Multiple sequence alignment - TraesCS5B01G132100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G132100 chr5B 100.000 4786 0 0 1 4786 246584962 246589747 0.000000e+00 8839.0
1 TraesCS5B01G132100 chr5B 97.889 2984 44 4 1820 4786 235446018 235443037 0.000000e+00 5144.0
2 TraesCS5B01G132100 chr5B 97.606 919 19 2 914 1832 235447853 235446938 0.000000e+00 1572.0
3 TraesCS5B01G132100 chr5B 91.822 538 29 5 391 922 235449269 235448741 0.000000e+00 736.0
4 TraesCS5B01G132100 chr5B 80.899 178 27 7 425 598 36236264 36236438 3.000000e-27 134.0
5 TraesCS5B01G132100 chr5B 83.969 131 13 6 264 389 119130699 119130572 8.410000e-23 119.0
6 TraesCS5B01G132100 chr5D 93.836 3942 154 40 609 4517 224873207 224869322 0.000000e+00 5851.0
7 TraesCS5B01G132100 chr5D 90.741 270 18 3 4518 4786 224869191 224868928 2.120000e-93 353.0
8 TraesCS5B01G132100 chr5D 78.539 219 37 7 425 636 6501940 6501725 8.350000e-28 135.0
9 TraesCS5B01G132100 chr5D 93.750 48 1 2 667 714 224875319 224875274 2.390000e-08 71.3
10 TraesCS5B01G132100 chr5A 95.043 3732 100 31 646 4349 299360706 299357032 0.000000e+00 5788.0
11 TraesCS5B01G132100 chr5A 90.196 255 15 6 4535 4786 299356565 299356318 1.660000e-84 324.0
12 TraesCS5B01G132100 chr5A 93.370 181 12 0 4336 4516 299356884 299356704 7.900000e-68 268.0
13 TraesCS5B01G132100 chr2D 78.215 381 63 16 263 626 335684295 335683918 4.820000e-55 226.0
14 TraesCS5B01G132100 chr2A 83.019 212 33 3 425 636 446066475 446066267 6.320000e-44 189.0
15 TraesCS5B01G132100 chr2A 88.060 134 11 5 263 393 446066654 446066523 2.310000e-33 154.0
16 TraesCS5B01G132100 chr2A 81.564 179 24 8 4532 4709 210043931 210044101 6.460000e-29 139.0
17 TraesCS5B01G132100 chr2A 83.582 134 15 7 263 393 762453732 762453603 8.410000e-23 119.0
18 TraesCS5B01G132100 chr4A 82.524 206 25 5 432 636 64961897 64961702 2.290000e-38 171.0
19 TraesCS5B01G132100 chr2B 83.432 169 23 5 432 598 403696584 403696419 8.300000e-33 152.0
20 TraesCS5B01G132100 chr2B 79.126 206 41 2 433 636 80672018 80671813 1.800000e-29 141.0
21 TraesCS5B01G132100 chr2B 81.356 177 24 5 4532 4707 251194908 251195076 8.350000e-28 135.0
22 TraesCS5B01G132100 chr2B 80.337 178 25 7 4532 4706 54007275 54007445 5.030000e-25 126.0
23 TraesCS5B01G132100 chr6D 83.432 169 20 8 432 598 427167608 427167446 2.980000e-32 150.0
24 TraesCS5B01G132100 chr7D 82.286 175 28 3 465 636 438751629 438751455 1.070000e-31 148.0
25 TraesCS5B01G132100 chr7D 79.310 174 27 7 4542 4711 621173890 621173722 3.910000e-21 113.0
26 TraesCS5B01G132100 chr6B 82.258 186 16 9 4532 4709 632189666 632189490 1.390000e-30 145.0
27 TraesCS5B01G132100 chr3D 81.967 183 20 10 4532 4712 71960425 71960254 4.990000e-30 143.0
28 TraesCS5B01G132100 chr3D 83.871 124 12 7 274 391 45906648 45906527 1.410000e-20 111.0
29 TraesCS5B01G132100 chr4D 86.822 129 9 6 269 393 100576198 100576074 2.320000e-28 137.0
30 TraesCS5B01G132100 chr3B 74.425 391 62 17 269 636 792695715 792695340 3.000000e-27 134.0
31 TraesCS5B01G132100 chr3B 83.478 115 13 4 281 393 46762762 46762652 8.470000e-18 102.0
32 TraesCS5B01G132100 chr1A 85.075 134 16 2 1741 1872 433014549 433014418 3.000000e-27 134.0
33 TraesCS5B01G132100 chr7A 84.848 132 14 6 264 393 372129619 372129492 1.400000e-25 128.0
34 TraesCS5B01G132100 chr7B 83.721 129 11 8 272 392 405062353 405062227 3.910000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G132100 chr5B 246584962 246589747 4785 False 8839.000000 8839 100.000000 1 4786 1 chr5B.!!$F2 4785
1 TraesCS5B01G132100 chr5B 235443037 235449269 6232 True 2484.000000 5144 95.772333 391 4786 3 chr5B.!!$R2 4395
2 TraesCS5B01G132100 chr5D 224868928 224875319 6391 True 2091.766667 5851 92.775667 609 4786 3 chr5D.!!$R2 4177
3 TraesCS5B01G132100 chr5A 299356318 299360706 4388 True 2126.666667 5788 92.869667 646 4786 3 chr5A.!!$R1 4140

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.105039 GTCTCCTCGCCCTATGTTGG 59.895 60.000 0.00 0.0 0.0 3.77 F
384 385 0.111061 TTTGATGTGTGAGGGCTGCT 59.889 50.000 0.00 0.0 0.0 4.24 F
385 386 0.321919 TTGATGTGTGAGGGCTGCTC 60.322 55.000 0.00 0.0 0.0 4.26 F
530 532 0.887933 GAAAATTGAAGCGGGCCTCA 59.112 50.000 0.84 0.0 0.0 3.86 F
636 2140 1.286880 GCACCAAATCGCTGCACTT 59.713 52.632 0.00 0.0 0.0 3.16 F
1641 4053 2.027625 GGGCTACCGCATGATACGC 61.028 63.158 0.00 0.0 38.1 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1005 3417 4.097361 GAGGGAAGGGCGGTGTCC 62.097 72.222 0.00 0.00 0.00 4.02 R
2370 5743 0.040425 ATTCGCTGAACCAAACACGC 60.040 50.000 0.00 0.00 0.00 5.34 R
2541 5914 2.844122 ACTGACTTTGTTTGGTTCGC 57.156 45.000 0.00 0.00 0.00 4.70 R
2590 5963 4.514066 GCAATGGGTTTCCGTAATAGGTAG 59.486 45.833 0.00 0.00 35.24 3.18 R
3695 7072 3.074369 TCGCTCATTGGCCGAGGA 61.074 61.111 7.23 7.23 0.00 3.71 R
4338 7717 0.326927 ACTTAGCCCGCCAAGCTTAA 59.673 50.000 0.00 0.00 41.83 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.364442 TGCCCGATGTTGCCAAAG 58.636 55.556 0.00 0.00 0.00 2.77
19 20 1.212751 GCCCGATGTTGCCAAAGAC 59.787 57.895 0.00 0.00 0.00 3.01
20 21 1.883021 CCCGATGTTGCCAAAGACC 59.117 57.895 0.00 0.00 0.00 3.85
21 22 0.893270 CCCGATGTTGCCAAAGACCA 60.893 55.000 0.00 0.00 0.00 4.02
23 24 1.339610 CCGATGTTGCCAAAGACCAAA 59.660 47.619 0.00 0.00 0.00 3.28
24 25 2.607771 CCGATGTTGCCAAAGACCAAAG 60.608 50.000 0.00 0.00 0.00 2.77
25 26 2.607771 CGATGTTGCCAAAGACCAAAGG 60.608 50.000 0.00 0.00 0.00 3.11
27 28 0.249868 GTTGCCAAAGACCAAAGGCC 60.250 55.000 0.00 0.00 46.45 5.19
28 29 1.406860 TTGCCAAAGACCAAAGGCCC 61.407 55.000 0.00 0.00 46.45 5.80
29 30 2.583441 GCCAAAGACCAAAGGCCCC 61.583 63.158 0.00 0.00 41.25 5.80
30 31 1.913262 CCAAAGACCAAAGGCCCCC 60.913 63.158 0.00 0.00 0.00 5.40
52 53 3.189646 CCCCACCCCCACCTTCAA 61.190 66.667 0.00 0.00 0.00 2.69
53 54 2.117423 CCCACCCCCACCTTCAAC 59.883 66.667 0.00 0.00 0.00 3.18
55 56 2.469765 CCACCCCCACCTTCAACCT 61.470 63.158 0.00 0.00 0.00 3.50
58 59 2.160171 CCCCCACCTTCAACCTCCA 61.160 63.158 0.00 0.00 0.00 3.86
59 60 1.725169 CCCCCACCTTCAACCTCCAA 61.725 60.000 0.00 0.00 0.00 3.53
60 61 0.187361 CCCCACCTTCAACCTCCAAA 59.813 55.000 0.00 0.00 0.00 3.28
61 62 1.203174 CCCCACCTTCAACCTCCAAAT 60.203 52.381 0.00 0.00 0.00 2.32
62 63 1.895131 CCCACCTTCAACCTCCAAATG 59.105 52.381 0.00 0.00 0.00 2.32
63 64 1.895131 CCACCTTCAACCTCCAAATGG 59.105 52.381 0.00 0.00 0.00 3.16
82 83 2.438795 AGACCCTCGTCTCCTCGC 60.439 66.667 0.00 0.00 46.90 5.03
83 84 3.519930 GACCCTCGTCTCCTCGCC 61.520 72.222 0.00 0.00 35.99 5.54
85 86 4.824515 CCCTCGTCTCCTCGCCCT 62.825 72.222 0.00 0.00 0.00 5.19
87 88 1.228306 CCTCGTCTCCTCGCCCTAT 60.228 63.158 0.00 0.00 0.00 2.57
88 89 1.519751 CCTCGTCTCCTCGCCCTATG 61.520 65.000 0.00 0.00 0.00 2.23
89 90 0.820074 CTCGTCTCCTCGCCCTATGT 60.820 60.000 0.00 0.00 0.00 2.29
91 92 0.249073 CGTCTCCTCGCCCTATGTTG 60.249 60.000 0.00 0.00 0.00 3.33
92 93 0.105039 GTCTCCTCGCCCTATGTTGG 59.895 60.000 0.00 0.00 0.00 3.77
93 94 1.227674 CTCCTCGCCCTATGTTGGC 60.228 63.158 0.00 0.00 45.70 4.52
103 104 2.819608 CCCTATGTTGGCAAATATCCGG 59.180 50.000 0.00 0.00 0.00 5.14
104 105 3.486383 CCTATGTTGGCAAATATCCGGT 58.514 45.455 0.00 0.00 0.00 5.28
105 106 3.502211 CCTATGTTGGCAAATATCCGGTC 59.498 47.826 0.00 0.00 0.00 4.79
106 107 1.374560 TGTTGGCAAATATCCGGTCG 58.625 50.000 0.00 0.00 0.00 4.79
107 108 1.339247 TGTTGGCAAATATCCGGTCGT 60.339 47.619 0.00 0.00 0.00 4.34
108 109 1.329599 GTTGGCAAATATCCGGTCGTC 59.670 52.381 0.00 0.00 0.00 4.20
109 110 0.828022 TGGCAAATATCCGGTCGTCT 59.172 50.000 0.00 0.00 0.00 4.18
110 111 1.217882 GGCAAATATCCGGTCGTCTG 58.782 55.000 0.00 0.00 0.00 3.51
111 112 1.217882 GCAAATATCCGGTCGTCTGG 58.782 55.000 0.00 0.47 41.27 3.86
116 117 2.036731 TCCGGTCGTCTGGATGGT 59.963 61.111 6.09 0.00 43.49 3.55
117 118 2.184322 CCGGTCGTCTGGATGGTG 59.816 66.667 0.62 0.00 42.46 4.17
118 119 2.184322 CGGTCGTCTGGATGGTGG 59.816 66.667 0.00 0.00 0.00 4.61
119 120 2.125106 GGTCGTCTGGATGGTGGC 60.125 66.667 0.00 0.00 0.00 5.01
120 121 2.125106 GTCGTCTGGATGGTGGCC 60.125 66.667 0.00 0.00 0.00 5.36
121 122 2.606213 TCGTCTGGATGGTGGCCA 60.606 61.111 0.00 0.00 38.19 5.36
123 124 0.689412 TCGTCTGGATGGTGGCCATA 60.689 55.000 9.72 0.77 45.26 2.74
124 125 0.250038 CGTCTGGATGGTGGCCATAG 60.250 60.000 9.72 1.09 45.26 2.23
125 126 0.536006 GTCTGGATGGTGGCCATAGC 60.536 60.000 9.72 3.81 45.26 2.97
126 127 1.598962 CTGGATGGTGGCCATAGCG 60.599 63.158 9.72 0.00 45.26 4.26
127 128 2.329539 CTGGATGGTGGCCATAGCGT 62.330 60.000 9.72 0.00 45.26 5.07
128 129 1.598130 GGATGGTGGCCATAGCGTC 60.598 63.158 9.72 7.39 45.26 5.19
130 131 0.601311 GATGGTGGCCATAGCGTCTC 60.601 60.000 9.72 0.00 45.26 3.36
132 133 2.494918 GTGGCCATAGCGTCTCGT 59.505 61.111 9.72 0.00 41.24 4.18
133 134 1.878522 GTGGCCATAGCGTCTCGTG 60.879 63.158 9.72 0.00 41.24 4.35
134 135 2.348104 TGGCCATAGCGTCTCGTGT 61.348 57.895 0.00 0.00 41.24 4.49
135 136 1.153628 GGCCATAGCGTCTCGTGTT 60.154 57.895 0.00 0.00 41.24 3.32
136 137 1.421410 GGCCATAGCGTCTCGTGTTG 61.421 60.000 0.00 0.00 41.24 3.33
140 141 2.058798 CATAGCGTCTCGTGTTGTTGT 58.941 47.619 0.00 0.00 0.00 3.32
141 142 1.762419 TAGCGTCTCGTGTTGTTGTC 58.238 50.000 0.00 0.00 0.00 3.18
143 144 1.844003 CGTCTCGTGTTGTTGTCGG 59.156 57.895 0.00 0.00 0.00 4.79
145 146 1.142097 TCTCGTGTTGTTGTCGGCA 59.858 52.632 0.00 0.00 0.00 5.69
147 148 2.052237 CGTGTTGTTGTCGGCAGC 60.052 61.111 0.00 0.00 0.00 5.25
148 149 2.534019 CGTGTTGTTGTCGGCAGCT 61.534 57.895 5.23 0.00 0.00 4.24
149 150 1.727467 GTGTTGTTGTCGGCAGCTT 59.273 52.632 5.23 0.00 0.00 3.74
150 151 0.317020 GTGTTGTTGTCGGCAGCTTC 60.317 55.000 5.23 0.00 0.00 3.86
151 152 0.463654 TGTTGTTGTCGGCAGCTTCT 60.464 50.000 5.23 0.00 0.00 2.85
154 155 2.048222 TTGTCGGCAGCTTCTCGG 60.048 61.111 0.00 0.00 0.00 4.63
155 156 4.742201 TGTCGGCAGCTTCTCGGC 62.742 66.667 0.00 0.00 35.03 5.54
160 161 4.143333 GCAGCTTCTCGGCCCGTA 62.143 66.667 1.63 0.00 0.00 4.02
161 162 2.577059 CAGCTTCTCGGCCCGTAA 59.423 61.111 1.63 0.00 0.00 3.18
162 163 1.519455 CAGCTTCTCGGCCCGTAAG 60.519 63.158 1.63 9.73 0.00 2.34
163 164 2.890961 GCTTCTCGGCCCGTAAGC 60.891 66.667 23.02 23.02 38.67 3.09
174 175 1.690352 GCCCGTAAGCCATCTAGGTTA 59.310 52.381 0.00 0.00 40.61 2.85
175 176 2.547430 GCCCGTAAGCCATCTAGGTTAC 60.547 54.545 4.06 4.06 40.61 2.50
176 177 2.963782 CCCGTAAGCCATCTAGGTTACT 59.036 50.000 10.73 0.00 40.61 2.24
177 178 3.387050 CCCGTAAGCCATCTAGGTTACTT 59.613 47.826 10.73 0.00 40.61 2.24
178 179 4.369182 CCGTAAGCCATCTAGGTTACTTG 58.631 47.826 10.73 0.82 40.61 3.16
179 180 3.802685 CGTAAGCCATCTAGGTTACTTGC 59.197 47.826 10.73 0.00 40.61 4.01
180 181 4.679639 CGTAAGCCATCTAGGTTACTTGCA 60.680 45.833 10.73 0.00 40.61 4.08
182 183 4.510167 AGCCATCTAGGTTACTTGCATT 57.490 40.909 0.00 0.00 40.61 3.56
183 184 4.860022 AGCCATCTAGGTTACTTGCATTT 58.140 39.130 0.00 0.00 40.61 2.32
184 185 4.884164 AGCCATCTAGGTTACTTGCATTTC 59.116 41.667 0.00 0.00 40.61 2.17
185 186 4.640201 GCCATCTAGGTTACTTGCATTTCA 59.360 41.667 0.00 0.00 40.61 2.69
186 187 5.220931 GCCATCTAGGTTACTTGCATTTCAG 60.221 44.000 0.00 0.00 40.61 3.02
188 189 5.755409 TCTAGGTTACTTGCATTTCAGGA 57.245 39.130 0.00 0.00 0.00 3.86
189 190 5.734720 TCTAGGTTACTTGCATTTCAGGAG 58.265 41.667 0.00 0.00 0.00 3.69
190 191 3.690460 AGGTTACTTGCATTTCAGGAGG 58.310 45.455 0.00 0.00 0.00 4.30
191 192 3.330701 AGGTTACTTGCATTTCAGGAGGA 59.669 43.478 0.00 0.00 0.00 3.71
192 193 3.440522 GGTTACTTGCATTTCAGGAGGAC 59.559 47.826 0.00 0.00 0.00 3.85
193 194 2.206576 ACTTGCATTTCAGGAGGACC 57.793 50.000 0.00 0.00 0.00 4.46
230 231 5.586155 TTTATTAGGGTCCTTTGTGTGGA 57.414 39.130 0.00 0.00 0.00 4.02
239 240 4.698201 TCCTTTGTGTGGACTTGTATCA 57.302 40.909 0.00 0.00 0.00 2.15
240 241 4.385825 TCCTTTGTGTGGACTTGTATCAC 58.614 43.478 0.00 0.00 0.00 3.06
244 245 6.371809 TTTGTGTGGACTTGTATCACTTTC 57.628 37.500 0.00 0.00 33.04 2.62
247 248 4.929808 GTGTGGACTTGTATCACTTTCGAT 59.070 41.667 0.00 0.00 33.04 3.59
248 249 6.097356 GTGTGGACTTGTATCACTTTCGATA 58.903 40.000 0.00 0.00 33.04 2.92
249 250 6.588756 GTGTGGACTTGTATCACTTTCGATAA 59.411 38.462 0.00 0.00 33.04 1.75
250 251 7.277981 GTGTGGACTTGTATCACTTTCGATAAT 59.722 37.037 0.00 0.00 33.04 1.28
252 253 9.309516 GTGGACTTGTATCACTTTCGATAATAA 57.690 33.333 0.00 0.00 29.82 1.40
253 254 9.529325 TGGACTTGTATCACTTTCGATAATAAG 57.471 33.333 0.00 0.00 34.10 1.73
254 255 8.979574 GGACTTGTATCACTTTCGATAATAAGG 58.020 37.037 0.07 0.00 33.19 2.69
255 256 9.745880 GACTTGTATCACTTTCGATAATAAGGA 57.254 33.333 0.07 0.00 33.19 3.36
281 282 3.339253 AAATCAATTTTGAGCCCAGGC 57.661 42.857 0.00 0.00 41.08 4.85
282 283 3.328637 AAAATCAATTTTGAGCCCAGGCT 59.671 39.130 11.93 11.93 42.13 4.58
291 292 2.827642 GCCCAGGCTCATCTGCAC 60.828 66.667 0.08 0.00 38.26 4.57
292 293 2.124403 CCCAGGCTCATCTGCACC 60.124 66.667 0.00 0.00 33.64 5.01
294 295 2.513204 CAGGCTCATCTGCACCCG 60.513 66.667 0.00 0.00 34.04 5.28
295 296 4.479993 AGGCTCATCTGCACCCGC 62.480 66.667 0.00 0.00 39.24 6.13
298 299 2.107750 CTCATCTGCACCCGCGAT 59.892 61.111 8.23 0.00 42.97 4.58
299 300 2.202919 TCATCTGCACCCGCGATG 60.203 61.111 8.23 6.86 43.92 3.84
300 301 3.274586 CATCTGCACCCGCGATGG 61.275 66.667 8.23 3.02 41.40 3.51
301 302 3.469970 ATCTGCACCCGCGATGGA 61.470 61.111 8.23 5.95 42.97 3.41
305 306 2.435938 GCACCCGCGATGGAGAAA 60.436 61.111 8.23 0.00 42.00 2.52
306 307 2.038269 GCACCCGCGATGGAGAAAA 61.038 57.895 8.23 0.00 42.00 2.29
307 308 1.582610 GCACCCGCGATGGAGAAAAA 61.583 55.000 8.23 0.00 42.00 1.94
373 374 8.929827 TTTTGCATGGTAGATAATTTGATGTG 57.070 30.769 0.00 0.00 0.00 3.21
374 375 7.643569 TTGCATGGTAGATAATTTGATGTGT 57.356 32.000 0.00 0.00 0.00 3.72
376 377 6.827762 TGCATGGTAGATAATTTGATGTGTGA 59.172 34.615 0.00 0.00 0.00 3.58
377 378 7.012610 TGCATGGTAGATAATTTGATGTGTGAG 59.987 37.037 0.00 0.00 0.00 3.51
378 379 7.521099 GCATGGTAGATAATTTGATGTGTGAGG 60.521 40.741 0.00 0.00 0.00 3.86
379 380 6.356556 TGGTAGATAATTTGATGTGTGAGGG 58.643 40.000 0.00 0.00 0.00 4.30
380 381 5.239525 GGTAGATAATTTGATGTGTGAGGGC 59.760 44.000 0.00 0.00 0.00 5.19
381 382 5.121380 AGATAATTTGATGTGTGAGGGCT 57.879 39.130 0.00 0.00 0.00 5.19
382 383 4.885907 AGATAATTTGATGTGTGAGGGCTG 59.114 41.667 0.00 0.00 0.00 4.85
383 384 1.180029 ATTTGATGTGTGAGGGCTGC 58.820 50.000 0.00 0.00 0.00 5.25
384 385 0.111061 TTTGATGTGTGAGGGCTGCT 59.889 50.000 0.00 0.00 0.00 4.24
385 386 0.321919 TTGATGTGTGAGGGCTGCTC 60.322 55.000 0.00 0.00 0.00 4.26
387 388 2.189191 GATGTGTGAGGGCTGCTCCA 62.189 60.000 0.00 0.00 36.21 3.86
389 390 1.001641 GTGTGAGGGCTGCTCCAAT 60.002 57.895 0.00 0.00 36.21 3.16
461 462 5.548406 ACTTTACTGGTCATGTACTGTTCC 58.452 41.667 0.00 0.00 0.00 3.62
463 464 1.968493 ACTGGTCATGTACTGTTCCGT 59.032 47.619 0.00 0.21 0.00 4.69
464 465 2.029290 ACTGGTCATGTACTGTTCCGTC 60.029 50.000 0.00 0.00 0.00 4.79
480 481 2.550606 TCCGTCCCGATTTGTCTTTTTG 59.449 45.455 0.00 0.00 0.00 2.44
481 482 2.315901 CGTCCCGATTTGTCTTTTTGC 58.684 47.619 0.00 0.00 0.00 3.68
482 483 2.031157 CGTCCCGATTTGTCTTTTTGCT 60.031 45.455 0.00 0.00 0.00 3.91
483 484 3.308530 GTCCCGATTTGTCTTTTTGCTG 58.691 45.455 0.00 0.00 0.00 4.41
484 485 3.004315 GTCCCGATTTGTCTTTTTGCTGA 59.996 43.478 0.00 0.00 0.00 4.26
485 486 3.253188 TCCCGATTTGTCTTTTTGCTGAG 59.747 43.478 0.00 0.00 0.00 3.35
486 487 3.253188 CCCGATTTGTCTTTTTGCTGAGA 59.747 43.478 0.00 0.00 0.00 3.27
487 488 4.470462 CCGATTTGTCTTTTTGCTGAGAG 58.530 43.478 0.00 0.00 0.00 3.20
488 489 3.910767 CGATTTGTCTTTTTGCTGAGAGC 59.089 43.478 0.00 0.00 42.82 4.09
493 495 4.310769 TGTCTTTTTGCTGAGAGCTACTC 58.689 43.478 6.31 6.31 42.97 2.59
530 532 0.887933 GAAAATTGAAGCGGGCCTCA 59.112 50.000 0.84 0.00 0.00 3.86
636 2140 1.286880 GCACCAAATCGCTGCACTT 59.713 52.632 0.00 0.00 0.00 3.16
662 2166 2.374170 ACAAGTCCCTTCCCGTGTTAAT 59.626 45.455 0.00 0.00 0.00 1.40
663 2167 3.181437 ACAAGTCCCTTCCCGTGTTAATT 60.181 43.478 0.00 0.00 0.00 1.40
664 2168 4.041938 ACAAGTCCCTTCCCGTGTTAATTA 59.958 41.667 0.00 0.00 0.00 1.40
665 2169 4.914177 AGTCCCTTCCCGTGTTAATTAA 57.086 40.909 0.00 0.00 0.00 1.40
762 2266 4.436998 GGTGCTCACGTCTCCGGG 62.437 72.222 0.00 0.00 39.43 5.73
786 2290 3.737172 GCGTTGCCGTTGCTCCAT 61.737 61.111 0.00 0.00 38.71 3.41
837 2341 3.053291 GTCGCCATTCCCGCACAA 61.053 61.111 0.00 0.00 0.00 3.33
1641 4053 2.027625 GGGCTACCGCATGATACGC 61.028 63.158 0.00 0.00 38.10 4.42
2370 5743 7.041721 TCCATTGCACATACTAGAACTTACAG 58.958 38.462 0.00 0.00 0.00 2.74
2590 5963 4.489679 AAAAAGAATCAGAAGCGACACC 57.510 40.909 0.00 0.00 0.00 4.16
3236 6612 3.354948 AGCACCTTCATGTCTTGCATA 57.645 42.857 11.85 0.00 35.74 3.14
3739 7116 3.008813 CCTTACCAGGCATATGAGCTGAT 59.991 47.826 6.97 0.00 31.53 2.90
3742 7119 2.038689 ACCAGGCATATGAGCTGATGAG 59.961 50.000 6.97 0.00 34.17 2.90
4338 7717 9.233232 GTTTATATTTAGCTAAGCATTGCGTTT 57.767 29.630 6.24 0.00 0.00 3.60
4370 7910 3.303132 CGGGCTAAGTTGCATTTATCGTC 60.303 47.826 0.00 0.00 34.04 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.249868 GGCCTTTGGTCTTTGGCAAC 60.250 55.000 0.00 0.00 46.53 4.17
9 10 1.406860 GGGCCTTTGGTCTTTGGCAA 61.407 55.000 0.84 0.00 46.53 4.52
10 11 1.836604 GGGCCTTTGGTCTTTGGCA 60.837 57.895 0.84 0.00 46.53 4.92
11 12 2.583441 GGGGCCTTTGGTCTTTGGC 61.583 63.158 0.84 0.00 44.22 4.52
12 13 1.913262 GGGGGCCTTTGGTCTTTGG 60.913 63.158 0.84 0.00 0.00 3.28
13 14 3.791640 GGGGGCCTTTGGTCTTTG 58.208 61.111 0.84 0.00 0.00 2.77
35 36 3.189646 TTGAAGGTGGGGGTGGGG 61.190 66.667 0.00 0.00 0.00 4.96
37 38 2.117423 GGTTGAAGGTGGGGGTGG 59.883 66.667 0.00 0.00 0.00 4.61
38 39 1.074951 GAGGTTGAAGGTGGGGGTG 59.925 63.158 0.00 0.00 0.00 4.61
39 40 2.160853 GGAGGTTGAAGGTGGGGGT 61.161 63.158 0.00 0.00 0.00 4.95
42 43 1.895131 CATTTGGAGGTTGAAGGTGGG 59.105 52.381 0.00 0.00 0.00 4.61
44 45 1.895131 CCCATTTGGAGGTTGAAGGTG 59.105 52.381 0.00 0.00 37.39 4.00
45 46 1.786441 TCCCATTTGGAGGTTGAAGGT 59.214 47.619 0.00 0.00 38.61 3.50
66 67 3.519930 GGCGAGGAGACGAGGGTC 61.520 72.222 0.00 0.00 43.76 4.46
68 69 2.700407 ATAGGGCGAGGAGACGAGGG 62.700 65.000 0.00 0.00 35.09 4.30
69 70 1.228306 ATAGGGCGAGGAGACGAGG 60.228 63.158 0.00 0.00 35.09 4.63
70 71 0.820074 ACATAGGGCGAGGAGACGAG 60.820 60.000 0.00 0.00 35.09 4.18
71 72 0.395311 AACATAGGGCGAGGAGACGA 60.395 55.000 0.00 0.00 35.09 4.20
72 73 0.249073 CAACATAGGGCGAGGAGACG 60.249 60.000 0.00 0.00 0.00 4.18
73 74 0.105039 CCAACATAGGGCGAGGAGAC 59.895 60.000 0.00 0.00 0.00 3.36
74 75 1.686325 GCCAACATAGGGCGAGGAGA 61.686 60.000 0.00 0.00 42.39 3.71
75 76 1.227674 GCCAACATAGGGCGAGGAG 60.228 63.158 0.00 0.00 42.39 3.69
76 77 2.908015 GCCAACATAGGGCGAGGA 59.092 61.111 0.00 0.00 42.39 3.71
82 83 2.819608 CCGGATATTTGCCAACATAGGG 59.180 50.000 0.00 0.00 0.00 3.53
83 84 3.486383 ACCGGATATTTGCCAACATAGG 58.514 45.455 9.46 0.00 0.00 2.57
85 86 3.135225 CGACCGGATATTTGCCAACATA 58.865 45.455 9.46 0.00 0.00 2.29
87 88 1.339247 ACGACCGGATATTTGCCAACA 60.339 47.619 9.46 0.00 0.00 3.33
88 89 1.329599 GACGACCGGATATTTGCCAAC 59.670 52.381 9.46 0.00 0.00 3.77
89 90 1.208535 AGACGACCGGATATTTGCCAA 59.791 47.619 9.46 0.00 0.00 4.52
91 92 1.217882 CAGACGACCGGATATTTGCC 58.782 55.000 9.46 0.00 0.00 4.52
92 93 1.202486 TCCAGACGACCGGATATTTGC 60.202 52.381 9.46 0.00 0.00 3.68
93 94 2.882927 TCCAGACGACCGGATATTTG 57.117 50.000 9.46 0.19 0.00 2.32
97 98 0.106369 ACCATCCAGACGACCGGATA 60.106 55.000 9.46 0.00 40.12 2.59
100 101 2.184322 CACCATCCAGACGACCGG 59.816 66.667 0.00 0.00 0.00 5.28
102 103 2.125106 GCCACCATCCAGACGACC 60.125 66.667 0.00 0.00 0.00 4.79
103 104 2.125106 GGCCACCATCCAGACGAC 60.125 66.667 0.00 0.00 0.00 4.34
104 105 0.689412 TATGGCCACCATCCAGACGA 60.689 55.000 8.16 0.00 40.74 4.20
105 106 0.250038 CTATGGCCACCATCCAGACG 60.250 60.000 8.16 0.00 40.74 4.18
106 107 0.536006 GCTATGGCCACCATCCAGAC 60.536 60.000 8.16 0.00 40.74 3.51
107 108 1.839191 GCTATGGCCACCATCCAGA 59.161 57.895 8.16 0.00 40.74 3.86
108 109 1.598962 CGCTATGGCCACCATCCAG 60.599 63.158 8.16 0.00 40.74 3.86
109 110 2.324014 GACGCTATGGCCACCATCCA 62.324 60.000 8.16 0.00 40.74 3.41
110 111 1.598130 GACGCTATGGCCACCATCC 60.598 63.158 8.16 0.00 40.74 3.51
111 112 0.601311 GAGACGCTATGGCCACCATC 60.601 60.000 8.16 1.32 40.74 3.51
112 113 1.447643 GAGACGCTATGGCCACCAT 59.552 57.895 8.16 4.26 46.99 3.55
113 114 2.900273 GAGACGCTATGGCCACCA 59.100 61.111 8.16 0.00 38.19 4.17
114 115 2.279517 CGAGACGCTATGGCCACC 60.280 66.667 8.16 0.00 34.44 4.61
115 116 1.878522 CACGAGACGCTATGGCCAC 60.879 63.158 8.16 0.00 34.44 5.01
116 117 1.884075 AACACGAGACGCTATGGCCA 61.884 55.000 8.56 8.56 34.44 5.36
117 118 1.153628 AACACGAGACGCTATGGCC 60.154 57.895 0.00 0.00 34.44 5.36
118 119 0.736325 ACAACACGAGACGCTATGGC 60.736 55.000 0.00 0.00 0.00 4.40
119 120 1.390123 CAACAACACGAGACGCTATGG 59.610 52.381 0.00 0.00 0.00 2.74
120 121 2.058798 ACAACAACACGAGACGCTATG 58.941 47.619 0.00 0.00 0.00 2.23
121 122 2.325761 GACAACAACACGAGACGCTAT 58.674 47.619 0.00 0.00 0.00 2.97
123 124 1.206745 CGACAACAACACGAGACGCT 61.207 55.000 0.00 0.00 0.00 5.07
124 125 1.198397 CGACAACAACACGAGACGC 59.802 57.895 0.00 0.00 0.00 5.19
125 126 1.844003 CCGACAACAACACGAGACG 59.156 57.895 0.00 0.00 0.00 4.18
126 127 1.149361 TGCCGACAACAACACGAGAC 61.149 55.000 0.00 0.00 0.00 3.36
127 128 0.874175 CTGCCGACAACAACACGAGA 60.874 55.000 0.00 0.00 0.00 4.04
128 129 1.564622 CTGCCGACAACAACACGAG 59.435 57.895 0.00 0.00 0.00 4.18
130 131 2.047151 AAGCTGCCGACAACAACACG 62.047 55.000 0.00 0.00 0.00 4.49
132 133 0.463654 AGAAGCTGCCGACAACAACA 60.464 50.000 0.00 0.00 0.00 3.33
133 134 0.235926 GAGAAGCTGCCGACAACAAC 59.764 55.000 0.00 0.00 0.00 3.32
134 135 1.221466 CGAGAAGCTGCCGACAACAA 61.221 55.000 0.00 0.00 0.00 2.83
135 136 1.664649 CGAGAAGCTGCCGACAACA 60.665 57.895 0.00 0.00 0.00 3.33
136 137 2.383527 CCGAGAAGCTGCCGACAAC 61.384 63.158 4.33 0.00 0.00 3.32
143 144 3.659089 TTACGGGCCGAGAAGCTGC 62.659 63.158 35.78 0.00 0.00 5.25
145 146 2.893398 CTTACGGGCCGAGAAGCT 59.107 61.111 35.78 11.90 0.00 3.74
147 148 2.202892 GGCTTACGGGCCGAGAAG 60.203 66.667 35.78 31.34 42.82 2.85
154 155 0.468648 AACCTAGATGGCTTACGGGC 59.531 55.000 0.00 0.00 40.22 6.13
155 156 2.963782 AGTAACCTAGATGGCTTACGGG 59.036 50.000 0.00 0.00 40.22 5.28
157 158 3.802685 GCAAGTAACCTAGATGGCTTACG 59.197 47.826 0.00 0.00 40.22 3.18
158 159 4.766375 TGCAAGTAACCTAGATGGCTTAC 58.234 43.478 0.00 0.00 40.22 2.34
159 160 5.630415 ATGCAAGTAACCTAGATGGCTTA 57.370 39.130 0.00 0.00 40.22 3.09
160 161 4.510167 ATGCAAGTAACCTAGATGGCTT 57.490 40.909 0.00 0.00 40.22 4.35
161 162 4.510167 AATGCAAGTAACCTAGATGGCT 57.490 40.909 0.00 0.00 40.22 4.75
162 163 4.640201 TGAAATGCAAGTAACCTAGATGGC 59.360 41.667 0.00 0.00 40.22 4.40
163 164 5.297776 CCTGAAATGCAAGTAACCTAGATGG 59.702 44.000 0.00 0.00 42.93 3.51
166 167 5.338381 CCTCCTGAAATGCAAGTAACCTAGA 60.338 44.000 0.00 0.00 0.00 2.43
167 168 4.878397 CCTCCTGAAATGCAAGTAACCTAG 59.122 45.833 0.00 0.00 0.00 3.02
169 170 3.330701 TCCTCCTGAAATGCAAGTAACCT 59.669 43.478 0.00 0.00 0.00 3.50
170 171 3.440522 GTCCTCCTGAAATGCAAGTAACC 59.559 47.826 0.00 0.00 0.00 2.85
171 172 3.440522 GGTCCTCCTGAAATGCAAGTAAC 59.559 47.826 0.00 0.00 0.00 2.50
174 175 1.707427 AGGTCCTCCTGAAATGCAAGT 59.293 47.619 0.00 0.00 43.33 3.16
175 176 2.503895 AGGTCCTCCTGAAATGCAAG 57.496 50.000 0.00 0.00 43.33 4.01
207 208 5.954757 TCCACACAAAGGACCCTAATAAAA 58.045 37.500 0.00 0.00 0.00 1.52
208 209 5.586155 TCCACACAAAGGACCCTAATAAA 57.414 39.130 0.00 0.00 0.00 1.40
218 219 4.102524 AGTGATACAAGTCCACACAAAGGA 59.897 41.667 0.00 0.00 34.47 3.36
219 220 4.389374 AGTGATACAAGTCCACACAAAGG 58.611 43.478 0.00 0.00 34.47 3.11
220 221 6.377327 AAAGTGATACAAGTCCACACAAAG 57.623 37.500 0.00 0.00 34.47 2.77
221 222 5.007234 CGAAAGTGATACAAGTCCACACAAA 59.993 40.000 0.00 0.00 34.47 2.83
222 223 4.509970 CGAAAGTGATACAAGTCCACACAA 59.490 41.667 0.00 0.00 34.47 3.33
224 225 4.304110 TCGAAAGTGATACAAGTCCACAC 58.696 43.478 0.00 0.00 33.53 3.82
226 227 7.772332 ATTATCGAAAGTGATACAAGTCCAC 57.228 36.000 0.00 0.00 30.77 4.02
227 228 9.529325 CTTATTATCGAAAGTGATACAAGTCCA 57.471 33.333 0.00 0.00 30.77 4.02
228 229 8.979574 CCTTATTATCGAAAGTGATACAAGTCC 58.020 37.037 0.00 0.00 30.77 3.85
259 260 4.074259 GCCTGGGCTCAAAATTGATTTTT 58.926 39.130 4.12 0.00 36.71 1.94
260 261 3.678289 GCCTGGGCTCAAAATTGATTTT 58.322 40.909 4.12 0.00 38.05 1.82
261 262 3.339253 GCCTGGGCTCAAAATTGATTT 57.661 42.857 4.12 0.00 36.46 2.17
274 275 2.827642 GTGCAGATGAGCCTGGGC 60.828 66.667 3.00 3.00 42.33 5.36
276 277 2.124403 GGGTGCAGATGAGCCTGG 60.124 66.667 0.00 0.00 34.82 4.45
280 281 4.819761 TCGCGGGTGCAGATGAGC 62.820 66.667 6.13 0.00 42.97 4.26
281 282 2.107750 ATCGCGGGTGCAGATGAG 59.892 61.111 6.13 0.00 42.97 2.90
282 283 2.202919 CATCGCGGGTGCAGATGA 60.203 61.111 6.13 0.00 45.99 2.92
283 284 3.274586 CCATCGCGGGTGCAGATG 61.275 66.667 6.13 6.02 44.39 2.90
284 285 3.451556 CTCCATCGCGGGTGCAGAT 62.452 63.158 6.13 0.00 42.97 2.90
285 286 4.147449 CTCCATCGCGGGTGCAGA 62.147 66.667 6.13 0.00 42.97 4.26
286 287 3.664025 TTCTCCATCGCGGGTGCAG 62.664 63.158 6.13 1.11 42.97 4.41
287 288 2.739849 TTTTCTCCATCGCGGGTGCA 62.740 55.000 6.13 0.00 42.97 4.57
288 289 1.582610 TTTTTCTCCATCGCGGGTGC 61.583 55.000 6.13 0.00 34.36 5.01
289 290 2.550487 TTTTTCTCCATCGCGGGTG 58.450 52.632 6.13 5.79 34.36 4.61
349 350 7.975058 CACACATCAAATTATCTACCATGCAAA 59.025 33.333 0.00 0.00 0.00 3.68
350 351 7.338957 TCACACATCAAATTATCTACCATGCAA 59.661 33.333 0.00 0.00 0.00 4.08
351 352 6.827762 TCACACATCAAATTATCTACCATGCA 59.172 34.615 0.00 0.00 0.00 3.96
352 353 7.263100 TCACACATCAAATTATCTACCATGC 57.737 36.000 0.00 0.00 0.00 4.06
354 355 7.000472 CCCTCACACATCAAATTATCTACCAT 59.000 38.462 0.00 0.00 0.00 3.55
355 356 6.356556 CCCTCACACATCAAATTATCTACCA 58.643 40.000 0.00 0.00 0.00 3.25
356 357 5.239525 GCCCTCACACATCAAATTATCTACC 59.760 44.000 0.00 0.00 0.00 3.18
357 358 6.017605 CAGCCCTCACACATCAAATTATCTAC 60.018 42.308 0.00 0.00 0.00 2.59
358 359 6.057533 CAGCCCTCACACATCAAATTATCTA 58.942 40.000 0.00 0.00 0.00 1.98
359 360 4.885907 CAGCCCTCACACATCAAATTATCT 59.114 41.667 0.00 0.00 0.00 1.98
360 361 4.498682 GCAGCCCTCACACATCAAATTATC 60.499 45.833 0.00 0.00 0.00 1.75
361 362 3.382546 GCAGCCCTCACACATCAAATTAT 59.617 43.478 0.00 0.00 0.00 1.28
363 364 1.547372 GCAGCCCTCACACATCAAATT 59.453 47.619 0.00 0.00 0.00 1.82
365 366 0.111061 AGCAGCCCTCACACATCAAA 59.889 50.000 0.00 0.00 0.00 2.69
366 367 0.321919 GAGCAGCCCTCACACATCAA 60.322 55.000 0.00 0.00 40.45 2.57
367 368 1.297689 GAGCAGCCCTCACACATCA 59.702 57.895 0.00 0.00 40.45 3.07
368 369 1.451028 GGAGCAGCCCTCACACATC 60.451 63.158 4.59 0.00 42.62 3.06
370 371 1.782201 ATTGGAGCAGCCCTCACACA 61.782 55.000 4.59 0.00 42.62 3.72
371 372 0.610232 AATTGGAGCAGCCCTCACAC 60.610 55.000 4.59 0.00 42.62 3.82
372 373 0.112995 AAATTGGAGCAGCCCTCACA 59.887 50.000 4.59 0.00 42.62 3.58
373 374 1.067354 CAAAATTGGAGCAGCCCTCAC 60.067 52.381 4.59 0.00 42.62 3.51
374 375 1.259609 CAAAATTGGAGCAGCCCTCA 58.740 50.000 4.59 0.00 42.62 3.86
439 440 4.625742 CGGAACAGTACATGACCAGTAAAG 59.374 45.833 0.00 0.00 0.00 1.85
447 448 2.005971 GGGACGGAACAGTACATGAC 57.994 55.000 0.00 0.00 0.00 3.06
463 464 3.218453 TCAGCAAAAAGACAAATCGGGA 58.782 40.909 0.00 0.00 0.00 5.14
464 465 3.253188 TCTCAGCAAAAAGACAAATCGGG 59.747 43.478 0.00 0.00 0.00 5.14
483 484 4.727507 TTTGGACATCTGAGTAGCTCTC 57.272 45.455 0.00 0.00 43.03 3.20
484 485 4.713814 TCATTTGGACATCTGAGTAGCTCT 59.286 41.667 0.00 0.00 0.00 4.09
485 486 5.016051 TCATTTGGACATCTGAGTAGCTC 57.984 43.478 0.00 0.00 0.00 4.09
486 487 5.366186 AGATCATTTGGACATCTGAGTAGCT 59.634 40.000 0.00 0.00 0.00 3.32
487 488 5.466058 CAGATCATTTGGACATCTGAGTAGC 59.534 44.000 2.54 0.00 44.35 3.58
488 489 6.814043 TCAGATCATTTGGACATCTGAGTAG 58.186 40.000 6.73 0.00 44.92 2.57
493 495 8.248253 TCAATTTTCAGATCATTTGGACATCTG 58.752 33.333 0.00 2.32 43.38 2.90
570 572 7.712264 AAACATCATTCGCAAAAGATTCAAA 57.288 28.000 0.00 0.00 0.00 2.69
572 574 6.922407 TCAAAACATCATTCGCAAAAGATTCA 59.078 30.769 0.00 0.00 0.00 2.57
581 583 1.198867 CCGGTCAAAACATCATTCGCA 59.801 47.619 0.00 0.00 0.00 5.10
582 584 1.467374 CCCGGTCAAAACATCATTCGC 60.467 52.381 0.00 0.00 0.00 4.70
588 590 0.887933 ATGCACCCGGTCAAAACATC 59.112 50.000 0.00 0.00 0.00 3.06
662 2166 7.661847 CCTGCCTACTCTCTCTTTTCTTTTTAA 59.338 37.037 0.00 0.00 0.00 1.52
663 2167 7.162082 CCTGCCTACTCTCTCTTTTCTTTTTA 58.838 38.462 0.00 0.00 0.00 1.52
664 2168 6.000840 CCTGCCTACTCTCTCTTTTCTTTTT 58.999 40.000 0.00 0.00 0.00 1.94
665 2169 5.555966 CCTGCCTACTCTCTCTTTTCTTTT 58.444 41.667 0.00 0.00 0.00 2.27
836 2340 0.304705 CGTTTCTGCTTCGTGCTGTT 59.695 50.000 5.00 0.00 43.37 3.16
837 2341 1.498865 CCGTTTCTGCTTCGTGCTGT 61.499 55.000 5.00 0.00 43.37 4.40
1005 3417 4.097361 GAGGGAAGGGCGGTGTCC 62.097 72.222 0.00 0.00 0.00 4.02
2049 5393 7.440523 AAGTACTCTATTCCTGCAGTTTTTG 57.559 36.000 13.81 0.00 0.00 2.44
2123 5467 6.260050 ACATACATACAAAATCAAGTAGCCCG 59.740 38.462 0.00 0.00 0.00 6.13
2370 5743 0.040425 ATTCGCTGAACCAAACACGC 60.040 50.000 0.00 0.00 0.00 5.34
2541 5914 2.844122 ACTGACTTTGTTTGGTTCGC 57.156 45.000 0.00 0.00 0.00 4.70
2590 5963 4.514066 GCAATGGGTTTCCGTAATAGGTAG 59.486 45.833 0.00 0.00 35.24 3.18
3695 7072 3.074369 TCGCTCATTGGCCGAGGA 61.074 61.111 7.23 7.23 0.00 3.71
3739 7116 0.471780 TTCAGCAGGTCCCTCACTCA 60.472 55.000 0.00 0.00 0.00 3.41
3742 7119 1.815003 CATTTTCAGCAGGTCCCTCAC 59.185 52.381 0.00 0.00 0.00 3.51
3930 7307 7.516198 AGCTTCGCCATAATAATCAAGAAAT 57.484 32.000 0.00 0.00 0.00 2.17
4145 7522 1.332904 CGTGTTCCAAACAACGCTCTC 60.333 52.381 0.00 0.00 44.16 3.20
4334 7713 1.443702 GCCCGCCAAGCTTAAAACG 60.444 57.895 0.00 0.34 0.00 3.60
4338 7717 0.326927 ACTTAGCCCGCCAAGCTTAA 59.673 50.000 0.00 0.00 41.83 1.85
4370 7910 3.363970 CGTTGAACAAGATCAAACGGGAG 60.364 47.826 0.00 0.00 40.76 4.30
4440 7980 1.953231 CTCATCCGAGCACAGGAGCA 61.953 60.000 1.55 0.00 41.66 4.26
4555 8225 5.410439 GTGCCAAATTTCAAAGCATTCAGAT 59.590 36.000 5.35 0.00 35.62 2.90
4558 8228 3.493877 CGTGCCAAATTTCAAAGCATTCA 59.506 39.130 5.35 0.00 35.62 2.57
4658 8329 8.258007 TCATCTACACCCTATGAACAGTAAAAG 58.742 37.037 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.