Multiple sequence alignment - TraesCS5B01G130500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G130500 chr5B 100.000 3638 0 0 1 3638 242542601 242546238 0.000000e+00 6719.0
1 TraesCS5B01G130500 chr5B 95.788 1282 18 23 1823 3070 239160752 239159473 0.000000e+00 2036.0
2 TraesCS5B01G130500 chr5B 96.032 504 18 2 3136 3638 239159099 239158597 0.000000e+00 819.0
3 TraesCS5B01G130500 chr5B 96.205 448 4 4 700 1140 239171658 239171217 0.000000e+00 721.0
4 TraesCS5B01G130500 chr5B 92.020 401 26 4 1 395 239200809 239200409 3.170000e-155 558.0
5 TraesCS5B01G130500 chr5B 97.753 178 4 0 532 709 239173139 239172962 1.270000e-79 307.0
6 TraesCS5B01G130500 chr5B 99.180 122 1 0 419 540 239176980 239176859 1.700000e-53 220.0
7 TraesCS5B01G130500 chr5D 96.865 2392 60 4 417 2807 220096791 220099168 0.000000e+00 3988.0
8 TraesCS5B01G130500 chr5D 91.959 485 36 2 3157 3638 220099278 220099762 0.000000e+00 676.0
9 TraesCS5B01G130500 chr5A 95.993 2421 63 12 417 2807 293864050 293866466 0.000000e+00 3903.0
10 TraesCS5B01G130500 chr5A 93.224 487 26 6 3157 3638 293866580 293867064 0.000000e+00 710.0
11 TraesCS5B01G130500 chrUn 93.269 208 14 0 2913 3120 277980281 277980074 1.270000e-79 307.0
12 TraesCS5B01G130500 chr7D 80.505 277 45 5 3364 3638 100660828 100660559 1.710000e-48 204.0
13 TraesCS5B01G130500 chr6A 83.673 98 15 1 3359 3456 9360778 9360874 1.390000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G130500 chr5B 242542601 242546238 3637 False 6719.0 6719 100.000000 1 3638 1 chr5B.!!$F1 3637
1 TraesCS5B01G130500 chr5B 239158597 239160752 2155 True 1427.5 2036 95.910000 1823 3638 2 chr5B.!!$R2 1815
2 TraesCS5B01G130500 chr5B 239171217 239176980 5763 True 416.0 721 97.712667 419 1140 3 chr5B.!!$R3 721
3 TraesCS5B01G130500 chr5D 220096791 220099762 2971 False 2332.0 3988 94.412000 417 3638 2 chr5D.!!$F1 3221
4 TraesCS5B01G130500 chr5A 293864050 293867064 3014 False 2306.5 3903 94.608500 417 3638 2 chr5A.!!$F1 3221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
403 404 0.030638 GCCGCTGACACAAACACATT 59.969 50.000 0.00 0.00 0.00 2.71 F
904 5955 0.679002 GGTTCCCTAAAACCGCTCCC 60.679 60.000 0.00 0.00 39.40 4.30 F
1309 6382 1.466697 GGTTCGACGAGCTCTTCTCAG 60.467 57.143 17.19 3.33 41.98 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1617 6690 0.668535 CCTGTATGATCCTCGCGACA 59.331 55.000 3.71 1.07 0.00 4.35 R
1799 6872 1.135402 CCTTACCGGATTTTGCAGCAC 60.135 52.381 9.46 0.00 33.16 4.40 R
3074 8224 1.349627 CGTCACATGAAGCATCGGC 59.650 57.895 0.00 0.00 41.61 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.636768 GGAACGGAAGCTCCAAATTG 57.363 50.000 0.00 0.00 45.64 2.32
20 21 1.202348 GGAACGGAAGCTCCAAATTGG 59.798 52.381 5.48 5.48 45.64 3.16
21 22 2.159382 GAACGGAAGCTCCAAATTGGA 58.841 47.619 14.73 14.73 45.98 3.53
32 33 4.156455 TCCAAATTGGAGGCTCTGATAC 57.844 45.455 11.23 0.00 42.67 2.24
33 34 3.117888 TCCAAATTGGAGGCTCTGATACC 60.118 47.826 11.23 0.00 42.67 2.73
34 35 3.371917 CCAAATTGGAGGCTCTGATACCA 60.372 47.826 15.23 0.00 40.96 3.25
35 36 4.272489 CAAATTGGAGGCTCTGATACCAA 58.728 43.478 15.23 9.97 43.23 3.67
37 38 4.803329 ATTGGAGGCTCTGATACCAATT 57.197 40.909 15.23 0.00 45.25 2.32
38 39 3.565764 TGGAGGCTCTGATACCAATTG 57.434 47.619 15.23 0.00 0.00 2.32
39 40 2.846206 TGGAGGCTCTGATACCAATTGT 59.154 45.455 15.23 0.00 0.00 2.71
40 41 3.209410 GGAGGCTCTGATACCAATTGTG 58.791 50.000 15.23 0.00 0.00 3.33
41 42 3.118261 GGAGGCTCTGATACCAATTGTGA 60.118 47.826 15.23 0.00 0.00 3.58
42 43 4.125703 GAGGCTCTGATACCAATTGTGAG 58.874 47.826 7.40 3.68 0.00 3.51
43 44 3.776969 AGGCTCTGATACCAATTGTGAGA 59.223 43.478 4.43 0.00 0.00 3.27
44 45 4.225942 AGGCTCTGATACCAATTGTGAGAA 59.774 41.667 4.43 0.00 0.00 2.87
45 46 4.943705 GGCTCTGATACCAATTGTGAGAAA 59.056 41.667 4.43 0.00 0.00 2.52
46 47 5.591877 GGCTCTGATACCAATTGTGAGAAAT 59.408 40.000 4.43 0.00 0.00 2.17
47 48 6.096001 GGCTCTGATACCAATTGTGAGAAATT 59.904 38.462 4.43 0.00 0.00 1.82
48 49 7.192232 GCTCTGATACCAATTGTGAGAAATTC 58.808 38.462 4.43 0.00 0.00 2.17
49 50 7.307493 TCTGATACCAATTGTGAGAAATTCG 57.693 36.000 4.43 0.00 0.00 3.34
50 51 5.879237 TGATACCAATTGTGAGAAATTCGC 58.121 37.500 4.43 0.00 36.83 4.70
51 52 5.647658 TGATACCAATTGTGAGAAATTCGCT 59.352 36.000 4.43 0.00 37.22 4.93
52 53 4.425577 ACCAATTGTGAGAAATTCGCTC 57.574 40.909 4.43 0.00 37.22 5.03
53 54 3.120199 ACCAATTGTGAGAAATTCGCTCG 60.120 43.478 4.43 0.00 37.22 5.03
54 55 3.125146 CCAATTGTGAGAAATTCGCTCGA 59.875 43.478 4.43 0.00 37.22 4.04
55 56 4.201851 CCAATTGTGAGAAATTCGCTCGAT 60.202 41.667 4.43 0.00 37.22 3.59
56 57 4.785669 ATTGTGAGAAATTCGCTCGATC 57.214 40.909 0.00 0.00 37.22 3.69
57 58 3.510388 TGTGAGAAATTCGCTCGATCT 57.490 42.857 0.00 0.00 37.22 2.75
58 59 4.632538 TGTGAGAAATTCGCTCGATCTA 57.367 40.909 0.00 0.00 37.22 1.98
59 60 4.602006 TGTGAGAAATTCGCTCGATCTAG 58.398 43.478 0.00 0.00 37.22 2.43
60 61 4.096532 TGTGAGAAATTCGCTCGATCTAGT 59.903 41.667 0.00 0.00 37.22 2.57
61 62 4.673311 GTGAGAAATTCGCTCGATCTAGTC 59.327 45.833 0.00 0.00 35.15 2.59
62 63 4.223659 GAGAAATTCGCTCGATCTAGTCC 58.776 47.826 0.00 0.00 0.00 3.85
63 64 3.886505 AGAAATTCGCTCGATCTAGTCCT 59.113 43.478 0.00 0.00 0.00 3.85
64 65 5.064558 AGAAATTCGCTCGATCTAGTCCTA 58.935 41.667 0.00 0.00 0.00 2.94
65 66 5.180492 AGAAATTCGCTCGATCTAGTCCTAG 59.820 44.000 0.00 0.00 34.56 3.02
66 67 1.798283 TCGCTCGATCTAGTCCTAGC 58.202 55.000 0.00 0.00 33.32 3.42
67 68 1.345089 TCGCTCGATCTAGTCCTAGCT 59.655 52.381 0.00 0.00 32.72 3.32
68 69 2.561858 TCGCTCGATCTAGTCCTAGCTA 59.438 50.000 0.00 0.00 32.72 3.32
69 70 2.927477 CGCTCGATCTAGTCCTAGCTAG 59.073 54.545 14.20 14.20 39.70 3.42
70 71 3.267483 GCTCGATCTAGTCCTAGCTAGG 58.733 54.545 30.94 30.94 45.02 3.02
71 72 3.869065 CTCGATCTAGTCCTAGCTAGGG 58.131 54.545 34.43 20.88 43.79 3.53
72 73 3.249752 TCGATCTAGTCCTAGCTAGGGT 58.750 50.000 34.43 25.08 43.79 4.34
73 74 3.651904 TCGATCTAGTCCTAGCTAGGGTT 59.348 47.826 34.43 25.19 43.79 4.11
74 75 4.004982 CGATCTAGTCCTAGCTAGGGTTC 58.995 52.174 34.43 24.63 43.79 3.62
75 76 4.263156 CGATCTAGTCCTAGCTAGGGTTCT 60.263 50.000 34.43 28.74 43.79 3.01
76 77 5.637127 GATCTAGTCCTAGCTAGGGTTCTT 58.363 45.833 34.43 19.42 43.79 2.52
77 78 4.794334 TCTAGTCCTAGCTAGGGTTCTTG 58.206 47.826 34.43 26.92 43.79 3.02
78 79 2.753247 AGTCCTAGCTAGGGTTCTTGG 58.247 52.381 34.43 12.04 43.79 3.61
79 80 2.315155 AGTCCTAGCTAGGGTTCTTGGA 59.685 50.000 34.43 14.16 43.79 3.53
80 81 2.696187 GTCCTAGCTAGGGTTCTTGGAG 59.304 54.545 34.43 9.59 43.79 3.86
81 82 2.043227 CCTAGCTAGGGTTCTTGGAGG 58.957 57.143 29.47 4.05 39.86 4.30
82 83 2.359355 CCTAGCTAGGGTTCTTGGAGGA 60.359 54.545 29.47 0.00 39.86 3.71
83 84 2.344093 AGCTAGGGTTCTTGGAGGAA 57.656 50.000 0.00 0.00 0.00 3.36
84 85 2.192263 AGCTAGGGTTCTTGGAGGAAG 58.808 52.381 0.00 0.00 0.00 3.46
85 86 1.210722 GCTAGGGTTCTTGGAGGAAGG 59.789 57.143 0.00 0.00 31.85 3.46
86 87 1.840635 CTAGGGTTCTTGGAGGAAGGG 59.159 57.143 0.00 0.00 31.85 3.95
87 88 0.846870 AGGGTTCTTGGAGGAAGGGG 60.847 60.000 0.00 0.00 31.85 4.79
88 89 0.845102 GGGTTCTTGGAGGAAGGGGA 60.845 60.000 0.00 0.00 31.85 4.81
89 90 1.073098 GGTTCTTGGAGGAAGGGGAA 58.927 55.000 0.00 0.00 31.85 3.97
90 91 1.641192 GGTTCTTGGAGGAAGGGGAAT 59.359 52.381 0.00 0.00 31.85 3.01
91 92 2.043115 GGTTCTTGGAGGAAGGGGAATT 59.957 50.000 0.00 0.00 31.85 2.17
92 93 3.502303 GGTTCTTGGAGGAAGGGGAATTT 60.502 47.826 0.00 0.00 31.85 1.82
93 94 3.456380 TCTTGGAGGAAGGGGAATTTG 57.544 47.619 0.00 0.00 31.85 2.32
94 95 2.993146 TCTTGGAGGAAGGGGAATTTGA 59.007 45.455 0.00 0.00 31.85 2.69
95 96 3.597868 TCTTGGAGGAAGGGGAATTTGAT 59.402 43.478 0.00 0.00 31.85 2.57
96 97 4.045846 TCTTGGAGGAAGGGGAATTTGATT 59.954 41.667 0.00 0.00 31.85 2.57
97 98 4.418395 TGGAGGAAGGGGAATTTGATTT 57.582 40.909 0.00 0.00 0.00 2.17
98 99 5.544441 TGGAGGAAGGGGAATTTGATTTA 57.456 39.130 0.00 0.00 0.00 1.40
99 100 5.269189 TGGAGGAAGGGGAATTTGATTTAC 58.731 41.667 0.00 0.00 0.00 2.01
100 101 5.016245 TGGAGGAAGGGGAATTTGATTTACT 59.984 40.000 0.00 0.00 0.00 2.24
101 102 5.360999 GGAGGAAGGGGAATTTGATTTACTG 59.639 44.000 0.00 0.00 0.00 2.74
102 103 5.903923 AGGAAGGGGAATTTGATTTACTGT 58.096 37.500 0.00 0.00 0.00 3.55
103 104 7.039722 AGGAAGGGGAATTTGATTTACTGTA 57.960 36.000 0.00 0.00 0.00 2.74
104 105 7.119387 AGGAAGGGGAATTTGATTTACTGTAG 58.881 38.462 0.00 0.00 0.00 2.74
105 106 6.183360 GGAAGGGGAATTTGATTTACTGTAGC 60.183 42.308 0.00 0.00 0.00 3.58
106 107 6.079712 AGGGGAATTTGATTTACTGTAGCT 57.920 37.500 0.00 0.00 0.00 3.32
107 108 6.494059 AGGGGAATTTGATTTACTGTAGCTT 58.506 36.000 0.00 0.00 0.00 3.74
108 109 6.378280 AGGGGAATTTGATTTACTGTAGCTTG 59.622 38.462 0.00 0.00 0.00 4.01
109 110 6.152831 GGGGAATTTGATTTACTGTAGCTTGT 59.847 38.462 0.00 0.00 0.00 3.16
110 111 7.251281 GGGAATTTGATTTACTGTAGCTTGTC 58.749 38.462 0.00 0.00 0.00 3.18
111 112 7.251281 GGAATTTGATTTACTGTAGCTTGTCC 58.749 38.462 0.00 0.00 0.00 4.02
112 113 7.094377 GGAATTTGATTTACTGTAGCTTGTCCA 60.094 37.037 0.00 0.00 0.00 4.02
113 114 6.554334 TTTGATTTACTGTAGCTTGTCCAC 57.446 37.500 0.00 0.00 0.00 4.02
114 115 5.483685 TGATTTACTGTAGCTTGTCCACT 57.516 39.130 0.00 0.00 0.00 4.00
115 116 5.865085 TGATTTACTGTAGCTTGTCCACTT 58.135 37.500 0.00 0.00 0.00 3.16
116 117 6.999950 TGATTTACTGTAGCTTGTCCACTTA 58.000 36.000 0.00 0.00 0.00 2.24
117 118 7.446769 TGATTTACTGTAGCTTGTCCACTTAA 58.553 34.615 0.00 0.00 0.00 1.85
118 119 8.100791 TGATTTACTGTAGCTTGTCCACTTAAT 58.899 33.333 0.00 0.00 0.00 1.40
119 120 7.900782 TTTACTGTAGCTTGTCCACTTAATC 57.099 36.000 0.00 0.00 0.00 1.75
120 121 4.833390 ACTGTAGCTTGTCCACTTAATCC 58.167 43.478 0.00 0.00 0.00 3.01
121 122 4.532521 ACTGTAGCTTGTCCACTTAATCCT 59.467 41.667 0.00 0.00 0.00 3.24
122 123 5.086104 TGTAGCTTGTCCACTTAATCCTC 57.914 43.478 0.00 0.00 0.00 3.71
123 124 4.530553 TGTAGCTTGTCCACTTAATCCTCA 59.469 41.667 0.00 0.00 0.00 3.86
124 125 3.944087 AGCTTGTCCACTTAATCCTCAC 58.056 45.455 0.00 0.00 0.00 3.51
125 126 3.327757 AGCTTGTCCACTTAATCCTCACA 59.672 43.478 0.00 0.00 0.00 3.58
126 127 4.072131 GCTTGTCCACTTAATCCTCACAA 58.928 43.478 0.00 0.00 0.00 3.33
127 128 4.083271 GCTTGTCCACTTAATCCTCACAAC 60.083 45.833 0.00 0.00 0.00 3.32
128 129 4.974645 TGTCCACTTAATCCTCACAACT 57.025 40.909 0.00 0.00 0.00 3.16
129 130 6.428083 TTGTCCACTTAATCCTCACAACTA 57.572 37.500 0.00 0.00 0.00 2.24
130 131 6.620877 TGTCCACTTAATCCTCACAACTAT 57.379 37.500 0.00 0.00 0.00 2.12
131 132 7.727578 TGTCCACTTAATCCTCACAACTATA 57.272 36.000 0.00 0.00 0.00 1.31
132 133 7.782049 TGTCCACTTAATCCTCACAACTATAG 58.218 38.462 0.00 0.00 0.00 1.31
133 134 7.147724 TGTCCACTTAATCCTCACAACTATAGG 60.148 40.741 4.43 0.00 0.00 2.57
134 135 6.901300 TCCACTTAATCCTCACAACTATAGGT 59.099 38.462 4.43 0.00 0.00 3.08
135 136 8.063153 TCCACTTAATCCTCACAACTATAGGTA 58.937 37.037 4.43 0.00 0.00 3.08
136 137 8.142551 CCACTTAATCCTCACAACTATAGGTAC 58.857 40.741 4.43 0.00 0.00 3.34
137 138 7.861372 CACTTAATCCTCACAACTATAGGTACG 59.139 40.741 4.43 0.00 0.00 3.67
138 139 7.776969 ACTTAATCCTCACAACTATAGGTACGA 59.223 37.037 4.43 0.00 0.00 3.43
139 140 6.636562 AATCCTCACAACTATAGGTACGAG 57.363 41.667 4.43 6.67 0.00 4.18
140 141 3.881688 TCCTCACAACTATAGGTACGAGC 59.118 47.826 4.43 0.00 0.00 5.03
141 142 3.630769 CCTCACAACTATAGGTACGAGCA 59.369 47.826 4.43 0.00 0.00 4.26
142 143 4.497674 CCTCACAACTATAGGTACGAGCAC 60.498 50.000 4.43 0.00 0.00 4.40
143 144 4.011698 TCACAACTATAGGTACGAGCACA 58.988 43.478 4.43 0.00 0.00 4.57
144 145 4.460034 TCACAACTATAGGTACGAGCACAA 59.540 41.667 4.43 0.00 0.00 3.33
145 146 4.561606 CACAACTATAGGTACGAGCACAAC 59.438 45.833 4.43 0.00 0.00 3.32
146 147 4.461781 ACAACTATAGGTACGAGCACAACT 59.538 41.667 4.43 0.00 0.00 3.16
147 148 4.897025 ACTATAGGTACGAGCACAACTC 57.103 45.455 4.43 0.00 42.47 3.01
148 149 4.525024 ACTATAGGTACGAGCACAACTCT 58.475 43.478 4.43 0.00 43.85 3.24
149 150 4.575645 ACTATAGGTACGAGCACAACTCTC 59.424 45.833 4.43 0.00 43.85 3.20
153 154 2.651361 CGAGCACAACTCTCGGGT 59.349 61.111 4.66 0.00 46.82 5.28
154 155 1.734477 CGAGCACAACTCTCGGGTG 60.734 63.158 4.66 0.00 46.82 4.61
155 156 1.666011 GAGCACAACTCTCGGGTGA 59.334 57.895 0.00 0.00 42.62 4.02
156 157 0.033504 GAGCACAACTCTCGGGTGAA 59.966 55.000 0.00 0.00 42.62 3.18
157 158 0.034059 AGCACAACTCTCGGGTGAAG 59.966 55.000 0.00 0.00 35.89 3.02
158 159 1.569479 GCACAACTCTCGGGTGAAGC 61.569 60.000 0.00 0.00 35.89 3.86
159 160 0.951040 CACAACTCTCGGGTGAAGCC 60.951 60.000 0.00 0.00 35.89 4.35
160 161 1.738099 CAACTCTCGGGTGAAGCCG 60.738 63.158 14.59 14.59 38.44 5.52
161 162 3.591254 AACTCTCGGGTGAAGCCGC 62.591 63.158 15.85 0.00 38.44 6.53
162 163 4.821589 CTCTCGGGTGAAGCCGCC 62.822 72.222 15.85 0.00 42.20 6.13
164 165 4.394712 CTCGGGTGAAGCCGCCTT 62.395 66.667 15.85 0.00 42.54 4.35
165 166 4.388499 TCGGGTGAAGCCGCCTTC 62.388 66.667 15.85 0.00 46.15 3.46
168 169 4.699522 GGTGAAGCCGCCTTCCGT 62.700 66.667 3.36 0.00 45.53 4.69
169 170 2.668550 GTGAAGCCGCCTTCCGTT 60.669 61.111 3.36 0.00 45.53 4.44
170 171 2.358247 TGAAGCCGCCTTCCGTTC 60.358 61.111 3.36 0.00 45.53 3.95
171 172 3.125573 GAAGCCGCCTTCCGTTCC 61.126 66.667 0.00 0.00 41.30 3.62
172 173 3.894547 GAAGCCGCCTTCCGTTCCA 62.895 63.158 0.00 0.00 41.30 3.53
173 174 3.485346 AAGCCGCCTTCCGTTCCAA 62.485 57.895 0.00 0.00 34.38 3.53
174 175 3.431725 GCCGCCTTCCGTTCCAAG 61.432 66.667 0.00 0.00 34.38 3.61
175 176 3.431725 CCGCCTTCCGTTCCAAGC 61.432 66.667 0.00 0.00 34.38 4.01
176 177 2.358737 CGCCTTCCGTTCCAAGCT 60.359 61.111 0.00 0.00 0.00 3.74
177 178 1.079405 CGCCTTCCGTTCCAAGCTA 60.079 57.895 0.00 0.00 0.00 3.32
178 179 0.672401 CGCCTTCCGTTCCAAGCTAA 60.672 55.000 0.00 0.00 0.00 3.09
179 180 1.530323 GCCTTCCGTTCCAAGCTAAA 58.470 50.000 0.00 0.00 0.00 1.85
180 181 2.092323 GCCTTCCGTTCCAAGCTAAAT 58.908 47.619 0.00 0.00 0.00 1.40
181 182 2.492088 GCCTTCCGTTCCAAGCTAAATT 59.508 45.455 0.00 0.00 0.00 1.82
182 183 3.427638 GCCTTCCGTTCCAAGCTAAATTC 60.428 47.826 0.00 0.00 0.00 2.17
183 184 3.756434 CCTTCCGTTCCAAGCTAAATTCA 59.244 43.478 0.00 0.00 0.00 2.57
184 185 4.217550 CCTTCCGTTCCAAGCTAAATTCAA 59.782 41.667 0.00 0.00 0.00 2.69
185 186 5.278758 CCTTCCGTTCCAAGCTAAATTCAAA 60.279 40.000 0.00 0.00 0.00 2.69
186 187 5.975693 TCCGTTCCAAGCTAAATTCAAAT 57.024 34.783 0.00 0.00 0.00 2.32
187 188 5.708948 TCCGTTCCAAGCTAAATTCAAATG 58.291 37.500 0.00 0.00 0.00 2.32
188 189 5.475220 TCCGTTCCAAGCTAAATTCAAATGA 59.525 36.000 0.00 0.00 0.00 2.57
189 190 6.015856 TCCGTTCCAAGCTAAATTCAAATGAA 60.016 34.615 0.00 0.00 38.56 2.57
190 191 6.308766 CCGTTCCAAGCTAAATTCAAATGAAG 59.691 38.462 1.98 0.00 37.48 3.02
191 192 6.183360 CGTTCCAAGCTAAATTCAAATGAAGC 60.183 38.462 1.98 0.00 37.48 3.86
192 193 5.723295 TCCAAGCTAAATTCAAATGAAGCC 58.277 37.500 1.98 0.00 37.48 4.35
193 194 5.245751 TCCAAGCTAAATTCAAATGAAGCCA 59.754 36.000 1.98 0.00 37.48 4.75
194 195 5.579511 CCAAGCTAAATTCAAATGAAGCCAG 59.420 40.000 1.98 0.41 37.48 4.85
195 196 5.990120 AGCTAAATTCAAATGAAGCCAGT 57.010 34.783 1.98 0.00 37.48 4.00
196 197 5.958955 AGCTAAATTCAAATGAAGCCAGTC 58.041 37.500 1.98 0.00 37.48 3.51
197 198 4.795278 GCTAAATTCAAATGAAGCCAGTCG 59.205 41.667 1.98 0.00 37.48 4.18
198 199 4.853924 AAATTCAAATGAAGCCAGTCGT 57.146 36.364 1.98 0.00 37.48 4.34
199 200 4.425577 AATTCAAATGAAGCCAGTCGTC 57.574 40.909 1.98 0.00 37.48 4.20
200 201 2.542020 TCAAATGAAGCCAGTCGTCA 57.458 45.000 0.00 0.00 37.58 4.35
201 202 2.416747 TCAAATGAAGCCAGTCGTCAG 58.583 47.619 0.00 0.00 36.66 3.51
202 203 1.135859 CAAATGAAGCCAGTCGTCAGC 60.136 52.381 0.00 0.00 36.66 4.26
203 204 0.674895 AATGAAGCCAGTCGTCAGCC 60.675 55.000 0.00 0.00 36.66 4.85
204 205 1.830587 ATGAAGCCAGTCGTCAGCCA 61.831 55.000 0.00 0.00 36.66 4.75
205 206 1.078848 GAAGCCAGTCGTCAGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
206 207 0.674895 GAAGCCAGTCGTCAGCCATT 60.675 55.000 0.00 0.00 0.00 3.16
207 208 0.250901 AAGCCAGTCGTCAGCCATTT 60.251 50.000 0.00 0.00 0.00 2.32
208 209 0.613260 AGCCAGTCGTCAGCCATTTA 59.387 50.000 0.00 0.00 0.00 1.40
209 210 1.003118 AGCCAGTCGTCAGCCATTTAA 59.997 47.619 0.00 0.00 0.00 1.52
210 211 1.130561 GCCAGTCGTCAGCCATTTAAC 59.869 52.381 0.00 0.00 0.00 2.01
211 212 1.393539 CCAGTCGTCAGCCATTTAACG 59.606 52.381 0.00 0.00 36.50 3.18
212 213 2.066262 CAGTCGTCAGCCATTTAACGT 58.934 47.619 0.00 0.00 36.55 3.99
213 214 3.247442 CAGTCGTCAGCCATTTAACGTA 58.753 45.455 0.00 0.00 36.55 3.57
214 215 3.060363 CAGTCGTCAGCCATTTAACGTAC 59.940 47.826 0.00 0.00 36.55 3.67
215 216 2.988493 GTCGTCAGCCATTTAACGTACA 59.012 45.455 0.00 0.00 36.55 2.90
216 217 2.988493 TCGTCAGCCATTTAACGTACAC 59.012 45.455 0.00 0.00 36.55 2.90
217 218 2.093152 CGTCAGCCATTTAACGTACACC 59.907 50.000 0.00 0.00 0.00 4.16
218 219 2.417586 GTCAGCCATTTAACGTACACCC 59.582 50.000 0.00 0.00 0.00 4.61
219 220 1.395608 CAGCCATTTAACGTACACCCG 59.604 52.381 0.00 0.00 0.00 5.28
220 221 1.275856 AGCCATTTAACGTACACCCGA 59.724 47.619 0.00 0.00 0.00 5.14
221 222 1.662122 GCCATTTAACGTACACCCGAG 59.338 52.381 0.00 0.00 0.00 4.63
222 223 1.662122 CCATTTAACGTACACCCGAGC 59.338 52.381 0.00 0.00 0.00 5.03
223 224 2.339418 CATTTAACGTACACCCGAGCA 58.661 47.619 0.00 0.00 0.00 4.26
224 225 2.068837 TTTAACGTACACCCGAGCAG 57.931 50.000 0.00 0.00 0.00 4.24
225 226 0.388907 TTAACGTACACCCGAGCAGC 60.389 55.000 0.00 0.00 0.00 5.25
226 227 2.531927 TAACGTACACCCGAGCAGCG 62.532 60.000 0.00 0.00 40.47 5.18
235 236 4.379243 CGAGCAGCGGGTCCAGTT 62.379 66.667 10.48 0.00 38.30 3.16
236 237 2.032681 GAGCAGCGGGTCCAGTTT 59.967 61.111 4.57 0.00 35.49 2.66
237 238 1.295423 GAGCAGCGGGTCCAGTTTA 59.705 57.895 4.57 0.00 35.49 2.01
238 239 0.741221 GAGCAGCGGGTCCAGTTTAG 60.741 60.000 4.57 0.00 35.49 1.85
239 240 1.745489 GCAGCGGGTCCAGTTTAGG 60.745 63.158 0.00 0.00 0.00 2.69
240 241 1.745489 CAGCGGGTCCAGTTTAGGC 60.745 63.158 0.00 0.00 0.00 3.93
241 242 1.918800 AGCGGGTCCAGTTTAGGCT 60.919 57.895 0.00 0.00 0.00 4.58
242 243 1.002502 GCGGGTCCAGTTTAGGCTT 60.003 57.895 0.00 0.00 0.00 4.35
243 244 1.305930 GCGGGTCCAGTTTAGGCTTG 61.306 60.000 0.00 0.00 0.00 4.01
244 245 1.305930 CGGGTCCAGTTTAGGCTTGC 61.306 60.000 0.00 0.00 0.00 4.01
245 246 0.251165 GGGTCCAGTTTAGGCTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
246 247 1.616159 GGTCCAGTTTAGGCTTGCAA 58.384 50.000 0.00 0.00 0.00 4.08
247 248 1.541588 GGTCCAGTTTAGGCTTGCAAG 59.458 52.381 22.44 22.44 0.00 4.01
256 257 3.688159 GCTTGCAAGCCACTGGGG 61.688 66.667 36.21 6.17 46.20 4.96
257 258 2.993264 CTTGCAAGCCACTGGGGG 60.993 66.667 14.65 0.00 37.04 5.40
258 259 3.506743 TTGCAAGCCACTGGGGGA 61.507 61.111 0.00 0.00 37.04 4.81
259 260 3.512154 TTGCAAGCCACTGGGGGAG 62.512 63.158 0.00 0.00 37.04 4.30
260 261 3.971702 GCAAGCCACTGGGGGAGT 61.972 66.667 0.00 0.00 37.04 3.85
261 262 2.846532 CAAGCCACTGGGGGAGTT 59.153 61.111 0.00 0.00 37.04 3.01
262 263 1.153756 CAAGCCACTGGGGGAGTTT 59.846 57.895 0.00 0.00 37.04 2.66
263 264 0.895559 CAAGCCACTGGGGGAGTTTC 60.896 60.000 0.00 0.00 37.04 2.78
264 265 2.359975 GCCACTGGGGGAGTTTCG 60.360 66.667 0.00 0.00 37.04 3.46
265 266 3.157680 CCACTGGGGGAGTTTCGT 58.842 61.111 0.00 0.00 29.75 3.85
266 267 1.302511 CCACTGGGGGAGTTTCGTG 60.303 63.158 0.00 0.00 29.75 4.35
267 268 1.302511 CACTGGGGGAGTTTCGTGG 60.303 63.158 0.00 0.00 29.75 4.94
268 269 2.351276 CTGGGGGAGTTTCGTGGG 59.649 66.667 0.00 0.00 0.00 4.61
269 270 3.920093 CTGGGGGAGTTTCGTGGGC 62.920 68.421 0.00 0.00 0.00 5.36
270 271 4.735358 GGGGGAGTTTCGTGGGCC 62.735 72.222 0.00 0.00 0.00 5.80
274 275 2.975799 GAGTTTCGTGGGCCGCAA 60.976 61.111 18.64 7.83 36.19 4.85
275 276 2.517402 AGTTTCGTGGGCCGCAAA 60.517 55.556 18.64 13.33 36.19 3.68
276 277 2.354188 GTTTCGTGGGCCGCAAAC 60.354 61.111 18.64 20.10 36.19 2.93
277 278 2.517402 TTTCGTGGGCCGCAAACT 60.517 55.556 18.64 0.00 36.19 2.66
278 279 2.548295 TTTCGTGGGCCGCAAACTC 61.548 57.895 18.64 0.00 36.19 3.01
279 280 2.951475 TTTCGTGGGCCGCAAACTCT 62.951 55.000 18.64 0.00 36.19 3.24
280 281 2.951475 TTCGTGGGCCGCAAACTCTT 62.951 55.000 18.64 0.00 36.19 2.85
281 282 2.644992 GTGGGCCGCAAACTCTTG 59.355 61.111 13.30 0.00 35.49 3.02
282 283 2.597217 TGGGCCGCAAACTCTTGG 60.597 61.111 0.00 0.00 32.76 3.61
283 284 3.373565 GGGCCGCAAACTCTTGGG 61.374 66.667 0.00 0.00 43.36 4.12
284 285 4.056125 GGCCGCAAACTCTTGGGC 62.056 66.667 0.00 8.15 42.61 5.36
285 286 4.056125 GCCGCAAACTCTTGGGCC 62.056 66.667 0.00 0.00 42.61 5.80
286 287 3.737172 CCGCAAACTCTTGGGCCG 61.737 66.667 0.00 0.00 42.61 6.13
287 288 2.978010 CGCAAACTCTTGGGCCGT 60.978 61.111 0.00 0.00 38.49 5.68
288 289 2.644992 GCAAACTCTTGGGCCGTG 59.355 61.111 0.00 0.00 32.76 4.94
289 290 2.644992 CAAACTCTTGGGCCGTGC 59.355 61.111 0.00 0.00 0.00 5.34
301 302 3.998672 CCGTGCCACCGGTACTGT 61.999 66.667 6.87 0.00 43.07 3.55
302 303 2.638354 CCGTGCCACCGGTACTGTA 61.638 63.158 6.87 0.00 43.07 2.74
303 304 1.444895 CGTGCCACCGGTACTGTAC 60.445 63.158 6.87 9.46 36.17 2.90
304 305 1.079612 GTGCCACCGGTACTGTACC 60.080 63.158 24.03 24.03 45.52 3.34
314 315 3.870633 GGTACTGTACCAGTTCCTCTG 57.129 52.381 27.78 0.00 44.76 3.35
315 316 3.163467 GGTACTGTACCAGTTCCTCTGT 58.837 50.000 27.78 0.00 44.76 3.41
316 317 3.577415 GGTACTGTACCAGTTCCTCTGTT 59.423 47.826 27.78 0.00 44.76 3.16
317 318 3.753294 ACTGTACCAGTTCCTCTGTTG 57.247 47.619 0.00 0.00 42.59 3.33
318 319 3.039011 ACTGTACCAGTTCCTCTGTTGT 58.961 45.455 0.00 0.00 42.59 3.32
319 320 3.069729 ACTGTACCAGTTCCTCTGTTGTC 59.930 47.826 0.00 0.00 42.59 3.18
320 321 2.035449 TGTACCAGTTCCTCTGTTGTCG 59.965 50.000 0.00 0.00 42.19 4.35
321 322 1.410004 ACCAGTTCCTCTGTTGTCGA 58.590 50.000 0.00 0.00 42.19 4.20
322 323 1.068741 ACCAGTTCCTCTGTTGTCGAC 59.931 52.381 9.11 9.11 42.19 4.20
323 324 1.068588 CCAGTTCCTCTGTTGTCGACA 59.931 52.381 15.76 15.76 42.19 4.35
324 325 2.483013 CCAGTTCCTCTGTTGTCGACAA 60.483 50.000 26.53 26.53 42.19 3.18
332 333 2.589442 TTGTCGACAACACGCCCC 60.589 61.111 26.53 0.00 37.70 5.80
333 334 3.096633 TTGTCGACAACACGCCCCT 62.097 57.895 26.53 0.00 37.70 4.79
334 335 2.737376 GTCGACAACACGCCCCTC 60.737 66.667 11.55 0.00 0.00 4.30
335 336 3.228017 TCGACAACACGCCCCTCA 61.228 61.111 0.00 0.00 0.00 3.86
336 337 2.280524 CGACAACACGCCCCTCAA 60.281 61.111 0.00 0.00 0.00 3.02
337 338 2.604174 CGACAACACGCCCCTCAAC 61.604 63.158 0.00 0.00 0.00 3.18
338 339 1.227853 GACAACACGCCCCTCAACT 60.228 57.895 0.00 0.00 0.00 3.16
339 340 0.034337 GACAACACGCCCCTCAACTA 59.966 55.000 0.00 0.00 0.00 2.24
340 341 0.250166 ACAACACGCCCCTCAACTAC 60.250 55.000 0.00 0.00 0.00 2.73
341 342 0.034896 CAACACGCCCCTCAACTACT 59.965 55.000 0.00 0.00 0.00 2.57
342 343 0.320697 AACACGCCCCTCAACTACTC 59.679 55.000 0.00 0.00 0.00 2.59
343 344 0.542232 ACACGCCCCTCAACTACTCT 60.542 55.000 0.00 0.00 0.00 3.24
344 345 0.608640 CACGCCCCTCAACTACTCTT 59.391 55.000 0.00 0.00 0.00 2.85
345 346 0.608640 ACGCCCCTCAACTACTCTTG 59.391 55.000 0.00 0.00 0.00 3.02
346 347 0.108138 CGCCCCTCAACTACTCTTGG 60.108 60.000 0.00 0.00 0.00 3.61
347 348 0.393132 GCCCCTCAACTACTCTTGGC 60.393 60.000 0.00 0.00 0.00 4.52
348 349 0.108138 CCCCTCAACTACTCTTGGCG 60.108 60.000 0.00 0.00 0.00 5.69
349 350 0.895530 CCCTCAACTACTCTTGGCGA 59.104 55.000 0.00 0.00 0.00 5.54
350 351 1.482593 CCCTCAACTACTCTTGGCGAT 59.517 52.381 0.00 0.00 0.00 4.58
351 352 2.482142 CCCTCAACTACTCTTGGCGATC 60.482 54.545 0.00 0.00 0.00 3.69
352 353 2.455032 CTCAACTACTCTTGGCGATCG 58.545 52.381 11.69 11.69 0.00 3.69
353 354 1.816835 TCAACTACTCTTGGCGATCGT 59.183 47.619 17.81 0.00 0.00 3.73
354 355 2.159421 TCAACTACTCTTGGCGATCGTC 60.159 50.000 13.98 13.98 0.00 4.20
355 356 1.752683 ACTACTCTTGGCGATCGTCT 58.247 50.000 21.85 2.07 0.00 4.18
356 357 2.093106 ACTACTCTTGGCGATCGTCTT 58.907 47.619 21.85 2.64 0.00 3.01
357 358 3.276857 ACTACTCTTGGCGATCGTCTTA 58.723 45.455 21.85 8.06 0.00 2.10
358 359 2.853731 ACTCTTGGCGATCGTCTTAG 57.146 50.000 21.85 17.21 0.00 2.18
359 360 2.093106 ACTCTTGGCGATCGTCTTAGT 58.907 47.619 21.85 17.13 0.00 2.24
360 361 3.276857 ACTCTTGGCGATCGTCTTAGTA 58.723 45.455 21.85 0.00 0.00 1.82
361 362 3.884091 ACTCTTGGCGATCGTCTTAGTAT 59.116 43.478 21.85 8.01 0.00 2.12
362 363 4.023878 ACTCTTGGCGATCGTCTTAGTATC 60.024 45.833 21.85 0.00 0.00 2.24
363 364 4.135306 TCTTGGCGATCGTCTTAGTATCT 58.865 43.478 21.85 0.00 0.00 1.98
364 365 4.579340 TCTTGGCGATCGTCTTAGTATCTT 59.421 41.667 21.85 0.00 0.00 2.40
365 366 4.485024 TGGCGATCGTCTTAGTATCTTC 57.515 45.455 21.85 0.00 0.00 2.87
366 367 3.881089 TGGCGATCGTCTTAGTATCTTCA 59.119 43.478 21.85 0.00 0.00 3.02
367 368 4.023963 TGGCGATCGTCTTAGTATCTTCAG 60.024 45.833 21.85 0.00 0.00 3.02
368 369 4.468643 GCGATCGTCTTAGTATCTTCAGG 58.531 47.826 17.81 0.00 0.00 3.86
369 370 4.614078 GCGATCGTCTTAGTATCTTCAGGG 60.614 50.000 17.81 0.00 0.00 4.45
370 371 4.083217 CGATCGTCTTAGTATCTTCAGGGG 60.083 50.000 7.03 0.00 0.00 4.79
371 372 2.957006 TCGTCTTAGTATCTTCAGGGGC 59.043 50.000 0.00 0.00 0.00 5.80
372 373 2.287668 CGTCTTAGTATCTTCAGGGGCG 60.288 54.545 0.00 0.00 0.00 6.13
373 374 1.687123 TCTTAGTATCTTCAGGGGCGC 59.313 52.381 0.00 0.00 0.00 6.53
374 375 0.756903 TTAGTATCTTCAGGGGCGCC 59.243 55.000 21.18 21.18 0.00 6.53
375 376 1.461091 TAGTATCTTCAGGGGCGCCG 61.461 60.000 22.54 6.96 0.00 6.46
376 377 4.235762 TATCTTCAGGGGCGCCGC 62.236 66.667 34.39 34.39 0.00 6.53
396 397 2.345991 GGTAGGCCGCTGACACAA 59.654 61.111 0.00 0.00 0.00 3.33
397 398 1.302192 GGTAGGCCGCTGACACAAA 60.302 57.895 0.00 0.00 0.00 2.83
398 399 1.574702 GGTAGGCCGCTGACACAAAC 61.575 60.000 0.00 0.00 0.00 2.93
399 400 0.882927 GTAGGCCGCTGACACAAACA 60.883 55.000 0.00 0.00 0.00 2.83
400 401 0.882927 TAGGCCGCTGACACAAACAC 60.883 55.000 0.00 0.00 0.00 3.32
401 402 2.477176 GGCCGCTGACACAAACACA 61.477 57.895 0.00 0.00 0.00 3.72
402 403 1.654220 GCCGCTGACACAAACACAT 59.346 52.632 0.00 0.00 0.00 3.21
403 404 0.030638 GCCGCTGACACAAACACATT 59.969 50.000 0.00 0.00 0.00 2.71
404 405 1.757574 CCGCTGACACAAACACATTG 58.242 50.000 0.00 0.00 44.95 2.82
405 406 1.600164 CCGCTGACACAAACACATTGG 60.600 52.381 0.00 0.00 43.66 3.16
406 407 1.065401 CGCTGACACAAACACATTGGT 59.935 47.619 0.00 0.00 43.66 3.67
407 408 2.731217 GCTGACACAAACACATTGGTC 58.269 47.619 0.00 0.00 43.66 4.02
408 409 2.854424 GCTGACACAAACACATTGGTCG 60.854 50.000 0.00 0.00 43.66 4.79
409 410 1.064803 TGACACAAACACATTGGTCGC 59.935 47.619 0.00 0.00 43.66 5.19
410 411 1.064803 GACACAAACACATTGGTCGCA 59.935 47.619 0.00 0.00 43.66 5.10
411 412 1.680735 ACACAAACACATTGGTCGCAT 59.319 42.857 0.00 0.00 43.66 4.73
412 413 2.052891 CACAAACACATTGGTCGCATG 58.947 47.619 0.00 0.00 43.66 4.06
413 414 1.680735 ACAAACACATTGGTCGCATGT 59.319 42.857 0.00 0.00 43.66 3.21
414 415 2.100584 ACAAACACATTGGTCGCATGTT 59.899 40.909 0.00 0.00 43.66 2.71
415 416 3.122297 CAAACACATTGGTCGCATGTTT 58.878 40.909 0.00 0.00 42.63 2.83
696 4429 2.039624 ACACCGCATCCCTCTCCT 59.960 61.111 0.00 0.00 0.00 3.69
773 5819 1.305201 GCGCCGAATAATCCTTTCCA 58.695 50.000 0.00 0.00 0.00 3.53
903 5954 2.864114 GGTTCCCTAAAACCGCTCC 58.136 57.895 0.00 0.00 39.40 4.70
904 5955 0.679002 GGTTCCCTAAAACCGCTCCC 60.679 60.000 0.00 0.00 39.40 4.30
1309 6382 1.466697 GGTTCGACGAGCTCTTCTCAG 60.467 57.143 17.19 3.33 41.98 3.35
1617 6690 1.661341 GCAGATCGCTCTTCACCATT 58.339 50.000 2.84 0.00 37.77 3.16
1633 6706 2.061773 CCATTGTCGCGAGGATCATAC 58.938 52.381 10.24 0.00 33.17 2.39
1635 6708 2.492019 TTGTCGCGAGGATCATACAG 57.508 50.000 10.24 0.00 33.17 2.74
1644 6717 3.004839 CGAGGATCATACAGGTGTTCGAT 59.995 47.826 0.00 0.00 33.17 3.59
1743 6816 2.864114 CTCCTTCGTCGGGAGTACA 58.136 57.895 8.85 0.00 43.77 2.90
1764 6837 1.794714 ATTCGCTGGTGTATCCCTCT 58.205 50.000 0.00 0.00 34.77 3.69
1799 6872 1.215647 CTCCAAAGAGGTCGACGGG 59.784 63.158 9.92 4.25 39.02 5.28
2030 7103 2.224426 ACGATTTCAGTGGCAGTTACCA 60.224 45.455 0.00 0.00 37.38 3.25
2031 7104 2.416547 CGATTTCAGTGGCAGTTACCAG 59.583 50.000 0.00 0.00 41.46 4.00
2032 7105 3.674997 GATTTCAGTGGCAGTTACCAGA 58.325 45.455 0.00 0.00 41.46 3.86
2033 7106 2.543777 TTCAGTGGCAGTTACCAGAC 57.456 50.000 0.00 0.00 41.46 3.51
2034 7107 0.685097 TCAGTGGCAGTTACCAGACC 59.315 55.000 0.00 0.00 41.46 3.85
2035 7108 0.396435 CAGTGGCAGTTACCAGACCA 59.604 55.000 0.00 0.00 41.46 4.02
2036 7109 1.136828 AGTGGCAGTTACCAGACCAA 58.863 50.000 0.00 0.00 41.46 3.67
2037 7110 1.202770 AGTGGCAGTTACCAGACCAAC 60.203 52.381 0.00 0.00 41.46 3.77
2038 7111 0.250124 TGGCAGTTACCAGACCAACG 60.250 55.000 0.00 0.00 33.75 4.10
2576 7658 1.153667 GGACTCAGCTCTCCGCAAG 60.154 63.158 0.00 0.00 42.61 4.01
2773 7859 1.351076 CCTTGGTGATTTTGCCCCTT 58.649 50.000 0.00 0.00 0.00 3.95
2826 7936 8.278729 TGCATCTTGTAATTGATGTGATGTTA 57.721 30.769 0.00 0.00 41.33 2.41
2881 8019 6.253946 AGATTACTCCCTATGTCCCAAAAG 57.746 41.667 0.00 0.00 0.00 2.27
2919 8069 1.451927 CAATGCCAGGCGCTTAGGA 60.452 57.895 7.64 0.00 38.78 2.94
3007 8157 4.899352 ATTCATAGGCGCTAGGAAGAAT 57.101 40.909 7.64 7.38 39.50 2.40
3070 8220 2.185310 AATCGCCCGCTTCCACTTCT 62.185 55.000 0.00 0.00 0.00 2.85
3071 8221 2.185310 ATCGCCCGCTTCCACTTCTT 62.185 55.000 0.00 0.00 0.00 2.52
3074 8224 2.680913 CCCGCTTCCACTTCTTGCG 61.681 63.158 0.00 0.00 45.22 4.85
3076 8226 2.563427 GCTTCCACTTCTTGCGCC 59.437 61.111 4.18 0.00 0.00 6.53
3104 8490 1.399440 CATGTGACGCCAGGAATTGAG 59.601 52.381 0.00 0.00 0.00 3.02
3117 8503 0.482446 AATTGAGGGTCCAACTGCCA 59.518 50.000 0.00 0.00 0.00 4.92
3127 8513 0.748005 CCAACTGCCATTCTACCGGG 60.748 60.000 6.32 0.00 0.00 5.73
3131 8517 1.141053 ACTGCCATTCTACCGGGAATC 59.859 52.381 6.32 0.00 34.15 2.52
3132 8518 1.417890 CTGCCATTCTACCGGGAATCT 59.582 52.381 6.32 0.00 34.15 2.40
3133 8519 1.843851 TGCCATTCTACCGGGAATCTT 59.156 47.619 6.32 0.00 34.15 2.40
3134 8520 2.222027 GCCATTCTACCGGGAATCTTG 58.778 52.381 6.32 0.00 34.15 3.02
3147 8605 5.449177 CCGGGAATCTTGCTTATTTTGAGAC 60.449 44.000 0.00 0.00 0.00 3.36
3152 8610 3.684788 TCTTGCTTATTTTGAGACGGAGC 59.315 43.478 0.00 0.00 0.00 4.70
3300 8762 1.491332 TGACCCCAGAAAAACCGAAGA 59.509 47.619 0.00 0.00 0.00 2.87
3488 8955 1.271934 GCAACACCAACATGCATACCA 59.728 47.619 0.00 0.00 39.81 3.25
3613 9080 2.719739 CATGTTGAGGAGGCATCTTGT 58.280 47.619 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.202348 CCAATTTGGAGCTTCCGTTCC 59.798 52.381 10.03 0.00 40.96 3.62
1 2 2.159382 TCCAATTTGGAGCTTCCGTTC 58.841 47.619 14.24 0.00 42.67 3.95
2 3 2.286365 TCCAATTTGGAGCTTCCGTT 57.714 45.000 14.24 0.00 42.67 4.44
11 12 3.117888 GGTATCAGAGCCTCCAATTTGGA 60.118 47.826 17.09 17.09 45.98 3.53
12 13 3.217626 GGTATCAGAGCCTCCAATTTGG 58.782 50.000 9.28 9.28 39.43 3.28
13 14 3.889815 TGGTATCAGAGCCTCCAATTTG 58.110 45.455 0.00 0.00 0.00 2.32
14 15 4.591321 TTGGTATCAGAGCCTCCAATTT 57.409 40.909 0.00 0.00 33.95 1.82
15 16 4.803329 ATTGGTATCAGAGCCTCCAATT 57.197 40.909 0.00 0.00 43.52 2.32
16 17 4.079558 ACAATTGGTATCAGAGCCTCCAAT 60.080 41.667 10.83 0.00 46.54 3.16
17 18 3.266772 ACAATTGGTATCAGAGCCTCCAA 59.733 43.478 10.83 0.00 41.40 3.53
18 19 2.846206 ACAATTGGTATCAGAGCCTCCA 59.154 45.455 10.83 0.00 0.00 3.86
19 20 3.118261 TCACAATTGGTATCAGAGCCTCC 60.118 47.826 10.83 0.00 0.00 4.30
20 21 4.125703 CTCACAATTGGTATCAGAGCCTC 58.874 47.826 10.83 0.00 0.00 4.70
21 22 3.776969 TCTCACAATTGGTATCAGAGCCT 59.223 43.478 10.83 0.00 0.00 4.58
22 23 4.142609 TCTCACAATTGGTATCAGAGCC 57.857 45.455 10.83 0.00 0.00 4.70
23 24 6.690194 ATTTCTCACAATTGGTATCAGAGC 57.310 37.500 10.83 0.00 0.00 4.09
24 25 7.404985 CGAATTTCTCACAATTGGTATCAGAG 58.595 38.462 10.83 7.08 0.00 3.35
25 26 6.183360 GCGAATTTCTCACAATTGGTATCAGA 60.183 38.462 10.83 0.60 0.00 3.27
26 27 5.967674 GCGAATTTCTCACAATTGGTATCAG 59.032 40.000 10.83 0.00 0.00 2.90
27 28 5.647658 AGCGAATTTCTCACAATTGGTATCA 59.352 36.000 10.83 0.00 0.00 2.15
28 29 6.124088 AGCGAATTTCTCACAATTGGTATC 57.876 37.500 10.83 0.00 0.00 2.24
29 30 5.220662 CGAGCGAATTTCTCACAATTGGTAT 60.221 40.000 10.83 0.00 0.00 2.73
30 31 4.092821 CGAGCGAATTTCTCACAATTGGTA 59.907 41.667 10.83 0.00 0.00 3.25
31 32 3.120199 CGAGCGAATTTCTCACAATTGGT 60.120 43.478 10.83 0.00 0.00 3.67
32 33 3.125146 TCGAGCGAATTTCTCACAATTGG 59.875 43.478 10.83 0.00 0.00 3.16
33 34 4.326413 TCGAGCGAATTTCTCACAATTG 57.674 40.909 3.24 3.24 0.00 2.32
34 35 4.872691 AGATCGAGCGAATTTCTCACAATT 59.127 37.500 0.00 0.00 0.00 2.32
35 36 4.437239 AGATCGAGCGAATTTCTCACAAT 58.563 39.130 0.00 1.10 0.00 2.71
36 37 3.849911 AGATCGAGCGAATTTCTCACAA 58.150 40.909 0.00 0.00 0.00 3.33
37 38 3.510388 AGATCGAGCGAATTTCTCACA 57.490 42.857 0.00 0.00 0.00 3.58
38 39 4.602995 ACTAGATCGAGCGAATTTCTCAC 58.397 43.478 2.33 0.00 0.00 3.51
39 40 4.261238 GGACTAGATCGAGCGAATTTCTCA 60.261 45.833 2.33 0.00 0.00 3.27
40 41 4.023536 AGGACTAGATCGAGCGAATTTCTC 60.024 45.833 2.33 0.13 0.00 2.87
41 42 3.886505 AGGACTAGATCGAGCGAATTTCT 59.113 43.478 2.33 0.00 0.00 2.52
42 43 4.231718 AGGACTAGATCGAGCGAATTTC 57.768 45.455 2.33 0.00 0.00 2.17
43 44 4.320641 GCTAGGACTAGATCGAGCGAATTT 60.321 45.833 10.43 0.00 35.21 1.82
44 45 3.189702 GCTAGGACTAGATCGAGCGAATT 59.810 47.826 10.43 0.00 35.21 2.17
45 46 2.745281 GCTAGGACTAGATCGAGCGAAT 59.255 50.000 10.43 0.00 35.21 3.34
46 47 2.144730 GCTAGGACTAGATCGAGCGAA 58.855 52.381 10.43 0.00 35.21 4.70
47 48 1.345089 AGCTAGGACTAGATCGAGCGA 59.655 52.381 10.43 0.00 40.34 4.93
48 49 1.803334 AGCTAGGACTAGATCGAGCG 58.197 55.000 10.43 0.00 40.34 5.03
49 50 3.267483 CCTAGCTAGGACTAGATCGAGC 58.733 54.545 32.79 5.47 46.63 5.03
50 51 3.262405 ACCCTAGCTAGGACTAGATCGAG 59.738 52.174 36.80 19.76 46.63 4.04
51 52 3.249752 ACCCTAGCTAGGACTAGATCGA 58.750 50.000 36.80 0.00 46.63 3.59
52 53 3.706600 ACCCTAGCTAGGACTAGATCG 57.293 52.381 36.80 21.08 46.63 3.69
53 54 5.251182 AGAACCCTAGCTAGGACTAGATC 57.749 47.826 36.80 23.51 46.63 2.75
54 55 5.390387 CAAGAACCCTAGCTAGGACTAGAT 58.610 45.833 36.80 17.29 46.63 1.98
55 56 4.386536 CCAAGAACCCTAGCTAGGACTAGA 60.387 50.000 36.80 0.00 46.63 2.43
56 57 3.892588 CCAAGAACCCTAGCTAGGACTAG 59.107 52.174 36.80 23.43 46.63 2.57
57 58 3.530564 TCCAAGAACCCTAGCTAGGACTA 59.469 47.826 36.80 16.50 46.63 2.59
58 59 2.315155 TCCAAGAACCCTAGCTAGGACT 59.685 50.000 36.80 27.39 46.63 3.85
59 60 2.696187 CTCCAAGAACCCTAGCTAGGAC 59.304 54.545 36.80 25.91 46.63 3.85
60 61 2.359355 CCTCCAAGAACCCTAGCTAGGA 60.359 54.545 36.80 16.30 46.63 2.94
61 62 2.043227 CCTCCAAGAACCCTAGCTAGG 58.957 57.143 30.05 30.05 43.25 3.02
62 63 3.033659 TCCTCCAAGAACCCTAGCTAG 57.966 52.381 14.20 14.20 0.00 3.42
63 64 3.375699 CTTCCTCCAAGAACCCTAGCTA 58.624 50.000 0.00 0.00 33.29 3.32
64 65 2.192263 CTTCCTCCAAGAACCCTAGCT 58.808 52.381 0.00 0.00 33.29 3.32
65 66 1.210722 CCTTCCTCCAAGAACCCTAGC 59.789 57.143 0.00 0.00 33.29 3.42
66 67 1.840635 CCCTTCCTCCAAGAACCCTAG 59.159 57.143 0.00 0.00 33.29 3.02
67 68 1.557188 CCCCTTCCTCCAAGAACCCTA 60.557 57.143 0.00 0.00 33.29 3.53
68 69 0.846870 CCCCTTCCTCCAAGAACCCT 60.847 60.000 0.00 0.00 33.29 4.34
69 70 0.845102 TCCCCTTCCTCCAAGAACCC 60.845 60.000 0.00 0.00 33.29 4.11
70 71 1.073098 TTCCCCTTCCTCCAAGAACC 58.927 55.000 0.00 0.00 33.29 3.62
71 72 3.458044 AATTCCCCTTCCTCCAAGAAC 57.542 47.619 0.00 0.00 33.29 3.01
72 73 3.401002 TCAAATTCCCCTTCCTCCAAGAA 59.599 43.478 0.00 0.00 33.29 2.52
73 74 2.993146 TCAAATTCCCCTTCCTCCAAGA 59.007 45.455 0.00 0.00 33.29 3.02
74 75 3.456380 TCAAATTCCCCTTCCTCCAAG 57.544 47.619 0.00 0.00 0.00 3.61
75 76 4.418395 AATCAAATTCCCCTTCCTCCAA 57.582 40.909 0.00 0.00 0.00 3.53
76 77 4.418395 AAATCAAATTCCCCTTCCTCCA 57.582 40.909 0.00 0.00 0.00 3.86
77 78 5.360999 CAGTAAATCAAATTCCCCTTCCTCC 59.639 44.000 0.00 0.00 0.00 4.30
78 79 5.952347 ACAGTAAATCAAATTCCCCTTCCTC 59.048 40.000 0.00 0.00 0.00 3.71
79 80 5.903923 ACAGTAAATCAAATTCCCCTTCCT 58.096 37.500 0.00 0.00 0.00 3.36
80 81 6.183360 GCTACAGTAAATCAAATTCCCCTTCC 60.183 42.308 0.00 0.00 0.00 3.46
81 82 6.603599 AGCTACAGTAAATCAAATTCCCCTTC 59.396 38.462 0.00 0.00 0.00 3.46
82 83 6.494059 AGCTACAGTAAATCAAATTCCCCTT 58.506 36.000 0.00 0.00 0.00 3.95
83 84 6.079712 AGCTACAGTAAATCAAATTCCCCT 57.920 37.500 0.00 0.00 0.00 4.79
84 85 6.152831 ACAAGCTACAGTAAATCAAATTCCCC 59.847 38.462 0.00 0.00 0.00 4.81
85 86 7.158099 ACAAGCTACAGTAAATCAAATTCCC 57.842 36.000 0.00 0.00 0.00 3.97
86 87 7.094377 TGGACAAGCTACAGTAAATCAAATTCC 60.094 37.037 0.00 0.00 0.00 3.01
87 88 7.750903 GTGGACAAGCTACAGTAAATCAAATTC 59.249 37.037 0.00 0.00 0.00 2.17
88 89 7.448469 AGTGGACAAGCTACAGTAAATCAAATT 59.552 33.333 0.00 0.00 0.00 1.82
89 90 6.942576 AGTGGACAAGCTACAGTAAATCAAAT 59.057 34.615 0.00 0.00 0.00 2.32
90 91 6.296026 AGTGGACAAGCTACAGTAAATCAAA 58.704 36.000 0.00 0.00 0.00 2.69
91 92 5.865085 AGTGGACAAGCTACAGTAAATCAA 58.135 37.500 0.00 0.00 0.00 2.57
92 93 5.483685 AGTGGACAAGCTACAGTAAATCA 57.516 39.130 0.00 0.00 0.00 2.57
93 94 7.900782 TTAAGTGGACAAGCTACAGTAAATC 57.099 36.000 0.00 0.00 0.00 2.17
94 95 7.553044 GGATTAAGTGGACAAGCTACAGTAAAT 59.447 37.037 0.00 0.00 0.00 1.40
95 96 6.877322 GGATTAAGTGGACAAGCTACAGTAAA 59.123 38.462 0.00 0.00 0.00 2.01
96 97 6.212791 AGGATTAAGTGGACAAGCTACAGTAA 59.787 38.462 0.00 0.00 0.00 2.24
97 98 5.720041 AGGATTAAGTGGACAAGCTACAGTA 59.280 40.000 0.00 0.00 0.00 2.74
98 99 4.532521 AGGATTAAGTGGACAAGCTACAGT 59.467 41.667 0.00 0.00 0.00 3.55
99 100 5.091261 AGGATTAAGTGGACAAGCTACAG 57.909 43.478 0.00 0.00 0.00 2.74
100 101 4.530553 TGAGGATTAAGTGGACAAGCTACA 59.469 41.667 0.00 0.00 0.00 2.74
101 102 4.870991 GTGAGGATTAAGTGGACAAGCTAC 59.129 45.833 0.00 0.00 0.00 3.58
102 103 4.530553 TGTGAGGATTAAGTGGACAAGCTA 59.469 41.667 0.00 0.00 0.00 3.32
103 104 3.327757 TGTGAGGATTAAGTGGACAAGCT 59.672 43.478 0.00 0.00 0.00 3.74
104 105 3.674997 TGTGAGGATTAAGTGGACAAGC 58.325 45.455 0.00 0.00 0.00 4.01
105 106 5.308825 AGTTGTGAGGATTAAGTGGACAAG 58.691 41.667 0.00 0.00 0.00 3.16
106 107 5.304686 AGTTGTGAGGATTAAGTGGACAA 57.695 39.130 0.00 0.00 0.00 3.18
107 108 4.974645 AGTTGTGAGGATTAAGTGGACA 57.025 40.909 0.00 0.00 0.00 4.02
108 109 7.147707 ACCTATAGTTGTGAGGATTAAGTGGAC 60.148 40.741 0.00 0.00 34.24 4.02
109 110 6.901300 ACCTATAGTTGTGAGGATTAAGTGGA 59.099 38.462 0.00 0.00 34.24 4.02
110 111 7.125792 ACCTATAGTTGTGAGGATTAAGTGG 57.874 40.000 0.00 0.00 34.24 4.00
111 112 7.861372 CGTACCTATAGTTGTGAGGATTAAGTG 59.139 40.741 0.00 0.00 34.24 3.16
112 113 7.776969 TCGTACCTATAGTTGTGAGGATTAAGT 59.223 37.037 0.00 0.00 34.24 2.24
113 114 8.162878 TCGTACCTATAGTTGTGAGGATTAAG 57.837 38.462 0.00 0.00 34.24 1.85
114 115 7.255381 GCTCGTACCTATAGTTGTGAGGATTAA 60.255 40.741 0.00 0.00 34.24 1.40
115 116 6.206243 GCTCGTACCTATAGTTGTGAGGATTA 59.794 42.308 0.00 0.00 34.24 1.75
116 117 5.009811 GCTCGTACCTATAGTTGTGAGGATT 59.990 44.000 0.00 0.00 34.24 3.01
117 118 4.519730 GCTCGTACCTATAGTTGTGAGGAT 59.480 45.833 0.00 0.00 34.24 3.24
118 119 3.881688 GCTCGTACCTATAGTTGTGAGGA 59.118 47.826 0.00 0.00 34.24 3.71
119 120 3.630769 TGCTCGTACCTATAGTTGTGAGG 59.369 47.826 0.00 0.00 36.36 3.86
120 121 4.095932 TGTGCTCGTACCTATAGTTGTGAG 59.904 45.833 0.00 2.51 0.00 3.51
121 122 4.011698 TGTGCTCGTACCTATAGTTGTGA 58.988 43.478 0.00 0.00 0.00 3.58
122 123 4.365899 TGTGCTCGTACCTATAGTTGTG 57.634 45.455 0.00 0.00 0.00 3.33
123 124 4.461781 AGTTGTGCTCGTACCTATAGTTGT 59.538 41.667 0.00 0.00 0.00 3.32
124 125 4.995124 AGTTGTGCTCGTACCTATAGTTG 58.005 43.478 0.00 0.00 0.00 3.16
125 126 5.246145 GAGTTGTGCTCGTACCTATAGTT 57.754 43.478 0.00 0.00 34.13 2.24
126 127 4.897025 GAGTTGTGCTCGTACCTATAGT 57.103 45.455 0.00 0.00 34.13 2.12
137 138 0.033504 TTCACCCGAGAGTTGTGCTC 59.966 55.000 0.00 0.00 44.45 4.26
138 139 0.034059 CTTCACCCGAGAGTTGTGCT 59.966 55.000 0.00 0.00 33.52 4.40
139 140 1.569479 GCTTCACCCGAGAGTTGTGC 61.569 60.000 0.00 0.00 33.52 4.57
140 141 0.951040 GGCTTCACCCGAGAGTTGTG 60.951 60.000 0.00 0.00 34.44 3.33
141 142 1.371558 GGCTTCACCCGAGAGTTGT 59.628 57.895 0.00 0.00 0.00 3.32
142 143 4.285851 GGCTTCACCCGAGAGTTG 57.714 61.111 0.00 0.00 0.00 3.16
151 152 4.699522 ACGGAAGGCGGCTTCACC 62.700 66.667 41.19 29.60 35.19 4.02
152 153 2.668550 AACGGAAGGCGGCTTCAC 60.669 61.111 41.19 31.11 35.19 3.18
153 154 2.358247 GAACGGAAGGCGGCTTCA 60.358 61.111 41.19 0.00 35.19 3.02
154 155 3.125573 GGAACGGAAGGCGGCTTC 61.126 66.667 36.28 36.28 0.00 3.86
155 156 3.485346 TTGGAACGGAAGGCGGCTT 62.485 57.895 25.83 25.83 0.00 4.35
156 157 3.901797 CTTGGAACGGAAGGCGGCT 62.902 63.158 5.25 5.25 0.00 5.52
157 158 3.431725 CTTGGAACGGAAGGCGGC 61.432 66.667 0.00 0.00 0.00 6.53
158 159 2.515996 TAGCTTGGAACGGAAGGCGG 62.516 60.000 0.00 0.00 0.00 6.13
159 160 0.672401 TTAGCTTGGAACGGAAGGCG 60.672 55.000 0.00 0.00 0.00 5.52
160 161 1.530323 TTTAGCTTGGAACGGAAGGC 58.470 50.000 0.00 0.00 0.00 4.35
161 162 3.756434 TGAATTTAGCTTGGAACGGAAGG 59.244 43.478 0.00 0.00 0.00 3.46
162 163 5.371115 TTGAATTTAGCTTGGAACGGAAG 57.629 39.130 0.00 0.00 0.00 3.46
163 164 5.776173 TTTGAATTTAGCTTGGAACGGAA 57.224 34.783 0.00 0.00 0.00 4.30
164 165 5.475220 TCATTTGAATTTAGCTTGGAACGGA 59.525 36.000 0.00 0.00 0.00 4.69
165 166 5.708948 TCATTTGAATTTAGCTTGGAACGG 58.291 37.500 0.00 0.00 0.00 4.44
166 167 6.183360 GCTTCATTTGAATTTAGCTTGGAACG 60.183 38.462 0.00 0.00 33.01 3.95
167 168 6.091305 GGCTTCATTTGAATTTAGCTTGGAAC 59.909 38.462 0.00 0.00 33.01 3.62
168 169 6.165577 GGCTTCATTTGAATTTAGCTTGGAA 58.834 36.000 0.00 0.00 33.01 3.53
169 170 5.245751 TGGCTTCATTTGAATTTAGCTTGGA 59.754 36.000 0.00 0.00 33.01 3.53
170 171 5.481105 TGGCTTCATTTGAATTTAGCTTGG 58.519 37.500 0.00 0.00 33.01 3.61
171 172 6.161381 ACTGGCTTCATTTGAATTTAGCTTG 58.839 36.000 0.00 0.00 33.01 4.01
172 173 6.350629 ACTGGCTTCATTTGAATTTAGCTT 57.649 33.333 0.00 0.00 33.01 3.74
173 174 5.392380 CGACTGGCTTCATTTGAATTTAGCT 60.392 40.000 0.00 0.00 33.01 3.32
174 175 4.795278 CGACTGGCTTCATTTGAATTTAGC 59.205 41.667 0.00 0.00 33.01 3.09
175 176 5.942872 ACGACTGGCTTCATTTGAATTTAG 58.057 37.500 0.00 0.00 33.01 1.85
176 177 5.471797 TGACGACTGGCTTCATTTGAATTTA 59.528 36.000 0.00 0.00 33.01 1.40
177 178 4.278170 TGACGACTGGCTTCATTTGAATTT 59.722 37.500 0.00 0.00 33.01 1.82
178 179 3.820467 TGACGACTGGCTTCATTTGAATT 59.180 39.130 0.00 0.00 33.01 2.17
179 180 3.411446 TGACGACTGGCTTCATTTGAAT 58.589 40.909 0.00 0.00 33.01 2.57
180 181 2.807967 CTGACGACTGGCTTCATTTGAA 59.192 45.455 0.00 0.00 0.00 2.69
181 182 2.416747 CTGACGACTGGCTTCATTTGA 58.583 47.619 0.00 0.00 0.00 2.69
182 183 1.135859 GCTGACGACTGGCTTCATTTG 60.136 52.381 0.00 0.00 0.00 2.32
183 184 1.160137 GCTGACGACTGGCTTCATTT 58.840 50.000 0.00 0.00 0.00 2.32
184 185 0.674895 GGCTGACGACTGGCTTCATT 60.675 55.000 10.53 0.00 37.50 2.57
185 186 1.078848 GGCTGACGACTGGCTTCAT 60.079 57.895 10.53 0.00 37.50 2.57
186 187 1.830587 ATGGCTGACGACTGGCTTCA 61.831 55.000 17.16 0.00 40.19 3.02
187 188 0.674895 AATGGCTGACGACTGGCTTC 60.675 55.000 17.16 0.00 40.19 3.86
188 189 0.250901 AAATGGCTGACGACTGGCTT 60.251 50.000 17.16 9.70 40.19 4.35
189 190 0.613260 TAAATGGCTGACGACTGGCT 59.387 50.000 17.16 2.66 40.19 4.75
190 191 1.130561 GTTAAATGGCTGACGACTGGC 59.869 52.381 10.83 10.83 40.01 4.85
191 192 1.393539 CGTTAAATGGCTGACGACTGG 59.606 52.381 0.00 0.00 37.69 4.00
192 193 2.066262 ACGTTAAATGGCTGACGACTG 58.934 47.619 1.50 0.00 38.74 3.51
193 194 2.450609 ACGTTAAATGGCTGACGACT 57.549 45.000 1.50 0.00 38.74 4.18
194 195 2.988493 TGTACGTTAAATGGCTGACGAC 59.012 45.455 0.00 0.00 38.74 4.34
195 196 2.988493 GTGTACGTTAAATGGCTGACGA 59.012 45.455 0.00 0.00 38.74 4.20
196 197 2.093152 GGTGTACGTTAAATGGCTGACG 59.907 50.000 0.00 0.00 41.00 4.35
197 198 2.417586 GGGTGTACGTTAAATGGCTGAC 59.582 50.000 0.00 0.00 0.00 3.51
198 199 2.702261 GGGTGTACGTTAAATGGCTGA 58.298 47.619 0.00 0.00 0.00 4.26
199 200 1.395608 CGGGTGTACGTTAAATGGCTG 59.604 52.381 0.00 0.00 0.00 4.85
200 201 1.275856 TCGGGTGTACGTTAAATGGCT 59.724 47.619 0.00 0.00 34.94 4.75
201 202 1.662122 CTCGGGTGTACGTTAAATGGC 59.338 52.381 0.00 0.00 34.94 4.40
202 203 1.662122 GCTCGGGTGTACGTTAAATGG 59.338 52.381 0.00 0.00 34.94 3.16
203 204 2.339418 TGCTCGGGTGTACGTTAAATG 58.661 47.619 0.00 0.00 34.94 2.32
204 205 2.613691 CTGCTCGGGTGTACGTTAAAT 58.386 47.619 0.00 0.00 34.94 1.40
205 206 1.936203 GCTGCTCGGGTGTACGTTAAA 60.936 52.381 0.00 0.00 34.94 1.52
206 207 0.388907 GCTGCTCGGGTGTACGTTAA 60.389 55.000 0.00 0.00 34.94 2.01
207 208 1.213537 GCTGCTCGGGTGTACGTTA 59.786 57.895 0.00 0.00 34.94 3.18
208 209 2.048503 GCTGCTCGGGTGTACGTT 60.049 61.111 0.00 0.00 34.94 3.99
209 210 4.415332 CGCTGCTCGGGTGTACGT 62.415 66.667 0.00 0.00 34.94 3.57
218 219 2.501223 TAAACTGGACCCGCTGCTCG 62.501 60.000 0.00 0.00 38.08 5.03
219 220 0.741221 CTAAACTGGACCCGCTGCTC 60.741 60.000 0.00 0.00 0.00 4.26
220 221 1.296715 CTAAACTGGACCCGCTGCT 59.703 57.895 0.00 0.00 0.00 4.24
221 222 1.745489 CCTAAACTGGACCCGCTGC 60.745 63.158 0.00 0.00 0.00 5.25
222 223 1.745489 GCCTAAACTGGACCCGCTG 60.745 63.158 0.00 0.00 0.00 5.18
223 224 1.489560 AAGCCTAAACTGGACCCGCT 61.490 55.000 0.00 0.00 0.00 5.52
224 225 1.002502 AAGCCTAAACTGGACCCGC 60.003 57.895 0.00 0.00 0.00 6.13
225 226 1.305930 GCAAGCCTAAACTGGACCCG 61.306 60.000 0.00 0.00 0.00 5.28
226 227 0.251165 TGCAAGCCTAAACTGGACCC 60.251 55.000 0.00 0.00 0.00 4.46
227 228 1.541588 CTTGCAAGCCTAAACTGGACC 59.458 52.381 14.65 0.00 0.00 4.46
228 229 1.068264 GCTTGCAAGCCTAAACTGGAC 60.068 52.381 36.21 8.26 46.20 4.02
229 230 1.247567 GCTTGCAAGCCTAAACTGGA 58.752 50.000 36.21 0.00 46.20 3.86
230 231 3.800628 GCTTGCAAGCCTAAACTGG 57.199 52.632 36.21 5.40 46.20 4.00
240 241 2.993264 CCCCCAGTGGCTTGCAAG 60.993 66.667 22.44 22.44 0.00 4.01
241 242 3.506743 TCCCCCAGTGGCTTGCAA 61.507 61.111 2.61 0.00 0.00 4.08
242 243 3.970410 CTCCCCCAGTGGCTTGCA 61.970 66.667 2.61 0.00 0.00 4.08
243 244 3.513750 AACTCCCCCAGTGGCTTGC 62.514 63.158 2.61 0.00 34.56 4.01
244 245 0.895559 GAAACTCCCCCAGTGGCTTG 60.896 60.000 2.61 0.00 34.56 4.01
245 246 1.460699 GAAACTCCCCCAGTGGCTT 59.539 57.895 2.61 0.00 34.56 4.35
246 247 2.895424 CGAAACTCCCCCAGTGGCT 61.895 63.158 2.61 0.00 34.56 4.75
247 248 2.359975 CGAAACTCCCCCAGTGGC 60.360 66.667 2.61 0.00 34.56 5.01
248 249 1.302511 CACGAAACTCCCCCAGTGG 60.303 63.158 0.63 0.63 34.56 4.00
249 250 1.302511 CCACGAAACTCCCCCAGTG 60.303 63.158 0.00 0.00 34.56 3.66
250 251 2.526046 CCCACGAAACTCCCCCAGT 61.526 63.158 0.00 0.00 36.64 4.00
251 252 2.351276 CCCACGAAACTCCCCCAG 59.649 66.667 0.00 0.00 0.00 4.45
252 253 3.961414 GCCCACGAAACTCCCCCA 61.961 66.667 0.00 0.00 0.00 4.96
253 254 4.735358 GGCCCACGAAACTCCCCC 62.735 72.222 0.00 0.00 0.00 5.40
264 265 2.644992 CAAGAGTTTGCGGCCCAC 59.355 61.111 0.00 0.00 0.00 4.61
265 266 2.597217 CCAAGAGTTTGCGGCCCA 60.597 61.111 0.00 0.00 32.79 5.36
266 267 3.373565 CCCAAGAGTTTGCGGCCC 61.374 66.667 0.00 0.00 32.79 5.80
267 268 4.056125 GCCCAAGAGTTTGCGGCC 62.056 66.667 0.00 0.00 41.20 6.13
268 269 4.056125 GGCCCAAGAGTTTGCGGC 62.056 66.667 0.00 0.00 43.83 6.53
269 270 3.737172 CGGCCCAAGAGTTTGCGG 61.737 66.667 0.00 0.00 32.79 5.69
270 271 2.978010 ACGGCCCAAGAGTTTGCG 60.978 61.111 0.00 0.00 32.79 4.85
271 272 2.644992 CACGGCCCAAGAGTTTGC 59.355 61.111 0.00 0.00 32.79 3.68
272 273 2.644992 GCACGGCCCAAGAGTTTG 59.355 61.111 0.00 0.00 0.00 2.93
273 274 2.597510 GGCACGGCCCAAGAGTTT 60.598 61.111 0.00 0.00 44.06 2.66
285 286 1.444895 GTACAGTACCGGTGGCACG 60.445 63.158 19.93 6.81 0.00 5.34
286 287 1.079612 GGTACAGTACCGGTGGCAC 60.080 63.158 19.93 9.70 39.39 5.01
287 288 3.379880 GGTACAGTACCGGTGGCA 58.620 61.111 19.93 0.00 39.39 4.92
299 300 2.035449 CGACAACAGAGGAACTGGTACA 59.965 50.000 0.00 0.00 45.73 2.90
300 301 2.295349 TCGACAACAGAGGAACTGGTAC 59.705 50.000 0.00 0.00 45.73 3.34
301 302 2.295349 GTCGACAACAGAGGAACTGGTA 59.705 50.000 11.55 0.00 45.73 3.25
315 316 2.589442 GGGGCGTGTTGTCGACAA 60.589 61.111 26.53 26.53 40.65 3.18
316 317 3.509137 GAGGGGCGTGTTGTCGACA 62.509 63.158 15.76 15.76 41.04 4.35
317 318 2.737376 GAGGGGCGTGTTGTCGAC 60.737 66.667 9.11 9.11 38.22 4.20
318 319 2.798364 TTGAGGGGCGTGTTGTCGA 61.798 57.895 0.00 0.00 0.00 4.20
319 320 2.280524 TTGAGGGGCGTGTTGTCG 60.281 61.111 0.00 0.00 0.00 4.35
320 321 0.034337 TAGTTGAGGGGCGTGTTGTC 59.966 55.000 0.00 0.00 0.00 3.18
321 322 0.250166 GTAGTTGAGGGGCGTGTTGT 60.250 55.000 0.00 0.00 0.00 3.32
322 323 0.034896 AGTAGTTGAGGGGCGTGTTG 59.965 55.000 0.00 0.00 0.00 3.33
323 324 0.320697 GAGTAGTTGAGGGGCGTGTT 59.679 55.000 0.00 0.00 0.00 3.32
324 325 0.542232 AGAGTAGTTGAGGGGCGTGT 60.542 55.000 0.00 0.00 0.00 4.49
325 326 0.608640 AAGAGTAGTTGAGGGGCGTG 59.391 55.000 0.00 0.00 0.00 5.34
326 327 0.608640 CAAGAGTAGTTGAGGGGCGT 59.391 55.000 0.00 0.00 0.00 5.68
327 328 0.108138 CCAAGAGTAGTTGAGGGGCG 60.108 60.000 0.00 0.00 0.00 6.13
328 329 0.393132 GCCAAGAGTAGTTGAGGGGC 60.393 60.000 0.00 0.00 0.00 5.80
329 330 0.108138 CGCCAAGAGTAGTTGAGGGG 60.108 60.000 0.00 0.00 0.00 4.79
330 331 0.895530 TCGCCAAGAGTAGTTGAGGG 59.104 55.000 0.00 0.00 0.00 4.30
331 332 2.796383 CGATCGCCAAGAGTAGTTGAGG 60.796 54.545 0.26 0.00 0.00 3.86
332 333 2.159366 ACGATCGCCAAGAGTAGTTGAG 60.159 50.000 16.60 0.00 0.00 3.02
333 334 1.816835 ACGATCGCCAAGAGTAGTTGA 59.183 47.619 16.60 0.00 0.00 3.18
334 335 2.159366 AGACGATCGCCAAGAGTAGTTG 60.159 50.000 16.60 0.00 0.00 3.16
335 336 2.093106 AGACGATCGCCAAGAGTAGTT 58.907 47.619 16.60 0.00 0.00 2.24
336 337 1.752683 AGACGATCGCCAAGAGTAGT 58.247 50.000 16.60 0.00 0.00 2.73
337 338 2.853731 AAGACGATCGCCAAGAGTAG 57.146 50.000 16.60 0.00 0.00 2.57
338 339 3.276857 ACTAAGACGATCGCCAAGAGTA 58.723 45.455 16.60 0.00 0.00 2.59
339 340 2.093106 ACTAAGACGATCGCCAAGAGT 58.907 47.619 16.60 9.58 0.00 3.24
340 341 2.853731 ACTAAGACGATCGCCAAGAG 57.146 50.000 16.60 8.92 0.00 2.85
341 342 4.135306 AGATACTAAGACGATCGCCAAGA 58.865 43.478 16.60 0.00 0.00 3.02
342 343 4.491234 AGATACTAAGACGATCGCCAAG 57.509 45.455 16.60 8.61 0.00 3.61
343 344 4.337274 TGAAGATACTAAGACGATCGCCAA 59.663 41.667 16.60 0.00 0.00 4.52
344 345 3.881089 TGAAGATACTAAGACGATCGCCA 59.119 43.478 16.60 0.00 0.00 5.69
345 346 4.468643 CTGAAGATACTAAGACGATCGCC 58.531 47.826 16.60 3.44 0.00 5.54
346 347 4.468643 CCTGAAGATACTAAGACGATCGC 58.531 47.826 16.60 8.27 0.00 4.58
347 348 4.083217 CCCCTGAAGATACTAAGACGATCG 60.083 50.000 14.88 14.88 0.00 3.69
348 349 4.321378 GCCCCTGAAGATACTAAGACGATC 60.321 50.000 0.00 0.00 0.00 3.69
349 350 3.574826 GCCCCTGAAGATACTAAGACGAT 59.425 47.826 0.00 0.00 0.00 3.73
350 351 2.957006 GCCCCTGAAGATACTAAGACGA 59.043 50.000 0.00 0.00 0.00 4.20
351 352 2.287668 CGCCCCTGAAGATACTAAGACG 60.288 54.545 0.00 0.00 0.00 4.18
352 353 2.546162 GCGCCCCTGAAGATACTAAGAC 60.546 54.545 0.00 0.00 0.00 3.01
353 354 1.687123 GCGCCCCTGAAGATACTAAGA 59.313 52.381 0.00 0.00 0.00 2.10
354 355 1.270358 GGCGCCCCTGAAGATACTAAG 60.270 57.143 18.11 0.00 0.00 2.18
355 356 0.756903 GGCGCCCCTGAAGATACTAA 59.243 55.000 18.11 0.00 0.00 2.24
356 357 1.461091 CGGCGCCCCTGAAGATACTA 61.461 60.000 23.46 0.00 0.00 1.82
357 358 2.797278 CGGCGCCCCTGAAGATACT 61.797 63.158 23.46 0.00 0.00 2.12
358 359 2.280186 CGGCGCCCCTGAAGATAC 60.280 66.667 23.46 0.00 0.00 2.24
359 360 4.235762 GCGGCGCCCCTGAAGATA 62.236 66.667 23.58 0.00 0.00 1.98
379 380 1.302192 TTTGTGTCAGCGGCCTACC 60.302 57.895 0.00 0.00 0.00 3.18
380 381 0.882927 TGTTTGTGTCAGCGGCCTAC 60.883 55.000 0.00 0.00 0.00 3.18
381 382 0.882927 GTGTTTGTGTCAGCGGCCTA 60.883 55.000 0.00 0.00 0.00 3.93
382 383 2.186826 GTGTTTGTGTCAGCGGCCT 61.187 57.895 0.00 0.00 0.00 5.19
383 384 1.795170 ATGTGTTTGTGTCAGCGGCC 61.795 55.000 0.00 0.00 0.00 6.13
384 385 0.030638 AATGTGTTTGTGTCAGCGGC 59.969 50.000 0.00 0.00 0.00 6.53
385 386 1.600164 CCAATGTGTTTGTGTCAGCGG 60.600 52.381 0.00 0.00 33.15 5.52
386 387 1.065401 ACCAATGTGTTTGTGTCAGCG 59.935 47.619 0.00 0.00 33.15 5.18
387 388 2.731217 GACCAATGTGTTTGTGTCAGC 58.269 47.619 0.00 0.00 36.41 4.26
388 389 2.854424 GCGACCAATGTGTTTGTGTCAG 60.854 50.000 0.00 0.00 36.28 3.51
389 390 1.064803 GCGACCAATGTGTTTGTGTCA 59.935 47.619 0.00 0.00 36.28 3.58
390 391 1.064803 TGCGACCAATGTGTTTGTGTC 59.935 47.619 0.00 0.00 34.66 3.67
391 392 1.098869 TGCGACCAATGTGTTTGTGT 58.901 45.000 0.00 0.00 33.15 3.72
392 393 2.052891 CATGCGACCAATGTGTTTGTG 58.947 47.619 0.00 0.00 33.15 3.33
393 394 1.680735 ACATGCGACCAATGTGTTTGT 59.319 42.857 0.00 0.00 33.15 2.83
394 395 2.420628 ACATGCGACCAATGTGTTTG 57.579 45.000 0.00 0.00 34.93 2.93
395 396 3.451141 AAACATGCGACCAATGTGTTT 57.549 38.095 0.00 0.00 37.96 2.83
396 397 3.608241 CGTAAACATGCGACCAATGTGTT 60.608 43.478 0.00 0.00 34.74 3.32
397 398 2.095969 CGTAAACATGCGACCAATGTGT 60.096 45.455 0.00 0.00 0.00 3.72
398 399 2.158645 TCGTAAACATGCGACCAATGTG 59.841 45.455 0.00 0.00 31.76 3.21
399 400 2.418692 TCGTAAACATGCGACCAATGT 58.581 42.857 0.00 0.00 31.76 2.71
406 407 1.717113 CTCAACGTCGTAAACATGCGA 59.283 47.619 0.00 0.00 34.54 5.10
407 408 1.201769 CCTCAACGTCGTAAACATGCG 60.202 52.381 0.00 0.00 0.00 4.73
408 409 2.063266 TCCTCAACGTCGTAAACATGC 58.937 47.619 0.00 0.00 0.00 4.06
409 410 3.678072 ACATCCTCAACGTCGTAAACATG 59.322 43.478 0.00 0.78 0.00 3.21
410 411 3.921677 ACATCCTCAACGTCGTAAACAT 58.078 40.909 0.00 0.00 0.00 2.71
411 412 3.311106 GACATCCTCAACGTCGTAAACA 58.689 45.455 0.00 0.00 0.00 2.83
412 413 2.665052 GGACATCCTCAACGTCGTAAAC 59.335 50.000 0.00 0.00 0.00 2.01
413 414 2.353011 GGGACATCCTCAACGTCGTAAA 60.353 50.000 0.00 0.00 35.95 2.01
414 415 1.203052 GGGACATCCTCAACGTCGTAA 59.797 52.381 0.00 0.00 35.95 3.18
415 416 0.813184 GGGACATCCTCAACGTCGTA 59.187 55.000 0.00 0.00 35.95 3.43
696 4429 0.609406 CTCGGGTGGAGACAGACAGA 60.609 60.000 0.00 0.00 46.23 3.41
952 6015 4.260355 CGTAATCGAGGCGGCGGA 62.260 66.667 9.78 5.70 39.71 5.54
1221 6294 4.148825 GAGATGTCCCCGCACGCT 62.149 66.667 0.00 0.00 0.00 5.07
1389 6462 2.046892 ACGAGGCGCTGCATCTTT 60.047 55.556 7.64 0.00 37.20 2.52
1518 6591 2.686835 ACCTCCTGCCTCTGCCTC 60.687 66.667 0.00 0.00 36.33 4.70
1549 6622 4.070552 GTTCCAGAGCGAGGCCGT 62.071 66.667 0.00 0.00 38.24 5.68
1617 6690 0.668535 CCTGTATGATCCTCGCGACA 59.331 55.000 3.71 1.07 0.00 4.35
1633 6706 1.364626 GGCTGCAGATCGAACACCTG 61.365 60.000 20.43 0.00 0.00 4.00
1635 6708 2.109126 GGGCTGCAGATCGAACACC 61.109 63.158 20.43 6.00 0.00 4.16
1644 6717 1.167851 CGATTTTCTTGGGCTGCAGA 58.832 50.000 20.43 0.00 0.00 4.26
1743 6816 2.505819 AGAGGGATACACCAGCGAATTT 59.494 45.455 0.00 0.00 41.20 1.82
1799 6872 1.135402 CCTTACCGGATTTTGCAGCAC 60.135 52.381 9.46 0.00 33.16 4.40
2874 8012 2.820197 GCCCTAAGACACTTCTTTTGGG 59.180 50.000 15.38 15.38 46.69 4.12
2881 8019 4.207891 TGAAGATGCCCTAAGACACTTC 57.792 45.455 0.00 0.00 34.72 3.01
2935 8085 8.903820 AGCGCTTGGATATTTCTTTAGTTTTAT 58.096 29.630 2.64 0.00 0.00 1.40
2990 8140 1.625818 CCCATTCTTCCTAGCGCCTAT 59.374 52.381 2.29 0.00 0.00 2.57
3053 8203 2.879233 AAGAAGTGGAAGCGGGCGA 61.879 57.895 0.00 0.00 0.00 5.54
3074 8224 1.349627 CGTCACATGAAGCATCGGC 59.650 57.895 0.00 0.00 41.61 5.54
3076 8226 4.961622 GCGTCACATGAAGCATCG 57.038 55.556 13.89 0.29 46.36 3.84
3104 8490 1.682087 GGTAGAATGGCAGTTGGACCC 60.682 57.143 0.00 0.00 0.00 4.46
3117 8503 3.933861 AAGCAAGATTCCCGGTAGAAT 57.066 42.857 5.72 5.72 39.19 2.40
3127 8513 6.422776 TCCGTCTCAAAATAAGCAAGATTC 57.577 37.500 0.00 0.00 0.00 2.52
3131 8517 3.484229 CGCTCCGTCTCAAAATAAGCAAG 60.484 47.826 0.00 0.00 0.00 4.01
3132 8518 2.415168 CGCTCCGTCTCAAAATAAGCAA 59.585 45.455 0.00 0.00 0.00 3.91
3133 8519 1.999735 CGCTCCGTCTCAAAATAAGCA 59.000 47.619 0.00 0.00 0.00 3.91
3134 8520 2.268298 TCGCTCCGTCTCAAAATAAGC 58.732 47.619 0.00 0.00 0.00 3.09
3147 8605 2.223502 TGCAAATCTAGTACTCGCTCCG 60.224 50.000 0.00 0.00 0.00 4.63
3152 8610 6.893958 ACATTTCTGCAAATCTAGTACTCG 57.106 37.500 0.00 0.00 28.97 4.18
3569 9036 6.017687 TGCTAATCATTCCGAATTCATGTGAG 60.018 38.462 6.22 3.34 0.00 3.51
3613 9080 5.106712 GGTTTATCTTTGCTCAATGACGACA 60.107 40.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.