Multiple sequence alignment - TraesCS5B01G130600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G130600 chr5B 100.000 9105 0 0 1 9105 243126872 243135976 0.000000e+00 16814.0
1 TraesCS5B01G130600 chr5B 84.104 346 42 10 282 623 541629497 541629161 1.140000e-83 322.0
2 TraesCS5B01G130600 chr5A 96.042 4068 123 14 804 4848 294240863 294244915 0.000000e+00 6586.0
3 TraesCS5B01G130600 chr5A 93.907 4333 149 40 4849 9105 294245016 294249309 0.000000e+00 6433.0
4 TraesCS5B01G130600 chr5A 89.664 803 63 14 1 791 294225273 294226067 0.000000e+00 1005.0
5 TraesCS5B01G130600 chr5A 97.368 38 1 0 4966 5003 509123613 509123576 2.120000e-06 65.8
6 TraesCS5B01G130600 chr5D 97.441 2696 49 8 858 3545 220186330 220189013 0.000000e+00 4578.0
7 TraesCS5B01G130600 chr5D 95.169 2815 88 27 6328 9105 220191329 220194132 0.000000e+00 4401.0
8 TraesCS5B01G130600 chr5D 91.904 1161 56 8 4849 5973 220189678 220190836 0.000000e+00 1589.0
9 TraesCS5B01G130600 chr5D 96.629 534 18 0 3603 4136 220189013 220189546 0.000000e+00 887.0
10 TraesCS5B01G130600 chr5D 89.014 355 32 6 339 691 220185571 220185920 5.050000e-117 433.0
11 TraesCS5B01G130600 chr5D 86.173 405 35 13 483 873 220185919 220186316 1.410000e-112 418.0
12 TraesCS5B01G130600 chr5D 83.140 344 49 7 282 623 481128804 481128468 1.150000e-78 305.0
13 TraesCS5B01G130600 chr5D 93.233 133 6 1 6005 6137 220190836 220190965 9.330000e-45 193.0
14 TraesCS5B01G130600 chr5D 97.059 34 1 0 4815 4848 220189543 220189576 3.550000e-04 58.4
15 TraesCS5B01G130600 chr7A 89.914 347 33 1 4467 4813 691049106 691049450 6.490000e-121 446.0
16 TraesCS5B01G130600 chr7A 83.916 286 30 8 4494 4767 406033343 406033624 9.070000e-65 259.0
17 TraesCS5B01G130600 chr7A 81.562 320 51 7 299 615 613554093 613553779 3.260000e-64 257.0
18 TraesCS5B01G130600 chr2D 87.538 329 38 3 4465 4792 47662827 47663153 2.400000e-100 377.0
19 TraesCS5B01G130600 chr2D 85.535 318 28 12 4140 4442 47656178 47656492 5.310000e-82 316.0
20 TraesCS5B01G130600 chr2D 80.822 292 44 7 8 289 62193081 62193370 1.540000e-52 219.0
21 TraesCS5B01G130600 chr2D 89.744 78 7 1 4139 4216 587735595 587735519 2.090000e-16 99.0
22 TraesCS5B01G130600 chr7B 87.462 327 32 3 4467 4792 726964776 726965094 1.440000e-97 368.0
23 TraesCS5B01G130600 chr7B 93.443 244 14 2 5809 6051 445663613 445663371 2.420000e-95 361.0
24 TraesCS5B01G130600 chr7B 80.466 343 57 9 282 623 747583564 747583897 4.220000e-63 254.0
25 TraesCS5B01G130600 chr7B 83.509 285 26 11 4518 4792 364632816 364632543 7.060000e-61 246.0
26 TraesCS5B01G130600 chr4D 93.724 239 14 1 5809 6047 220345206 220344969 3.130000e-94 357.0
27 TraesCS5B01G130600 chr4D 92.000 250 17 3 5811 6059 313574436 313574189 1.880000e-91 348.0
28 TraesCS5B01G130600 chr4D 92.135 89 3 1 3277 3365 123302190 123302274 1.240000e-23 122.0
29 TraesCS5B01G130600 chr4D 92.135 89 3 1 3277 3365 123718807 123718891 1.240000e-23 122.0
30 TraesCS5B01G130600 chr4D 92.135 89 3 1 3277 3365 241164992 241165076 1.240000e-23 122.0
31 TraesCS5B01G130600 chr6D 93.033 244 15 2 5809 6051 115323819 115323577 1.120000e-93 355.0
32 TraesCS5B01G130600 chr6D 92.135 89 3 1 3277 3365 425588058 425587974 1.240000e-23 122.0
33 TraesCS5B01G130600 chr2B 93.697 238 14 1 5809 6046 718591296 718591532 1.120000e-93 355.0
34 TraesCS5B01G130600 chr3A 92.339 248 17 2 5805 6051 375018016 375018262 1.450000e-92 351.0
35 TraesCS5B01G130600 chr3A 81.105 344 56 7 282 623 638782615 638782279 5.420000e-67 267.0
36 TraesCS5B01G130600 chr3A 81.250 144 17 8 4140 4277 694021355 694021216 3.480000e-19 108.0
37 TraesCS5B01G130600 chr3A 95.238 63 3 0 4140 4202 535079974 535080036 5.820000e-17 100.0
38 TraesCS5B01G130600 chr4A 92.623 244 16 2 5809 6051 146552254 146552012 5.230000e-92 350.0
39 TraesCS5B01G130600 chr3B 84.302 344 47 6 282 623 72499053 72499391 6.820000e-86 329.0
40 TraesCS5B01G130600 chr3B 95.312 64 3 0 4139 4202 369282920 369282983 1.620000e-17 102.0
41 TraesCS5B01G130600 chr7D 81.980 394 32 12 4203 4588 598592529 598592891 1.920000e-76 298.0
42 TraesCS5B01G130600 chr7D 91.469 211 15 3 4585 4793 598593320 598593529 4.160000e-73 287.0
43 TraesCS5B01G130600 chr7D 83.387 313 45 6 296 606 115778048 115778355 5.380000e-72 283.0
44 TraesCS5B01G130600 chr7D 83.898 118 15 4 4137 4252 465342747 465342632 9.670000e-20 110.0
45 TraesCS5B01G130600 chr6B 93.258 89 2 1 3277 3365 613189163 613189079 2.670000e-25 128.0
46 TraesCS5B01G130600 chr6B 88.462 78 8 1 4140 4217 258000909 258000985 9.730000e-15 93.5
47 TraesCS5B01G130600 chrUn 92.135 89 3 1 3277 3365 391007177 391007261 1.240000e-23 122.0
48 TraesCS5B01G130600 chrUn 81.159 138 22 2 4651 4786 464109888 464109753 3.480000e-19 108.0
49 TraesCS5B01G130600 chr1D 92.135 89 3 1 3277 3365 141310836 141310752 1.240000e-23 122.0
50 TraesCS5B01G130600 chr3D 84.314 102 14 1 4651 4752 558091320 558091221 2.090000e-16 99.0
51 TraesCS5B01G130600 chr1B 88.312 77 8 1 4140 4216 98560673 98560748 3.500000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G130600 chr5B 243126872 243135976 9104 False 16814.000 16814 100.00000 1 9105 1 chr5B.!!$F1 9104
1 TraesCS5B01G130600 chr5A 294240863 294249309 8446 False 6509.500 6586 94.97450 804 9105 2 chr5A.!!$F2 8301
2 TraesCS5B01G130600 chr5A 294225273 294226067 794 False 1005.000 1005 89.66400 1 791 1 chr5A.!!$F1 790
3 TraesCS5B01G130600 chr5D 220185571 220194132 8561 False 1569.675 4578 93.32775 339 9105 8 chr5D.!!$F1 8766
4 TraesCS5B01G130600 chr7D 598592529 598593529 1000 False 292.500 298 86.72450 4203 4793 2 chr7D.!!$F2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 1138 0.451783 GTAAATTGCCCTCGGTGCAG 59.548 55.0 0.00 0.0 40.35 4.41 F
884 1140 0.827507 AAATTGCCCTCGGTGCAGTT 60.828 50.0 0.00 0.0 39.91 3.16 F
2422 2689 0.710567 CGCGAGCAGAGTTGTTAGTG 59.289 55.0 0.00 0.0 0.00 2.74 F
3676 3949 1.342672 ACGGGGGTTATAGGCTGTGG 61.343 60.0 0.00 0.0 0.00 4.17 F
5468 6301 0.031994 GCATTGTTGTCGTTGGCCTT 59.968 50.0 3.32 0.0 0.00 4.35 F
6283 7359 0.043637 ATAGGGGGTCCGGTTGAAGA 59.956 55.0 0.00 0.0 38.33 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2403 2670 0.710567 CACTAACAACTCTGCTCGCG 59.289 55.000 0.0 0.0 0.00 5.87 R
2751 3018 3.924114 TTCTCAAAGTTGGTCTCCACA 57.076 42.857 0.0 0.0 30.78 4.17 R
4012 4285 0.037697 CGGACACGGACAAATGAGGA 60.038 55.000 0.0 0.0 36.18 3.71 R
5513 6346 0.032678 CGCTCTATCATCGCAACCCT 59.967 55.000 0.0 0.0 0.00 4.34 R
7229 8333 1.077716 GGCGGGAAACTGGTGCTAT 60.078 57.895 0.0 0.0 37.13 2.97 R
8212 9325 0.320374 CGGTACAGCCAGGAACTTCA 59.680 55.000 0.0 0.0 34.60 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 2.417257 CCCCCATCCGTGTGCATTG 61.417 63.158 0.00 0.00 0.00 2.82
56 58 0.991920 CATTGACTGGGGTAGGTGGT 59.008 55.000 0.00 0.00 0.00 4.16
70 72 0.533951 GGTGGTAGGTAGTTGGACGG 59.466 60.000 0.00 0.00 0.00 4.79
71 73 1.260544 GTGGTAGGTAGTTGGACGGT 58.739 55.000 0.00 0.00 0.00 4.83
148 150 0.927537 GTTTGACCGCAAAGCCAAAC 59.072 50.000 0.00 0.00 44.12 2.93
162 164 1.948635 CAAACCAAGTTTGCGCCCG 60.949 57.895 4.18 0.00 44.59 6.13
189 194 0.602905 AAGCCGGACCAGAAAGAACG 60.603 55.000 5.05 0.00 0.00 3.95
219 225 4.839706 GGGGTGGCGCATTGGGAT 62.840 66.667 10.83 0.00 0.00 3.85
220 226 3.530260 GGGTGGCGCATTGGGATG 61.530 66.667 10.83 0.00 36.32 3.51
231 237 2.936993 GCATTGGGATGACTCGTCTGTT 60.937 50.000 0.00 0.00 35.16 3.16
232 238 3.338249 CATTGGGATGACTCGTCTGTTT 58.662 45.455 0.00 0.00 35.16 2.83
234 240 1.691976 TGGGATGACTCGTCTGTTTGT 59.308 47.619 0.00 0.00 0.00 2.83
246 252 2.122768 TCTGTTTGTTTGGGCCCAAAT 58.877 42.857 44.24 0.00 45.90 2.32
248 254 3.323403 TCTGTTTGTTTGGGCCCAAATAG 59.677 43.478 44.24 33.44 45.90 1.73
252 258 4.390129 TTGTTTGGGCCCAAATAGACTA 57.610 40.909 44.24 29.20 45.90 2.59
253 259 3.692690 TGTTTGGGCCCAAATAGACTAC 58.307 45.455 44.24 32.46 45.90 2.73
254 260 2.681344 GTTTGGGCCCAAATAGACTACG 59.319 50.000 44.24 0.00 45.90 3.51
255 261 0.834612 TGGGCCCAAATAGACTACGG 59.165 55.000 26.33 0.00 0.00 4.02
256 262 1.125633 GGGCCCAAATAGACTACGGA 58.874 55.000 19.95 0.00 0.00 4.69
260 266 2.035576 GCCCAAATAGACTACGGACGAT 59.964 50.000 0.00 0.00 0.00 3.73
261 267 3.492137 GCCCAAATAGACTACGGACGATT 60.492 47.826 0.00 0.00 0.00 3.34
262 268 4.690122 CCCAAATAGACTACGGACGATTT 58.310 43.478 0.00 0.00 0.00 2.17
263 269 4.506654 CCCAAATAGACTACGGACGATTTG 59.493 45.833 0.00 0.00 38.62 2.32
264 270 4.506654 CCAAATAGACTACGGACGATTTGG 59.493 45.833 14.60 14.60 45.05 3.28
285 294 3.365265 CCTGCGTTGGAGTTGGCC 61.365 66.667 0.00 0.00 0.00 5.36
304 313 2.420687 GCCTAAAGACCTCACCCTCATG 60.421 54.545 0.00 0.00 0.00 3.07
305 314 2.420687 CCTAAAGACCTCACCCTCATGC 60.421 54.545 0.00 0.00 0.00 4.06
318 327 1.063717 CCTCATGCCCCCAGTAACATT 60.064 52.381 0.00 0.00 0.00 2.71
494 707 5.955961 TCATTGAGTATCCTTCATGTCCA 57.044 39.130 0.00 0.00 0.00 4.02
525 738 5.571357 TCAAGAGCGTTGAACAAAGTTTTTC 59.429 36.000 2.38 0.00 0.00 2.29
573 786 4.461992 AAACACCGCACATAATATACGC 57.538 40.909 0.00 0.00 0.00 4.42
575 788 3.659786 ACACCGCACATAATATACGCAT 58.340 40.909 0.00 0.00 0.00 4.73
791 1007 8.856247 GTTGTGAACAAAGAAATTTAAACTCGT 58.144 29.630 0.00 0.00 37.63 4.18
794 1010 9.712359 GTGAACAAAGAAATTTAAACTCGTACT 57.288 29.630 0.00 0.00 0.00 2.73
827 1049 4.257267 TGCCATGGATCACTATCTTACG 57.743 45.455 18.40 0.00 32.29 3.18
833 1055 7.630924 CCATGGATCACTATCTTACGTTTTTC 58.369 38.462 5.56 0.00 32.29 2.29
856 1084 8.703604 TTCTTAGAAAAATCACTATCTCACCG 57.296 34.615 0.00 0.00 0.00 4.94
876 1104 1.737793 GACCACTGTAAATTGCCCTCG 59.262 52.381 0.00 0.00 0.00 4.63
882 1138 0.451783 GTAAATTGCCCTCGGTGCAG 59.548 55.000 0.00 0.00 40.35 4.41
884 1140 0.827507 AAATTGCCCTCGGTGCAGTT 60.828 50.000 0.00 0.00 39.91 3.16
1126 1383 6.306987 AGCAGAAAGGAAGAAAATCCAACTA 58.693 36.000 0.00 0.00 42.27 2.24
1281 1538 3.471354 GGTACGCAACCCTAGCAAT 57.529 52.632 0.00 0.00 43.16 3.56
1528 1785 2.049156 TGTCTCTGTCGCAAGCGG 60.049 61.111 14.98 0.00 40.25 5.52
1564 1821 2.209690 TGTACATCCGGTGTGAGAGA 57.790 50.000 16.79 2.38 42.24 3.10
1592 1849 5.770162 AGAAGTAAGTTGATTCCACCTTTGG 59.230 40.000 0.00 0.00 45.56 3.28
1916 2173 6.851222 AGTGCTTCATTTGGTATATTCGAG 57.149 37.500 0.00 0.00 0.00 4.04
2103 2360 3.788333 TCTAAAATTGGCATGCTCAGC 57.212 42.857 18.92 0.53 0.00 4.26
2267 2527 1.003331 TGTCGTTGTTTCATTGCCGAC 60.003 47.619 0.00 0.00 43.49 4.79
2403 2670 6.540189 GCCCCAATATGATCATCTATGTGTAC 59.460 42.308 12.53 0.00 0.00 2.90
2422 2689 0.710567 CGCGAGCAGAGTTGTTAGTG 59.289 55.000 0.00 0.00 0.00 2.74
2478 2745 4.525912 AGCCAAGTTGGAAATCACAATC 57.474 40.909 26.52 3.43 40.96 2.67
2603 2870 8.579850 TCAGTTGCAGTCCTTGATATTTTATT 57.420 30.769 0.00 0.00 0.00 1.40
2604 2871 9.023962 TCAGTTGCAGTCCTTGATATTTTATTT 57.976 29.630 0.00 0.00 0.00 1.40
2605 2872 9.643693 CAGTTGCAGTCCTTGATATTTTATTTT 57.356 29.630 0.00 0.00 0.00 1.82
2649 2916 2.201732 TCAATTATTCAGGACGCTCGC 58.798 47.619 0.00 0.00 0.00 5.03
2751 3018 3.260100 CCCCTGCCAGTTCCCACT 61.260 66.667 0.00 0.00 0.00 4.00
2821 3088 6.659668 AGCTGTATGTGTTAGAGTCTTGTCTA 59.340 38.462 0.00 0.00 0.00 2.59
2859 3126 2.173964 GCCGTGTGATGTTTTTATCGC 58.826 47.619 0.00 0.00 37.92 4.58
2991 3258 3.217626 ACCTTGGACAAGCTTCAGAAAG 58.782 45.455 6.54 0.00 37.11 2.62
3208 3475 3.417101 TGGTTGCCGAGAATACATGTTT 58.583 40.909 2.30 0.00 0.00 2.83
3304 3571 4.718940 ATTTGGATTTTAGCGAACAGGG 57.281 40.909 0.00 0.00 0.00 4.45
3379 3646 4.109050 GCTAGTTGGAGTCAGATTTCTCG 58.891 47.826 0.00 0.00 0.00 4.04
3401 3668 4.922103 CGTCCTGGTAGAAAGAGTTACAAC 59.078 45.833 0.00 0.00 0.00 3.32
3633 3906 3.831727 ATTGGGGCCAACTGCAGCA 62.832 57.895 15.27 0.00 43.89 4.41
3676 3949 1.342672 ACGGGGGTTATAGGCTGTGG 61.343 60.000 0.00 0.00 0.00 4.17
3844 4117 9.743057 CCTGTCAGTATTTTTAATTCAAACACA 57.257 29.630 0.00 0.00 0.00 3.72
3867 4140 4.444056 ACATCTAATTGCGTGTTGTTTTGC 59.556 37.500 0.00 0.00 0.00 3.68
3898 4171 2.235016 ACACCAAGAAGGCGCAAATTA 58.765 42.857 10.83 0.00 43.14 1.40
4085 4358 2.293122 ACATACACAAGCATGCAACGTT 59.707 40.909 21.98 1.65 0.00 3.99
4196 4469 1.393603 GCCCTACCTTGATTTCCAGC 58.606 55.000 0.00 0.00 0.00 4.85
4228 4501 6.584942 GGTTTTATGTATACAGATCGATCGCA 59.415 38.462 19.33 12.45 0.00 5.10
4349 4622 0.036732 GGATGCTCCAGTCCACAACA 59.963 55.000 0.00 0.00 36.28 3.33
4367 4640 1.478510 ACACTCGATCAGGGCTAGTTG 59.521 52.381 0.00 0.00 0.00 3.16
4382 4655 4.552698 GCTAGTTGCTTGGTTTGTGACCT 61.553 47.826 0.00 0.00 43.11 3.85
4394 4667 3.777465 TTGTGACCTAGCGATAGTGAC 57.223 47.619 6.99 0.90 39.35 3.67
4504 4780 2.237893 CAGGGGTTAGTACGGAATGGTT 59.762 50.000 0.00 0.00 0.00 3.67
4513 4789 4.805219 AGTACGGAATGGTTTGCATTTTC 58.195 39.130 0.00 0.00 0.00 2.29
4520 4796 6.454795 GGAATGGTTTGCATTTTCTCTTACA 58.545 36.000 0.00 0.00 0.00 2.41
4534 4810 7.985634 TTTCTCTTACATTTGCAAAGTGTTC 57.014 32.000 23.11 0.00 44.96 3.18
4606 5314 8.132995 GGCTTAATATTGTAAAATTAGTGGCGT 58.867 33.333 0.00 0.00 0.00 5.68
4860 5670 5.307716 TCATCATACTCCTACATGCCATCAA 59.692 40.000 0.00 0.00 0.00 2.57
4876 5686 4.393680 GCCATCAAACTACCACAATAACGA 59.606 41.667 0.00 0.00 0.00 3.85
4930 5740 6.542735 AGGCTAAAGCATAAAGTAAAGTAGGC 59.457 38.462 4.07 0.00 44.36 3.93
5220 6030 1.078143 GCGACTCCTCAATGCCCTT 60.078 57.895 0.00 0.00 0.00 3.95
5299 6132 4.373116 GGGACCGCTGCTTGACGA 62.373 66.667 0.00 0.00 0.00 4.20
5304 6137 2.729491 CGCTGCTTGACGACACGA 60.729 61.111 0.00 0.00 0.00 4.35
5396 6229 2.738521 CTTCTCACGGTGGGCACG 60.739 66.667 8.50 0.00 37.36 5.34
5406 6239 3.545574 TGGGCACGCTGTGTCTCA 61.546 61.111 11.86 7.20 38.33 3.27
5468 6301 0.031994 GCATTGTTGTCGTTGGCCTT 59.968 50.000 3.32 0.00 0.00 4.35
5475 6308 1.629043 TGTCGTTGGCCTTAGACTCT 58.371 50.000 20.02 0.00 34.92 3.24
5513 6346 2.707849 GGACAAGCGCCCTCGACTA 61.708 63.158 2.29 0.00 38.10 2.59
5523 6356 2.116383 CCTCGACTAGGGTTGCGAT 58.884 57.895 0.00 0.00 42.32 4.58
5598 6434 2.113433 GCATCTGGGCAGCTGTGAG 61.113 63.158 16.64 8.87 0.00 3.51
5600 6436 3.341202 ATCTGGGCAGCTGTGAGGC 62.341 63.158 16.64 0.45 0.00 4.70
5664 6510 0.176680 CTGCTTGTCCGAGTAGGCAT 59.823 55.000 0.00 0.00 40.77 4.40
5716 6562 1.000993 ACCTGGCGGACTCAGATCT 59.999 57.895 0.00 0.00 34.36 2.75
5790 6636 2.622942 GAGTGGTCTGTTCAAAATGGCA 59.377 45.455 0.00 0.00 0.00 4.92
5840 6686 5.450550 CGTGCTGATAATGTCAAGAGAGGTA 60.451 44.000 0.00 0.00 36.14 3.08
5871 6717 2.289694 CGAACTTGACATGGGAGGAGTT 60.290 50.000 0.00 0.00 0.00 3.01
5885 6731 6.261435 TGGGAGGAGTTTGTAAAGAGAGATA 58.739 40.000 0.00 0.00 0.00 1.98
5904 6750 7.301420 AGAGATATGAAGGACTGGAGTATCAA 58.699 38.462 0.00 0.00 36.25 2.57
5995 6841 4.192317 GCGAGATCTTATTGGTTTCACCT 58.808 43.478 0.00 0.00 39.58 4.00
6046 6895 5.341407 CAAAGCTTTGTTGTTGTTGTTGT 57.659 34.783 27.59 0.00 33.59 3.32
6055 6904 1.537638 TGTTGTTGTTGTGTTGCGTCT 59.462 42.857 0.00 0.00 0.00 4.18
6062 6911 0.250124 TTGTGTTGCGTCTAGGGTGG 60.250 55.000 0.00 0.00 0.00 4.61
6073 6922 1.012049 TCTAGGGTGGGGATTGGGATT 59.988 52.381 0.00 0.00 0.00 3.01
6177 7026 0.109597 GAACAGCGCAGACATTTGGG 60.110 55.000 11.47 0.00 0.00 4.12
6185 7034 2.565841 GCAGACATTTGGGCTAGGTAG 58.434 52.381 0.00 0.00 0.00 3.18
6273 7349 3.567209 GGGGCGGAATAGGGGGTC 61.567 72.222 0.00 0.00 0.00 4.46
6274 7350 3.567209 GGGCGGAATAGGGGGTCC 61.567 72.222 0.00 0.00 0.00 4.46
6278 7354 4.078167 GGAATAGGGGGTCCGGTT 57.922 61.111 0.00 0.00 38.33 4.44
6279 7355 1.530283 GGAATAGGGGGTCCGGTTG 59.470 63.158 0.00 0.00 38.33 3.77
6280 7356 0.984432 GGAATAGGGGGTCCGGTTGA 60.984 60.000 0.00 0.00 38.33 3.18
6281 7357 0.913924 GAATAGGGGGTCCGGTTGAA 59.086 55.000 0.00 0.00 38.33 2.69
6282 7358 0.916809 AATAGGGGGTCCGGTTGAAG 59.083 55.000 0.00 0.00 38.33 3.02
6283 7359 0.043637 ATAGGGGGTCCGGTTGAAGA 59.956 55.000 0.00 0.00 38.33 2.87
6284 7360 0.043637 TAGGGGGTCCGGTTGAAGAT 59.956 55.000 0.00 0.00 38.33 2.40
6285 7361 0.845102 AGGGGGTCCGGTTGAAGATT 60.845 55.000 0.00 0.00 38.33 2.40
6286 7362 0.393944 GGGGGTCCGGTTGAAGATTC 60.394 60.000 0.00 0.00 0.00 2.52
6287 7363 0.618981 GGGGTCCGGTTGAAGATTCT 59.381 55.000 0.00 0.00 0.00 2.40
6562 7641 2.098614 TCTTTGCTGCAAACCAACTGA 58.901 42.857 22.84 14.67 0.00 3.41
6662 7764 4.796618 GCGGAGTATAACCCAGATTCAGTC 60.797 50.000 0.00 0.00 0.00 3.51
6679 7781 1.202698 AGTCCGGCATCAGATAAAGGC 60.203 52.381 0.00 0.00 0.00 4.35
6866 7968 2.483877 GTCAGCAATTGATTGACCGTCA 59.516 45.455 22.87 0.00 40.14 4.35
6948 8051 1.270274 GCATGAAACATCACTGTGGCA 59.730 47.619 8.11 0.00 35.22 4.92
7123 8227 3.070302 ACACAGGACTCTTGACTCCTTTC 59.930 47.826 0.00 0.00 34.40 2.62
7124 8228 3.323403 CACAGGACTCTTGACTCCTTTCT 59.677 47.826 0.00 0.00 34.40 2.52
7174 8278 1.078759 CGCCTCACACGAACCATCTC 61.079 60.000 0.00 0.00 0.00 2.75
7229 8333 2.291465 GCAGCTGATGTGACTGTTCAAA 59.709 45.455 20.43 0.00 31.90 2.69
7323 8427 5.504173 GCGCTGATAGTCTTAAACCCAAATC 60.504 44.000 0.00 0.00 0.00 2.17
7455 8559 4.623932 TTCTGTGCTCTTAACTGATGGT 57.376 40.909 0.00 0.00 0.00 3.55
7487 8593 6.822442 ACAATCCCTAAAACAAAATCGGTTT 58.178 32.000 0.00 0.00 39.99 3.27
7714 8822 5.108385 AGCAATGTTTCTCTTGGTTTACG 57.892 39.130 0.00 0.00 29.29 3.18
7724 8832 4.992319 TCTCTTGGTTTACGTACATGGTTG 59.008 41.667 0.00 0.00 0.00 3.77
7741 8849 6.380846 ACATGGTTGTTGATGCCTATACAATT 59.619 34.615 0.00 0.00 33.57 2.32
7749 8857 7.777440 TGTTGATGCCTATACAATTGGAATGTA 59.223 33.333 10.83 0.00 37.64 2.29
7788 8897 7.148407 GGTTCACTGACAATCGATACTGAAAAT 60.148 37.037 0.00 0.00 0.00 1.82
7843 8952 7.719633 GCCCTATTTTGTGGAGTAAATCTATGA 59.280 37.037 0.00 0.00 0.00 2.15
7930 9039 4.502645 CGTGTTATCAGATTGCGTGTGATA 59.497 41.667 5.11 5.11 40.86 2.15
7951 9060 8.682710 GTGATAAAGGCATTGTAATTTGGACTA 58.317 33.333 0.00 0.00 0.00 2.59
8121 9234 5.885230 TTGTGATGATGCTGTTAAGGAAG 57.115 39.130 0.00 0.00 0.00 3.46
8212 9325 7.782049 TCTGTCACCGATGTCTAATTATCTTT 58.218 34.615 0.00 0.00 0.00 2.52
8392 9505 2.181777 CTGCAAGCTGGCATGCTG 59.818 61.111 18.14 16.80 43.97 4.41
8525 9646 9.191995 CCAAAATACCTGAGATTGTTTGTTTAC 57.808 33.333 0.00 0.00 0.00 2.01
8677 9801 5.708948 CAGGCTAGCACTAGATTGATCTAC 58.291 45.833 18.24 0.00 38.32 2.59
8786 9915 6.021468 GCGTGAATTCTTTTCGATTGTATTGG 60.021 38.462 7.05 0.00 0.00 3.16
8802 9931 1.175983 TTGGGCCGATGCGAAGTTTT 61.176 50.000 0.00 0.00 38.85 2.43
8826 9955 5.010282 GGATCAACCCTTTATGAACAGTGT 58.990 41.667 0.00 0.00 0.00 3.55
8907 10036 2.598394 GCAGAGCACAGGCCCAAA 60.598 61.111 0.00 0.00 42.56 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 0.042281 ACCTACCACCTACCCCAGTC 59.958 60.000 0.00 0.00 0.00 3.51
56 58 1.271325 TGTCGACCGTCCAACTACCTA 60.271 52.381 14.12 0.00 0.00 3.08
86 88 1.447489 TCCTCTCGTCGTCCGTCTC 60.447 63.158 0.00 0.00 37.94 3.36
89 91 3.117171 CGTCCTCTCGTCGTCCGT 61.117 66.667 0.00 0.00 37.94 4.69
120 122 0.878523 TGCGGTCAAACGAACAGAGG 60.879 55.000 0.00 0.00 35.47 3.69
127 129 1.377366 TTGGCTTTGCGGTCAAACGA 61.377 50.000 0.00 0.00 37.28 3.85
169 171 0.875059 GTTCTTTCTGGTCCGGCTTG 59.125 55.000 0.00 0.00 0.00 4.01
174 178 3.685836 AAAAACGTTCTTTCTGGTCCG 57.314 42.857 0.00 0.00 0.00 4.79
203 208 3.530260 CATCCCAATGCGCCACCC 61.530 66.667 4.18 0.00 0.00 4.61
211 217 2.680312 ACAGACGAGTCATCCCAATG 57.320 50.000 5.99 0.00 0.00 2.82
212 218 3.244561 ACAAACAGACGAGTCATCCCAAT 60.245 43.478 5.99 0.00 0.00 3.16
219 225 2.285083 CCCAAACAAACAGACGAGTCA 58.715 47.619 5.99 0.00 0.00 3.41
220 226 1.002792 GCCCAAACAAACAGACGAGTC 60.003 52.381 0.00 0.00 0.00 3.36
231 237 3.252554 AGTCTATTTGGGCCCAAACAA 57.747 42.857 44.79 34.12 46.80 2.83
232 238 2.990740 AGTCTATTTGGGCCCAAACA 57.009 45.000 44.79 36.03 46.80 2.83
246 252 3.614092 ACTCCAAATCGTCCGTAGTCTA 58.386 45.455 0.00 0.00 0.00 2.59
248 254 2.479219 GGACTCCAAATCGTCCGTAGTC 60.479 54.545 0.00 0.00 40.18 2.59
255 261 0.389948 ACGCAGGACTCCAAATCGTC 60.390 55.000 0.00 0.00 0.00 4.20
256 262 0.034896 AACGCAGGACTCCAAATCGT 59.965 50.000 0.00 0.00 0.00 3.73
260 266 0.250295 CTCCAACGCAGGACTCCAAA 60.250 55.000 0.00 0.00 33.19 3.28
261 267 1.371183 CTCCAACGCAGGACTCCAA 59.629 57.895 0.00 0.00 33.19 3.53
262 268 1.407656 AACTCCAACGCAGGACTCCA 61.408 55.000 0.00 0.00 33.19 3.86
263 269 0.951040 CAACTCCAACGCAGGACTCC 60.951 60.000 0.00 0.00 33.19 3.85
264 270 0.951040 CCAACTCCAACGCAGGACTC 60.951 60.000 0.00 0.00 33.19 3.36
285 294 2.420687 GGCATGAGGGTGAGGTCTTTAG 60.421 54.545 0.00 0.00 0.00 1.85
304 313 6.206829 GTCATCTTTATAATGTTACTGGGGGC 59.793 42.308 0.00 0.00 0.00 5.80
305 314 7.518188 AGTCATCTTTATAATGTTACTGGGGG 58.482 38.462 0.00 0.00 0.00 5.40
481 490 4.035814 TGATCTCACTGGACATGAAGGAT 58.964 43.478 0.00 0.00 0.00 3.24
494 707 3.243873 TGTTCAACGCTCTTGATCTCACT 60.244 43.478 0.00 0.00 0.00 3.41
662 875 7.902917 GCAACAAAGAAATTTAAACTCAACCAC 59.097 33.333 0.00 0.00 0.00 4.16
667 880 8.465999 TGAGAGCAACAAAGAAATTTAAACTCA 58.534 29.630 0.00 0.00 0.00 3.41
791 1007 8.811017 TGATCCATGGCAAAAGAAAATTTAGTA 58.189 29.630 6.96 0.00 0.00 1.82
794 1010 7.678837 AGTGATCCATGGCAAAAGAAAATTTA 58.321 30.769 6.96 0.00 0.00 1.40
795 1011 6.536447 AGTGATCCATGGCAAAAGAAAATTT 58.464 32.000 6.96 0.00 0.00 1.82
796 1012 6.117975 AGTGATCCATGGCAAAAGAAAATT 57.882 33.333 6.96 0.00 0.00 1.82
798 1014 6.664816 AGATAGTGATCCATGGCAAAAGAAAA 59.335 34.615 6.96 0.00 31.81 2.29
802 1024 6.293081 CGTAAGATAGTGATCCATGGCAAAAG 60.293 42.308 6.96 0.00 43.02 2.27
833 1055 7.222999 GGTCGGTGAGATAGTGATTTTTCTAAG 59.777 40.741 0.00 0.00 0.00 2.18
852 1080 1.199097 GGCAATTTACAGTGGTCGGTG 59.801 52.381 0.00 0.00 0.00 4.94
856 1084 1.737793 CGAGGGCAATTTACAGTGGTC 59.262 52.381 0.00 0.00 0.00 4.02
876 1104 1.635663 CGATCCGACCAAACTGCACC 61.636 60.000 0.00 0.00 0.00 5.01
882 1138 2.433664 ACCGCGATCCGACCAAAC 60.434 61.111 8.23 0.00 40.02 2.93
884 1140 3.066190 AGACCGCGATCCGACCAA 61.066 61.111 8.23 0.00 40.02 3.67
1126 1383 4.988598 CCAGTTCAGGGTGCGCGT 62.989 66.667 8.43 0.00 0.00 6.01
1281 1538 1.006281 TCCTACCTTCGCTACCAGGAA 59.994 52.381 0.00 0.00 33.90 3.36
1352 1609 1.739466 GATCTTGGACTGCATTTGCGA 59.261 47.619 0.00 0.00 45.83 5.10
1528 1785 5.353394 TGTACATCAAGTCTGGGGAATAC 57.647 43.478 0.00 0.00 0.00 1.89
1564 1821 4.702131 GGTGGAATCAACTTACTTCTGCAT 59.298 41.667 0.00 0.00 0.00 3.96
1916 2173 7.011763 TCAGCATGAATATCTTCTACAGTTTGC 59.988 37.037 0.00 0.00 45.97 3.68
2250 2510 1.262950 TCAGTCGGCAATGAAACAACG 59.737 47.619 0.00 0.00 0.00 4.10
2258 2518 3.495193 CAAGAATTGTCAGTCGGCAATG 58.505 45.455 0.00 0.00 42.34 2.82
2267 2527 5.008415 GGATATGCAGACCAAGAATTGTCAG 59.992 44.000 0.00 0.00 46.99 3.51
2403 2670 0.710567 CACTAACAACTCTGCTCGCG 59.289 55.000 0.00 0.00 0.00 5.87
2422 2689 7.393841 AGAGCACTAGATATTTCCCGTATAC 57.606 40.000 0.00 0.00 0.00 1.47
2751 3018 3.924114 TTCTCAAAGTTGGTCTCCACA 57.076 42.857 0.00 0.00 30.78 4.17
2821 3088 7.013178 TCACACGGCAATATGAATGAATTATGT 59.987 33.333 0.00 0.00 0.00 2.29
2991 3258 4.072131 TCCTTCATTTGGTGTAGAGCAAC 58.928 43.478 3.69 0.00 39.28 4.17
3149 3416 8.478066 ACTCACTTGATAGCATAGTTCATTACA 58.522 33.333 0.00 0.00 0.00 2.41
3379 3646 5.221581 TGGTTGTAACTCTTTCTACCAGGAC 60.222 44.000 0.00 0.00 33.63 3.85
3432 3700 2.282391 TGAAACCGGCTGCTGCAT 60.282 55.556 17.89 0.00 41.91 3.96
3633 3906 1.546323 CCTCACAACAACCTCCTGCAT 60.546 52.381 0.00 0.00 0.00 3.96
3676 3949 6.529220 AGACTAGTAGATCCCAATGCAATTC 58.471 40.000 3.59 0.00 31.22 2.17
3844 4117 4.444056 GCAAAACAACACGCAATTAGATGT 59.556 37.500 0.00 0.00 0.00 3.06
3867 4140 4.738252 GCCTTCTTGGTGTTTTCTTTAACG 59.262 41.667 0.00 0.00 38.35 3.18
3898 4171 1.608717 TTTTGTTTGTGGGCGCAGGT 61.609 50.000 10.83 0.00 0.00 4.00
4012 4285 0.037697 CGGACACGGACAAATGAGGA 60.038 55.000 0.00 0.00 36.18 3.71
4085 4358 5.975344 GGAATCGAAGTACGTGTATTGATCA 59.025 40.000 0.00 0.00 43.13 2.92
4153 4426 3.528370 CTCACCTCGCCCTACCGG 61.528 72.222 0.00 0.00 0.00 5.28
4154 4427 3.528370 CCTCACCTCGCCCTACCG 61.528 72.222 0.00 0.00 0.00 4.02
4196 4469 8.221100 CGATCTGTATACATAAAACCCAAATCG 58.779 37.037 5.91 0.00 0.00 3.34
4254 4527 1.743623 CACGGCCCAATAGAACGCA 60.744 57.895 0.00 0.00 0.00 5.24
4349 4622 0.461961 GCAACTAGCCCTGATCGAGT 59.538 55.000 0.00 0.00 37.23 4.18
4382 4655 3.801114 ATTGTGCAGTCACTATCGCTA 57.199 42.857 0.00 0.00 43.49 4.26
4394 4667 3.207474 GGCAACTACAGAATTGTGCAG 57.793 47.619 1.83 1.57 38.23 4.41
4504 4780 7.495279 ACTTTGCAAATGTAAGAGAAAATGCAA 59.505 29.630 13.23 5.81 46.96 4.08
4513 4789 4.379793 GCGAACACTTTGCAAATGTAAGAG 59.620 41.667 13.23 1.02 39.91 2.85
4520 4796 4.869861 AGAAAAAGCGAACACTTTGCAAAT 59.130 33.333 13.23 0.00 42.69 2.32
4534 4810 8.551205 TCTATTCTATGCATACAAGAAAAAGCG 58.449 33.333 13.06 3.07 33.26 4.68
4649 5357 4.798387 GCGGAAATGTGACCAATCAATAAC 59.202 41.667 0.00 0.00 36.31 1.89
4793 5502 3.593442 TCAGTGGTGGAGGACAATTTT 57.407 42.857 0.00 0.00 0.00 1.82
4794 5503 3.331889 AGATCAGTGGTGGAGGACAATTT 59.668 43.478 0.00 0.00 0.00 1.82
4795 5504 2.915604 AGATCAGTGGTGGAGGACAATT 59.084 45.455 0.00 0.00 0.00 2.32
4796 5505 2.238144 CAGATCAGTGGTGGAGGACAAT 59.762 50.000 0.00 0.00 0.00 2.71
4797 5506 1.625315 CAGATCAGTGGTGGAGGACAA 59.375 52.381 0.00 0.00 0.00 3.18
4799 5508 0.539051 CCAGATCAGTGGTGGAGGAC 59.461 60.000 0.00 0.00 32.60 3.85
4801 5510 2.996985 TCCAGATCAGTGGTGGAGG 58.003 57.895 5.87 0.00 38.88 4.30
4803 5512 2.557555 ATCTCCAGATCAGTGGTGGA 57.442 50.000 8.84 8.84 38.88 4.02
4804 5513 2.036992 GCTATCTCCAGATCAGTGGTGG 59.963 54.545 0.00 0.00 38.88 4.61
4805 5514 2.697229 TGCTATCTCCAGATCAGTGGTG 59.303 50.000 0.00 0.00 38.88 4.17
4806 5515 3.037851 TGCTATCTCCAGATCAGTGGT 57.962 47.619 0.00 0.00 38.88 4.16
4860 5670 6.228258 AGAACATGTCGTTATTGTGGTAGTT 58.772 36.000 0.00 0.00 38.19 2.24
5091 5901 1.731093 CAAACCCAAGCCGTTCGTT 59.269 52.632 0.00 0.00 0.00 3.85
5220 6030 1.894756 CGCCAAAACCCTCGTGGAA 60.895 57.895 4.76 0.00 38.00 3.53
5265 6098 1.492133 CCCTGGCCTCCAAAGAGTCA 61.492 60.000 3.32 0.00 38.58 3.41
5299 6132 1.930908 GAGGATCCGGTCGTTCGTGT 61.931 60.000 5.98 0.00 0.00 4.49
5396 6229 0.389166 CTCCGAGGTTGAGACACAGC 60.389 60.000 0.00 0.00 31.26 4.40
5468 6301 0.743701 GACGTCGGCCTCAGAGTCTA 60.744 60.000 0.00 0.00 0.00 2.59
5510 6343 2.297597 GCTCTATCATCGCAACCCTAGT 59.702 50.000 0.00 0.00 0.00 2.57
5513 6346 0.032678 CGCTCTATCATCGCAACCCT 59.967 55.000 0.00 0.00 0.00 4.34
5523 6356 0.450583 GTCGTGTGTCCGCTCTATCA 59.549 55.000 0.00 0.00 0.00 2.15
5664 6510 1.167155 GGCATCGACTAGGAGCTCGA 61.167 60.000 7.83 5.74 42.79 4.04
5790 6636 3.175710 ACCCTGGACGCAACCCTT 61.176 61.111 0.00 0.00 0.00 3.95
5840 6686 1.264295 GTCAAGTTCGGTCTACCCCT 58.736 55.000 0.00 0.00 0.00 4.79
5871 6717 7.619698 TCCAGTCCTTCATATCTCTCTTTACAA 59.380 37.037 0.00 0.00 0.00 2.41
5885 6731 5.026121 TCTGTTGATACTCCAGTCCTTCAT 58.974 41.667 0.00 0.00 0.00 2.57
5904 6750 4.141390 CCCTATCCATGGCTAGTTTTCTGT 60.141 45.833 18.93 0.00 0.00 3.41
5995 6841 4.843728 CAAACAAGTTGGGATAGGCTAGA 58.156 43.478 7.96 0.00 33.18 2.43
6027 6873 3.988819 ACACAACAACAACAACAAAGCT 58.011 36.364 0.00 0.00 0.00 3.74
6044 6893 1.369692 CCACCCTAGACGCAACACA 59.630 57.895 0.00 0.00 0.00 3.72
6045 6894 1.375523 CCCACCCTAGACGCAACAC 60.376 63.158 0.00 0.00 0.00 3.32
6046 6895 2.589157 CCCCACCCTAGACGCAACA 61.589 63.158 0.00 0.00 0.00 3.33
6055 6904 1.231018 CAATCCCAATCCCCACCCTA 58.769 55.000 0.00 0.00 0.00 3.53
6062 6911 3.198417 AGCACAAAATCAATCCCAATCCC 59.802 43.478 0.00 0.00 0.00 3.85
6073 6922 2.821378 CCATCCTGACAGCACAAAATCA 59.179 45.455 0.00 0.00 0.00 2.57
6167 7016 2.505819 CCACTACCTAGCCCAAATGTCT 59.494 50.000 0.00 0.00 0.00 3.41
6282 7358 8.856490 TTCTTTTGCTGTTTTGTTAGAGAATC 57.144 30.769 0.00 0.00 0.00 2.52
6283 7359 8.686334 TCTTCTTTTGCTGTTTTGTTAGAGAAT 58.314 29.630 0.00 0.00 0.00 2.40
6284 7360 8.050778 TCTTCTTTTGCTGTTTTGTTAGAGAA 57.949 30.769 0.00 0.00 0.00 2.87
6285 7361 7.624360 TCTTCTTTTGCTGTTTTGTTAGAGA 57.376 32.000 0.00 0.00 0.00 3.10
6286 7362 7.433425 CCTTCTTCTTTTGCTGTTTTGTTAGAG 59.567 37.037 0.00 0.00 0.00 2.43
6287 7363 7.257722 CCTTCTTCTTTTGCTGTTTTGTTAGA 58.742 34.615 0.00 0.00 0.00 2.10
6562 7641 4.999311 GGCTCCTTTGAAATGCAAGATTTT 59.001 37.500 0.00 0.00 37.87 1.82
6662 7764 1.808945 GATGCCTTTATCTGATGCCGG 59.191 52.381 0.00 0.00 0.00 6.13
6679 7781 2.871022 CTCGCTCCAAAGATTGAGGATG 59.129 50.000 0.00 0.00 0.00 3.51
6866 7968 6.209391 CCAAGTTCTGGTTAGATGGTTTGATT 59.791 38.462 0.00 0.00 40.78 2.57
6948 8051 6.096846 AGTTTAAACTCAACTGCAACAGGAAT 59.903 34.615 15.22 0.00 32.65 3.01
7229 8333 1.077716 GGCGGGAAACTGGTGCTAT 60.078 57.895 0.00 0.00 37.13 2.97
7301 8405 5.007724 CGGATTTGGGTTTAAGACTATCAGC 59.992 44.000 0.00 0.00 0.00 4.26
7487 8593 1.266718 GCATTGCAACTCTTCCGTGAA 59.733 47.619 0.00 0.00 0.00 3.18
7714 8822 5.820423 TGTATAGGCATCAACAACCATGTAC 59.180 40.000 0.00 0.00 39.40 2.90
7724 8832 7.042797 ACATTCCAATTGTATAGGCATCAAC 57.957 36.000 4.43 0.00 0.00 3.18
7741 8849 9.527157 TGAACCTTTCTGAATTATTACATTCCA 57.473 29.630 0.00 0.00 32.86 3.53
7749 8857 8.463930 TTGTCAGTGAACCTTTCTGAATTATT 57.536 30.769 0.00 0.00 39.42 1.40
7788 8897 7.181569 TGATGTTCTATGGACTACATTGTGA 57.818 36.000 0.00 0.00 41.03 3.58
7930 9039 6.572314 GCTGTAGTCCAAATTACAATGCCTTT 60.572 38.462 0.00 0.00 28.45 3.11
7951 9060 3.213206 TGTTGAGGTGAATCTTGCTGT 57.787 42.857 0.00 0.00 0.00 4.40
7988 9099 9.208022 CTTAAATCATACTATTGATCCGCTTCA 57.792 33.333 0.00 0.00 35.29 3.02
8043 9154 1.068753 AAGCCGCATCGATGAGAGG 59.931 57.895 29.20 25.25 0.00 3.69
8121 9234 5.914085 ATGCAGCGTCAGTATAAGAAATC 57.086 39.130 0.00 0.00 0.00 2.17
8212 9325 0.320374 CGGTACAGCCAGGAACTTCA 59.680 55.000 0.00 0.00 34.60 3.02
8392 9505 1.949465 AACTGAAGAACGGTCCACAC 58.051 50.000 0.00 0.00 37.07 3.82
8525 9646 8.877779 TGGTTTCTTGAAATTTGTTTGTACATG 58.122 29.630 0.00 0.00 33.44 3.21
8677 9801 2.916702 TCGACCCATCATTCCTCATG 57.083 50.000 0.00 0.00 0.00 3.07
8733 9861 5.180868 ACTCTTGTCAACTGATGCAGAATTC 59.819 40.000 0.00 0.00 35.18 2.17
8751 9879 0.721718 GAATTCACGCCCGACTCTTG 59.278 55.000 0.00 0.00 0.00 3.02
8786 9915 1.154035 CCAAAACTTCGCATCGGCC 60.154 57.895 0.00 0.00 36.38 6.13
8802 9931 5.009631 CACTGTTCATAAAGGGTTGATCCA 58.990 41.667 0.00 0.00 38.11 3.41
9042 10181 0.698886 TCGGGGTAGAGGTAGGGCTA 60.699 60.000 0.00 0.00 0.00 3.93
9043 10182 2.009208 CTCGGGGTAGAGGTAGGGCT 62.009 65.000 0.00 0.00 34.74 5.19
9044 10183 1.531128 CTCGGGGTAGAGGTAGGGC 60.531 68.421 0.00 0.00 34.74 5.19
9045 10184 1.531128 GCTCGGGGTAGAGGTAGGG 60.531 68.421 0.00 0.00 38.63 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.