Multiple sequence alignment - TraesCS5B01G130000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G130000 chr5B 100.000 2556 0 0 1 2556 241187009 241189564 0.000000e+00 4721.0
1 TraesCS5B01G130000 chr5B 96.599 147 5 0 2244 2390 137668984 137669130 7.060000e-61 244.0
2 TraesCS5B01G130000 chr5B 90.164 122 12 0 1006 1127 241170085 241170206 2.630000e-35 159.0
3 TraesCS5B01G130000 chr4B 97.595 998 24 0 1 998 20351201 20352198 0.000000e+00 1711.0
4 TraesCS5B01G130000 chr4B 96.192 998 38 0 1 998 663891327 663892324 0.000000e+00 1633.0
5 TraesCS5B01G130000 chr4B 96.667 150 5 0 2244 2393 668651593 668651444 1.520000e-62 250.0
6 TraesCS5B01G130000 chr7B 96.393 998 36 0 1 998 70908258 70907261 0.000000e+00 1644.0
7 TraesCS5B01G130000 chr7B 96.393 998 36 0 1 998 720080665 720081662 0.000000e+00 1644.0
8 TraesCS5B01G130000 chr7A 96.008 1002 39 1 1 1001 647065 648066 0.000000e+00 1628.0
9 TraesCS5B01G130000 chr3B 96.092 998 39 0 1 998 814764753 814765750 0.000000e+00 1628.0
10 TraesCS5B01G130000 chr3B 97.351 151 4 0 2244 2394 229460470 229460620 9.070000e-65 257.0
11 TraesCS5B01G130000 chr3B 96.599 147 5 0 2244 2390 52743960 52744106 7.060000e-61 244.0
12 TraesCS5B01G130000 chr2A 96.092 998 39 0 1 998 746948186 746949183 0.000000e+00 1628.0
13 TraesCS5B01G130000 chr6B 95.992 998 40 0 1 998 708526536 708525539 0.000000e+00 1622.0
14 TraesCS5B01G130000 chr6A 95.992 998 40 0 1 998 446742476 446743473 0.000000e+00 1622.0
15 TraesCS5B01G130000 chr5D 89.739 1111 49 19 996 2065 218564684 218565770 0.000000e+00 1360.0
16 TraesCS5B01G130000 chr5D 90.865 208 19 0 1344 1551 218561614 218561821 1.940000e-71 279.0
17 TraesCS5B01G130000 chr5D 96.599 147 5 0 2244 2390 537581566 537581420 7.060000e-61 244.0
18 TraesCS5B01G130000 chr5D 95.918 147 6 0 2244 2390 296942173 296942027 3.290000e-59 239.0
19 TraesCS5B01G130000 chr5D 90.756 119 11 0 1006 1124 218561241 218561359 2.630000e-35 159.0
20 TraesCS5B01G130000 chr5D 84.211 171 16 9 2389 2555 218566023 218566186 3.400000e-34 156.0
21 TraesCS5B01G130000 chr5A 89.824 511 28 10 1668 2165 291601245 291601744 3.590000e-178 634.0
22 TraesCS5B01G130000 chr5A 89.171 434 28 5 1182 1597 291600777 291601209 8.100000e-145 523.0
23 TraesCS5B01G130000 chr5A 90.909 209 19 0 1343 1551 291597263 291597471 5.380000e-72 281.0
24 TraesCS5B01G130000 chr5A 97.872 141 3 0 996 1136 291600628 291600768 7.060000e-61 244.0
25 TraesCS5B01G130000 chr5A 95.395 152 7 0 2244 2395 44602719 44602568 2.540000e-60 243.0
26 TraesCS5B01G130000 chr5A 89.535 172 14 4 2389 2556 291601770 291601941 5.540000e-52 215.0
27 TraesCS5B01G130000 chr5A 90.164 122 12 0 1006 1127 291596888 291597009 2.630000e-35 159.0
28 TraesCS5B01G130000 chr5A 100.000 28 0 0 1646 1673 291601211 291601238 5.000000e-03 52.8
29 TraesCS5B01G130000 chr3D 94.805 154 8 0 2240 2393 232559819 232559972 9.140000e-60 241.0
30 TraesCS5B01G130000 chr2B 95.364 151 7 0 2240 2390 643206530 643206380 9.140000e-60 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G130000 chr5B 241187009 241189564 2555 False 4721.000000 4721 100.000000 1 2556 1 chr5B.!!$F3 2555
1 TraesCS5B01G130000 chr4B 20351201 20352198 997 False 1711.000000 1711 97.595000 1 998 1 chr4B.!!$F1 997
2 TraesCS5B01G130000 chr4B 663891327 663892324 997 False 1633.000000 1633 96.192000 1 998 1 chr4B.!!$F2 997
3 TraesCS5B01G130000 chr7B 70907261 70908258 997 True 1644.000000 1644 96.393000 1 998 1 chr7B.!!$R1 997
4 TraesCS5B01G130000 chr7B 720080665 720081662 997 False 1644.000000 1644 96.393000 1 998 1 chr7B.!!$F1 997
5 TraesCS5B01G130000 chr7A 647065 648066 1001 False 1628.000000 1628 96.008000 1 1001 1 chr7A.!!$F1 1000
6 TraesCS5B01G130000 chr3B 814764753 814765750 997 False 1628.000000 1628 96.092000 1 998 1 chr3B.!!$F3 997
7 TraesCS5B01G130000 chr2A 746948186 746949183 997 False 1628.000000 1628 96.092000 1 998 1 chr2A.!!$F1 997
8 TraesCS5B01G130000 chr6B 708525539 708526536 997 True 1622.000000 1622 95.992000 1 998 1 chr6B.!!$R1 997
9 TraesCS5B01G130000 chr6A 446742476 446743473 997 False 1622.000000 1622 95.992000 1 998 1 chr6A.!!$F1 997
10 TraesCS5B01G130000 chr5D 218561241 218566186 4945 False 488.500000 1360 88.892750 996 2555 4 chr5D.!!$F1 1559
11 TraesCS5B01G130000 chr5A 291596888 291601941 5053 False 301.257143 634 92.496429 996 2556 7 chr5A.!!$F1 1560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 2.524887 AAACCCGTCCGGACCTGA 60.525 61.111 28.52 0.0 37.5 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 5851 0.458543 CGCGGCATTACAGTCTCACT 60.459 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.673368 GTCGAAACTGCTCAATCCGAAT 59.327 45.455 0.00 0.00 0.00 3.34
163 164 7.309744 CCCTTGATAAAATGCCAACACTTCTTA 60.310 37.037 0.00 0.00 0.00 2.10
195 196 2.524887 AAACCCGTCCGGACCTGA 60.525 61.111 28.52 0.00 37.50 3.86
392 393 8.429641 TGGTAATGTACTCTTTGAGATTATCCC 58.570 37.037 1.25 0.00 33.32 3.85
499 500 5.499004 AAGTGTTATCCTTGCCTTCTACA 57.501 39.130 0.00 0.00 0.00 2.74
515 516 6.084277 CCTTCTACAATTTTGCGAACCTTAC 58.916 40.000 0.00 0.00 0.00 2.34
897 898 5.163824 CGGAATCGACTAATAGCGGTGTATA 60.164 44.000 0.00 0.00 39.00 1.47
1116 5217 1.392510 GACACCGTCAAATACTTCGGC 59.607 52.381 0.00 0.00 45.76 5.54
1168 5292 5.565723 GCTTGTGCTGTGAAAAGTAATTG 57.434 39.130 0.00 0.00 36.03 2.32
1245 5371 3.756434 TGCTATAAACCAGTGACCAAAGC 59.244 43.478 0.00 0.00 0.00 3.51
1247 5373 4.459337 GCTATAAACCAGTGACCAAAGCTT 59.541 41.667 0.00 0.00 0.00 3.74
1289 5415 5.700832 TCAGTAAAAGATCAAGATTGCGTGT 59.299 36.000 0.00 0.00 0.00 4.49
1291 5417 6.955963 CAGTAAAAGATCAAGATTGCGTGTAC 59.044 38.462 0.00 0.00 0.00 2.90
1369 5511 1.444119 GCAAGGACGTGCTGAACCAA 61.444 55.000 11.44 0.00 41.51 3.67
1569 5711 1.742768 CCTGATCCGCCTCCAGTAC 59.257 63.158 0.00 0.00 0.00 2.73
1571 5713 1.749334 CTGATCCGCCTCCAGTACCC 61.749 65.000 0.00 0.00 0.00 3.69
1572 5714 1.457831 GATCCGCCTCCAGTACCCT 60.458 63.158 0.00 0.00 0.00 4.34
1573 5715 1.457831 ATCCGCCTCCAGTACCCTC 60.458 63.158 0.00 0.00 0.00 4.30
1574 5716 3.528370 CCGCCTCCAGTACCCTCG 61.528 72.222 0.00 0.00 0.00 4.63
1575 5717 2.439701 CGCCTCCAGTACCCTCGA 60.440 66.667 0.00 0.00 0.00 4.04
1576 5718 2.772691 CGCCTCCAGTACCCTCGAC 61.773 68.421 0.00 0.00 0.00 4.20
1577 5719 2.424733 GCCTCCAGTACCCTCGACC 61.425 68.421 0.00 0.00 0.00 4.79
1578 5720 1.000019 CCTCCAGTACCCTCGACCA 60.000 63.158 0.00 0.00 0.00 4.02
1579 5721 0.613853 CCTCCAGTACCCTCGACCAA 60.614 60.000 0.00 0.00 0.00 3.67
1580 5722 0.531200 CTCCAGTACCCTCGACCAAC 59.469 60.000 0.00 0.00 0.00 3.77
1581 5723 0.178955 TCCAGTACCCTCGACCAACA 60.179 55.000 0.00 0.00 0.00 3.33
1582 5724 0.246635 CCAGTACCCTCGACCAACAG 59.753 60.000 0.00 0.00 0.00 3.16
1583 5725 0.389948 CAGTACCCTCGACCAACAGC 60.390 60.000 0.00 0.00 0.00 4.40
1584 5726 0.542232 AGTACCCTCGACCAACAGCT 60.542 55.000 0.00 0.00 0.00 4.24
1585 5727 1.180029 GTACCCTCGACCAACAGCTA 58.820 55.000 0.00 0.00 0.00 3.32
1586 5728 1.755380 GTACCCTCGACCAACAGCTAT 59.245 52.381 0.00 0.00 0.00 2.97
1587 5729 0.824759 ACCCTCGACCAACAGCTATC 59.175 55.000 0.00 0.00 0.00 2.08
1597 5739 3.054434 ACCAACAGCTATCACCAAGCATA 60.054 43.478 0.00 0.00 42.62 3.14
1599 5741 3.482156 ACAGCTATCACCAAGCATAGG 57.518 47.619 0.00 0.00 42.62 2.57
1618 5760 4.679373 AGGTGTGCCAACTATCTATCTG 57.321 45.455 0.00 0.00 37.19 2.90
1619 5761 3.134458 GGTGTGCCAACTATCTATCTGC 58.866 50.000 0.00 0.00 34.09 4.26
1620 5762 3.181461 GGTGTGCCAACTATCTATCTGCT 60.181 47.826 0.00 0.00 34.09 4.24
1621 5763 3.806521 GTGTGCCAACTATCTATCTGCTG 59.193 47.826 0.00 0.00 0.00 4.41
1622 5764 2.805099 GTGCCAACTATCTATCTGCTGC 59.195 50.000 0.00 0.00 0.00 5.25
1623 5765 2.435437 TGCCAACTATCTATCTGCTGCA 59.565 45.455 0.88 0.88 0.00 4.41
1624 5766 3.065655 GCCAACTATCTATCTGCTGCAG 58.934 50.000 23.31 23.31 0.00 4.41
1625 5767 3.065655 CCAACTATCTATCTGCTGCAGC 58.934 50.000 31.89 31.89 42.50 5.25
1626 5768 3.244146 CCAACTATCTATCTGCTGCAGCT 60.244 47.826 36.61 21.18 42.66 4.24
1700 5858 3.362797 CTGGTGCAGCTGCCAGTG 61.363 66.667 34.64 18.66 45.28 3.66
1723 5881 2.291508 CTGTAATGCCGCGTGTTCCG 62.292 60.000 4.92 0.00 40.40 4.30
1762 5920 6.661805 TGGTTATCCACCCTTGAATAAACTTC 59.338 38.462 0.00 0.00 46.68 3.01
1778 5936 5.580911 AAACTTCTGCGATTTTCATTTGC 57.419 34.783 0.00 0.00 0.00 3.68
1796 5954 3.011949 TGCTTTTCTTGACATTTCGGC 57.988 42.857 0.00 0.00 0.00 5.54
1922 6082 2.226674 GGCAGTTAACTTGCTGTCCTTC 59.773 50.000 21.39 7.01 35.33 3.46
1959 6119 0.682852 TCTCGCTTTTCCTTTCGGGA 59.317 50.000 0.00 0.00 43.41 5.14
1987 6147 5.070580 GCTGGGGAGCTATCTTTCTACTTAA 59.929 44.000 0.00 0.00 0.00 1.85
2052 6215 2.135933 CTGAAACTTCCTGACGGTGTC 58.864 52.381 0.00 0.00 0.00 3.67
2069 6232 3.252458 GGTGTCAATGCCTAAAAAGTCGT 59.748 43.478 0.00 0.00 0.00 4.34
2070 6233 4.464112 GTGTCAATGCCTAAAAAGTCGTC 58.536 43.478 0.00 0.00 0.00 4.20
2087 6347 1.202031 CGTCCCAGCATTTAGAAACGC 60.202 52.381 0.00 0.00 0.00 4.84
2088 6348 1.810151 GTCCCAGCATTTAGAAACGCA 59.190 47.619 0.00 0.00 0.00 5.24
2092 6352 4.095782 TCCCAGCATTTAGAAACGCATAAC 59.904 41.667 0.00 0.00 0.00 1.89
2106 6366 3.325230 GCATAACGAGTGCTGAATTCC 57.675 47.619 2.27 0.00 39.45 3.01
2112 6372 1.696832 GAGTGCTGAATTCCGACGGC 61.697 60.000 9.66 0.00 38.67 5.68
2155 6419 0.255890 ATGCCGGCCATGAGTAAACT 59.744 50.000 26.77 0.00 31.48 2.66
2168 6432 7.031372 CCATGAGTAAACTGGTGAAATGAATG 58.969 38.462 0.00 0.00 0.00 2.67
2174 6438 1.541147 CTGGTGAAATGAATGGCGTGT 59.459 47.619 0.00 0.00 0.00 4.49
2194 6458 2.034685 GTGTATGCAGCCGTCATCTAGA 59.965 50.000 0.00 0.00 0.00 2.43
2198 6462 1.135139 TGCAGCCGTCATCTAGAGTTC 59.865 52.381 0.00 0.00 0.00 3.01
2204 6468 3.067461 GCCGTCATCTAGAGTTCTCATGT 59.933 47.826 0.00 0.00 0.00 3.21
2211 6475 8.993121 GTCATCTAGAGTTCTCATGTTTTTCAA 58.007 33.333 0.00 0.00 0.00 2.69
2212 6476 8.993121 TCATCTAGAGTTCTCATGTTTTTCAAC 58.007 33.333 0.00 0.00 0.00 3.18
2213 6477 7.730364 TCTAGAGTTCTCATGTTTTTCAACC 57.270 36.000 2.64 0.00 31.02 3.77
2216 6480 4.920376 AGTTCTCATGTTTTTCAACCGTG 58.080 39.130 0.00 0.00 31.02 4.94
2217 6481 4.398044 AGTTCTCATGTTTTTCAACCGTGT 59.602 37.500 0.00 0.00 31.02 4.49
2218 6482 4.545823 TCTCATGTTTTTCAACCGTGTC 57.454 40.909 0.00 0.00 31.02 3.67
2219 6483 4.196193 TCTCATGTTTTTCAACCGTGTCT 58.804 39.130 0.00 0.00 31.02 3.41
2220 6484 4.035091 TCTCATGTTTTTCAACCGTGTCTG 59.965 41.667 0.00 0.00 31.02 3.51
2221 6485 3.692101 TCATGTTTTTCAACCGTGTCTGT 59.308 39.130 0.00 0.00 31.02 3.41
2222 6486 3.479505 TGTTTTTCAACCGTGTCTGTG 57.520 42.857 0.00 0.00 31.02 3.66
2241 6505 3.756082 TGGATTTGCCAAATACTCCCT 57.244 42.857 13.36 0.00 45.87 4.20
2242 6506 3.631250 TGGATTTGCCAAATACTCCCTC 58.369 45.455 13.36 0.00 45.87 4.30
2243 6507 3.011144 TGGATTTGCCAAATACTCCCTCA 59.989 43.478 13.36 0.00 45.87 3.86
2244 6508 4.023291 GGATTTGCCAAATACTCCCTCAA 58.977 43.478 5.08 0.00 36.34 3.02
2245 6509 4.651045 GGATTTGCCAAATACTCCCTCAAT 59.349 41.667 5.08 0.00 36.34 2.57
2246 6510 5.833131 GGATTTGCCAAATACTCCCTCAATA 59.167 40.000 5.08 0.00 36.34 1.90
2247 6511 6.323739 GGATTTGCCAAATACTCCCTCAATAA 59.676 38.462 5.08 0.00 36.34 1.40
2248 6512 7.015584 GGATTTGCCAAATACTCCCTCAATAAT 59.984 37.037 5.08 0.00 36.34 1.28
2249 6513 7.732222 TTTGCCAAATACTCCCTCAATAATT 57.268 32.000 0.00 0.00 0.00 1.40
2250 6514 6.713762 TGCCAAATACTCCCTCAATAATTG 57.286 37.500 0.00 0.00 0.00 2.32
2251 6515 6.194235 TGCCAAATACTCCCTCAATAATTGT 58.806 36.000 0.00 0.00 0.00 2.71
2252 6516 6.321181 TGCCAAATACTCCCTCAATAATTGTC 59.679 38.462 0.00 0.00 0.00 3.18
2253 6517 6.547510 GCCAAATACTCCCTCAATAATTGTCT 59.452 38.462 0.00 0.00 0.00 3.41
2254 6518 7.068716 GCCAAATACTCCCTCAATAATTGTCTT 59.931 37.037 0.00 0.00 0.00 3.01
2255 6519 8.971073 CCAAATACTCCCTCAATAATTGTCTTT 58.029 33.333 0.00 0.00 0.00 2.52
2257 6521 9.981460 AAATACTCCCTCAATAATTGTCTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
2260 6524 7.569240 ACTCCCTCAATAATTGTCTTTCTAGG 58.431 38.462 0.00 0.00 0.00 3.02
2261 6525 6.357367 TCCCTCAATAATTGTCTTTCTAGGC 58.643 40.000 0.00 0.00 0.00 3.93
2262 6526 6.069673 TCCCTCAATAATTGTCTTTCTAGGCA 60.070 38.462 0.00 0.00 33.22 4.75
2263 6527 6.774656 CCCTCAATAATTGTCTTTCTAGGCAT 59.225 38.462 0.00 0.00 35.56 4.40
2264 6528 7.286316 CCCTCAATAATTGTCTTTCTAGGCATT 59.714 37.037 0.00 0.00 35.56 3.56
2265 6529 8.689972 CCTCAATAATTGTCTTTCTAGGCATTT 58.310 33.333 0.00 0.00 35.56 2.32
2266 6530 9.727627 CTCAATAATTGTCTTTCTAGGCATTTC 57.272 33.333 0.00 0.00 35.56 2.17
2267 6531 9.241919 TCAATAATTGTCTTTCTAGGCATTTCA 57.758 29.630 0.00 0.00 35.56 2.69
2268 6532 9.859427 CAATAATTGTCTTTCTAGGCATTTCAA 57.141 29.630 0.00 0.00 35.56 2.69
2271 6535 8.767478 AATTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
2272 6536 6.899393 TGTCTTTCTAGGCATTTCAAATGT 57.101 33.333 11.80 0.00 29.10 2.71
2273 6537 7.994425 TGTCTTTCTAGGCATTTCAAATGTA 57.006 32.000 11.80 0.00 29.10 2.29
2274 6538 7.816640 TGTCTTTCTAGGCATTTCAAATGTAC 58.183 34.615 11.80 5.55 29.10 2.90
2275 6539 7.665559 TGTCTTTCTAGGCATTTCAAATGTACT 59.334 33.333 11.80 12.06 29.10 2.73
2276 6540 8.178313 GTCTTTCTAGGCATTTCAAATGTACTC 58.822 37.037 11.80 0.42 0.00 2.59
2277 6541 7.882791 TCTTTCTAGGCATTTCAAATGTACTCA 59.117 33.333 11.80 0.00 0.00 3.41
2278 6542 7.994425 TTCTAGGCATTTCAAATGTACTCAA 57.006 32.000 11.80 5.08 0.00 3.02
2279 6543 7.377766 TCTAGGCATTTCAAATGTACTCAAC 57.622 36.000 11.80 0.00 0.00 3.18
2280 6544 6.939730 TCTAGGCATTTCAAATGTACTCAACA 59.060 34.615 11.80 0.00 43.86 3.33
2330 6594 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2331 6595 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
2332 6596 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
2333 6597 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2334 6598 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2335 6599 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2336 6600 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2337 6601 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2338 6602 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2339 6603 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2340 6604 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2341 6605 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2342 6606 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2343 6607 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2344 6608 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2345 6609 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2346 6610 5.648178 TTTGCTCCGTATGTAGTCACTTA 57.352 39.130 0.00 0.00 0.00 2.24
2347 6611 5.847111 TTGCTCCGTATGTAGTCACTTAT 57.153 39.130 0.00 0.00 0.00 1.73
2348 6612 5.847111 TGCTCCGTATGTAGTCACTTATT 57.153 39.130 0.00 0.00 0.00 1.40
2349 6613 6.947644 TGCTCCGTATGTAGTCACTTATTA 57.052 37.500 0.00 0.00 0.00 0.98
2350 6614 7.337480 TGCTCCGTATGTAGTCACTTATTAA 57.663 36.000 0.00 0.00 0.00 1.40
2351 6615 7.774134 TGCTCCGTATGTAGTCACTTATTAAA 58.226 34.615 0.00 0.00 0.00 1.52
2352 6616 8.252417 TGCTCCGTATGTAGTCACTTATTAAAA 58.748 33.333 0.00 0.00 0.00 1.52
2353 6617 9.257651 GCTCCGTATGTAGTCACTTATTAAAAT 57.742 33.333 0.00 0.00 0.00 1.82
2384 6648 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2385 6649 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2386 6650 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2387 6651 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2402 6666 2.895404 GAGGGAGTATATGCAACCGGTA 59.105 50.000 8.00 0.00 0.00 4.02
2411 6675 8.413309 AGTATATGCAACCGGTAGTAAGATAA 57.587 34.615 8.00 0.00 0.00 1.75
2435 6699 8.827832 AAAGATAATGATCCTCCAACAATTGA 57.172 30.769 13.59 0.00 31.81 2.57
2436 6700 9.430399 AAAGATAATGATCCTCCAACAATTGAT 57.570 29.630 13.59 0.00 31.81 2.57
2438 6702 9.512588 AGATAATGATCCTCCAACAATTGATAC 57.487 33.333 13.59 0.00 31.81 2.24
2439 6703 9.512588 GATAATGATCCTCCAACAATTGATACT 57.487 33.333 13.59 0.00 0.00 2.12
2440 6704 7.814264 AATGATCCTCCAACAATTGATACTC 57.186 36.000 13.59 0.00 0.00 2.59
2441 6705 5.359756 TGATCCTCCAACAATTGATACTCG 58.640 41.667 13.59 0.00 0.00 4.18
2442 6706 4.137116 TCCTCCAACAATTGATACTCGG 57.863 45.455 13.59 5.39 0.00 4.63
2444 6708 3.871594 CCTCCAACAATTGATACTCGGAC 59.128 47.826 13.59 0.00 0.00 4.79
2445 6709 4.383118 CCTCCAACAATTGATACTCGGACT 60.383 45.833 13.59 0.00 0.00 3.85
2447 6711 3.871594 CCAACAATTGATACTCGGACTCC 59.128 47.826 13.59 0.00 0.00 3.85
2456 6723 2.675423 TCGGACTCCAGGTGACGG 60.675 66.667 0.00 0.00 0.00 4.79
2466 6733 1.460689 AGGTGACGGGGAGAAACCA 60.461 57.895 0.00 0.00 41.20 3.67
2471 6738 4.778143 CGGGGAGAAACCAGGGCG 62.778 72.222 0.00 0.00 41.20 6.13
2498 6765 2.549349 GGTCGTTACTTTCAGCTTCCCA 60.549 50.000 0.00 0.00 0.00 4.37
2503 6770 1.322442 ACTTTCAGCTTCCCACAAGC 58.678 50.000 0.00 0.00 43.31 4.01
2521 6788 1.160329 GCCACCCGTCAGCATCATAC 61.160 60.000 0.00 0.00 0.00 2.39
2523 6790 0.465705 CACCCGTCAGCATCATACCT 59.534 55.000 0.00 0.00 0.00 3.08
2524 6791 0.465705 ACCCGTCAGCATCATACCTG 59.534 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.410631 TGAGCAGTTTCGACCCATTTA 57.589 42.857 0.00 0.00 0.00 1.40
163 164 1.456296 GGTTTCCGGCGGAGTTTTAT 58.544 50.000 29.30 0.00 31.21 1.40
195 196 3.960102 TCAAATGGAGAACAACAAGGCTT 59.040 39.130 0.00 0.00 0.00 4.35
477 478 5.499004 TGTAGAAGGCAAGGATAACACTT 57.501 39.130 0.00 0.00 0.00 3.16
489 490 3.305064 GGTTCGCAAAATTGTAGAAGGCA 60.305 43.478 6.49 0.00 31.48 4.75
499 500 3.824414 CGAGGTAAGGTTCGCAAAATT 57.176 42.857 0.00 0.00 0.00 1.82
515 516 1.243342 TTGAAGTGGGCATTGCGAGG 61.243 55.000 1.91 0.00 0.00 4.63
1116 5217 5.478233 TGCAAAGTATTTATGCGTACCAG 57.522 39.130 0.00 0.00 42.91 4.00
1162 5263 8.184192 AGATACATTAAAGTGCACTGCAATTAC 58.816 33.333 22.49 12.12 46.02 1.89
1163 5264 8.279970 AGATACATTAAAGTGCACTGCAATTA 57.720 30.769 22.49 12.35 46.02 1.40
1168 5292 8.616076 AGATTTAGATACATTAAAGTGCACTGC 58.384 33.333 22.49 1.82 0.00 4.40
1251 5377 0.978151 TACTGACGGCTGGCCTTAAA 59.022 50.000 3.32 0.00 0.00 1.52
1253 5379 0.978151 TTTACTGACGGCTGGCCTTA 59.022 50.000 3.32 0.00 0.00 2.69
1263 5389 5.163953 ACGCAATCTTGATCTTTTACTGACG 60.164 40.000 0.00 0.00 0.00 4.35
1264 5390 6.017933 CACGCAATCTTGATCTTTTACTGAC 58.982 40.000 0.00 0.00 0.00 3.51
1265 5391 5.700832 ACACGCAATCTTGATCTTTTACTGA 59.299 36.000 0.00 0.00 0.00 3.41
1405 5547 3.567797 GCGCTGGCGAAGGTCATC 61.568 66.667 19.31 0.00 42.83 2.92
1569 5711 0.824109 TGATAGCTGTTGGTCGAGGG 59.176 55.000 0.00 0.00 0.00 4.30
1571 5713 1.204704 TGGTGATAGCTGTTGGTCGAG 59.795 52.381 0.00 0.00 0.00 4.04
1572 5714 1.262417 TGGTGATAGCTGTTGGTCGA 58.738 50.000 0.00 0.00 0.00 4.20
1573 5715 2.002586 CTTGGTGATAGCTGTTGGTCG 58.997 52.381 0.00 0.00 0.00 4.79
1574 5716 1.740025 GCTTGGTGATAGCTGTTGGTC 59.260 52.381 0.00 0.00 35.74 4.02
1575 5717 1.073763 TGCTTGGTGATAGCTGTTGGT 59.926 47.619 0.00 0.00 39.38 3.67
1576 5718 1.825090 TGCTTGGTGATAGCTGTTGG 58.175 50.000 0.00 0.00 39.38 3.77
1577 5719 3.562973 CCTATGCTTGGTGATAGCTGTTG 59.437 47.826 0.00 0.00 39.38 3.33
1578 5720 3.200825 ACCTATGCTTGGTGATAGCTGTT 59.799 43.478 0.00 0.00 39.38 3.16
1579 5721 2.774234 ACCTATGCTTGGTGATAGCTGT 59.226 45.455 0.00 0.00 39.38 4.40
1580 5722 3.482156 ACCTATGCTTGGTGATAGCTG 57.518 47.619 0.00 0.00 39.38 4.24
1597 5739 3.181461 GCAGATAGATAGTTGGCACACCT 60.181 47.826 0.00 0.00 39.29 4.00
1599 5741 3.806521 CAGCAGATAGATAGTTGGCACAC 59.193 47.826 0.00 0.00 39.29 3.82
1620 5762 2.346365 CACCAGAGCTGAGCTGCA 59.654 61.111 13.71 0.00 39.88 4.41
1621 5763 3.126225 GCACCAGAGCTGAGCTGC 61.126 66.667 13.71 5.63 39.88 5.25
1622 5764 1.742140 CTGCACCAGAGCTGAGCTG 60.742 63.158 13.71 0.00 39.88 4.24
1623 5765 2.215625 ACTGCACCAGAGCTGAGCT 61.216 57.895 6.69 6.69 43.88 4.09
1624 5766 2.033755 CACTGCACCAGAGCTGAGC 61.034 63.158 0.00 0.00 37.23 4.26
1625 5767 0.605083 TACACTGCACCAGAGCTGAG 59.395 55.000 0.00 0.00 37.23 3.35
1626 5768 0.605083 CTACACTGCACCAGAGCTGA 59.395 55.000 0.00 0.00 37.23 4.26
1638 5780 1.751924 GGCTCAGGTACTCCTACACTG 59.248 57.143 0.00 0.00 43.07 3.66
1697 5851 0.458543 CGCGGCATTACAGTCTCACT 60.459 55.000 0.00 0.00 0.00 3.41
1700 5858 0.736325 ACACGCGGCATTACAGTCTC 60.736 55.000 12.47 0.00 0.00 3.36
1762 5920 5.834239 AGAAAAGCAAATGAAAATCGCAG 57.166 34.783 0.00 0.00 0.00 5.18
1778 5936 3.923017 AGGCCGAAATGTCAAGAAAAG 57.077 42.857 0.00 0.00 0.00 2.27
1796 5954 1.990799 TCAAGCGTACGTCATGAAGG 58.009 50.000 17.90 3.62 0.00 3.46
1922 6082 2.863137 GAGAAAGATAGCACCGCTTCTG 59.137 50.000 0.00 0.00 40.44 3.02
2022 6182 3.506312 AAGTTTCAGCGCGCACGTG 62.506 57.895 35.10 23.08 42.83 4.49
2023 6183 3.223435 GAAGTTTCAGCGCGCACGT 62.223 57.895 35.10 20.57 42.83 4.49
2024 6184 2.497628 GAAGTTTCAGCGCGCACG 60.498 61.111 35.10 23.83 44.07 5.34
2025 6185 2.127232 GGAAGTTTCAGCGCGCAC 60.127 61.111 35.10 22.50 0.00 5.34
2031 6191 0.868406 CACCGTCAGGAAGTTTCAGC 59.132 55.000 0.00 0.00 41.02 4.26
2052 6215 2.817258 TGGGACGACTTTTTAGGCATTG 59.183 45.455 0.00 0.00 0.00 2.82
2087 6347 3.000322 GTCGGAATTCAGCACTCGTTATG 60.000 47.826 7.93 0.00 0.00 1.90
2088 6348 3.187700 GTCGGAATTCAGCACTCGTTAT 58.812 45.455 7.93 0.00 0.00 1.89
2092 6352 1.413767 CCGTCGGAATTCAGCACTCG 61.414 60.000 4.91 0.40 0.00 4.18
2106 6366 2.278596 CGGATACACTGGCCGTCG 60.279 66.667 0.00 0.00 40.17 5.12
2112 6372 3.861276 TGTCTAACACGGATACACTGG 57.139 47.619 0.00 0.00 0.00 4.00
2155 6419 1.269174 CACACGCCATTCATTTCACCA 59.731 47.619 0.00 0.00 0.00 4.17
2168 6432 3.864686 CGGCTGCATACACACGCC 61.865 66.667 0.50 0.91 37.40 5.68
2174 6438 2.294512 CTCTAGATGACGGCTGCATACA 59.705 50.000 0.50 0.00 0.00 2.29
2194 6458 4.398044 ACACGGTTGAAAAACATGAGAACT 59.602 37.500 0.00 0.00 27.66 3.01
2198 6462 4.201910 ACAGACACGGTTGAAAAACATGAG 60.202 41.667 0.00 0.00 27.66 2.90
2204 6468 2.712709 TCCACAGACACGGTTGAAAAA 58.287 42.857 0.00 0.00 0.00 1.94
2211 6475 0.889186 GGCAAATCCACAGACACGGT 60.889 55.000 0.00 0.00 34.01 4.83
2212 6476 0.888736 TGGCAAATCCACAGACACGG 60.889 55.000 0.00 0.00 40.72 4.94
2213 6477 0.950836 TTGGCAAATCCACAGACACG 59.049 50.000 0.00 0.00 46.55 4.49
2216 6480 4.142381 GGAGTATTTGGCAAATCCACAGAC 60.142 45.833 27.42 18.54 46.55 3.51
2217 6481 4.016444 GGAGTATTTGGCAAATCCACAGA 58.984 43.478 27.42 7.70 46.55 3.41
2218 6482 3.131046 GGGAGTATTTGGCAAATCCACAG 59.869 47.826 27.42 0.00 46.55 3.66
2219 6483 3.096092 GGGAGTATTTGGCAAATCCACA 58.904 45.455 27.42 8.83 46.55 4.17
2220 6484 3.365472 AGGGAGTATTTGGCAAATCCAC 58.635 45.455 27.42 20.54 46.55 4.02
2221 6485 3.011144 TGAGGGAGTATTTGGCAAATCCA 59.989 43.478 27.42 9.94 44.85 3.41
2222 6486 3.631250 TGAGGGAGTATTTGGCAAATCC 58.369 45.455 27.42 22.49 32.38 3.01
2234 6498 8.705594 CCTAGAAAGACAATTATTGAGGGAGTA 58.294 37.037 12.28 0.00 0.00 2.59
2235 6499 7.569240 CCTAGAAAGACAATTATTGAGGGAGT 58.431 38.462 12.28 0.00 0.00 3.85
2236 6500 6.484977 GCCTAGAAAGACAATTATTGAGGGAG 59.515 42.308 12.28 0.21 0.00 4.30
2237 6501 6.069673 TGCCTAGAAAGACAATTATTGAGGGA 60.070 38.462 12.28 4.49 0.00 4.20
2238 6502 6.122277 TGCCTAGAAAGACAATTATTGAGGG 58.878 40.000 12.28 3.30 0.00 4.30
2239 6503 7.814264 ATGCCTAGAAAGACAATTATTGAGG 57.186 36.000 12.28 7.04 0.00 3.86
2240 6504 9.727627 GAAATGCCTAGAAAGACAATTATTGAG 57.272 33.333 12.28 0.00 0.00 3.02
2241 6505 9.241919 TGAAATGCCTAGAAAGACAATTATTGA 57.758 29.630 12.28 0.00 0.00 2.57
2242 6506 9.859427 TTGAAATGCCTAGAAAGACAATTATTG 57.141 29.630 3.07 3.07 0.00 1.90
2245 6509 9.859427 CATTTGAAATGCCTAGAAAGACAATTA 57.141 29.630 4.82 0.00 0.00 1.40
2246 6510 8.370182 ACATTTGAAATGCCTAGAAAGACAATT 58.630 29.630 17.19 0.00 0.00 2.32
2247 6511 7.899973 ACATTTGAAATGCCTAGAAAGACAAT 58.100 30.769 17.19 0.00 0.00 2.71
2248 6512 7.288810 ACATTTGAAATGCCTAGAAAGACAA 57.711 32.000 17.19 0.00 0.00 3.18
2249 6513 6.899393 ACATTTGAAATGCCTAGAAAGACA 57.101 33.333 17.19 0.00 0.00 3.41
2250 6514 8.045176 AGTACATTTGAAATGCCTAGAAAGAC 57.955 34.615 17.19 3.09 0.00 3.01
2251 6515 7.882791 TGAGTACATTTGAAATGCCTAGAAAGA 59.117 33.333 17.19 0.00 0.00 2.52
2252 6516 8.044060 TGAGTACATTTGAAATGCCTAGAAAG 57.956 34.615 17.19 0.00 0.00 2.62
2253 6517 7.994425 TGAGTACATTTGAAATGCCTAGAAA 57.006 32.000 17.19 0.00 0.00 2.52
2254 6518 7.446931 TGTTGAGTACATTTGAAATGCCTAGAA 59.553 33.333 17.19 7.58 0.00 2.10
2255 6519 6.939730 TGTTGAGTACATTTGAAATGCCTAGA 59.060 34.615 17.19 4.05 0.00 2.43
2256 6520 7.144722 TGTTGAGTACATTTGAAATGCCTAG 57.855 36.000 17.19 0.00 0.00 3.02
2257 6521 7.701539 ATGTTGAGTACATTTGAAATGCCTA 57.298 32.000 17.19 1.31 45.19 3.93
2258 6522 6.594788 ATGTTGAGTACATTTGAAATGCCT 57.405 33.333 17.19 13.02 45.19 4.75
2259 6523 6.468956 CGTATGTTGAGTACATTTGAAATGCC 59.531 38.462 17.19 8.65 45.19 4.40
2260 6524 7.240674 TCGTATGTTGAGTACATTTGAAATGC 58.759 34.615 17.19 2.88 45.19 3.56
2261 6525 9.773328 ATTCGTATGTTGAGTACATTTGAAATG 57.227 29.630 15.82 15.82 45.19 2.32
2262 6526 9.773328 CATTCGTATGTTGAGTACATTTGAAAT 57.227 29.630 0.00 0.00 45.19 2.17
2263 6527 8.779303 ACATTCGTATGTTGAGTACATTTGAAA 58.221 29.630 1.31 0.00 45.19 2.69
2264 6528 8.317891 ACATTCGTATGTTGAGTACATTTGAA 57.682 30.769 1.31 0.00 45.19 2.69
2265 6529 7.899178 ACATTCGTATGTTGAGTACATTTGA 57.101 32.000 1.31 0.00 45.19 2.69
2266 6530 9.636965 CATACATTCGTATGTTGAGTACATTTG 57.363 33.333 13.12 0.00 45.19 2.32
2308 6572 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
2309 6573 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
2310 6574 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2311 6575 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2312 6576 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2313 6577 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2314 6578 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2315 6579 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2316 6580 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2317 6581 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2318 6582 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2319 6583 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2320 6584 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2321 6585 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2322 6586 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2323 6587 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2324 6588 4.530710 AAGTGACTACATACGGAGCAAA 57.469 40.909 0.00 0.00 0.00 3.68
2325 6589 5.847111 ATAAGTGACTACATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
2326 6590 5.847111 AATAAGTGACTACATACGGAGCA 57.153 39.130 0.00 0.00 0.00 4.26
2327 6591 8.638685 TTTTAATAAGTGACTACATACGGAGC 57.361 34.615 0.00 0.00 0.00 4.70
2355 6619 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2356 6620 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2357 6621 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2358 6622 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2359 6623 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2360 6624 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2361 6625 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2362 6626 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2363 6627 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2364 6628 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2365 6629 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2366 6630 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2367 6631 8.759782 CATATACTCCCTCCGTTCCTAAATATT 58.240 37.037 0.00 0.00 0.00 1.28
2368 6632 7.147707 GCATATACTCCCTCCGTTCCTAAATAT 60.148 40.741 0.00 0.00 0.00 1.28
2369 6633 6.154021 GCATATACTCCCTCCGTTCCTAAATA 59.846 42.308 0.00 0.00 0.00 1.40
2370 6634 5.046520 GCATATACTCCCTCCGTTCCTAAAT 60.047 44.000 0.00 0.00 0.00 1.40
2371 6635 4.282703 GCATATACTCCCTCCGTTCCTAAA 59.717 45.833 0.00 0.00 0.00 1.85
2372 6636 3.830755 GCATATACTCCCTCCGTTCCTAA 59.169 47.826 0.00 0.00 0.00 2.69
2373 6637 3.181426 TGCATATACTCCCTCCGTTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
2374 6638 2.249139 GCATATACTCCCTCCGTTCCT 58.751 52.381 0.00 0.00 0.00 3.36
2375 6639 1.968493 TGCATATACTCCCTCCGTTCC 59.032 52.381 0.00 0.00 0.00 3.62
2376 6640 3.391049 GTTGCATATACTCCCTCCGTTC 58.609 50.000 0.00 0.00 0.00 3.95
2377 6641 2.104281 GGTTGCATATACTCCCTCCGTT 59.896 50.000 0.00 0.00 0.00 4.44
2384 6648 5.242393 TCTTACTACCGGTTGCATATACTCC 59.758 44.000 15.04 0.00 0.00 3.85
2385 6649 6.323203 TCTTACTACCGGTTGCATATACTC 57.677 41.667 15.04 0.00 0.00 2.59
2386 6650 6.912951 ATCTTACTACCGGTTGCATATACT 57.087 37.500 15.04 0.00 0.00 2.12
2387 6651 9.136952 CTTTATCTTACTACCGGTTGCATATAC 57.863 37.037 15.04 0.00 0.00 1.47
2432 6696 2.100197 CACCTGGAGTCCGAGTATCAA 58.900 52.381 4.30 0.00 33.17 2.57
2434 6698 1.677052 GTCACCTGGAGTCCGAGTATC 59.323 57.143 4.30 0.00 0.00 2.24
2435 6699 1.765230 GTCACCTGGAGTCCGAGTAT 58.235 55.000 4.30 0.00 0.00 2.12
2436 6700 0.675837 CGTCACCTGGAGTCCGAGTA 60.676 60.000 4.30 0.00 0.00 2.59
2437 6701 1.972223 CGTCACCTGGAGTCCGAGT 60.972 63.158 4.30 0.90 0.00 4.18
2438 6702 2.701780 CCGTCACCTGGAGTCCGAG 61.702 68.421 4.30 0.18 0.00 4.63
2439 6703 2.675423 CCGTCACCTGGAGTCCGA 60.675 66.667 4.30 0.00 0.00 4.55
2440 6704 3.760035 CCCGTCACCTGGAGTCCG 61.760 72.222 4.30 0.00 0.00 4.79
2441 6705 3.391382 CCCCGTCACCTGGAGTCC 61.391 72.222 0.73 0.73 0.00 3.85
2442 6706 2.283676 TCCCCGTCACCTGGAGTC 60.284 66.667 0.00 0.00 0.00 3.36
2444 6708 1.192146 TTTCTCCCCGTCACCTGGAG 61.192 60.000 0.00 1.42 45.77 3.86
2445 6709 1.152204 TTTCTCCCCGTCACCTGGA 60.152 57.895 0.00 0.00 0.00 3.86
2447 6711 1.003718 GGTTTCTCCCCGTCACCTG 60.004 63.158 0.00 0.00 0.00 4.00
2456 6723 1.674651 GTTCGCCCTGGTTTCTCCC 60.675 63.158 0.00 0.00 34.77 4.30
2498 6765 3.196207 ATGCTGACGGGTGGCTTGT 62.196 57.895 0.00 0.00 0.00 3.16
2503 6770 0.532862 GGTATGATGCTGACGGGTGG 60.533 60.000 0.00 0.00 0.00 4.61
2521 6788 1.350019 TGGATGATATCTGCAGGCAGG 59.650 52.381 20.19 3.24 43.75 4.85
2523 6790 1.270465 CGTGGATGATATCTGCAGGCA 60.270 52.381 15.13 7.86 0.00 4.75
2524 6791 1.270518 ACGTGGATGATATCTGCAGGC 60.271 52.381 15.13 1.87 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.