Multiple sequence alignment - TraesCS5B01G130200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G130200 chr5B 100.000 3500 0 0 1 3500 241519317 241515818 0.000000e+00 6464.0
1 TraesCS5B01G130200 chr5B 83.529 340 52 3 1 339 57956998 57957334 7.290000e-82 315.0
2 TraesCS5B01G130200 chr5A 92.524 2595 140 22 940 3490 291930165 291927581 0.000000e+00 3668.0
3 TraesCS5B01G130200 chr5A 91.398 558 44 3 343 897 291930722 291930166 0.000000e+00 761.0
4 TraesCS5B01G130200 chr5A 91.489 47 4 0 367 413 684697142 684697096 8.110000e-07 65.8
5 TraesCS5B01G130200 chr5D 96.818 1603 51 0 942 2544 218695368 218693766 0.000000e+00 2678.0
6 TraesCS5B01G130200 chr5D 90.000 940 56 12 2542 3478 218693738 218692834 0.000000e+00 1181.0
7 TraesCS5B01G130200 chr5D 89.860 572 37 14 342 897 218695937 218695371 0.000000e+00 715.0
8 TraesCS5B01G130200 chr5D 82.720 353 53 5 1 353 35288489 35288145 1.220000e-79 307.0
9 TraesCS5B01G130200 chr5D 97.917 48 1 0 897 944 557210992 557211039 2.240000e-12 84.2
10 TraesCS5B01G130200 chr4A 91.290 310 26 1 1 310 68752447 68752755 4.180000e-114 422.0
11 TraesCS5B01G130200 chr3B 85.758 330 45 2 1 329 588861450 588861122 7.190000e-92 348.0
12 TraesCS5B01G130200 chr3B 98.039 51 0 1 898 947 598070279 598070229 1.730000e-13 87.9
13 TraesCS5B01G130200 chr6B 85.088 342 41 9 1 335 46824587 46824925 1.200000e-89 340.0
14 TraesCS5B01G130200 chr6B 83.432 338 54 2 2 338 41978961 41978625 2.620000e-81 313.0
15 TraesCS5B01G130200 chr6B 85.075 67 7 3 494 559 687531985 687532049 8.110000e-07 65.8
16 TraesCS5B01G130200 chr7D 84.661 339 49 3 1 338 379318366 379318030 5.600000e-88 335.0
17 TraesCS5B01G130200 chr3D 83.578 341 50 4 1 340 575233825 575234160 7.290000e-82 315.0
18 TraesCS5B01G130200 chr1D 83.631 336 53 2 1 335 410736606 410736940 7.290000e-82 315.0
19 TraesCS5B01G130200 chr2B 89.593 221 23 0 3043 3263 726684282 726684502 7.400000e-72 281.0
20 TraesCS5B01G130200 chr2B 80.387 362 29 22 2419 2749 726670993 726671343 1.620000e-58 237.0
21 TraesCS5B01G130200 chr2B 98.000 50 1 0 892 941 402678848 402678799 1.730000e-13 87.9
22 TraesCS5B01G130200 chr2B 97.917 48 1 0 897 944 134608188 134608235 2.240000e-12 84.2
23 TraesCS5B01G130200 chr2B 96.078 51 2 0 897 947 184777034 184777084 2.240000e-12 84.2
24 TraesCS5B01G130200 chr1A 79.739 153 28 2 439 589 567640715 567640564 1.330000e-19 108.0
25 TraesCS5B01G130200 chr6A 98.000 50 1 0 897 946 473616576 473616527 1.730000e-13 87.9
26 TraesCS5B01G130200 chr7A 97.959 49 1 0 897 945 68186918 68186966 6.220000e-13 86.1
27 TraesCS5B01G130200 chr2A 80.952 105 14 5 480 582 156770873 156770773 1.040000e-10 78.7
28 TraesCS5B01G130200 chr2A 80.952 105 14 5 480 582 156773868 156773768 1.040000e-10 78.7
29 TraesCS5B01G130200 chr2D 86.957 69 5 3 897 965 55399216 55399152 1.350000e-09 75.0
30 TraesCS5B01G130200 chr1B 85.915 71 8 2 897 965 286320532 286320462 1.350000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G130200 chr5B 241515818 241519317 3499 True 6464.000000 6464 100.000 1 3500 1 chr5B.!!$R1 3499
1 TraesCS5B01G130200 chr5A 291927581 291930722 3141 True 2214.500000 3668 91.961 343 3490 2 chr5A.!!$R2 3147
2 TraesCS5B01G130200 chr5D 218692834 218695937 3103 True 1524.666667 2678 92.226 342 3478 3 chr5D.!!$R2 3136

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.035056 ATTGCCTCTCTTGGTTCGGG 60.035 55.0 0.0 0.0 0.0 5.14 F
260 261 0.161658 GTGTGCGTTCGTGTCATGAG 59.838 55.0 0.0 0.0 0.0 2.90 F
1331 1352 0.170561 GCTACGCTCTCCTTCGACAA 59.829 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 1266 0.903454 GGAAGGACGAAGGGAGGTGA 60.903 60.000 0.00 0.0 0.0 4.02 R
2073 2094 1.374631 CAGCTGCTCCTTGTACGCA 60.375 57.895 0.00 0.0 0.0 5.24 R
2756 2816 0.250295 CCACCGGATTGACGCCATAT 60.250 55.000 9.46 0.0 0.0 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.159108 CCCTAGGGTCCGGCTCCT 62.159 72.222 20.88 17.48 37.18 3.69
22 23 2.522193 CCTAGGGTCCGGCTCCTC 60.522 72.222 16.98 7.13 34.75 3.71
23 24 2.522193 CTAGGGTCCGGCTCCTCC 60.522 72.222 16.98 4.75 34.75 4.30
24 25 3.028098 TAGGGTCCGGCTCCTCCT 61.028 66.667 16.98 11.23 34.75 3.69
25 26 3.375443 TAGGGTCCGGCTCCTCCTG 62.375 68.421 16.98 0.00 34.75 3.86
26 27 4.779733 GGGTCCGGCTCCTCCTGA 62.780 72.222 13.65 0.00 0.00 3.86
27 28 2.444895 GGTCCGGCTCCTCCTGAT 60.445 66.667 0.00 0.00 30.52 2.90
28 29 2.503382 GGTCCGGCTCCTCCTGATC 61.503 68.421 0.00 0.00 30.52 2.92
29 30 2.519541 TCCGGCTCCTCCTGATCG 60.520 66.667 0.00 0.00 0.00 3.69
30 31 3.610669 CCGGCTCCTCCTGATCGG 61.611 72.222 0.00 0.00 34.76 4.18
31 32 2.519541 CGGCTCCTCCTGATCGGA 60.520 66.667 2.08 4.61 40.30 4.55
32 33 1.905843 CGGCTCCTCCTGATCGGAT 60.906 63.158 2.08 0.00 42.12 4.18
33 34 1.670590 GGCTCCTCCTGATCGGATG 59.329 63.158 2.08 3.07 42.12 3.51
34 35 1.670590 GCTCCTCCTGATCGGATGG 59.329 63.158 2.08 4.81 42.12 3.51
35 36 1.670590 CTCCTCCTGATCGGATGGC 59.329 63.158 2.08 0.00 42.12 4.40
36 37 2.152297 CTCCTCCTGATCGGATGGCG 62.152 65.000 2.08 0.00 42.12 5.69
37 38 2.203082 CCTCCTGATCGGATGGCGA 61.203 63.158 2.08 0.00 42.12 5.54
38 39 1.006805 CTCCTGATCGGATGGCGAC 60.007 63.158 2.08 0.00 42.12 5.19
39 40 2.355126 CCTGATCGGATGGCGACG 60.355 66.667 2.08 0.00 33.16 5.12
40 41 2.355126 CTGATCGGATGGCGACGG 60.355 66.667 0.00 0.00 0.00 4.79
41 42 4.585526 TGATCGGATGGCGACGGC 62.586 66.667 15.43 15.43 38.90 5.68
57 58 4.755614 GCGTCTCGGCGTCGTCTT 62.756 66.667 10.18 0.00 37.69 3.01
58 59 2.573689 CGTCTCGGCGTCGTCTTC 60.574 66.667 10.18 0.00 37.69 2.87
59 60 2.202453 GTCTCGGCGTCGTCTTCC 60.202 66.667 10.18 0.00 37.69 3.46
60 61 2.359602 TCTCGGCGTCGTCTTCCT 60.360 61.111 10.18 0.00 37.69 3.36
61 62 1.970114 TCTCGGCGTCGTCTTCCTT 60.970 57.895 10.18 0.00 37.69 3.36
62 63 1.514443 CTCGGCGTCGTCTTCCTTC 60.514 63.158 10.18 0.00 37.69 3.46
63 64 1.924320 CTCGGCGTCGTCTTCCTTCT 61.924 60.000 10.18 0.00 37.69 2.85
64 65 1.080705 CGGCGTCGTCTTCCTTCTT 60.081 57.895 0.00 0.00 0.00 2.52
65 66 1.344942 CGGCGTCGTCTTCCTTCTTG 61.345 60.000 0.00 0.00 0.00 3.02
66 67 0.038526 GGCGTCGTCTTCCTTCTTGA 60.039 55.000 0.00 0.00 0.00 3.02
67 68 1.604693 GGCGTCGTCTTCCTTCTTGAA 60.605 52.381 0.00 0.00 0.00 2.69
68 69 1.721926 GCGTCGTCTTCCTTCTTGAAG 59.278 52.381 3.55 3.55 42.52 3.02
69 70 2.329379 CGTCGTCTTCCTTCTTGAAGG 58.671 52.381 20.21 20.21 41.67 3.46
70 71 2.030185 CGTCGTCTTCCTTCTTGAAGGA 60.030 50.000 23.69 23.69 46.67 3.36
79 80 5.350504 TCCTTCTTGAAGGAGCTATCTTG 57.649 43.478 23.69 0.14 43.68 3.02
80 81 3.876320 CCTTCTTGAAGGAGCTATCTTGC 59.124 47.826 21.34 0.98 42.62 4.01
81 82 6.575496 TCCTTCTTGAAGGAGCTATCTTGCT 61.575 44.000 23.69 0.00 43.68 3.91
88 89 1.299773 AGCTATCTTGCTCGCTCGC 60.300 57.895 0.00 0.00 39.34 5.03
89 90 2.643644 GCTATCTTGCTCGCTCGCG 61.644 63.158 0.00 0.00 41.35 5.87
90 91 2.013483 CTATCTTGCTCGCTCGCGG 61.013 63.158 6.13 0.00 40.25 6.46
91 92 2.669808 CTATCTTGCTCGCTCGCGGT 62.670 60.000 6.13 0.00 40.25 5.68
92 93 2.936829 TATCTTGCTCGCTCGCGGTG 62.937 60.000 6.13 3.77 40.25 4.94
117 118 3.680642 CGATTTCGGCTCAAATGATGT 57.319 42.857 0.00 0.00 35.37 3.06
118 119 4.019919 CGATTTCGGCTCAAATGATGTT 57.980 40.909 0.00 0.00 35.37 2.71
119 120 3.787634 CGATTTCGGCTCAAATGATGTTG 59.212 43.478 0.00 0.00 35.37 3.33
120 121 3.574284 TTTCGGCTCAAATGATGTTGG 57.426 42.857 0.00 0.00 0.00 3.77
121 122 2.488204 TCGGCTCAAATGATGTTGGA 57.512 45.000 0.00 0.00 0.00 3.53
122 123 2.358957 TCGGCTCAAATGATGTTGGAG 58.641 47.619 0.00 0.00 0.00 3.86
123 124 2.086869 CGGCTCAAATGATGTTGGAGT 58.913 47.619 0.00 0.00 0.00 3.85
124 125 2.489329 CGGCTCAAATGATGTTGGAGTT 59.511 45.455 0.00 0.00 0.00 3.01
125 126 3.426695 CGGCTCAAATGATGTTGGAGTTC 60.427 47.826 0.00 0.00 0.00 3.01
126 127 3.119352 GGCTCAAATGATGTTGGAGTTCC 60.119 47.826 0.00 0.00 0.00 3.62
127 128 3.760684 GCTCAAATGATGTTGGAGTTCCT 59.239 43.478 0.00 0.00 36.82 3.36
128 129 4.380233 GCTCAAATGATGTTGGAGTTCCTG 60.380 45.833 0.00 0.00 36.82 3.86
129 130 4.728772 TCAAATGATGTTGGAGTTCCTGT 58.271 39.130 0.00 0.00 36.82 4.00
130 131 5.139727 TCAAATGATGTTGGAGTTCCTGTT 58.860 37.500 0.00 0.00 36.82 3.16
131 132 5.009911 TCAAATGATGTTGGAGTTCCTGTTG 59.990 40.000 0.00 0.00 36.82 3.33
132 133 3.855255 TGATGTTGGAGTTCCTGTTGA 57.145 42.857 0.00 0.00 36.82 3.18
133 134 4.371624 TGATGTTGGAGTTCCTGTTGAT 57.628 40.909 0.00 0.00 36.82 2.57
134 135 4.728772 TGATGTTGGAGTTCCTGTTGATT 58.271 39.130 0.00 0.00 36.82 2.57
135 136 4.761739 TGATGTTGGAGTTCCTGTTGATTC 59.238 41.667 0.00 0.00 36.82 2.52
136 137 3.138304 TGTTGGAGTTCCTGTTGATTCG 58.862 45.455 0.00 0.00 36.82 3.34
137 138 2.472695 TGGAGTTCCTGTTGATTCGG 57.527 50.000 0.00 0.00 36.82 4.30
138 139 1.087501 GGAGTTCCTGTTGATTCGGC 58.912 55.000 0.00 0.00 0.00 5.54
139 140 1.610624 GGAGTTCCTGTTGATTCGGCA 60.611 52.381 0.00 0.00 0.00 5.69
140 141 2.359900 GAGTTCCTGTTGATTCGGCAT 58.640 47.619 0.00 0.00 0.00 4.40
141 142 2.749621 GAGTTCCTGTTGATTCGGCATT 59.250 45.455 0.00 0.00 0.00 3.56
142 143 2.489329 AGTTCCTGTTGATTCGGCATTG 59.511 45.455 0.00 0.00 0.00 2.82
143 144 0.810648 TCCTGTTGATTCGGCATTGC 59.189 50.000 0.00 0.00 0.00 3.56
144 145 0.179129 CCTGTTGATTCGGCATTGCC 60.179 55.000 18.10 18.10 46.75 4.52
153 154 4.751431 GGCATTGCCTCTCTTGGT 57.249 55.556 20.66 0.00 46.69 3.67
154 155 2.967270 GGCATTGCCTCTCTTGGTT 58.033 52.632 20.66 0.00 46.69 3.67
155 156 0.813821 GGCATTGCCTCTCTTGGTTC 59.186 55.000 20.66 0.00 46.69 3.62
156 157 0.449388 GCATTGCCTCTCTTGGTTCG 59.551 55.000 0.00 0.00 0.00 3.95
157 158 1.089920 CATTGCCTCTCTTGGTTCGG 58.910 55.000 0.00 0.00 0.00 4.30
158 159 0.035056 ATTGCCTCTCTTGGTTCGGG 60.035 55.000 0.00 0.00 0.00 5.14
159 160 2.436824 GCCTCTCTTGGTTCGGGC 60.437 66.667 0.00 0.00 0.00 6.13
160 161 2.960688 GCCTCTCTTGGTTCGGGCT 61.961 63.158 0.00 0.00 36.96 5.19
161 162 1.679898 CCTCTCTTGGTTCGGGCTT 59.320 57.895 0.00 0.00 0.00 4.35
162 163 0.674895 CCTCTCTTGGTTCGGGCTTG 60.675 60.000 0.00 0.00 0.00 4.01
163 164 0.674895 CTCTCTTGGTTCGGGCTTGG 60.675 60.000 0.00 0.00 0.00 3.61
164 165 1.073199 CTCTTGGTTCGGGCTTGGT 59.927 57.895 0.00 0.00 0.00 3.67
165 166 0.323629 CTCTTGGTTCGGGCTTGGTA 59.676 55.000 0.00 0.00 0.00 3.25
166 167 0.323629 TCTTGGTTCGGGCTTGGTAG 59.676 55.000 0.00 0.00 0.00 3.18
167 168 0.676782 CTTGGTTCGGGCTTGGTAGG 60.677 60.000 0.00 0.00 0.00 3.18
168 169 1.420532 TTGGTTCGGGCTTGGTAGGT 61.421 55.000 0.00 0.00 0.00 3.08
169 170 1.377612 GGTTCGGGCTTGGTAGGTT 59.622 57.895 0.00 0.00 0.00 3.50
170 171 0.251033 GGTTCGGGCTTGGTAGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
171 172 1.003464 GGTTCGGGCTTGGTAGGTTTA 59.997 52.381 0.00 0.00 0.00 2.01
172 173 2.353323 GTTCGGGCTTGGTAGGTTTAG 58.647 52.381 0.00 0.00 0.00 1.85
173 174 0.251073 TCGGGCTTGGTAGGTTTAGC 59.749 55.000 0.00 0.00 0.00 3.09
174 175 0.252197 CGGGCTTGGTAGGTTTAGCT 59.748 55.000 0.00 0.00 34.16 3.32
175 176 1.483415 CGGGCTTGGTAGGTTTAGCTA 59.517 52.381 0.00 0.00 34.16 3.32
176 177 2.104281 CGGGCTTGGTAGGTTTAGCTAT 59.896 50.000 0.00 0.00 34.16 2.97
177 178 3.477530 GGGCTTGGTAGGTTTAGCTATG 58.522 50.000 0.00 0.00 34.16 2.23
178 179 3.135895 GGGCTTGGTAGGTTTAGCTATGA 59.864 47.826 0.00 0.00 34.16 2.15
179 180 4.202472 GGGCTTGGTAGGTTTAGCTATGAT 60.202 45.833 0.00 0.00 34.16 2.45
180 181 4.757149 GGCTTGGTAGGTTTAGCTATGATG 59.243 45.833 0.00 0.00 34.16 3.07
181 182 4.214332 GCTTGGTAGGTTTAGCTATGATGC 59.786 45.833 0.00 0.00 0.00 3.91
182 183 5.366482 TTGGTAGGTTTAGCTATGATGCA 57.634 39.130 0.00 0.00 34.99 3.96
183 184 5.567037 TGGTAGGTTTAGCTATGATGCAT 57.433 39.130 0.00 0.00 34.99 3.96
184 185 5.551233 TGGTAGGTTTAGCTATGATGCATC 58.449 41.667 20.14 20.14 34.99 3.91
185 186 4.938226 GGTAGGTTTAGCTATGATGCATCC 59.062 45.833 23.67 8.35 34.99 3.51
186 187 4.989875 AGGTTTAGCTATGATGCATCCT 57.010 40.909 23.67 16.51 34.99 3.24
187 188 5.316158 AGGTTTAGCTATGATGCATCCTT 57.684 39.130 23.67 13.58 34.99 3.36
188 189 5.699143 AGGTTTAGCTATGATGCATCCTTT 58.301 37.500 23.67 11.14 34.99 3.11
189 190 5.533903 AGGTTTAGCTATGATGCATCCTTTG 59.466 40.000 23.67 12.84 34.99 2.77
190 191 5.300286 GGTTTAGCTATGATGCATCCTTTGT 59.700 40.000 23.67 8.51 34.99 2.83
191 192 6.183360 GGTTTAGCTATGATGCATCCTTTGTT 60.183 38.462 23.67 12.18 34.99 2.83
192 193 6.624352 TTAGCTATGATGCATCCTTTGTTC 57.376 37.500 23.67 6.73 34.99 3.18
193 194 4.529897 AGCTATGATGCATCCTTTGTTCA 58.470 39.130 23.67 4.43 34.99 3.18
194 195 4.579340 AGCTATGATGCATCCTTTGTTCAG 59.421 41.667 23.67 8.30 34.99 3.02
195 196 4.261489 GCTATGATGCATCCTTTGTTCAGG 60.261 45.833 23.67 3.21 34.86 3.86
196 197 1.820519 TGATGCATCCTTTGTTCAGGC 59.179 47.619 23.67 0.00 33.35 4.85
197 198 2.097825 GATGCATCCTTTGTTCAGGCT 58.902 47.619 16.23 0.00 33.35 4.58
198 199 1.250328 TGCATCCTTTGTTCAGGCTG 58.750 50.000 8.58 8.58 33.77 4.85
199 200 1.202915 TGCATCCTTTGTTCAGGCTGA 60.203 47.619 14.43 14.43 32.54 4.26
200 201 1.471684 GCATCCTTTGTTCAGGCTGAG 59.528 52.381 17.91 5.50 32.54 3.35
201 202 1.471684 CATCCTTTGTTCAGGCTGAGC 59.528 52.381 22.66 22.66 32.54 4.26
202 203 0.473755 TCCTTTGTTCAGGCTGAGCA 59.526 50.000 27.24 27.24 35.80 4.26
203 204 1.074405 TCCTTTGTTCAGGCTGAGCAT 59.926 47.619 30.44 0.00 37.44 3.79
204 205 1.891150 CCTTTGTTCAGGCTGAGCATT 59.109 47.619 30.44 0.00 37.44 3.56
205 206 2.094854 CCTTTGTTCAGGCTGAGCATTC 60.095 50.000 30.44 14.45 37.44 2.67
206 207 1.538047 TTGTTCAGGCTGAGCATTCC 58.462 50.000 30.44 11.03 37.44 3.01
207 208 0.694771 TGTTCAGGCTGAGCATTCCT 59.305 50.000 27.24 0.00 32.63 3.36
208 209 1.074405 TGTTCAGGCTGAGCATTCCTT 59.926 47.619 27.24 0.00 32.63 3.36
209 210 1.471684 GTTCAGGCTGAGCATTCCTTG 59.528 52.381 24.17 0.00 0.00 3.61
210 211 0.694771 TCAGGCTGAGCATTCCTTGT 59.305 50.000 14.43 0.00 0.00 3.16
211 212 1.093159 CAGGCTGAGCATTCCTTGTC 58.907 55.000 9.42 0.00 0.00 3.18
212 213 0.990374 AGGCTGAGCATTCCTTGTCT 59.010 50.000 6.82 0.00 0.00 3.41
213 214 1.065564 AGGCTGAGCATTCCTTGTCTC 60.066 52.381 6.82 0.00 0.00 3.36
214 215 1.065564 GGCTGAGCATTCCTTGTCTCT 60.066 52.381 6.82 0.00 32.80 3.10
215 216 2.278854 GCTGAGCATTCCTTGTCTCTC 58.721 52.381 0.00 0.00 32.80 3.20
216 217 2.093553 GCTGAGCATTCCTTGTCTCTCT 60.094 50.000 0.00 0.00 32.80 3.10
217 218 3.523547 CTGAGCATTCCTTGTCTCTCTG 58.476 50.000 0.00 0.00 32.80 3.35
218 219 2.278854 GAGCATTCCTTGTCTCTCTGC 58.721 52.381 0.00 0.00 0.00 4.26
219 220 1.907936 AGCATTCCTTGTCTCTCTGCT 59.092 47.619 0.00 0.00 33.89 4.24
220 221 2.093553 AGCATTCCTTGTCTCTCTGCTC 60.094 50.000 0.00 0.00 33.47 4.26
221 222 2.903798 CATTCCTTGTCTCTCTGCTCC 58.096 52.381 0.00 0.00 0.00 4.70
222 223 0.891373 TTCCTTGTCTCTCTGCTCCG 59.109 55.000 0.00 0.00 0.00 4.63
223 224 0.967887 TCCTTGTCTCTCTGCTCCGG 60.968 60.000 0.00 0.00 0.00 5.14
224 225 1.515020 CTTGTCTCTCTGCTCCGGG 59.485 63.158 0.00 0.00 0.00 5.73
225 226 2.570582 CTTGTCTCTCTGCTCCGGGC 62.571 65.000 0.00 4.52 42.22 6.13
241 242 3.399879 GGCACCATGTTTACGCTTG 57.600 52.632 0.00 0.00 0.00 4.01
242 243 0.596082 GGCACCATGTTTACGCTTGT 59.404 50.000 0.00 0.00 0.00 3.16
243 244 1.665735 GGCACCATGTTTACGCTTGTG 60.666 52.381 0.00 0.00 0.00 3.33
244 245 1.001815 GCACCATGTTTACGCTTGTGT 60.002 47.619 0.00 0.00 0.00 3.72
245 246 2.649516 CACCATGTTTACGCTTGTGTG 58.350 47.619 0.00 0.00 0.00 3.82
246 247 1.001815 ACCATGTTTACGCTTGTGTGC 60.002 47.619 0.00 0.00 0.00 4.57
254 255 2.707039 GCTTGTGTGCGTTCGTGT 59.293 55.556 0.00 0.00 0.00 4.49
255 256 1.367665 GCTTGTGTGCGTTCGTGTC 60.368 57.895 0.00 0.00 0.00 3.67
256 257 2.002899 CTTGTGTGCGTTCGTGTCA 58.997 52.632 0.00 0.00 0.00 3.58
257 258 0.581529 CTTGTGTGCGTTCGTGTCAT 59.418 50.000 0.00 0.00 0.00 3.06
258 259 0.303191 TTGTGTGCGTTCGTGTCATG 59.697 50.000 0.00 0.00 0.00 3.07
259 260 0.528684 TGTGTGCGTTCGTGTCATGA 60.529 50.000 0.00 0.00 0.00 3.07
260 261 0.161658 GTGTGCGTTCGTGTCATGAG 59.838 55.000 0.00 0.00 0.00 2.90
261 262 0.249280 TGTGCGTTCGTGTCATGAGT 60.249 50.000 0.00 0.00 0.00 3.41
262 263 0.859232 GTGCGTTCGTGTCATGAGTT 59.141 50.000 0.00 0.00 0.00 3.01
263 264 0.858583 TGCGTTCGTGTCATGAGTTG 59.141 50.000 0.00 0.00 0.00 3.16
264 265 0.859232 GCGTTCGTGTCATGAGTTGT 59.141 50.000 0.00 0.00 0.00 3.32
265 266 2.055838 GCGTTCGTGTCATGAGTTGTA 58.944 47.619 0.00 0.00 0.00 2.41
266 267 2.666508 GCGTTCGTGTCATGAGTTGTAT 59.333 45.455 0.00 0.00 0.00 2.29
267 268 3.241678 GCGTTCGTGTCATGAGTTGTATC 60.242 47.826 0.00 0.00 0.00 2.24
268 269 3.303495 CGTTCGTGTCATGAGTTGTATCC 59.697 47.826 0.00 0.00 0.00 2.59
269 270 3.520290 TCGTGTCATGAGTTGTATCCC 57.480 47.619 0.00 0.00 0.00 3.85
270 271 3.096852 TCGTGTCATGAGTTGTATCCCT 58.903 45.455 0.00 0.00 0.00 4.20
271 272 3.130516 TCGTGTCATGAGTTGTATCCCTC 59.869 47.826 0.00 0.00 0.00 4.30
272 273 3.448686 GTGTCATGAGTTGTATCCCTCG 58.551 50.000 0.00 0.00 0.00 4.63
273 274 2.159099 TGTCATGAGTTGTATCCCTCGC 60.159 50.000 0.00 0.00 0.00 5.03
274 275 2.101582 GTCATGAGTTGTATCCCTCGCT 59.898 50.000 0.00 0.00 0.00 4.93
275 276 2.101415 TCATGAGTTGTATCCCTCGCTG 59.899 50.000 0.00 0.00 0.00 5.18
276 277 1.557099 TGAGTTGTATCCCTCGCTGT 58.443 50.000 0.00 0.00 0.00 4.40
277 278 2.730382 TGAGTTGTATCCCTCGCTGTA 58.270 47.619 0.00 0.00 0.00 2.74
278 279 2.426024 TGAGTTGTATCCCTCGCTGTAC 59.574 50.000 0.00 0.00 0.00 2.90
279 280 2.688958 GAGTTGTATCCCTCGCTGTACT 59.311 50.000 0.00 0.00 0.00 2.73
280 281 3.097614 AGTTGTATCCCTCGCTGTACTT 58.902 45.455 0.00 0.00 0.00 2.24
281 282 4.275810 AGTTGTATCCCTCGCTGTACTTA 58.724 43.478 0.00 0.00 0.00 2.24
282 283 4.894114 AGTTGTATCCCTCGCTGTACTTAT 59.106 41.667 0.00 0.00 0.00 1.73
283 284 5.363005 AGTTGTATCCCTCGCTGTACTTATT 59.637 40.000 0.00 0.00 0.00 1.40
284 285 5.449107 TGTATCCCTCGCTGTACTTATTC 57.551 43.478 0.00 0.00 0.00 1.75
285 286 5.138276 TGTATCCCTCGCTGTACTTATTCT 58.862 41.667 0.00 0.00 0.00 2.40
286 287 5.597182 TGTATCCCTCGCTGTACTTATTCTT 59.403 40.000 0.00 0.00 0.00 2.52
287 288 5.615925 ATCCCTCGCTGTACTTATTCTTT 57.384 39.130 0.00 0.00 0.00 2.52
288 289 5.416271 TCCCTCGCTGTACTTATTCTTTT 57.584 39.130 0.00 0.00 0.00 2.27
289 290 5.416947 TCCCTCGCTGTACTTATTCTTTTC 58.583 41.667 0.00 0.00 0.00 2.29
290 291 4.571176 CCCTCGCTGTACTTATTCTTTTCC 59.429 45.833 0.00 0.00 0.00 3.13
291 292 5.420409 CCTCGCTGTACTTATTCTTTTCCT 58.580 41.667 0.00 0.00 0.00 3.36
292 293 5.875359 CCTCGCTGTACTTATTCTTTTCCTT 59.125 40.000 0.00 0.00 0.00 3.36
293 294 6.036191 CCTCGCTGTACTTATTCTTTTCCTTC 59.964 42.308 0.00 0.00 0.00 3.46
294 295 6.698380 TCGCTGTACTTATTCTTTTCCTTCT 58.302 36.000 0.00 0.00 0.00 2.85
295 296 7.833786 TCGCTGTACTTATTCTTTTCCTTCTA 58.166 34.615 0.00 0.00 0.00 2.10
296 297 8.475639 TCGCTGTACTTATTCTTTTCCTTCTAT 58.524 33.333 0.00 0.00 0.00 1.98
297 298 8.756864 CGCTGTACTTATTCTTTTCCTTCTATC 58.243 37.037 0.00 0.00 0.00 2.08
298 299 9.601217 GCTGTACTTATTCTTTTCCTTCTATCA 57.399 33.333 0.00 0.00 0.00 2.15
312 313 7.658179 TCCTTCTATCAATGAAATGATACGC 57.342 36.000 0.00 0.00 40.44 4.42
313 314 7.216494 TCCTTCTATCAATGAAATGATACGCA 58.784 34.615 0.00 0.00 40.44 5.24
314 315 7.714813 TCCTTCTATCAATGAAATGATACGCAA 59.285 33.333 0.00 0.00 40.44 4.85
315 316 8.013947 CCTTCTATCAATGAAATGATACGCAAG 58.986 37.037 0.00 0.00 40.44 4.01
427 430 1.435577 GTGTCACGGGTATGGACAAC 58.564 55.000 0.00 0.00 42.59 3.32
459 463 4.481368 ACATGCATGGCAAATTCTCAAT 57.519 36.364 29.41 1.63 43.62 2.57
460 464 5.601583 ACATGCATGGCAAATTCTCAATA 57.398 34.783 29.41 0.00 43.62 1.90
461 465 5.597806 ACATGCATGGCAAATTCTCAATAG 58.402 37.500 29.41 0.00 43.62 1.73
493 501 1.117150 ATGCCAGGATTTGACATGCC 58.883 50.000 0.00 0.00 27.78 4.40
495 503 1.188863 GCCAGGATTTGACATGCCTT 58.811 50.000 0.00 0.00 0.00 4.35
533 541 2.924926 TGCTCGCGACACGTAATTTATT 59.075 40.909 3.71 0.00 44.19 1.40
539 547 7.470358 GCTCGCGACACGTAATTTATTATAAAG 59.530 37.037 3.71 0.00 44.19 1.85
542 550 9.622366 CGCGACACGTAATTTATTATAAAGAAA 57.378 29.630 0.00 0.00 36.87 2.52
592 600 0.956633 ATCATATTTGCAGCGGGCTG 59.043 50.000 16.09 16.09 45.15 4.85
604 612 1.094785 GCGGGCTGCTTTTCTGAATA 58.905 50.000 11.99 0.00 41.73 1.75
652 661 2.166459 CGAATAGTTCTGACCAGCTGGA 59.834 50.000 39.19 17.21 38.94 3.86
656 670 1.202698 AGTTCTGACCAGCTGGAACAC 60.203 52.381 39.19 24.17 40.05 3.32
899 920 8.922931 TGATGATGCATATATGGTTTGTAAGT 57.077 30.769 14.51 0.00 0.00 2.24
900 921 9.353431 TGATGATGCATATATGGTTTGTAAGTT 57.647 29.630 14.51 0.00 0.00 2.66
903 924 9.845740 TGATGCATATATGGTTTGTAAGTTAGT 57.154 29.630 14.51 0.00 0.00 2.24
932 953 9.893305 AAAGTTGAGTCATCTATTTTAAAACGG 57.107 29.630 1.97 0.00 0.00 4.44
933 954 8.842358 AGTTGAGTCATCTATTTTAAAACGGA 57.158 30.769 1.97 5.09 0.00 4.69
934 955 8.936864 AGTTGAGTCATCTATTTTAAAACGGAG 58.063 33.333 1.97 1.74 0.00 4.63
935 956 7.843490 TGAGTCATCTATTTTAAAACGGAGG 57.157 36.000 1.97 6.55 0.00 4.30
936 957 6.821665 TGAGTCATCTATTTTAAAACGGAGGG 59.178 38.462 1.97 2.46 0.00 4.30
937 958 6.954232 AGTCATCTATTTTAAAACGGAGGGA 58.046 36.000 1.97 4.48 0.00 4.20
938 959 7.048512 AGTCATCTATTTTAAAACGGAGGGAG 58.951 38.462 1.97 0.00 0.00 4.30
1053 1074 1.216710 CTTCCTCGCCGCTCTCTTT 59.783 57.895 0.00 0.00 0.00 2.52
1054 1075 0.804156 CTTCCTCGCCGCTCTCTTTC 60.804 60.000 0.00 0.00 0.00 2.62
1067 1088 4.445545 CTTTCTTGCGTCGGCGGC 62.446 66.667 13.05 3.25 44.10 6.53
1090 1111 2.748647 TGATCGACGGAGCCGACA 60.749 61.111 16.83 4.94 42.83 4.35
1101 1122 3.394836 GCCGACAGGGAAGAGCCT 61.395 66.667 0.00 0.00 38.47 4.58
1245 1266 4.052229 CTGGACCTCGCCGTCGTT 62.052 66.667 0.00 0.00 36.96 3.85
1266 1287 2.722201 CCTCCCTTCGTCCTTCCCG 61.722 68.421 0.00 0.00 0.00 5.14
1273 1294 3.382832 CGTCCTTCCCGCTCTGGT 61.383 66.667 0.00 0.00 35.15 4.00
1331 1352 0.170561 GCTACGCTCTCCTTCGACAA 59.829 55.000 0.00 0.00 0.00 3.18
1339 1360 2.154798 CTCCTTCGACAACCGCCTGA 62.155 60.000 0.00 0.00 38.37 3.86
1347 1368 1.194781 ACAACCGCCTGATCCTCACT 61.195 55.000 0.00 0.00 0.00 3.41
1355 1376 0.684479 CTGATCCTCACTGTCCCCGA 60.684 60.000 0.00 0.00 0.00 5.14
1446 1467 2.125106 ATCCGGCTCTTCAACGGC 60.125 61.111 0.00 0.00 46.78 5.68
1518 1539 0.798776 GCCAGAACTTCACCATGTCG 59.201 55.000 0.00 0.00 0.00 4.35
1671 1692 4.090057 GAGAACGCAACGCAGCCC 62.090 66.667 0.00 0.00 0.00 5.19
1881 1902 1.006832 CCGACTACAAGGCCATTTCG 58.993 55.000 5.01 3.80 0.00 3.46
1932 1953 3.583276 TTACAGCCTGTGCGTCCCG 62.583 63.158 7.83 0.00 44.33 5.14
2017 2038 1.823976 GAGGAATCCACCGACCTCC 59.176 63.158 0.61 0.00 41.89 4.30
2073 2094 2.424302 CGGAACCGGGTGTCACTT 59.576 61.111 6.32 0.00 35.56 3.16
2386 2407 3.266964 CGTACGTCGGGTGGAAGA 58.733 61.111 7.22 0.00 35.71 2.87
2400 2421 4.711949 AAGAGGTGGCTGCGGCAG 62.712 66.667 25.21 25.21 39.19 4.85
2478 2499 1.379044 CAAGTCCATGGACAGCCCC 60.379 63.158 39.38 17.51 46.76 5.80
2507 2528 0.669318 TTCAAGACGTGATCGGTGCC 60.669 55.000 0.00 0.00 41.85 5.01
2592 2643 3.267812 TGGAGAAAGAGGATTGATGGCTT 59.732 43.478 0.00 0.00 0.00 4.35
2695 2748 3.150767 TCCATTGTGTAGGGTTTTTCGG 58.849 45.455 0.00 0.00 0.00 4.30
2723 2776 6.825213 CCATTCTTTTCACCATCTCTGTATCA 59.175 38.462 0.00 0.00 0.00 2.15
2749 2809 6.538381 TGAACATGTATGCTCAATCGTGTATT 59.462 34.615 0.00 0.00 30.66 1.89
2750 2810 6.925610 ACATGTATGCTCAATCGTGTATTT 57.074 33.333 0.00 0.00 0.00 1.40
2751 2811 6.948353 ACATGTATGCTCAATCGTGTATTTC 58.052 36.000 0.00 0.00 0.00 2.17
2752 2812 6.538381 ACATGTATGCTCAATCGTGTATTTCA 59.462 34.615 0.00 0.00 0.00 2.69
2753 2813 6.976636 TGTATGCTCAATCGTGTATTTCAA 57.023 33.333 0.00 0.00 0.00 2.69
2754 2814 7.371126 TGTATGCTCAATCGTGTATTTCAAA 57.629 32.000 0.00 0.00 0.00 2.69
2755 2815 7.463544 TGTATGCTCAATCGTGTATTTCAAAG 58.536 34.615 0.00 0.00 0.00 2.77
2756 2816 6.741992 ATGCTCAATCGTGTATTTCAAAGA 57.258 33.333 0.00 0.00 0.00 2.52
2757 2817 6.741992 TGCTCAATCGTGTATTTCAAAGAT 57.258 33.333 0.00 0.00 0.00 2.40
2758 2818 7.841915 TGCTCAATCGTGTATTTCAAAGATA 57.158 32.000 0.00 0.00 0.00 1.98
2759 2819 8.437360 TGCTCAATCGTGTATTTCAAAGATAT 57.563 30.769 0.00 0.00 0.00 1.63
2760 2820 8.337532 TGCTCAATCGTGTATTTCAAAGATATG 58.662 33.333 0.00 0.00 0.00 1.78
2761 2821 7.800380 GCTCAATCGTGTATTTCAAAGATATGG 59.200 37.037 0.00 0.00 0.00 2.74
2762 2822 7.639039 TCAATCGTGTATTTCAAAGATATGGC 58.361 34.615 0.00 0.00 0.00 4.40
2763 2823 5.651172 TCGTGTATTTCAAAGATATGGCG 57.349 39.130 0.00 0.00 0.00 5.69
2764 2824 5.113383 TCGTGTATTTCAAAGATATGGCGT 58.887 37.500 0.00 0.00 0.00 5.68
2765 2825 5.233476 TCGTGTATTTCAAAGATATGGCGTC 59.767 40.000 0.00 0.00 0.00 5.19
2766 2826 5.006261 CGTGTATTTCAAAGATATGGCGTCA 59.994 40.000 0.00 0.00 0.00 4.35
2777 2837 1.618876 ATGGCGTCAATCCGGTGGTA 61.619 55.000 0.00 0.00 0.00 3.25
2791 2851 5.013547 TCCGGTGGTAATTTCAACATCATT 58.986 37.500 0.00 0.00 0.00 2.57
2798 2858 7.331440 GTGGTAATTTCAACATCATTCATTGCA 59.669 33.333 0.00 0.00 0.00 4.08
2829 2889 8.420374 AAGAGCAAATGATAATTTTGATGCAG 57.580 30.769 0.00 0.00 36.40 4.41
2831 2891 6.053005 AGCAAATGATAATTTTGATGCAGGG 58.947 36.000 0.00 0.00 36.40 4.45
2833 2893 6.238266 GCAAATGATAATTTTGATGCAGGGTG 60.238 38.462 0.00 0.00 36.40 4.61
2946 3008 2.035449 GTCCTTAGTGGGTTTTTGGTGC 59.965 50.000 0.00 0.00 36.20 5.01
2950 3012 0.958822 AGTGGGTTTTTGGTGCGATC 59.041 50.000 0.00 0.00 0.00 3.69
2985 3047 4.523083 GGGGCTAATGAACATGTTGACTA 58.477 43.478 17.58 0.00 0.00 2.59
2986 3048 5.133221 GGGGCTAATGAACATGTTGACTAT 58.867 41.667 17.58 2.25 0.00 2.12
2987 3049 6.296026 GGGGCTAATGAACATGTTGACTATA 58.704 40.000 17.58 1.58 0.00 1.31
3028 3091 8.981724 TCATACATAAAAGATATGGCGTCTAC 57.018 34.615 0.00 0.00 0.00 2.59
3039 3102 8.868635 AGATATGGCGTCTACTTAACTTAAAC 57.131 34.615 0.00 0.00 0.00 2.01
3047 3110 8.167345 GCGTCTACTTAACTTAAACCTTCATTC 58.833 37.037 0.00 0.00 0.00 2.67
3056 3119 6.365520 ACTTAAACCTTCATTCAGGAACACT 58.634 36.000 0.00 0.00 37.39 3.55
3070 3139 3.452627 AGGAACACTGCACTATTAGGAGG 59.547 47.826 0.00 0.00 0.00 4.30
3134 3203 7.390718 ACATCTTATTTCATCGCCTTTATACCC 59.609 37.037 0.00 0.00 0.00 3.69
3136 3205 2.536761 TTCATCGCCTTTATACCCGG 57.463 50.000 0.00 0.00 0.00 5.73
3161 3230 4.351054 CCCCAAAGTGCTCCGGCT 62.351 66.667 0.00 0.00 39.59 5.52
3189 3258 7.517614 TGTAGTGCTTTGATTCATTTAACCA 57.482 32.000 0.00 0.00 0.00 3.67
3336 3405 6.183360 GGGGGTTTGATAACGACAATCTTAAG 60.183 42.308 0.00 0.00 35.00 1.85
3390 3459 5.848286 TCTATCACTAATCATGGGGCATT 57.152 39.130 0.00 0.00 0.00 3.56
3420 3489 1.600957 CAGCACAAGACACAACAGAGG 59.399 52.381 0.00 0.00 0.00 3.69
3427 3496 5.050091 CACAAGACACAACAGAGGAATACAC 60.050 44.000 0.00 0.00 0.00 2.90
3444 3513 6.183361 GGAATACACAGGTGATACTCCAATCT 60.183 42.308 6.40 0.00 0.00 2.40
3457 3526 3.274288 CTCCAATCTTTAGGGACACTGC 58.726 50.000 0.00 0.00 0.00 4.40
3474 3543 2.706190 ACTGCTGGACACTTCCTAGTTT 59.294 45.455 0.00 0.00 43.31 2.66
3481 3550 2.475487 GACACTTCCTAGTTTGCGACAC 59.525 50.000 0.00 0.00 30.26 3.67
3483 3552 1.270678 ACTTCCTAGTTTGCGACACCC 60.271 52.381 0.00 0.00 0.00 4.61
3487 3556 2.568062 TCCTAGTTTGCGACACCCAATA 59.432 45.455 0.00 0.00 0.00 1.90
3490 3559 1.202830 AGTTTGCGACACCCAATACCA 60.203 47.619 0.00 0.00 0.00 3.25
3491 3560 1.068816 GTTTGCGACACCCAATACCAC 60.069 52.381 0.00 0.00 0.00 4.16
3492 3561 0.108774 TTGCGACACCCAATACCACA 59.891 50.000 0.00 0.00 0.00 4.17
3493 3562 0.326595 TGCGACACCCAATACCACAT 59.673 50.000 0.00 0.00 0.00 3.21
3494 3563 1.014352 GCGACACCCAATACCACATC 58.986 55.000 0.00 0.00 0.00 3.06
3495 3564 1.677518 GCGACACCCAATACCACATCA 60.678 52.381 0.00 0.00 0.00 3.07
3496 3565 2.917933 CGACACCCAATACCACATCAT 58.082 47.619 0.00 0.00 0.00 2.45
3497 3566 3.742954 GCGACACCCAATACCACATCATA 60.743 47.826 0.00 0.00 0.00 2.15
3498 3567 4.641396 CGACACCCAATACCACATCATAT 58.359 43.478 0.00 0.00 0.00 1.78
3499 3568 4.452114 CGACACCCAATACCACATCATATG 59.548 45.833 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.159108 AGGAGCCGGACCCTAGGG 62.159 72.222 27.36 27.36 42.03 3.53
5 6 2.522193 GAGGAGCCGGACCCTAGG 60.522 72.222 5.05 0.06 31.84 3.02
6 7 2.522193 GGAGGAGCCGGACCCTAG 60.522 72.222 5.05 0.00 31.84 3.02
7 8 3.028098 AGGAGGAGCCGGACCCTA 61.028 66.667 5.05 0.00 43.43 3.53
8 9 4.787280 CAGGAGGAGCCGGACCCT 62.787 72.222 5.05 10.80 43.43 4.34
9 10 4.779733 TCAGGAGGAGCCGGACCC 62.780 72.222 5.05 4.73 43.43 4.46
10 11 2.444895 ATCAGGAGGAGCCGGACC 60.445 66.667 5.05 8.01 43.84 4.46
11 12 2.851071 CGATCAGGAGGAGCCGGAC 61.851 68.421 5.05 0.00 43.84 4.79
12 13 2.519541 CGATCAGGAGGAGCCGGA 60.520 66.667 5.05 0.00 45.14 5.14
13 14 3.610669 CCGATCAGGAGGAGCCGG 61.611 72.222 0.00 0.00 45.00 6.13
14 15 2.519541 TCCGATCAGGAGGAGCCG 60.520 66.667 2.65 0.00 45.98 5.52
40 41 4.755614 AAGACGACGCCGAGACGC 62.756 66.667 0.00 0.00 41.46 5.19
41 42 2.573689 GAAGACGACGCCGAGACG 60.574 66.667 0.00 0.00 43.26 4.18
42 43 2.197643 AAGGAAGACGACGCCGAGAC 62.198 60.000 0.00 0.00 39.50 3.36
43 44 1.919956 GAAGGAAGACGACGCCGAGA 61.920 60.000 0.00 0.00 39.50 4.04
44 45 1.514443 GAAGGAAGACGACGCCGAG 60.514 63.158 0.00 0.00 39.50 4.63
45 46 1.521450 AAGAAGGAAGACGACGCCGA 61.521 55.000 0.00 0.00 39.50 5.54
46 47 1.080705 AAGAAGGAAGACGACGCCG 60.081 57.895 0.00 0.00 42.50 6.46
47 48 0.038526 TCAAGAAGGAAGACGACGCC 60.039 55.000 0.00 0.00 0.00 5.68
48 49 1.721926 CTTCAAGAAGGAAGACGACGC 59.278 52.381 1.86 0.00 45.66 5.19
59 60 4.768583 AGCAAGATAGCTCCTTCAAGAAG 58.231 43.478 2.83 2.83 42.18 2.85
60 61 4.833478 AGCAAGATAGCTCCTTCAAGAA 57.167 40.909 0.00 0.00 42.18 2.52
71 72 2.643644 CGCGAGCGAGCAAGATAGC 61.644 63.158 12.58 0.00 42.83 2.97
72 73 2.013483 CCGCGAGCGAGCAAGATAG 61.013 63.158 19.72 0.00 42.83 2.08
73 74 2.026157 CCGCGAGCGAGCAAGATA 59.974 61.111 19.72 0.00 42.83 1.98
74 75 4.135153 ACCGCGAGCGAGCAAGAT 62.135 61.111 19.72 0.00 42.83 2.40
97 98 3.680642 ACATCATTTGAGCCGAAATCG 57.319 42.857 0.00 0.00 39.44 3.34
98 99 4.107622 CCAACATCATTTGAGCCGAAATC 58.892 43.478 0.00 0.00 0.00 2.17
99 100 3.763360 TCCAACATCATTTGAGCCGAAAT 59.237 39.130 0.00 0.00 0.00 2.17
100 101 3.153130 TCCAACATCATTTGAGCCGAAA 58.847 40.909 0.00 0.00 0.00 3.46
101 102 2.749076 CTCCAACATCATTTGAGCCGAA 59.251 45.455 0.00 0.00 0.00 4.30
102 103 2.290260 ACTCCAACATCATTTGAGCCGA 60.290 45.455 0.00 0.00 0.00 5.54
103 104 2.086869 ACTCCAACATCATTTGAGCCG 58.913 47.619 0.00 0.00 0.00 5.52
104 105 3.119352 GGAACTCCAACATCATTTGAGCC 60.119 47.826 0.00 0.00 35.64 4.70
105 106 3.760684 AGGAACTCCAACATCATTTGAGC 59.239 43.478 0.00 0.00 38.89 4.26
106 107 4.763793 ACAGGAACTCCAACATCATTTGAG 59.236 41.667 0.00 0.00 34.60 3.02
107 108 4.728772 ACAGGAACTCCAACATCATTTGA 58.271 39.130 0.00 0.00 34.60 2.69
108 109 5.009911 TCAACAGGAACTCCAACATCATTTG 59.990 40.000 0.00 0.00 34.60 2.32
109 110 5.139727 TCAACAGGAACTCCAACATCATTT 58.860 37.500 0.00 0.00 34.60 2.32
110 111 4.728772 TCAACAGGAACTCCAACATCATT 58.271 39.130 0.00 0.00 34.60 2.57
111 112 4.371624 TCAACAGGAACTCCAACATCAT 57.628 40.909 0.00 0.00 34.60 2.45
112 113 3.855255 TCAACAGGAACTCCAACATCA 57.145 42.857 0.00 0.00 34.60 3.07
113 114 4.142816 CGAATCAACAGGAACTCCAACATC 60.143 45.833 0.00 0.00 34.60 3.06
114 115 3.753272 CGAATCAACAGGAACTCCAACAT 59.247 43.478 0.00 0.00 34.60 2.71
115 116 3.138304 CGAATCAACAGGAACTCCAACA 58.862 45.455 0.00 0.00 34.60 3.33
116 117 2.484264 CCGAATCAACAGGAACTCCAAC 59.516 50.000 0.00 0.00 34.60 3.77
117 118 2.778299 CCGAATCAACAGGAACTCCAA 58.222 47.619 0.00 0.00 34.60 3.53
118 119 1.610624 GCCGAATCAACAGGAACTCCA 60.611 52.381 0.00 0.00 34.60 3.86
119 120 1.087501 GCCGAATCAACAGGAACTCC 58.912 55.000 0.00 0.00 34.60 3.85
120 121 1.808411 TGCCGAATCAACAGGAACTC 58.192 50.000 0.00 0.00 34.60 3.01
121 122 2.489329 CAATGCCGAATCAACAGGAACT 59.511 45.455 0.00 0.00 43.88 3.01
122 123 2.867429 CAATGCCGAATCAACAGGAAC 58.133 47.619 0.00 0.00 0.00 3.62
123 124 1.202114 GCAATGCCGAATCAACAGGAA 59.798 47.619 0.00 0.00 0.00 3.36
124 125 0.810648 GCAATGCCGAATCAACAGGA 59.189 50.000 0.00 0.00 0.00 3.86
125 126 0.179129 GGCAATGCCGAATCAACAGG 60.179 55.000 9.14 0.00 39.62 4.00
126 127 3.334078 GGCAATGCCGAATCAACAG 57.666 52.632 9.14 0.00 39.62 3.16
137 138 0.449388 CGAACCAAGAGAGGCAATGC 59.551 55.000 0.00 0.00 0.00 3.56
138 139 1.089920 CCGAACCAAGAGAGGCAATG 58.910 55.000 0.00 0.00 0.00 2.82
139 140 0.035056 CCCGAACCAAGAGAGGCAAT 60.035 55.000 0.00 0.00 0.00 3.56
140 141 1.374947 CCCGAACCAAGAGAGGCAA 59.625 57.895 0.00 0.00 0.00 4.52
141 142 3.068881 CCCGAACCAAGAGAGGCA 58.931 61.111 0.00 0.00 0.00 4.75
142 143 2.436824 GCCCGAACCAAGAGAGGC 60.437 66.667 0.00 0.00 0.00 4.70
143 144 0.674895 CAAGCCCGAACCAAGAGAGG 60.675 60.000 0.00 0.00 0.00 3.69
144 145 0.674895 CCAAGCCCGAACCAAGAGAG 60.675 60.000 0.00 0.00 0.00 3.20
145 146 1.374947 CCAAGCCCGAACCAAGAGA 59.625 57.895 0.00 0.00 0.00 3.10
146 147 0.323629 TACCAAGCCCGAACCAAGAG 59.676 55.000 0.00 0.00 0.00 2.85
147 148 0.323629 CTACCAAGCCCGAACCAAGA 59.676 55.000 0.00 0.00 0.00 3.02
148 149 0.676782 CCTACCAAGCCCGAACCAAG 60.677 60.000 0.00 0.00 0.00 3.61
149 150 1.377229 CCTACCAAGCCCGAACCAA 59.623 57.895 0.00 0.00 0.00 3.67
150 151 1.420532 AACCTACCAAGCCCGAACCA 61.421 55.000 0.00 0.00 0.00 3.67
151 152 0.251033 AAACCTACCAAGCCCGAACC 60.251 55.000 0.00 0.00 0.00 3.62
152 153 2.353323 CTAAACCTACCAAGCCCGAAC 58.647 52.381 0.00 0.00 0.00 3.95
153 154 1.339342 GCTAAACCTACCAAGCCCGAA 60.339 52.381 0.00 0.00 0.00 4.30
154 155 0.251073 GCTAAACCTACCAAGCCCGA 59.749 55.000 0.00 0.00 0.00 5.14
155 156 0.252197 AGCTAAACCTACCAAGCCCG 59.748 55.000 0.00 0.00 35.54 6.13
156 157 3.135895 TCATAGCTAAACCTACCAAGCCC 59.864 47.826 0.00 0.00 35.54 5.19
157 158 4.417426 TCATAGCTAAACCTACCAAGCC 57.583 45.455 0.00 0.00 35.54 4.35
158 159 4.214332 GCATCATAGCTAAACCTACCAAGC 59.786 45.833 0.00 0.00 35.16 4.01
159 160 5.368145 TGCATCATAGCTAAACCTACCAAG 58.632 41.667 0.00 0.00 34.99 3.61
160 161 5.366482 TGCATCATAGCTAAACCTACCAA 57.634 39.130 0.00 0.00 34.99 3.67
161 162 5.513094 GGATGCATCATAGCTAAACCTACCA 60.513 44.000 27.25 0.00 34.99 3.25
162 163 4.938226 GGATGCATCATAGCTAAACCTACC 59.062 45.833 27.25 1.59 34.99 3.18
163 164 5.799213 AGGATGCATCATAGCTAAACCTAC 58.201 41.667 27.25 5.46 34.99 3.18
164 165 6.439636 AAGGATGCATCATAGCTAAACCTA 57.560 37.500 27.25 0.00 34.99 3.08
165 166 4.989875 AGGATGCATCATAGCTAAACCT 57.010 40.909 27.25 9.57 34.99 3.50
166 167 5.300286 ACAAAGGATGCATCATAGCTAAACC 59.700 40.000 27.25 7.30 34.99 3.27
167 168 6.382869 ACAAAGGATGCATCATAGCTAAAC 57.617 37.500 27.25 7.31 34.99 2.01
168 169 6.602803 TGAACAAAGGATGCATCATAGCTAAA 59.397 34.615 27.25 5.22 34.99 1.85
169 170 6.121590 TGAACAAAGGATGCATCATAGCTAA 58.878 36.000 27.25 3.98 34.99 3.09
170 171 5.683681 TGAACAAAGGATGCATCATAGCTA 58.316 37.500 27.25 0.00 34.99 3.32
171 172 4.529897 TGAACAAAGGATGCATCATAGCT 58.470 39.130 27.25 12.72 34.99 3.32
172 173 4.261489 CCTGAACAAAGGATGCATCATAGC 60.261 45.833 27.25 10.57 40.02 2.97
173 174 4.261489 GCCTGAACAAAGGATGCATCATAG 60.261 45.833 27.25 18.40 40.02 2.23
174 175 3.633525 GCCTGAACAAAGGATGCATCATA 59.366 43.478 27.25 4.08 40.02 2.15
175 176 2.429610 GCCTGAACAAAGGATGCATCAT 59.570 45.455 27.25 18.99 40.02 2.45
176 177 1.820519 GCCTGAACAAAGGATGCATCA 59.179 47.619 27.25 5.62 40.02 3.07
177 178 2.097825 AGCCTGAACAAAGGATGCATC 58.902 47.619 18.81 18.81 40.02 3.91
178 179 1.822990 CAGCCTGAACAAAGGATGCAT 59.177 47.619 0.00 0.00 46.03 3.96
179 180 1.250328 CAGCCTGAACAAAGGATGCA 58.750 50.000 0.00 0.00 46.03 3.96
182 183 1.074405 TGCTCAGCCTGAACAAAGGAT 59.926 47.619 0.00 0.00 40.02 3.24
183 184 0.473755 TGCTCAGCCTGAACAAAGGA 59.526 50.000 0.00 0.00 40.02 3.36
184 185 1.542492 ATGCTCAGCCTGAACAAAGG 58.458 50.000 1.32 0.00 40.63 3.11
185 186 2.094854 GGAATGCTCAGCCTGAACAAAG 60.095 50.000 1.32 0.00 0.00 2.77
186 187 1.888512 GGAATGCTCAGCCTGAACAAA 59.111 47.619 1.32 0.00 0.00 2.83
187 188 1.074405 AGGAATGCTCAGCCTGAACAA 59.926 47.619 1.32 0.00 0.00 2.83
188 189 0.694771 AGGAATGCTCAGCCTGAACA 59.305 50.000 0.00 0.00 0.00 3.18
189 190 1.471684 CAAGGAATGCTCAGCCTGAAC 59.528 52.381 0.00 0.00 31.06 3.18
190 191 1.074405 ACAAGGAATGCTCAGCCTGAA 59.926 47.619 0.00 0.00 31.06 3.02
191 192 0.694771 ACAAGGAATGCTCAGCCTGA 59.305 50.000 0.00 0.00 31.06 3.86
192 193 1.093159 GACAAGGAATGCTCAGCCTG 58.907 55.000 0.00 0.00 31.06 4.85
193 194 0.990374 AGACAAGGAATGCTCAGCCT 59.010 50.000 0.00 0.00 0.00 4.58
194 195 1.065564 AGAGACAAGGAATGCTCAGCC 60.066 52.381 0.00 0.00 35.76 4.85
195 196 2.093553 AGAGAGACAAGGAATGCTCAGC 60.094 50.000 0.00 0.00 35.76 4.26
196 197 3.523547 CAGAGAGACAAGGAATGCTCAG 58.476 50.000 0.00 0.00 35.76 3.35
197 198 2.354503 GCAGAGAGACAAGGAATGCTCA 60.355 50.000 0.00 0.00 35.76 4.26
198 199 2.093553 AGCAGAGAGACAAGGAATGCTC 60.094 50.000 0.00 0.00 38.04 4.26
199 200 1.907936 AGCAGAGAGACAAGGAATGCT 59.092 47.619 0.00 0.00 37.69 3.79
200 201 2.278854 GAGCAGAGAGACAAGGAATGC 58.721 52.381 0.00 0.00 0.00 3.56
201 202 2.738000 CGGAGCAGAGAGACAAGGAATG 60.738 54.545 0.00 0.00 0.00 2.67
202 203 1.480137 CGGAGCAGAGAGACAAGGAAT 59.520 52.381 0.00 0.00 0.00 3.01
203 204 0.891373 CGGAGCAGAGAGACAAGGAA 59.109 55.000 0.00 0.00 0.00 3.36
204 205 0.967887 CCGGAGCAGAGAGACAAGGA 60.968 60.000 0.00 0.00 0.00 3.36
205 206 1.515020 CCGGAGCAGAGAGACAAGG 59.485 63.158 0.00 0.00 0.00 3.61
206 207 1.515020 CCCGGAGCAGAGAGACAAG 59.485 63.158 0.73 0.00 0.00 3.16
207 208 2.650116 GCCCGGAGCAGAGAGACAA 61.650 63.158 0.73 0.00 42.97 3.18
208 209 3.071206 GCCCGGAGCAGAGAGACA 61.071 66.667 0.73 0.00 42.97 3.41
217 218 1.377987 TAAACATGGTGCCCGGAGC 60.378 57.895 0.73 5.29 44.14 4.70
218 219 1.366111 CGTAAACATGGTGCCCGGAG 61.366 60.000 0.73 0.00 0.00 4.63
219 220 1.376166 CGTAAACATGGTGCCCGGA 60.376 57.895 0.73 0.00 0.00 5.14
220 221 3.046497 GCGTAAACATGGTGCCCGG 62.046 63.158 0.00 0.00 0.00 5.73
221 222 1.582610 AAGCGTAAACATGGTGCCCG 61.583 55.000 0.00 0.00 0.00 6.13
222 223 0.109319 CAAGCGTAAACATGGTGCCC 60.109 55.000 0.00 0.00 0.00 5.36
223 224 0.596082 ACAAGCGTAAACATGGTGCC 59.404 50.000 0.00 0.00 0.00 5.01
224 225 1.001815 ACACAAGCGTAAACATGGTGC 60.002 47.619 0.00 0.00 0.00 5.01
225 226 2.649516 CACACAAGCGTAAACATGGTG 58.350 47.619 0.00 0.00 0.00 4.17
226 227 1.001815 GCACACAAGCGTAAACATGGT 60.002 47.619 0.00 0.00 0.00 3.55
227 228 1.685302 GCACACAAGCGTAAACATGG 58.315 50.000 0.00 0.00 0.00 3.66
237 238 1.367665 GACACGAACGCACACAAGC 60.368 57.895 0.00 0.00 0.00 4.01
238 239 0.581529 ATGACACGAACGCACACAAG 59.418 50.000 0.00 0.00 0.00 3.16
239 240 0.303191 CATGACACGAACGCACACAA 59.697 50.000 0.00 0.00 0.00 3.33
240 241 0.528684 TCATGACACGAACGCACACA 60.529 50.000 0.00 0.00 0.00 3.72
241 242 0.161658 CTCATGACACGAACGCACAC 59.838 55.000 0.00 0.00 0.00 3.82
242 243 0.249280 ACTCATGACACGAACGCACA 60.249 50.000 0.00 0.00 0.00 4.57
243 244 0.859232 AACTCATGACACGAACGCAC 59.141 50.000 0.00 0.00 0.00 5.34
244 245 0.858583 CAACTCATGACACGAACGCA 59.141 50.000 0.00 0.00 0.00 5.24
245 246 0.859232 ACAACTCATGACACGAACGC 59.141 50.000 0.00 0.00 0.00 4.84
246 247 3.303495 GGATACAACTCATGACACGAACG 59.697 47.826 0.00 0.00 0.00 3.95
247 248 3.617263 GGGATACAACTCATGACACGAAC 59.383 47.826 0.00 0.00 39.74 3.95
248 249 3.513912 AGGGATACAACTCATGACACGAA 59.486 43.478 0.00 0.00 39.74 3.85
249 250 3.096852 AGGGATACAACTCATGACACGA 58.903 45.455 0.00 0.00 39.74 4.35
250 251 3.448686 GAGGGATACAACTCATGACACG 58.551 50.000 0.00 0.00 39.74 4.49
251 252 3.448686 CGAGGGATACAACTCATGACAC 58.551 50.000 0.00 0.00 39.74 3.67
252 253 2.159099 GCGAGGGATACAACTCATGACA 60.159 50.000 0.00 0.00 39.74 3.58
253 254 2.101582 AGCGAGGGATACAACTCATGAC 59.898 50.000 0.00 0.00 39.74 3.06
254 255 2.101415 CAGCGAGGGATACAACTCATGA 59.899 50.000 0.00 0.00 39.74 3.07
255 256 2.159043 ACAGCGAGGGATACAACTCATG 60.159 50.000 0.00 0.00 39.74 3.07
256 257 2.111384 ACAGCGAGGGATACAACTCAT 58.889 47.619 0.00 0.00 39.74 2.90
257 258 1.557099 ACAGCGAGGGATACAACTCA 58.443 50.000 0.00 0.00 39.74 3.41
258 259 2.688958 AGTACAGCGAGGGATACAACTC 59.311 50.000 0.00 0.00 39.74 3.01
259 260 2.736347 AGTACAGCGAGGGATACAACT 58.264 47.619 0.00 0.00 39.74 3.16
260 261 3.521947 AAGTACAGCGAGGGATACAAC 57.478 47.619 0.00 0.00 39.74 3.32
261 262 5.597182 AGAATAAGTACAGCGAGGGATACAA 59.403 40.000 0.00 0.00 39.74 2.41
262 263 5.138276 AGAATAAGTACAGCGAGGGATACA 58.862 41.667 0.00 0.00 39.74 2.29
263 264 5.708877 AGAATAAGTACAGCGAGGGATAC 57.291 43.478 0.00 0.00 0.00 2.24
264 265 6.726490 AAAGAATAAGTACAGCGAGGGATA 57.274 37.500 0.00 0.00 0.00 2.59
265 266 5.615925 AAAGAATAAGTACAGCGAGGGAT 57.384 39.130 0.00 0.00 0.00 3.85
266 267 5.416271 AAAAGAATAAGTACAGCGAGGGA 57.584 39.130 0.00 0.00 0.00 4.20
267 268 4.571176 GGAAAAGAATAAGTACAGCGAGGG 59.429 45.833 0.00 0.00 0.00 4.30
268 269 5.420409 AGGAAAAGAATAAGTACAGCGAGG 58.580 41.667 0.00 0.00 0.00 4.63
269 270 6.814146 AGAAGGAAAAGAATAAGTACAGCGAG 59.186 38.462 0.00 0.00 0.00 5.03
270 271 6.698380 AGAAGGAAAAGAATAAGTACAGCGA 58.302 36.000 0.00 0.00 0.00 4.93
271 272 6.969828 AGAAGGAAAAGAATAAGTACAGCG 57.030 37.500 0.00 0.00 0.00 5.18
272 273 9.601217 TGATAGAAGGAAAAGAATAAGTACAGC 57.399 33.333 0.00 0.00 0.00 4.40
286 287 8.559536 GCGTATCATTTCATTGATAGAAGGAAA 58.440 33.333 0.00 0.00 38.83 3.13
287 288 7.714813 TGCGTATCATTTCATTGATAGAAGGAA 59.285 33.333 0.00 0.00 38.83 3.36
288 289 7.216494 TGCGTATCATTTCATTGATAGAAGGA 58.784 34.615 0.00 0.00 38.83 3.36
289 290 7.425577 TGCGTATCATTTCATTGATAGAAGG 57.574 36.000 0.00 0.00 38.83 3.46
290 291 8.554528 ACTTGCGTATCATTTCATTGATAGAAG 58.445 33.333 0.00 0.00 38.83 2.85
291 292 8.437360 ACTTGCGTATCATTTCATTGATAGAA 57.563 30.769 0.00 0.00 38.83 2.10
292 293 8.437360 AACTTGCGTATCATTTCATTGATAGA 57.563 30.769 0.00 0.00 38.83 1.98
293 294 9.507280 AAAACTTGCGTATCATTTCATTGATAG 57.493 29.630 0.00 0.00 38.83 2.08
295 296 9.289303 GTAAAACTTGCGTATCATTTCATTGAT 57.711 29.630 0.00 0.00 39.60 2.57
296 297 7.480229 CGTAAAACTTGCGTATCATTTCATTGA 59.520 33.333 0.00 0.00 33.98 2.57
297 298 7.591407 CGTAAAACTTGCGTATCATTTCATTG 58.409 34.615 0.00 0.00 33.98 2.82
298 299 7.719689 CGTAAAACTTGCGTATCATTTCATT 57.280 32.000 0.00 0.00 33.98 2.57
408 411 1.001633 AGTTGTCCATACCCGTGACAC 59.998 52.381 0.00 0.00 38.64 3.67
437 441 5.601583 ATTGAGAATTTGCCATGCATGTA 57.398 34.783 24.58 11.07 38.76 2.29
441 445 5.918426 TTCTATTGAGAATTTGCCATGCA 57.082 34.783 0.00 0.00 36.75 3.96
493 501 3.695060 AGCATGGCAATTCTCTTCAGAAG 59.305 43.478 3.45 3.45 42.13 2.85
495 503 3.276857 GAGCATGGCAATTCTCTTCAGA 58.723 45.455 0.00 0.00 0.00 3.27
547 555 9.770097 TGTTAGATTTTTAAACATGGCAAATCA 57.230 25.926 14.49 0.00 36.64 2.57
570 578 1.067516 GCCCGCTGCAAATATGATGTT 59.932 47.619 0.00 0.00 40.77 2.71
629 637 3.368427 CCAGCTGGTCAGAACTATTCGAA 60.368 47.826 25.53 0.00 34.02 3.71
656 670 9.421806 CAGCTCATCTAAGGAAATATAACTCTG 57.578 37.037 0.00 0.00 0.00 3.35
670 684 4.402155 ACTCTCTGTTCCAGCTCATCTAAG 59.598 45.833 0.00 0.00 0.00 2.18
814 835 2.240493 AGTCTGTTTCCAACTCACGG 57.760 50.000 0.00 0.00 0.00 4.94
906 927 9.893305 CCGTTTTAAAATAGATGACTCAACTTT 57.107 29.630 3.52 0.00 0.00 2.66
907 928 9.280174 TCCGTTTTAAAATAGATGACTCAACTT 57.720 29.630 3.52 0.00 0.00 2.66
908 929 8.842358 TCCGTTTTAAAATAGATGACTCAACT 57.158 30.769 3.52 0.00 0.00 3.16
909 930 8.175716 CCTCCGTTTTAAAATAGATGACTCAAC 58.824 37.037 3.52 0.00 0.00 3.18
910 931 7.335924 CCCTCCGTTTTAAAATAGATGACTCAA 59.664 37.037 3.52 0.00 0.00 3.02
911 932 6.821665 CCCTCCGTTTTAAAATAGATGACTCA 59.178 38.462 3.52 0.00 0.00 3.41
912 933 7.046033 TCCCTCCGTTTTAAAATAGATGACTC 58.954 38.462 3.52 0.00 0.00 3.36
913 934 6.954232 TCCCTCCGTTTTAAAATAGATGACT 58.046 36.000 3.52 0.00 0.00 3.41
914 935 6.822170 ACTCCCTCCGTTTTAAAATAGATGAC 59.178 38.462 3.52 0.00 0.00 3.06
915 936 6.954232 ACTCCCTCCGTTTTAAAATAGATGA 58.046 36.000 3.52 3.96 0.00 2.92
916 937 7.767198 TGTACTCCCTCCGTTTTAAAATAGATG 59.233 37.037 3.52 2.01 0.00 2.90
917 938 7.854337 TGTACTCCCTCCGTTTTAAAATAGAT 58.146 34.615 3.52 0.00 0.00 1.98
918 939 7.243604 TGTACTCCCTCCGTTTTAAAATAGA 57.756 36.000 3.52 3.61 0.00 1.98
919 940 7.466860 GCATGTACTCCCTCCGTTTTAAAATAG 60.467 40.741 3.52 1.99 0.00 1.73
920 941 6.316890 GCATGTACTCCCTCCGTTTTAAAATA 59.683 38.462 3.52 0.00 0.00 1.40
921 942 5.124936 GCATGTACTCCCTCCGTTTTAAAAT 59.875 40.000 3.52 0.00 0.00 1.82
922 943 4.456566 GCATGTACTCCCTCCGTTTTAAAA 59.543 41.667 0.00 0.00 0.00 1.52
923 944 4.004982 GCATGTACTCCCTCCGTTTTAAA 58.995 43.478 0.00 0.00 0.00 1.52
924 945 3.262405 AGCATGTACTCCCTCCGTTTTAA 59.738 43.478 0.00 0.00 0.00 1.52
925 946 2.835764 AGCATGTACTCCCTCCGTTTTA 59.164 45.455 0.00 0.00 0.00 1.52
926 947 1.628846 AGCATGTACTCCCTCCGTTTT 59.371 47.619 0.00 0.00 0.00 2.43
927 948 1.276622 AGCATGTACTCCCTCCGTTT 58.723 50.000 0.00 0.00 0.00 3.60
928 949 1.755380 GTAGCATGTACTCCCTCCGTT 59.245 52.381 0.00 0.00 0.00 4.44
929 950 1.063867 AGTAGCATGTACTCCCTCCGT 60.064 52.381 0.00 0.00 0.00 4.69
930 951 1.609555 GAGTAGCATGTACTCCCTCCG 59.390 57.143 17.67 0.00 38.33 4.63
931 952 2.625790 CAGAGTAGCATGTACTCCCTCC 59.374 54.545 21.67 7.13 43.61 4.30
932 953 3.292460 ACAGAGTAGCATGTACTCCCTC 58.708 50.000 21.67 9.99 43.61 4.30
933 954 3.053245 AGACAGAGTAGCATGTACTCCCT 60.053 47.826 21.67 16.41 43.61 4.20
934 955 3.292460 AGACAGAGTAGCATGTACTCCC 58.708 50.000 21.67 15.17 43.61 4.30
935 956 3.948473 TGAGACAGAGTAGCATGTACTCC 59.052 47.826 21.67 12.74 43.61 3.85
936 957 5.568685 TTGAGACAGAGTAGCATGTACTC 57.431 43.478 19.47 19.47 43.08 2.59
937 958 4.142271 GCTTGAGACAGAGTAGCATGTACT 60.142 45.833 7.43 7.43 0.00 2.73
938 959 4.109050 GCTTGAGACAGAGTAGCATGTAC 58.891 47.826 0.00 0.00 0.00 2.90
1047 1068 1.733041 CGCCGACGCAAGAAAGAGA 60.733 57.895 0.00 0.00 43.62 3.10
1067 1088 4.271816 CTCCGTCGATCAGGGGCG 62.272 72.222 0.00 0.00 0.00 6.13
1090 1111 2.948720 GCGTCACAGGCTCTTCCCT 61.949 63.158 0.00 0.00 34.93 4.20
1101 1122 1.887242 GTTGGACAGCTGCGTCACA 60.887 57.895 15.27 14.62 37.66 3.58
1177 1198 2.202349 GAAGATGCCGTTGTGCGC 60.202 61.111 0.00 0.00 39.71 6.09
1245 1266 0.903454 GGAAGGACGAAGGGAGGTGA 60.903 60.000 0.00 0.00 0.00 4.02
1339 1360 4.364318 CTCGGGGACAGTGAGGAT 57.636 61.111 0.00 0.00 0.00 3.24
1355 1376 4.742649 TCCAGAGCTCGCCGACCT 62.743 66.667 8.37 0.00 0.00 3.85
1932 1953 4.785453 CACTTGGGCGCTCCTCCC 62.785 72.222 3.94 0.00 44.17 4.30
2073 2094 1.374631 CAGCTGCTCCTTGTACGCA 60.375 57.895 0.00 0.00 0.00 5.24
2478 2499 4.811555 TCACGTCTTGAAGGAATTGTTG 57.188 40.909 0.00 0.00 0.00 3.33
2507 2528 3.411446 TGGGTTCAGCTTCAATACAGTG 58.589 45.455 0.00 0.00 0.00 3.66
2544 2565 2.749044 AGCTCAGCAACCCGCATG 60.749 61.111 0.00 0.00 46.13 4.06
2545 2566 2.749044 CAGCTCAGCAACCCGCAT 60.749 61.111 0.00 0.00 46.13 4.73
2548 2569 3.429141 CTGCAGCTCAGCAACCCG 61.429 66.667 0.00 0.00 45.13 5.28
2549 2570 2.033141 TCTGCAGCTCAGCAACCC 59.967 61.111 9.47 0.00 45.13 4.11
2551 2572 0.950116 AAACTCTGCAGCTCAGCAAC 59.050 50.000 9.47 0.00 45.13 4.17
2568 2619 4.019174 GCCATCAATCCTCTTTCTCCAAA 58.981 43.478 0.00 0.00 0.00 3.28
2592 2643 1.993948 ATGGAGCAGAGCTGGCTGA 60.994 57.895 13.82 1.66 42.78 4.26
2695 2748 4.397417 CAGAGATGGTGAAAAGAATGGGAC 59.603 45.833 0.00 0.00 0.00 4.46
2723 2776 4.877823 ACACGATTGAGCATACATGTTCAT 59.122 37.500 2.30 0.00 45.29 2.57
2749 2809 3.559655 CGGATTGACGCCATATCTTTGAA 59.440 43.478 0.00 0.00 0.00 2.69
2750 2810 3.130633 CGGATTGACGCCATATCTTTGA 58.869 45.455 0.00 0.00 0.00 2.69
2751 2811 2.224079 CCGGATTGACGCCATATCTTTG 59.776 50.000 0.00 0.00 0.00 2.77
2752 2812 2.158813 ACCGGATTGACGCCATATCTTT 60.159 45.455 9.46 0.00 0.00 2.52
2753 2813 1.416401 ACCGGATTGACGCCATATCTT 59.584 47.619 9.46 0.00 0.00 2.40
2754 2814 1.048601 ACCGGATTGACGCCATATCT 58.951 50.000 9.46 0.00 0.00 1.98
2755 2815 1.148310 CACCGGATTGACGCCATATC 58.852 55.000 9.46 0.00 0.00 1.63
2756 2816 0.250295 CCACCGGATTGACGCCATAT 60.250 55.000 9.46 0.00 0.00 1.78
2757 2817 1.145156 CCACCGGATTGACGCCATA 59.855 57.895 9.46 0.00 0.00 2.74
2758 2818 1.618876 TACCACCGGATTGACGCCAT 61.619 55.000 9.46 0.00 0.00 4.40
2759 2819 1.828461 TTACCACCGGATTGACGCCA 61.828 55.000 9.46 0.00 0.00 5.69
2760 2820 0.463116 ATTACCACCGGATTGACGCC 60.463 55.000 9.46 0.00 0.00 5.68
2761 2821 1.375551 AATTACCACCGGATTGACGC 58.624 50.000 9.46 0.00 0.00 5.19
2762 2822 3.004171 TGAAATTACCACCGGATTGACG 58.996 45.455 9.46 0.00 0.00 4.35
2763 2823 4.216687 TGTTGAAATTACCACCGGATTGAC 59.783 41.667 9.46 0.00 0.00 3.18
2764 2824 4.399219 TGTTGAAATTACCACCGGATTGA 58.601 39.130 9.46 0.00 0.00 2.57
2765 2825 4.775058 TGTTGAAATTACCACCGGATTG 57.225 40.909 9.46 0.00 0.00 2.67
2766 2826 5.013547 TGATGTTGAAATTACCACCGGATT 58.986 37.500 9.46 0.00 0.00 3.01
2777 2837 8.610248 TCTTTGCAATGAATGATGTTGAAATT 57.390 26.923 12.27 0.00 0.00 1.82
2791 2851 6.282167 TCATTTGCTCTTTTCTTTGCAATGA 58.718 32.000 10.76 10.76 43.53 2.57
2813 2873 4.402155 GGACACCCTGCATCAAAATTATCA 59.598 41.667 0.00 0.00 0.00 2.15
2865 2926 7.491696 AGAGAACGATTTCCTTAATTAGGTTCG 59.508 37.037 0.00 0.00 45.03 3.95
2912 2974 8.159229 ACCCACTAAGGACATACTAGATTTTT 57.841 34.615 0.00 0.00 41.22 1.94
2930 2992 2.156098 GATCGCACCAAAAACCCACTA 58.844 47.619 0.00 0.00 0.00 2.74
2946 3008 2.838736 CCCCCTAATCACTTGTGATCG 58.161 52.381 15.48 10.22 0.00 3.69
2950 3012 3.644966 TTAGCCCCCTAATCACTTGTG 57.355 47.619 0.00 0.00 0.00 3.33
2987 3049 9.461312 TTTATGTATGAGGCTAAAACTGTTCAT 57.539 29.630 0.00 0.00 0.00 2.57
3028 3091 8.846211 TGTTCCTGAATGAAGGTTTAAGTTAAG 58.154 33.333 0.00 0.00 38.58 1.85
3031 3094 6.833933 AGTGTTCCTGAATGAAGGTTTAAGTT 59.166 34.615 0.00 0.00 38.58 2.66
3036 3099 3.319122 GCAGTGTTCCTGAATGAAGGTTT 59.681 43.478 0.00 0.00 44.49 3.27
3039 3102 2.227388 GTGCAGTGTTCCTGAATGAAGG 59.773 50.000 0.00 0.00 44.49 3.46
3047 3110 4.437239 CTCCTAATAGTGCAGTGTTCCTG 58.563 47.826 6.82 0.10 44.53 3.86
3049 3112 3.432326 CCCTCCTAATAGTGCAGTGTTCC 60.432 52.174 6.82 0.00 0.00 3.62
3056 3119 1.211949 GCAACCCCTCCTAATAGTGCA 59.788 52.381 0.00 0.00 0.00 4.57
3057 3120 1.211949 TGCAACCCCTCCTAATAGTGC 59.788 52.381 0.00 0.00 0.00 4.40
3066 3135 0.331616 ATACCTTGTGCAACCCCTCC 59.668 55.000 0.00 0.00 34.36 4.30
3070 3139 1.271926 ACCTCATACCTTGTGCAACCC 60.272 52.381 0.00 0.00 34.36 4.11
3136 3205 1.115326 AGCACTTTGGGGCTTTGTCC 61.115 55.000 0.00 0.00 36.92 4.02
3161 3230 9.624697 GTTAAATGAATCAAAGCACTACATTGA 57.375 29.630 0.00 0.00 40.05 2.57
3318 3387 6.273825 GCCTCTCTTAAGATTGTCGTTATCA 58.726 40.000 5.44 0.00 0.00 2.15
3322 3391 3.260884 TGGCCTCTCTTAAGATTGTCGTT 59.739 43.478 5.44 0.00 0.00 3.85
3336 3405 3.574074 TTTGCTGCCCTGGCCTCTC 62.574 63.158 3.32 0.00 41.09 3.20
3390 3459 4.202212 TGTGTCTTGTGCTGCTAGTTTCTA 60.202 41.667 0.00 0.00 0.00 2.10
3420 3489 6.821388 AGATTGGAGTATCACCTGTGTATTC 58.179 40.000 0.00 0.00 36.25 1.75
3427 3496 5.366768 TCCCTAAAGATTGGAGTATCACCTG 59.633 44.000 0.00 0.00 36.25 4.00
3444 3513 1.071699 GTGTCCAGCAGTGTCCCTAAA 59.928 52.381 0.00 0.00 0.00 1.85
3474 3543 0.326595 ATGTGGTATTGGGTGTCGCA 59.673 50.000 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.