349 353 8.095169 ACTTGGCGGAATCCTATTATAACTAAG 58.905 37.037 0.00 0.00 0.00 2.18
350 354 6.403878 TGGCGGAATCCTATTATAACTAAGC 58.596 40.000 0.00 0.00 0.00 3.09
351 355 6.014070 TGGCGGAATCCTATTATAACTAAGCA 60.014 38.462 0.00 0.00 0.00 3.91
352 356 6.313164 GGCGGAATCCTATTATAACTAAGCAC 59.687 42.308 0.00 0.00 0.00 4.40
353 357 7.097834 GCGGAATCCTATTATAACTAAGCACT 58.902 38.462 0.00 0.00 0.00 4.40
354 358 8.248945 GCGGAATCCTATTATAACTAAGCACTA 58.751 37.037 0.00 0.00 0.00 2.74
468 472 0.616891 GGACCACCTCAACCCGTAAT 59.383 55.000 0.00 0.00 0.00 1.89
893 1241 5.398236 TCAAATCTCAATAAAACCACCCCA 58.602 37.500 0.00 0.00 0.00 4.96
895 1243 6.500049 TCAAATCTCAATAAAACCACCCCAAT 59.500 34.615 0.00 0.00 0.00 3.16
909 1257 1.243342 CCCAATTTCGCCACTGAGCA 61.243 55.000 0.00 0.00 0.00 4.26
956 1304 2.101380 GAGCGAGCGTCTGTCTCC 59.899 66.667 0.00 0.00 0.00 3.71
973 1321 3.432588 CGTCCGTCCACGAGCTCT 61.433 66.667 12.85 0.00 42.69 4.09
1770 3105 2.124653 TCCAACACCACCGCGTTT 60.125 55.556 4.92 0.00 0.00 3.60
2328 4356 2.356535 CCTGGCCTTCTTCTACTGCAAT 60.357 50.000 3.32 0.00 0.00 3.56
2331 4359 2.363683 GCCTTCTTCTACTGCAATGCT 58.636 47.619 6.82 0.00 0.00 3.79
2520 4630 3.685214 CTCCCTGCTCGTCGTTCCG 62.685 68.421 0.00 0.00 0.00 4.30
2760 6998 1.608717 CGAGCCTCACCTACCAAGCT 61.609 60.000 0.00 0.00 0.00 3.74
3264 7547 4.801624 TACCTGCTGCTGCTCGCG 62.802 66.667 17.00 0.00 43.27 5.87
3381 7664 2.202756 CTCGCGAGCAACTACCCC 60.203 66.667 25.07 0.00 0.00 4.95
3654 7938 3.612247 ATCCATCGGCATAGCGGGC 62.612 63.158 0.00 0.00 0.00 6.13
3781 8089 2.983192 TCCCATGGACCTTGTTTGTAGA 59.017 45.455 15.22 0.00 0.00 2.59
3782 8090 3.081804 CCCATGGACCTTGTTTGTAGAC 58.918 50.000 15.22 0.00 0.00 2.59
3783 8091 3.497763 CCCATGGACCTTGTTTGTAGACA 60.498 47.826 15.22 0.00 0.00 3.41
3806 10718 9.797556 GACAAACTGTAATTGTTTTAGGACTTT 57.202 29.630 0.00 0.00 40.90 2.66
3843 10755 1.278127 TCTGAACTTCCGTTGGGATCC 59.722 52.381 1.92 1.92 43.41 3.36
3857 10769 1.850345 GGGATCCCAAATGTGGTAGGA 59.150 52.381 26.95 0.00 44.30 2.94
3867 10779 5.163353 CCAAATGTGGTAGGACCTTGTTTTT 60.163 40.000 0.00 0.00 40.42 1.94
4130 11130 7.703197 TGATGACATGCATTAACATTTTGCTAG 59.297 33.333 0.00 0.00 37.34 3.42
4148 11148 9.995003 TTTTGCTAGTCAAATATTTGGTCAAAT 57.005 25.926 24.40 12.71 43.53 2.32
4150 11150 9.638239 TTGCTAGTCAAATATTTGGTCAAATTC 57.362 29.630 24.40 9.73 40.99 2.17
4369 11849 4.615588 GGGAGTATCTCTAGCATGCTTT 57.384 45.455 28.02 4.83 33.73 3.51
4370 11850 4.967036 GGGAGTATCTCTAGCATGCTTTT 58.033 43.478 28.02 3.95 33.73 2.27
4371 11851 5.372373 GGGAGTATCTCTAGCATGCTTTTT 58.628 41.667 28.02 3.51 33.73 1.94
4392 11872 6.620877 TTTTTGAGGGAAGTATCTCTAGCA 57.379 37.500 0.00 0.00 36.16 3.49
4393 11873 6.814954 TTTTGAGGGAAGTATCTCTAGCAT 57.185 37.500 0.00 0.00 36.16 3.79
4394 11874 5.798125 TTGAGGGAAGTATCTCTAGCATG 57.202 43.478 0.00 0.00 36.16 4.06
4395 11875 3.576118 TGAGGGAAGTATCTCTAGCATGC 59.424 47.826 10.51 10.51 36.16 4.06
4396 11876 3.831911 GAGGGAAGTATCTCTAGCATGCT 59.168 47.826 25.99 25.99 36.16 3.79
4397 11877 4.230455 AGGGAAGTATCTCTAGCATGCTT 58.770 43.478 28.02 10.09 33.43 3.91
4532 12013 8.978539 GTTAATTTTGGTAAAAGAAGCTTCTGG 58.021 33.333 29.09 0.00 37.65 3.86
4585 15270 7.790823 TTGGTTTGTAACTAGGTAAACTGAC 57.209 36.000 6.21 0.00 34.40 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 176 6.270000 ACTTAGATTCGTCATATCCCATTCCA 59.730 38.462 0.00 0.00 0.00 3.53
217 221 2.240500 GGCAGTCGCGCTATGAAGG 61.241 63.158 5.56 0.00 39.92 3.46
231 235 5.652891 TCTTAGAGTAACTCTACAAGGGCAG 59.347 44.000 0.00 0.00 41.99 4.85
239 243 5.571277 CCGCAGTTCTTAGAGTAACTCTAC 58.429 45.833 0.00 0.00 41.99 2.59
259 263 1.393883 GTTACAGAAGTTGCTAGCCGC 59.606 52.381 13.29 4.81 39.77 6.53
283 287 6.294065 GGGTATCTCTATCAAATCGTTCGTCT 60.294 42.308 0.00 0.00 0.00 4.18
290 294 3.119955 TCGCGGGTATCTCTATCAAATCG 60.120 47.826 6.13 0.00 0.00 3.34
452 456 2.288666 CATGATTACGGGTTGAGGTGG 58.711 52.381 0.00 0.00 0.00 4.61
463 467 2.599973 GCCTTTTGCAAGCATGATTACG 59.400 45.455 0.00 0.00 40.77 3.18
468 472 2.914695 AAAGCCTTTTGCAAGCATGA 57.085 40.000 11.26 0.00 44.83 3.07
893 1241 0.607489 AGCTGCTCAGTGGCGAAATT 60.607 50.000 0.00 0.00 34.52 1.82
895 1243 1.669115 GAGCTGCTCAGTGGCGAAA 60.669 57.895 24.02 0.00 34.52 3.46
956 1304 3.432588 AGAGCTCGTGGACGGACG 61.433 66.667 8.37 0.00 40.83 4.79
973 1321 0.609957 TCCCGGCGTCTAGAAGTTCA 60.610 55.000 6.01 0.00 0.00 3.18
2520 4630 1.153881 GCCGACGTAGAGGAACACC 60.154 63.158 8.21 0.00 0.00 4.16
3015 7257 2.743928 GACACCTTCCGGCAGCTG 60.744 66.667 10.11 10.11 0.00 4.24
3654 7938 1.699656 CCATTGCGCTTCTCAGTCGG 61.700 60.000 9.73 0.00 0.00 4.79
3760 8044 2.983192 TCTACAAACAAGGTCCATGGGA 59.017 45.455 13.02 0.00 0.00 4.37
3790 8098 8.749354 ACAGAGAACAAAAGTCCTAAAACAATT 58.251 29.630 0.00 0.00 0.00 2.32
3791 8099 8.190784 CACAGAGAACAAAAGTCCTAAAACAAT 58.809 33.333 0.00 0.00 0.00 2.71
3806 10718 6.640518 AGTTCAGAAACTACACAGAGAACAA 58.359 36.000 0.00 0.00 43.98 2.83
3814 10726 4.395959 ACGGAAGTTCAGAAACTACACA 57.604 40.909 10.15 0.00 45.07 3.72
3932 10928 2.943033 CCCAACGCTCGGAATTCTTATT 59.057 45.455 5.23 0.00 0.00 1.40
3934 10930 1.551430 TCCCAACGCTCGGAATTCTTA 59.449 47.619 5.23 0.00 0.00 2.10
3937 10933 0.938008 GATCCCAACGCTCGGAATTC 59.062 55.000 0.00 0.00 0.00 2.17
3939 10935 1.146263 GGATCCCAACGCTCGGAAT 59.854 57.895 0.00 0.00 0.00 3.01
3940 10936 2.582436 GGATCCCAACGCTCGGAA 59.418 61.111 0.00 0.00 0.00 4.30
3942 10938 4.891727 CGGGATCCCAACGCTCGG 62.892 72.222 30.42 7.64 35.37 4.63
3943 10939 3.151958 ATCGGGATCCCAACGCTCG 62.152 63.158 30.42 14.33 35.37 5.03
3945 10941 1.046472 TACATCGGGATCCCAACGCT 61.046 55.000 30.42 10.56 35.37 5.07
3946 10942 0.179067 TTACATCGGGATCCCAACGC 60.179 55.000 30.42 3.02 35.37 4.84
4106 11106 7.549839 ACTAGCAAAATGTTAATGCATGTCAT 58.450 30.769 0.00 2.79 42.45 3.06
4130 11130 9.750125 GGGATAGAATTTGACCAAATATTTGAC 57.250 33.333 26.32 19.39 39.88 3.18
4139 11139 8.657387 TGTATTTTGGGATAGAATTTGACCAA 57.343 30.769 0.00 0.00 36.30 3.67
4142 11142 9.921637 TTGTTGTATTTTGGGATAGAATTTGAC 57.078 29.630 0.00 0.00 0.00 3.18
4148 11148 7.466804 AGTCCTTGTTGTATTTTGGGATAGAA 58.533 34.615 0.00 0.00 0.00 2.10
4150 11150 8.801882 TTAGTCCTTGTTGTATTTTGGGATAG 57.198 34.615 0.00 0.00 0.00 2.08
4154 11154 9.634163 GTTTATTAGTCCTTGTTGTATTTTGGG 57.366 33.333 0.00 0.00 0.00 4.12
4289 11765 9.430623 TCACACTTTGACGATAAATTTCTCATA 57.569 29.630 0.00 0.00 0.00 2.15
4290 11766 8.230486 GTCACACTTTGACGATAAATTTCTCAT 58.770 33.333 0.00 0.00 45.33 2.90
4292 11768 7.994851 GTCACACTTTGACGATAAATTTCTC 57.005 36.000 0.00 0.00 45.33 2.87
4369 11849 6.620877 TGCTAGAGATACTTCCCTCAAAAA 57.379 37.500 0.00 0.00 32.07 1.94
4370 11850 6.586344 CATGCTAGAGATACTTCCCTCAAAA 58.414 40.000 0.00 0.00 32.07 2.44
4371 11851 5.453903 GCATGCTAGAGATACTTCCCTCAAA 60.454 44.000 11.37 0.00 32.07 2.69
4372 11852 4.039730 GCATGCTAGAGATACTTCCCTCAA 59.960 45.833 11.37 0.00 32.07 3.02
4373 11853 3.576118 GCATGCTAGAGATACTTCCCTCA 59.424 47.826 11.37 0.00 32.07 3.86
4374 11854 3.831911 AGCATGCTAGAGATACTTCCCTC 59.168 47.826 21.21 0.00 0.00 4.30
4375 11855 3.855668 AGCATGCTAGAGATACTTCCCT 58.144 45.455 21.21 0.00 0.00 4.20
4376 11856 4.202305 ACAAGCATGCTAGAGATACTTCCC 60.202 45.833 23.00 0.00 0.00 3.97
4377 11857 4.954875 ACAAGCATGCTAGAGATACTTCC 58.045 43.478 23.00 0.00 0.00 3.46
4378 11858 6.644592 CCTAACAAGCATGCTAGAGATACTTC 59.355 42.308 23.00 0.00 28.49 3.01
4379 11859 6.325028 TCCTAACAAGCATGCTAGAGATACTT 59.675 38.462 23.00 7.02 28.49 2.24
4380 11860 5.835819 TCCTAACAAGCATGCTAGAGATACT 59.164 40.000 23.00 0.00 28.49 2.12
4381 11861 5.923684 GTCCTAACAAGCATGCTAGAGATAC 59.076 44.000 23.00 10.54 28.49 2.24
4382 11862 5.835819 AGTCCTAACAAGCATGCTAGAGATA 59.164 40.000 23.00 11.82 28.49 1.98
4383 11863 4.653341 AGTCCTAACAAGCATGCTAGAGAT 59.347 41.667 23.00 11.29 28.49 2.75
4384 11864 4.026744 AGTCCTAACAAGCATGCTAGAGA 58.973 43.478 23.00 10.84 28.49 3.10
4385 11865 4.399004 AGTCCTAACAAGCATGCTAGAG 57.601 45.455 23.00 16.30 28.49 2.43
4386 11866 4.467795 AGAAGTCCTAACAAGCATGCTAGA 59.532 41.667 23.00 8.39 28.49 2.43
4387 11867 4.764172 AGAAGTCCTAACAAGCATGCTAG 58.236 43.478 23.00 14.50 0.00 3.42
4388 11868 4.826274 AGAAGTCCTAACAAGCATGCTA 57.174 40.909 23.00 3.82 0.00 3.49
4389 11869 3.710209 AGAAGTCCTAACAAGCATGCT 57.290 42.857 16.30 16.30 0.00 3.79
4390 11870 5.819901 AGAATAGAAGTCCTAACAAGCATGC 59.180 40.000 10.51 10.51 0.00 4.06
4391 11871 7.271511 AGAGAATAGAAGTCCTAACAAGCATG 58.728 38.462 0.00 0.00 0.00 4.06
4392 11872 7.344352 AGAGAGAATAGAAGTCCTAACAAGCAT 59.656 37.037 0.00 0.00 0.00 3.79
4393 11873 6.665680 AGAGAGAATAGAAGTCCTAACAAGCA 59.334 38.462 0.00 0.00 0.00 3.91
4394 11874 6.978080 CAGAGAGAATAGAAGTCCTAACAAGC 59.022 42.308 0.00 0.00 0.00 4.01
4395 11875 8.062065 ACAGAGAGAATAGAAGTCCTAACAAG 57.938 38.462 0.00 0.00 0.00 3.16
4396 11876 9.179909 CTACAGAGAGAATAGAAGTCCTAACAA 57.820 37.037 0.00 0.00 0.00 2.83
4397 11877 8.330247 ACTACAGAGAGAATAGAAGTCCTAACA 58.670 37.037 0.00 0.00 0.00 2.41
4451 11931 5.714806 TCCCAAAAGAAGTTCAGAAAACTGT 59.285 36.000 5.50 0.00 0.00 3.55
4459 11939 7.543520 GCATTTTAGATCCCAAAAGAAGTTCAG 59.456 37.037 5.50 0.00 0.00 3.02
4563 12044 6.988580 ACTGTCAGTTTACCTAGTTACAAACC 59.011 38.462 0.00 0.00 32.52 3.27
4564 12045 7.707893 TCACTGTCAGTTTACCTAGTTACAAAC 59.292 37.037 1.67 0.00 0.00 2.93
4585 15270 3.894759 AGGGTCAATTCATCCATCACTG 58.105 45.455 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.